Title: Externally Studentized Midrange Distribution
Diff between SMR versions 2.0 dated 2014-10-16 and 2.0.1 dated 2014-11-25
Description: Computes the studentized midrange distribution (pdf, cdf and quantile) and generates random numbers
Author: Ben Deivide de Oliveira Batista, Daniel Furtado Ferreira
Maintainer: Daniel Furtado Ferreira
DESCRIPTION | 10 +++----
MD5 | 4 +-
R/SMR.R | 81 +++++++++++++++++++++++++++++++++++++++---------------------
3 files changed, 60 insertions(+), 35 deletions(-)
More information about empiricalFDR.DESeq2 at CRAN
Permanent link
Title: Framework for the analysis of genomic prediction data using R
Diff between synbreed versions 0.10-4 dated 2014-11-11 and 0.10-5 dated 2014-11-25
Description: The package 'synbreed' was developed within the Synbreed project for synergistic plant and animal breeding (www.synbreed.tum.de). It contains a collection of functions required for genomic prediction in both plant and animal breeding. This covers data processing, data visualization and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).
Author: Valentin Wimmer, Hans-Juergen Auinger, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Valentin Wimmer
DESCRIPTION | 12 ++++++------
MD5 | 4 ++--
R/predict.gpMod.r | 8 ++++----
3 files changed, 12 insertions(+), 12 deletions(-)
Title: R interface to REDCap
Diff between redcapAPI versions 1.0.1 dated 2014-10-20 and 1.1 dated 2014-11-25
Description: Access data stored in REDCap databases using the Application Programming Interface (API). REDCap (Research Electronic Data CAPture) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The API allows users to access data and project meta data (such as the data dictionary) from the web programmatically. The redcapAPI package facilitates the process of accessing data with options to prepare an analysis-ready data set consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter. Initiated by Jeffrey Horner and Will Gray with contributions from Jeremy Stephens, and Will Beasley
Maintainer: Benjamin Nutter
DESCRIPTION | 13 ++++----
MD5 | 40 ++++++++++++------------
NAMESPACE | 6 +++
NEWS | 11 ++++++
R/deleteFiles.R | 6 +--
R/exportArms.R | 2 -
R/exportEvents.R | 2 -
R/exportFiles.R | 6 +--
R/exportInstruments.R | 4 +-
R/exportMappings.R | 4 +-
R/exportMetaData.R | 2 -
R/exportRecords.R | 17 ++++------
R/exportReports.R | 6 +--
R/exportUsers.R | 2 -
R/fieldToVar.R | 4 +-
R/importFiles.R | 8 ++--
R/importRecords.R | 26 ++++++++--------
R/recodeCheck.R | 4 +-
R/syncUnderscoreCodings.R | 4 +-
R/validateImport.R | 74 +++++++++++++++++++++++-----------------------
man/fieldToVar.Rd | 3 +
21 files changed, 131 insertions(+), 113 deletions(-)
Title: Methods in Structural Reliability
Diff between mistral versions 1.1-0 dated 2014-02-15 and 1.1-1 dated 2014-11-25
Description: Various reliability analysis methods for: 1) computing
failure probability (probability that the output of a numerical
model exceeds a threshold); 2) computing the size of a sample
to estimate a quantile with a confidence level.
Author: Nicolas BOUSQUET, Gilles DEFAUX, Bertrand IOOSS, Vincent MOUTOUSSAMY, Clement WALTER
Maintainer: Bertrand Iooss
DESCRIPTION | 10 +++++-----
MD5 | 32 ++++++++++++++++----------------
R/AKMCS.R | 2 +-
R/MRM.R | 1 -
R/MetaIS.R | 10 +++++-----
R/MetropolisHastings.R | 4 ++--
R/MonteCarlo.R | 1 +
R/S2MART.R | 11 ++++++-----
R/SMART.R | 45 +++++++++++++++++++++++++++++----------------
R/SubsetSimulation.R | 2 +-
man/AKMCS.Rd | 23 ++++++++++++++---------
man/MetaIS.Rd | 25 +++++++++++++++----------
man/Mistral-package.Rd | 2 +-
man/S2MART.Rd | 15 ++++++++++-----
man/SMART.Rd | 20 +++++++++++++-------
man/SubsetSimulation.Rd | 14 ++++++++++----
man/UtoX.Rd | 21 ++++++++++++++-------
17 files changed, 143 insertions(+), 95 deletions(-)
Title: Effect Displays for Linear, Generalized Linear,
Multinomial-Logit, Proportional-Odds Logit Models and
Mixed-Effects Models
Diff between effects versions 3.0-1 dated 2014-08-14 and 3.0-2 dated 2014-11-25
Description:
Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb]
Maintainer: John Fox
DESCRIPTION | 17
MD5 | 24
NAMESPACE | 10
NEWS | 8
R/Effect.R | 9
R/effectsmer.R | 18
R/effectspoLCA.R | 1
R/plot-methods.R | 2339 ++++++++++++++++++++++++-------------------------
R/plot.effpoly.R | 1
R/utilities.R | 1
man/effect.Rd | 9
man/effects-package.Rd | 4
man/summary.effect.Rd | 8
13 files changed, 1243 insertions(+), 1206 deletions(-)
Title: Dynamic slicing
Diff between dslice versions 1.1.3 dated 2014-11-24 and 1.1.4 dated 2014-11-25
Description: Dynamic slicing is a method designed for dependency detection between a categorical variable and a continuous variable. It could be applied for non-parametric hypothesis testing and gene set enrichment analysis.
