Tue, 25 Nov 2014

New package lucid with initial version 1.0
Package: lucid
Version: 1.0
Date: 2014-11-24
Title: Lucid Printing of Floating Point Numbers
Author: Kevin Wright
Maintainer: Kevin Wright
Description: Print vectors (and data frames) of floating point numbers using a non-scientific format optimized for human readers. Vectors of numbers are rounded using significant digits, aligned at the decimal point, and all zeros trailing the decimal point are dropped.
LazyData: yes
License: GPL-2
URL: https://github.com/kwstat/lucid
BugReports: https://github.com/kwstat/lucid/issues
VignetteBuilder: knitr
Imports: nlme
Suggests: knitr, lattice, lme4
Packaged: 2014-11-25 22:00:33 UTC; wrightkevi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 00:52:34

More information about lucid at CRAN
Permanent link

New package GMDH with initial version 1.0
Package: GMDH
Type: Package
Title: Predicting and Forecasting Time Series via GMDH-Type Neural Network Algorithms
Version: 1.0
Date: 2014-11-25
Depends: MASS, stats
Author: Osman Dag, Ceylan Yozgatligil
Maintainer: Osman Dag
Description: Group method of data handling (GMDH) - type neural network algorithm is the heuristic self-organization method for modelling the complex systems. In this package, GMDH-type neural network algorithms are applied to predict and forecast a univariate time series.
License: GPL (>= 2)
Packaged: 2014-11-25 19:14:40 UTC; osmndg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 00:48:49

More information about GMDH at CRAN
Permanent link

New package EnsembleCV with initial version 0.7
Package: EnsembleCV
Type: Package
Title: Extensible Package for Cross-Validation-Based Integration of Base Learners
Version: 0.7
Date: 2014-11-17
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani
Description: This package extends the base classes and methods of EnsembleBase package for cross-validation-based integration of base learners. Default implementation calculates average of repeated CV errors, and selects the base learner / configuration with minimum average error. The package takes advantage of the file method provided in EnsembleBase package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. The package can be extended, e.g. by adding variants of the current implementation.
License: GPL (>= 2)
Depends: EnsembleBase
Imports: parallel,methods
Packaged: 2014-11-25 21:39:34 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 00:59:47

More information about EnsembleCV at CRAN
Permanent link

Package SMR updated to version 2.0.1 with previous version 2.0 dated 2014-10-16

Title: Externally Studentized Midrange Distribution
Description: Computes the studentized midrange distribution (pdf, cdf and quantile) and generates random numbers
Author: Ben Deivide de Oliveira Batista, Daniel Furtado Ferreira
Maintainer: Daniel Furtado Ferreira

Diff between SMR versions 2.0 dated 2014-10-16 and 2.0.1 dated 2014-11-25

 DESCRIPTION |   10 +++----
 MD5         |    4 +-
 R/SMR.R     |   81 +++++++++++++++++++++++++++++++++++++++---------------------
 3 files changed, 60 insertions(+), 35 deletions(-)

More information about SMR at CRAN
Permanent link

New package gridGraphics with initial version 0.1-1
Package: gridGraphics
Title: Redraw Base Graphics Using grid Graphics
Version: 0.1-1
Authors@R: person("Paul", "Murrell", role = c("cre", "aut"), email = "paul@stat.auckland.ac.nz")
Description: Functions to convert a page of plots drawn with the graphics package into identical output drawn with the grid package. The result looks like the original graphics-based plot, but consists of grid grobs and viewports that can then be manipulated with grid functions (e.g., edit grobs and revisit viewports).
Depends: grid, graphics
Suggests: KernSmooth
SystemRequirements: ImageMagick (for testing)
License: GPL (>= 2)
URL: https://github.com/pmur002/gridgraphics
Packaged: 2014-11-25 20:01:49 UTC; EC\pmur002
Author: Paul Murrell [cre, aut]
Maintainer: Paul Murrell
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 22:24:13

More information about gridGraphics at CRAN
Permanent link

New package KODAMA with initial version 0.0.1
Package: KODAMA
Version: 0.0.1
Date: 2013-11-20
Author: Stefano Cacciatore, Claudio Luchinat, Leonardo Tenori
Maintainer: Stefano Cacciatore
Title: Knowledge discovery by accuracy maximization
Description: KODAMA (KnOwledge Discovery by Accuracy MAximization) is an unsupervised and semisupervised learning algorithm that performs feature extraction from noisy and high-dimensional data.
Depends: R (>= 2.10.0),e1071,plsgenomics,class
Suggests: rgl,
SuggestsNote: No suggestions
License: GPL (>= 2)
Packaged: 2014-11-25 15:41:39 UTC; Stefano
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 18:05:43

More information about KODAMA at CRAN
Permanent link

New package empiricalFDR.DESeq2 with initial version 1.0
Package: empiricalFDR.DESeq2
Type: Package
Title: Simulation-based False Discovery Rate in RNA-seq
Version: 1.0
Date: 2014-11-25
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz
Description: Auxiliary functions for the DESeq2 package to simulate read counts according to the null hypothesis (i.e., with empirical sample size factors, per-gene total counts and dispersions, but without effects of predictor variables) and to compute the empirical false discovery rate.
License: GPL-3
Depends: DESeq2,GenomicRanges
Packaged: 2014-11-25 15:48:11 UTC; c-monster
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 18:03:34