Author: Chao Ye and Bo Jiang
Maintainer: Chao Ye
dslice-1.1.3/dslice/vignettes/slice.eps |only
dslice-1.1.4/dslice/DESCRIPTION | 6
dslice-1.1.4/dslice/MD5 | 11
dslice-1.1.4/dslice/inst/doc/dslice.R | 31 +
dslice-1.1.4/dslice/inst/doc/dslice.Rnw | 734 ++++++++++++++++---------------
dslice-1.1.4/dslice/inst/doc/dslice.pdf |binary
dslice-1.1.4/dslice/vignettes/dslice.Rnw | 734 ++++++++++++++++---------------
7 files changed, 801 insertions(+), 715 deletions(-)
Title: Hartigan's dip test statistic for unimodality - corrected code
Diff between diptest versions 0.75-5 dated 2013-07-23 and 0.75-6 dated 2014-11-25
Description: Compute Hartigan's dip test statistic for unimodality /
multimodality and provide a test with simulation based p-values.
Author: Martin Maechler (originally from Fortran and S-plus by Dario Ringach, NYU.edu)
Maintainer: Martin Maechler
diptest-0.75-5/diptest/vignettes/diptest-issues.aux |only
diptest-0.75-5/diptest/vignettes/diptest-issues.bbl |only
diptest-0.75-5/diptest/vignettes/diptest-issues.blg |only
diptest-0.75-5/diptest/vignettes/diptest-issues.log |only
diptest-0.75-5/diptest/vignettes/diptest-issues.out |only
diptest-0.75-6/diptest/DESCRIPTION | 12 +++----
diptest-0.75-6/diptest/MD5 | 28 +++++++---------
diptest-0.75-6/diptest/R/dip.R | 12 +------
diptest-0.75-6/diptest/R/dipTest.R | 2 -
diptest-0.75-6/diptest/build |only
diptest-0.75-6/diptest/inst/doc/diptest-issues.R | 6 +--
diptest-0.75-6/diptest/inst/doc/diptest-issues.Rnw | 1
diptest-0.75-6/diptest/inst/doc/diptest-issues.pdf |binary
diptest-0.75-6/diptest/inst/doc/diptest.bib |only
diptest-0.75-6/diptest/inst/doc/myVignette.sty |only
diptest-0.75-6/diptest/man/dip.test.Rd | 6 +++
diptest-0.75-6/diptest/tests/ex1.Rout.save | 19 ++++++-----
diptest-0.75-6/diptest/tests/sim1.Rout.save | 33 +++++++++-----------
diptest-0.75-6/diptest/vignettes/diptest-issues.Rnw | 8 ++--
19 files changed, 62 insertions(+), 65 deletions(-)
Title: Computation and estimation of reliability of stress-strength
models
Diff between StressStrength versions 1.0 dated 2012-01-16 and 1.0.1 dated 2014-11-25
More information about StressStrength at CRAN
Description: The package provide functions for computing the reliability of stress-strength models and for building two-sided or one-sided confidence intervals according to different approximate procedures
Author: Alessandro Barbiero
Maintainer: Alessandro Barbiero
StressStrength-1.0.1/StressStrength/DESCRIPTION | 17 +++++++----------
StressStrength-1.0.1/StressStrength/MD5 | 4 ++--
StressStrength-1.0.1/StressStrength/NAMESPACE |only
StressStrength-1.0/StressStrength/doc |only
4 files changed, 9 insertions(+), 12 deletions(-)
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-18 5.55
2013-11-26 5.54
2013-06-06 5.50
2013-05-23 5.49
2013-05-01 5.45
2013-04-24 5.44
2013-03-28 5.36
2013-03-21 5.34
2012-11-27 5.27
2012-11-24 5.26
2012-11-05 5.25
2012-10-25 5.24
2012-10-01 5.23
2012-05-05 5.17
2012-02-09 5.13
2011-11-11 5.5
2011-10-24 5.3
2011-09-20 5.2
2011-09-08 5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-20 1.9
Title: Estimation of R0 and real-time reproduction number from
epidemics
Diff between R0 versions 1.2-4 dated 2013-12-13 and 1.2-5 dated 2014-11-25
Description: This package is designed to estimate reproduction numbers for disease outbreak, based on incidence data. It implements several documented methods. It is therefore possible to compare estimations according to the methods used. Depending on the methods requested by user, basic reproduction number (commonly denoted as R0) or real-time reproduction number (referred to as R(t)) is computed, along with a 95% Confidence Interval. Plotting outputs will give different graphs depending on the methods requested : basic reproductive number estimations will only show the epidemic curve (collected data) and an adjusted model, whereas real-time methods will also show the R(t) variations throughout the outbreak time period. Sensitivity analysis tools are also provided, and allow for investigating effects of varying Generation Time distribution or time window on estimates.
Author: Pierre-Yves Boelle, Thomas Obadia
Maintainer: Thomas Obadia
DESCRIPTION | 8 -
MD5 | 30 +++----
R/est.GT.R | 2
R/sa.GT.R | 2
R/sa.time.R | 2
data/GT.chld.hsld.rda |binary
data/Germany.1918.rda |binary
data/H1N1.serial.interval.rda |binary
demo/epid.demo.R | 6 -
man/R0-package.Rd | 48 +++++------
man/est.GT.Rd | 2
man/plot.R0.S.Rd | 2
man/sa.GT.Rd | 6 -
man/sa.time.Rd | 12 +-
man/sensitivity.analysis.Rd | 178 +++++++++++++++++++++---------------------
tests/sensitivity.analysis.R | 4
16 files changed, 151 insertions(+), 151 deletions(-)
Title: Functions to make surveys processing easier.
Diff between questionr versions 0.4.1 dated 2014-07-16 and 0.4.2 dated 2014-11-25
Description: This package provides some convenience functions to make the
processing and analysis of surveys easier.
Author: Julien Barnier [aut, cre],
François Briatte [aut],
Joseph Larmarange [aut]
Maintainer: Julien Barnier
questionr-0.4.1/questionr/R/imca.r |only
questionr-0.4.1/questionr/inst/icut |only
questionr-0.4.1/questionr/inst/imca |only
questionr-0.4.1/questionr/inst/iorder |only
questionr-0.4.1/questionr/inst/irec |only
questionr-0.4.1/questionr/man/imca.Rd |only
questionr-0.4.2/questionr/DESCRIPTION | 16
questionr-0.4.2/questionr/MD5 | 143 ++----
questionr-0.4.2/questionr/NAMESPACE | 14
questionr-0.4.2/questionr/NEWS | 12
questionr-0.4.2/questionr/R/describe.r | 4
questionr-0.4.2/questionr/R/icut.r | 228 +++++++++
questionr-0.4.2/questionr/R/iorder.R | 176 +++++++
questionr-0.4.2/questionr/R/irec.r | 234 +++++++++-
questionr-0.4.2/questionr/R/lookfor.r | 4
questionr-0.4.2/questionr/R/odds.ratio.r | 8
questionr-0.4.2/questionr/R/recode.r | 2
questionr-0.4.2/questionr/R/table.multi.r | 48 +-
questionr-0.4.2/questionr/R/tables.r | 12
questionr-0.4.2/questionr/R/tools.r | 7
questionr-0.4.2/questionr/R/utils.r | 4
questionr-0.4.2/questionr/data/happy.rda |binary
questionr-0.4.2/questionr/data/hdv2003.rda |binary
questionr-0.4.2/questionr/data/rp99.rda |binary
questionr-0.4.2/questionr/inst/po/en/LC_MESSAGES/R-questionr.mo |binary
questionr-0.4.2/questionr/inst/po/en@quot/LC_MESSAGES/R-questionr.mo |binary
questionr-0.4.2/questionr/inst/po/fr/LC_MESSAGES/R-questionr.mo |binary
questionr-0.4.2/questionr/inst/shiny |only
questionr-0.4.2/questionr/man/addNAstr.Rd | 37 -
questionr-0.4.2/questionr/man/chisq.residuals.Rd | 28 -
questionr-0.4.2/questionr/man/clipcopy.Rd | 53 --
questionr-0.4.2/questionr/man/cprop.Rd | 32 -
questionr-0.4.2/questionr/man/cramer.v.Rd | 8
questionr-0.4.2/questionr/man/cross.multi.table.Rd | 40 +
questionr-0.4.2/questionr/man/describe.Rd | 26 -
questionr-0.4.2/questionr/man/duplicated2.Rd | 25 -
questionr-0.4.2/questionr/man/format.proptab.Rd | 26 -
questionr-0.4.2/questionr/man/freq.Rd | 33 -
questionr-0.4.2/questionr/man/freq.na.Rd | 17
questionr-0.4.2/questionr/man/hdv2003.Rd | 8
questionr-0.4.2/questionr/man/icut.Rd | 21
questionr-0.4.2/questionr/man/iorder.Rd | 25 -
questionr-0.4.2/questionr/man/irec.Rd | 21
questionr-0.4.2/questionr/man/lookfor.Rd | 51 --
questionr-0.4.2/questionr/man/multi.split.Rd | 34 -
questionr-0.4.2/questionr/man/multi.table.Rd | 55 +-
questionr-0.4.2/questionr/man/na.rm.Rd | 25 -
questionr-0.4.2/questionr/man/odds.ratio.Rd | 62 +-
questionr-0.4.2/questionr/man/print.proptab.Rd | 22
questionr-0.4.2/questionr/man/prop.Rd | 32 -
questionr-0.4.2/questionr/man/qload.Rd | 35 -
questionr-0.4.2/questionr/man/qscan.Rd | 29 -
questionr-0.4.2/questionr/man/quant.cut.Rd | 32 -
questionr-0.4.2/questionr/man/questionr.Rd | 3
questionr-0.4.2/questionr/man/recode.na.Rd | 37 -
questionr-0.4.2/questionr/man/rename.variable.Rd | 13
questionr-0.4.2/questionr/man/rm.unused.levels.Rd | 20
questionr-0.4.2/questionr/man/rp99.Rd | 6
questionr-0.4.2/questionr/man/rprop.Rd | 32 -
questionr-0.4.2/questionr/man/wtd.mean.Rd | 33 -
questionr-0.4.2/questionr/man/wtd.table.Rd | 36 -
questionr-0.4.2/questionr/po/R-en.po | 100 ++++
questionr-0.4.2/questionr/po/R-fr.mo |only
questionr-0.4.2/questionr/po/R-fr.po | 109 ++++
questionr-0.4.2/questionr/po/R-questionr.pot | 94 +++-
65 files changed, 1475 insertions(+), 697 deletions(-)
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Diff between PrevMap versions 1.0 dated 2014-10-30 and 1.1 dated 2014-11-25
Description: The PrevMap package provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data. 'PrevMap' is
also an extension of the 'geoR' package which should be installed first
together with the 'maxLik', 'raster' and 'pdist' packages.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi
DESCRIPTION | 11 +-
MD5 | 18 +--
NAMESPACE | 3
R/foo.R | 203 ++++++++++++++++++++++++++++++++++---
man/binomial.logistic.MCML.Rd | 5
man/continuous.sample.Rd |only
man/discrete.sample.Rd |only
man/spatial.pred.binomial.Bayes.Rd | 2
man/spatial.pred.binomial.MCML.Rd | 2
man/spatial.pred.linear.Bayes.Rd | 2
man/spatial.pred.linear.MLE.Rd | 2
11 files changed, 211 insertions(+), 37 deletions(-)
Title: Routines for fitting kinetic models to chemical degradation data
Diff between kinfit versions 1.1.12 dated 2013-11-27 and 1.1.13 dated 2014-11-25
Description: Simple calculation routines based on the FOCUS Kinetics
Report (2006). Only kinetic models for parent only datasets are
included (no metabolite formation/decline or multicompartment kinetics).
Please note that no warranty is implied for correctness of results or
fitness for a particular purpose.
This package is not actively developed at the moment. Please check the mkin
package for an actively maintained package for kinetic evaluations of
degradation data
Author: Johannes Ranke, with contributions from Katrin Lindenberger
Maintainer: Johannes Ranke
kinfit-1.1.12/kinfit/vignettes/Rplots.pdf |only
kinfit-1.1.13/kinfit/DESCRIPTION | 15 -
kinfit-1.1.13/kinfit/MD5 | 39 +-
kinfit-1.1.13/kinfit/build/vignette.rds |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_A.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_B.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_C.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_D.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_DFOP_ref_A_to_B.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_E.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_F.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_FOMC_ref_A_to_F.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_HS_ref_A_to_F.rda |binary
kinfit-1.1.13/kinfit/data/FOCUS_2006_SFO_ref_A_to_F.rda |binary
kinfit-1.1.13/kinfit/inst/doc/examples.pdf |binary
kinfit-1.1.13/kinfit/inst/doc/kinfit.Rnw | 2
kinfit-1.1.13/kinfit/inst/doc/kinfit.pdf |binary
kinfit-1.1.13/kinfit/man/DFOP.Rd | 2
kinfit-1.1.13/kinfit/tests/test_FOCUS_2006_A.R | 2
kinfit-1.1.13/kinfit/tests/test_FOCUS_2006_A.Rout.save | 198 +++++++--------
kinfit-1.1.13/kinfit/vignettes/kinfit.Rnw | 2
21 files changed, 132 insertions(+), 128 deletions(-)
Title: Fractal Image Data Generator
Diff between Julia versions 1.0 dated 2011-02-12 and 1.1 dated 2014-11-25
Description: Generates image data for fractals (Julia and Mandelbrot
sets) on the complex plane in the given region and resolution.
Author: Mehmet Suzen [aut, main]
Maintainer: Mehmet Suzen
DESCRIPTION | 11 ++++++-----
MD5 | 10 +++++-----
man/Julia-package.Rd | 8 +++++---
man/JuliaIterate.Rd | 17 ++++++-----------
man/MandelImage.Rd | 10 +++-------
man/MandelIterate.Rd | 26 +++++++-------------------
6 files changed, 32 insertions(+), 50 deletions(-)
Title: Object Oriented Implementation of Probability Models
Diff between distrMod versions 2.5.2 dated 2013-09-12 and 2.5.3 dated 2014-11-25
Description: Object oriented implementation of probability models based on packages 'distr' and
'distrEx'
Author: Matthias Kohl, Peter Ruckdeschel
Maintainer: Peter Ruckdeschel
distrMod-2.5.2/distrMod/vignettes/Rplots.pdf |only
distrMod-2.5.3/distrMod/DESCRIPTION | 19 ++++++++++---------
distrMod-2.5.3/distrMod/MD5 | 13 +++++++------
distrMod-2.5.3/distrMod/NAMESPACE | 4 +++-
distrMod-2.5.3/distrMod/R/SimpleL2ParamFamilies.R | 4 ++--
distrMod-2.5.3/distrMod/build |only
distrMod-2.5.3/distrMod/inst/NEWS | 10 ++++++++++
distrMod-2.5.3/distrMod/inst/doc/distrMod.pdf |binary
distrMod-2.5.3/distrMod/tests |only
9 files changed, 32 insertions(+), 18 deletions(-)
Title: Discrete inverse Weibull distribution
Diff between DiscreteInverseWeibull versions 1.0 dated 2012-10-19 and 1.0.1 dated 2014-11-25
More information about DiscreteInverseWeibull at CRAN
Description: Probability mass function, distribution function, quantile function, random generation and parameter estimation for the discrete inverse Weibull distribution
Author: Alessandro Barbiero, Riccardo Inchingolo, Mario Samigli
Maintainer: Alessandro Barbiero
DiscreteInverseWeibull-1.0.1/DiscreteInverseWeibull/DESCRIPTION | 15 ++++------
DiscreteInverseWeibull-1.0.1/DiscreteInverseWeibull/MD5 | 7 ++--
DiscreteInverseWeibull-1.0.1/DiscreteInverseWeibull/NAMESPACE | 1
DiscreteInverseWeibull-1.0.1/DiscreteInverseWeibull/man/ahrdiweibull.Rd | 2 -
DiscreteInverseWeibull-1.0/DiscreteInverseWeibull/doc |only
5 files changed, 12 insertions(+), 13 deletions(-)
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-25 1.1
Title: Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Diff between vcrpart versions 0.2-2 dated 2014-11-07 and 0.2-3 dated 2014-11-25
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression.
Author: Reto Buergin [aut, cre, cph],
Gilbert Ritschard [ctb, ths]
Maintainer: Reto Buergin
DESCRIPTION | 8 -
MD5 | 27 ++---
NAMESPACE | 1
NEWS | 11 ++
R/otsplot.R | 14 ++
R/tvcm-utils.R | 256 ++++++++++++++++++++++++++++------------------------
R/utils.R | 30 +-----
inst/CITATION | 11 +-
man/contr-wsum.Rd |only
man/fvcm.Rd | 11 +-
man/olmm-control.Rd | 8 -
man/olmm-gefp.Rd | 44 +++-----
man/olmm-methods.Rd | 2
man/otsplot.Rd | 4
man/tvcolmm.Rd | 2
15 files changed, 226 insertions(+), 203 deletions(-)
Title: General-Purpose Optimisation With the Self-Organising Migrating
Algorithm
Diff between soma versions 1.1.0 dated 2011-07-28 and 1.1.1 dated 2014-11-25
Description: This package provides an R implementation of the Self-Organising Migrating Algorithm, a general-purpose, stochastic optimisation algorithm. The approach is similar to that of genetic algorithms, although it is based on the idea of a series of ``migrations'' by a fixed set of individuals, rather than the development of successive generations. It can be applied to any cost-minimisation problem with a bounded parameter space, and is robust to local minima.
Author: Jon Clayden; based on the work of Ivan Zelinka
Maintainer: Jon Clayden
soma-1.1.0/soma/LICENCE |only
soma-1.1.1/soma/DESCRIPTION | 25 ++++++++++---------------
soma-1.1.1/soma/MD5 |only
soma-1.1.1/soma/NEWS | 7 +++++++
soma-1.1.1/soma/README.md |only
soma-1.1.1/soma/man/soma.Rd | 2 +-
6 files changed, 18 insertions(+), 16 deletions(-)
Title: An R Interface to the Oniguruma Regular Expression Library
Diff between ore versions 1.0.1 dated 2014-10-21 and 1.0.4 dated 2014-11-25
Description: Provides an alternative to R's built-in functionality for handling
regular expressions, based on the Oniguruma library. It offers first-class
compiled regex objects, partial matching and function-based substitutions,
amongst other features.
Author: Jon Clayden, based on Onigmo by K. Kosako and K. Takata
Maintainer: Jon Clayden
DESCRIPTION | 9 -
MD5 | 28 ++--
NAMESPACE | 2
NEWS | 26 ++++
R/match.R | 68 ++--------
README.md | 2
man/matches.Rd | 8 +
src/Makevars | 2
src/main.c | 267 ++++++++++++++++++++++++++++++++++++-------
src/main.h | 22 +++
src/onig/regint.h | 4
src/onig/regparse.c | 9 -
src/onig/st.c | 16 +-
src/onig/st.h | 2
tests/testthat/test-15-rex.R | 37 +++--
15 files changed, 359 insertions(+), 143 deletions(-)
Title: dataframes2xls writes data frames to xls files
Diff between dataframes2xls versions 0.4.5 dated 2011-05-03 and 0.4.6 dated 2014-11-25
More information about dataframes2xls at CRAN
Description: dataframes2xls writes data frames to xls files. It
supports multiple sheets and basic formatting.
Author: Guido van Steen
Maintainer: Guido van Steen
DESCRIPTION | 13 +++++++------
LICENSE | 13 +++----------
MD5 |only
3 files changed, 10 insertions(+), 16 deletions(-)
Permanent link
Title: Visualising bipartite networks and calculating some (ecological)
indices.
Diff between bipartite versions 2.04 dated 2014-03-25 and 2.05 dated 2014-11-25
Description: Bipartite provides functions to visualise webs and calculate a series of indices commonly used to describe pattern in ecological webs. It focuses on webs consisting of only two trophic levels, e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the webs topology.
Author: Carsten F. Dormann, Jochen Fruend and Bernd Gruber, with additional code from Mariano Devoto, Jose Iriondo, Rouven Strauss and Diego Vazquez, also based on C-code developed by Nils Bluethgen, Aaron Clauset/Rouven Strauss and Miguel Rodriguez-Girones.
Maintainer: Carsten F. Dormann
bipartite-2.04/bipartite/R/nested.R |only
bipartite-2.04/bipartite/R/vaznull.r |only
bipartite-2.05/bipartite/DESCRIPTION | 8
bipartite-2.05/bipartite/MD5 | 48 ++--
bipartite-2.05/bipartite/NAMESPACE | 2
bipartite-2.05/bipartite/R/as.one.mode.r | 4
bipartite-2.05/bipartite/R/mgen.R |only
bipartite-2.05/bipartite/R/nested.r |only
bipartite-2.05/bipartite/R/nestedcontribution.R |only
bipartite-2.05/bipartite/R/networklevel.R | 4
bipartite-2.05/bipartite/R/nullmodel.r | 24 +-
bipartite-2.05/bipartite/R/second.extinct.R | 201 ++++++++---------
bipartite-2.05/bipartite/R/vaznull.R |only
bipartite-2.05/bipartite/inst/doc/Dormann2008Rnews.pdf |binary
bipartite-2.05/bipartite/man/C.score.Rd | 2
bipartite-2.05/bipartite/man/ND.rd | 201 ++++++++---------
bipartite-2.05/bipartite/man/bipartite-package.Rd | 15 +
bipartite-2.05/bipartite/man/computeModules.Rd | 4
bipartite-2.05/bipartite/man/discrepancy.Rd | 13 -
bipartite-2.05/bipartite/man/mgen.Rd |only
bipartite-2.05/bipartite/man/nested.Rd | 2
bipartite-2.05/bipartite/man/nestedcontribution.Rd |only
bipartite-2.05/bipartite/man/nestedrank.Rd | 132 +++++------
bipartite-2.05/bipartite/man/networklevel.Rd | 12 -
bipartite-2.05/bipartite/man/nullmodel.rd | 15 -
bipartite-2.05/bipartite/man/r2dexternal.Rd | 2
bipartite-2.05/bipartite/man/swap.web.Rd | 33 --
bipartite-2.05/bipartite/man/vaznull.rd | 37 +--
bipartite-2.05/bipartite/man/vazquez.example.rd | 28 +-
29 files changed, 397 insertions(+), 390 deletions(-)
Title: Utilities for Sweave together with TeX listings package
Diff between SweaveListingUtils versions 0.6.1 dated 2013-02-09 and 0.6.2 dated 2014-11-25
More information about SweaveListingUtils at CRAN
Description: provides utilities for defining R / Rd as Tex-package-listings "language" and
including R / Rd source file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between vignette and documented
source code
Author: Peter Ruckdeschel
Maintainer: Peter Ruckdeschel
SweaveListingUtils-0.6.1/SweaveListingUtils/SweaveListingUtils-Ex.R |only
SweaveListingUtils-0.6.1/SweaveListingUtils/tests |only
SweaveListingUtils-0.6.2/SweaveListingUtils/DESCRIPTION | 29 ++++------
SweaveListingUtils-0.6.2/SweaveListingUtils/MD5 | 18 +++---
SweaveListingUtils-0.6.2/SweaveListingUtils/R/SweaveListingOptions.R | 4 -
SweaveListingUtils-0.6.2/SweaveListingUtils/build |only
SweaveListingUtils-0.6.2/SweaveListingUtils/inst/NEWS | 14 ++++
SweaveListingUtils-0.6.2/SweaveListingUtils/inst/doc/ExampleSweaveListingUtils.R |only
SweaveListingUtils-0.6.2/SweaveListingUtils/inst/doc/ExampleSweaveListingUtils.Rnw | 6 +-
SweaveListingUtils-0.6.2/SweaveListingUtils/inst/doc/ExampleSweaveListingUtils.pdf |binary
SweaveListingUtils-0.6.2/SweaveListingUtils/man/0SweaveListingUtils-package.Rd | 8 +-
SweaveListingUtils-0.6.2/SweaveListingUtils/vignettes/ExampleSweaveListingUtils.Rnw | 6 +-
12 files changed, 48 insertions(+), 37 deletions(-)
Permanent link
Title: Dataframe Summaries, Frequency Tables and Numerical Summaries
with Customizable Output
Diff between summarytools versions 0.1 dated 2014-08-10 and 0.2 dated 2014-11-25
Description: Includes 3 summarizing functions; one for categorical data (freq),
one for numerical (uni or multidimensional) data (desc), and one
exclusively for dataframes. 'freq' generates frequency tables with valid
and total proportions. 'desc' generates common central tendency statistics
and measures of dispersion for numerical data. 'dfSummary' will generate a
table containing as many rows as there are columns, each row giving
variable information (class and type), labels if any, common statistics for
numerical data and frequency tables for any type of data, along with number
and proportion of valid (non-missing) values.
Author: Dominic Comtois
Maintainer: Dominic Comtois
summarytools-0.1/summarytools/man/frequencies.Rd |only
summarytools-0.1/summarytools/man/properties.Rd |only
summarytools-0.1/summarytools/man/unistats.Rd |only
summarytools-0.2/summarytools/DESCRIPTION | 21
summarytools-0.2/summarytools/MD5 | 14
summarytools-0.2/summarytools/NAMESPACE | 2
summarytools-0.2/summarytools/NEWS |only
summarytools-0.2/summarytools/R/summarytools.R | 605 +++++++++++------------
summarytools-0.2/summarytools/man/desc.Rd |only
summarytools-0.2/summarytools/man/dfSummary.Rd | 17
summarytools-0.2/summarytools/man/freq.Rd |only
11 files changed, 327 insertions(+), 332 deletions(-)
Title: Set (Normal) Random Number Generator and Seed
Diff between setRNG versions 2011.11-2 dated 2012-03-27 and 2013.9-1 dated 2014-11-25
Description: SetRNG provides utilities to help set and record the setting of
the seed and the uniform and normal generators used when a random
experiment is run. The utilities can be used in other functions
that do random experiments to simplify recording and/or setting all the
necessary information for reproducibility.
See the vignette and reference manual for examples.
Author: Paul Gilbert
Maintainer: Paul Gilbert
setRNG-2011.11-2/setRNG/S |only
setRNG-2013.9-1/setRNG/DESCRIPTION | 22 ++++++++++------------
setRNG-2013.9-1/setRNG/MD5 | 10 +++++-----
setRNG-2013.9-1/setRNG/NEWS | 4 ++++
setRNG-2013.9-1/setRNG/build |only
setRNG-2013.9-1/setRNG/inst/doc/setRNG.pdf |binary
setRNG-2013.9-1/setRNG/man/getRNG.Rd | 2 +-
7 files changed, 20 insertions(+), 18 deletions(-)
Title: Random orthonormal matrix generation on the Stiefel manifold
Diff between rstiefel versions 0.9 dated 2012-01-12 and 0.10 dated 2014-11-25
Description: This package simulates random orthonormal matrices from linear and quadratic exponential family distributions on the Stiefel manifold. The most general type of distribution covered is the matrix-variate Bingham-von Mises-Fisher distribution. Most of the simulation methods are presented in Hoff(2009) "Simulation of the Matrix Bingham-von Mises-Fisher Distribution, With Applications to Multivariate and Relational Data."
Author: Peter Hoff
Maintainer: Peter Hoff
rstiefel-0.10/rstiefel/DESCRIPTION | 18 ++----
rstiefel-0.10/rstiefel/MD5 | 17 +++---
rstiefel-0.10/rstiefel/R/rbing.vector.gibbs.R | 2
rstiefel-0.10/rstiefel/R/rmf.vector.R | 2
rstiefel-0.10/rstiefel/build |only
rstiefel-0.10/rstiefel/inst/doc/rstiefel.R |only
rstiefel-0.10/rstiefel/man/rbing.vector.gibbs.Rd | 24 +++++---
rstiefel-0.10/rstiefel/man/rmf.vector.Rd | 2
rstiefel-0.10/rstiefel/man/rstiefel-package.Rd | 4 -
rstiefel-0.10/rstiefel/vignettes/rstiefel.Rnw | 62 ++++++++++++++++++++++-
rstiefel-0.9/rstiefel/vignettes/rstiefel.bbl |only
11 files changed, 96 insertions(+), 35 deletions(-)
Title: Multilevel Propensity Score Analysis
Diff between multilevelPSA versions 1.2 dated 2013-05-10 and 1.2.2 dated 2014-11-25
Description: Functions to estimate and visualize propensity
score analysis for multilevel, or clustered, data.
Author: Jason Bryer
Maintainer: Jason Bryer
DESCRIPTION | 23 +---
MD5 | 120 ++++++++++++----------
NAMESPACE | 14 ++
NEWS | 37 ++++++
R/align.R | 35 +++++-
R/covariate.balance.R |only
R/covariateBalance.R |only
R/cv.trans.psa.R |only
R/mlpsa.R | 178 +++++++++++++++++++--------------
R/mlpsa.ctree.R | 6 -
R/mlpsa.logistic.R | 25 ++++
R/mlpsa.print.R | 2
R/multilevelPSA-package.R | 8 +
R/plot.balance.R |only
R/plot.loess.R | 37 +++++-
R/plot.missing.R | 2
R/plot.mlpsa.R | 11 --
R/plot.mlpsa.circ.R | 8 -
R/plot.mlpsa.difference.R | 57 +++++++++-
R/plot.mlpsa.distribution.R | 38 ++++---
R/psrange.r | 49 ++++++---
R/xtable.mlpsa.r | 2
data/pisa.colnames.rda |binary
data/pisa.countries.rda |binary
data/pisana.rda |binary
demo/00Index | 1
demo/pisa.R | 39 ++++---
demo/pisa.loess.R | 3
demo/plotmissing.r | 8 -
demo/psrange-trees.R |only
man/align.plots.Rd | 14 +-
man/as.data.frame.covariate.balance.Rd |only
man/covariate.balance.Rd |only
man/covariateBalance.Rd |only
man/cv.trans.psa.Rd |only
man/difftable.plot.Rd | 20 +--
man/geom_rug_alt.Rd | 36 ++----
man/getPropensityScores.Rd | 17 +--
man/getStrata.Rd | 19 +--
man/is.mlpsa.Rd | 7 -
man/loess.plot.Rd | 49 +++++----
man/lsos.Rd | 14 +-
man/missing.plot.Rd | 34 ++----
man/mlpsa.Rd | 36 ++++--
man/mlpsa.circ.plot.Rd | 103 +++++++------------
man/mlpsa.ctree.Rd | 40 +++----
man/mlpsa.difference.plot.Rd | 70 ++++++------
man/mlpsa.distribution.plot.Rd | 37 ++----
man/mlpsa.logistic.Rd | 27 ++---
man/multilevelPSA-package.Rd | 63 +++++------
man/pisa.colnames.Rd | 11 --
man/pisa.countries.Rd | 7 -
man/pisa.psa.cols.Rd | 5
man/pisana.Rd | 27 ++---
man/plot.covariate.balance.Rd |only
man/plot.mlpsa.Rd | 25 ++--
man/plot.psrange.Rd | 53 ++++-----
man/print.covariate.balance.Rd |only
man/print.mlpsa.Rd | 9 -
man/print.psrange.Rd | 9 -
man/print.xmlpsa.Rd | 18 +--
man/psrange.Rd | 38 +++----
man/summary.mlpsa.Rd | 13 +-
man/summary.psrange.Rd | 9 -
man/tree.plot.Rd | 56 ++++------
man/xtable.mlpsa.Rd | 28 ++---
man/zeroGrob.Rd |only
67 files changed, 891 insertions(+), 706 deletions(-)
Title: GPA Factor Rotation
Diff between GPArotation versions 2012.3-1 dated 2012-03-27 and 2014.11-1 dated 2014-11-25
Description: Gradient Projection Algorithm Rotation for Factor Analysis. See ?GPArotation.Intro for more details.
Author: Coen Bernaards and Robert Jennrich
Maintainer: Paul Gilbert
GPArotation-2012.3-1/GPArotation/Rbuildignore |only
GPArotation-2014.11-1/GPArotation/DESCRIPTION | 14 ++++-----
GPArotation-2014.11-1/GPArotation/MD5 | 20 +++++++-------
GPArotation-2014.11-1/GPArotation/NEWS | 4 ++
GPArotation-2014.11-1/GPArotation/build |only
GPArotation-2014.11-1/GPArotation/data/Harman.rda |binary
GPArotation-2014.11-1/GPArotation/data/Thurstone.rda |binary
GPArotation-2014.11-1/GPArotation/data/WansbeekMeijer.rda |binary
GPArotation-2014.11-1/GPArotation/inst/doc/Guide.Stex | 7 ----
GPArotation-2014.11-1/GPArotation/inst/doc/Guide.pdf |binary
GPArotation-2014.11-1/GPArotation/man/rotations.Rd | 15 +++++++---
GPArotation-2014.11-1/GPArotation/vignettes/Guide.Stex | 7 ----
12 files changed, 32 insertions(+), 35 deletions(-)
Title: Ecological models and data (book support)
Diff between emdbook versions 1.3.4 dated 2013-03-07 and 1.3.6 dated 2014-11-25
Description: Auxiliary functions and data sets for _Ecological Models and Data_, a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0)
Author: Ben Bolker
Maintainer: Ben Bolker
emdbook-1.3.4/emdbook/DATASETS |only
emdbook-1.3.4/emdbook/TODO |only
emdbook-1.3.6/emdbook/DESCRIPTION | 17 +++++++----------
emdbook-1.3.6/emdbook/MD5 | 21 ++++++++++-----------
emdbook-1.3.6/emdbook/NAMESPACE | 7 ++++++-
emdbook-1.3.6/emdbook/NEWS |only
emdbook-1.3.6/emdbook/R/bayes.R | 1 -
emdbook-1.3.6/emdbook/R/emdbook.R | 7 +------
emdbook-1.3.6/emdbook/R/utils3d.R | 17 +++++++----------
emdbook-1.3.6/emdbook/inst/NEWS.Rd | 6 ++++++
emdbook-1.3.6/emdbook/man/apply2d.Rd | 2 +-
emdbook-1.3.6/emdbook/man/curve3d.Rd | 2 +-
emdbook-1.3.6/emdbook/man/gridsearch2d.Rd | 4 +++-
13 files changed, 42 insertions(+), 42 deletions(-)
Title: Dynamic Systems Estimation (time series package)
Diff between dse versions 2013.3-2 dated 2013-03-07 and 2014.11-1 dated 2014-11-25
Description: Package dse provides tools for multivariate, linear, time-invariant,
time series models. It includes ARMA and state-space representations,
and methods for converting between them. It also includes simulation
methods and several estimation functions. The package has functions
for looking at model roots, stability, and forecasts at different
horizons. The ARMA model representation is general, so that VAR, VARX,
ARIMA, ARMAX, ARIMAX can all be considered to be special cases. Kalman
filter and smoother estimates can be obtained from the state space
model, and state-space model reduction techniques are implemented.
An introduction and User's Guide is available in a vignette.
Author: Paul Gilbert
Maintainer: Paul Gilbert
dse-2013.3-2/dse/src-c |only
dse-2014.11-1/dse/DESCRIPTION | 40 +++++++++++-------------
dse-2014.11-1/dse/MD5 | 42 +++++++++++++-------------
dse-2014.11-1/dse/NAMESPACE | 11 ++++++
dse-2014.11-1/dse/NEWS | 21 +++++++++++++
dse-2014.11-1/dse/R/dse1.R | 35 +++++++++------------
dse-2014.11-1/dse/R/dse2.R | 18 +++++------
dse-2014.11-1/dse/build |only
dse-2014.11-1/dse/data/eg1.DSE.data.diff.rda |binary
dse-2014.11-1/dse/data/eg1.DSE.data.rda |binary
dse-2014.11-1/dse/data/egJofF.1dec93.data.rda |binary
dse-2014.11-1/dse/inst/doc/Guide.Stex | 3 -
dse-2014.11-1/dse/inst/doc/Guide.pdf |binary
dse-2014.11-1/dse/man/DSEflags.Rd | 11 ++----
dse-2014.11-1/dse/man/DSEutilities.Rd | 5 +++
dse-2014.11-1/dse/man/forecastCov.Rd | 6 ++-
dse-2014.11-1/dse/man/simulate.Rd | 2 -
dse-2014.11-1/dse/tests/dse1tst01.R | 2 -
dse-2014.11-1/dse/tests/dse1tst08.R | 6 +--
dse-2014.11-1/dse/tests/dse1tst09.R | 2 -
dse-2014.11-1/dse/tests/dse2tst2.R | 8 +++-
dse-2014.11-1/dse/tests/dse2tstgd1.R | 6 +++
dse-2014.11-1/dse/vignettes/Guide.Stex | 3 -
23 files changed, 127 insertions(+), 94 deletions(-)
Title: Bayesian Latent Class Analysis
Diff between BayesLCA versions 1.5 dated 2014-04-29 and 1.6 dated 2014-11-25
Description: Bayesian Latent Class Analysis using several different
methods.
Author: Arthur White and Brendan Murphy
Maintainer: Arthur White
DESCRIPTION | 11 ++++++-----
MD5 | 9 +++++----
inst |only
man/BayesLCA-package.Rd | 5 +++++
man/blca.Rd | 5 +++++
man/plot.blca.Rd | 5 +++++
6 files changed, 26 insertions(+), 9 deletions(-)
Title: Algorithmic Complexity for Short Strings
Diff between acss versions 0.2-4 dated 2014-06-01 and 0.2-5 dated 2014-11-25
Description: Main functionality is to provide the algorithmic complexity for
short strings, an approximation of the Kolmogorov Complexity of a short
string using the coding theorem method (see ?acss). The database containing
the complexity is provided in the data only package acss.data, this package
provides functions accessing the data such as prob_random returning the
posterior probability that a given string was produced by a random process.
In addition, two traditional (but problematic) measures of complexity are
also provided: entropy and change complexity.
Author: Nicolas Gauvrit [aut],
Henrik Singmann [aut, cre],
Fernando Soler Toscano [ctb],
Hector Zenil [ctb]
Maintainer: Henrik Singmann
acss-0.2-4/acss/tests/testthat/test-PsychMethods.R |only
acss-0.2-5/acss/DESCRIPTION | 14 -
acss-0.2-5/acss/MD5 | 30 +--
acss-0.2-5/acss/NAMESPACE | 2
acss-0.2-5/acss/NEWS |only
acss-0.2-5/acss/R/acss.R | 21 +-
acss-0.2-5/acss/R/exp1-data.R | 28 +--
acss-0.2-5/acss/R/exp2-data.R | 32 +--
acss-0.2-5/acss/R/matthews2013-data.R | 30 +--
acss-0.2-5/acss/inst |only
acss-0.2-5/acss/man/acss.Rd | 94 +++--------
acss-0.2-5/acss/man/entropy.Rd | 35 ----
acss-0.2-5/acss/man/exp1.Rd | 11 -
acss-0.2-5/acss/man/exp2.Rd | 12 -
acss-0.2-5/acss/man/matthews2013.Rd | 10 -
acss-0.2-5/acss/man/normalize_string.Rd | 36 +---
acss-0.2-5/acss/tests/testthat/test-acss.R | 158 +++++++++----------
acss-0.2-5/acss/tests/testthat/test-manuscript2014.R |only
18 files changed, 223 insertions(+), 290 deletions(-)