More information about empiricalFDR.DESeq2 at CRAN
Permanent link

Package synbreed updated to version 0.10-5 with previous version 0.10-4 dated 2014-11-11

Title: Framework for the analysis of genomic prediction data using R
Description: The package 'synbreed' was developed within the Synbreed project for synergistic plant and animal breeding (www.synbreed.tum.de). It contains a collection of functions required for genomic prediction in both plant and animal breeding. This covers data processing, data visualization and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).
Author: Valentin Wimmer, Hans-Juergen Auinger, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Valentin Wimmer

Diff between synbreed versions 0.10-4 dated 2014-11-11 and 0.10-5 dated 2014-11-25

 DESCRIPTION       |   12 ++++++------
 MD5               |    4 ++--
 R/predict.gpMod.r |    8 ++++----
 3 files changed, 12 insertions(+), 12 deletions(-)

More information about synbreed at CRAN
Permanent link

Package redcapAPI updated to version 1.1 with previous version 1.0.1 dated 2014-10-20

Title: R interface to REDCap
Description: Access data stored in REDCap databases using the Application Programming Interface (API). REDCap (Research Electronic Data CAPture) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The API allows users to access data and project meta data (such as the data dictionary) from the web programmatically. The redcapAPI package facilitates the process of accessing data with options to prepare an analysis-ready data set consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter. Initiated by Jeffrey Horner and Will Gray with contributions from Jeremy Stephens, and Will Beasley
Maintainer: Benjamin Nutter

Diff between redcapAPI versions 1.0.1 dated 2014-10-20 and 1.1 dated 2014-11-25

 DESCRIPTION               |   13 ++++----
 MD5                       |   40 ++++++++++++------------
 NAMESPACE                 |    6 +++
 NEWS                      |   11 ++++++
 R/deleteFiles.R           |    6 +--
 R/exportArms.R            |    2 -
 R/exportEvents.R          |    2 -
 R/exportFiles.R           |    6 +--
 R/exportInstruments.R     |    4 +-
 R/exportMappings.R        |    4 +-
 R/exportMetaData.R        |    2 -
 R/exportRecords.R         |   17 ++++------
 R/exportReports.R         |    6 +--
 R/exportUsers.R           |    2 -
 R/fieldToVar.R            |    4 +-
 R/importFiles.R           |    8 ++--
 R/importRecords.R         |   26 ++++++++--------
 R/recodeCheck.R           |    4 +-
 R/syncUnderscoreCodings.R |    4 +-
 R/validateImport.R        |   74 +++++++++++++++++++++++-----------------------
 man/fieldToVar.Rd         |    3 +
 21 files changed, 131 insertions(+), 113 deletions(-)

More information about redcapAPI at CRAN
Permanent link

Package mistral updated to version 1.1-1 with previous version 1.1-0 dated 2014-02-15

Title: Methods in Structural Reliability
Description: Various reliability analysis methods for: 1) computing failure probability (probability that the output of a numerical model exceeds a threshold); 2) computing the size of a sample to estimate a quantile with a confidence level.
Author: Nicolas BOUSQUET, Gilles DEFAUX, Bertrand IOOSS, Vincent MOUTOUSSAMY, Clement WALTER
Maintainer: Bertrand Iooss

Diff between mistral versions 1.1-0 dated 2014-02-15 and 1.1-1 dated 2014-11-25

 DESCRIPTION             |   10 +++++-----
 MD5                     |   32 ++++++++++++++++----------------
 R/AKMCS.R               |    2 +-
 R/MRM.R                 |    1 -
 R/MetaIS.R              |   10 +++++-----
 R/MetropolisHastings.R  |    4 ++--
 R/MonteCarlo.R          |    1 +
 R/S2MART.R              |   11 ++++++-----
 R/SMART.R               |   45 +++++++++++++++++++++++++++++----------------
 R/SubsetSimulation.R    |    2 +-
 man/AKMCS.Rd            |   23 ++++++++++++++---------
 man/MetaIS.Rd           |   25 +++++++++++++++----------
 man/Mistral-package.Rd  |    2 +-
 man/S2MART.Rd           |   15 ++++++++++-----
 man/SMART.Rd            |   20 +++++++++++++-------
 man/SubsetSimulation.Rd |   14 ++++++++++----
 man/UtoX.Rd             |   21 ++++++++++++++-------
 17 files changed, 143 insertions(+), 95 deletions(-)

More information about mistral at CRAN
Permanent link

New package maboost with initial version 1.0-0
Package: maboost
Version: 1.0-0
Date: 2014-11-01
Title: Binary and Multiclass Boosting Algorithms
Author: Tofigh Naghibi
Depends: R(>= 2.10),rpart,C50
Description: Performs binary and multiclass boosting in maximum-margin, sparse, smooth and normal settings as described in "A Boosting Framework on Grounds of Online Learning" by T. Naghibi and B. Pfister, (2014). For further information regarding the algorithms, please refer to http://arxiv.org/abs/1409.7202
Maintainer: Tofigh Naghibi
License: GPL (>= 2)
Packaged: 2014-11-25 15:05:38 UTC; tofighn
Repository: CRAN
Date/Publication: 2014-11-25 17:03:41
Collate: 'maboost-package.r' 'maboost.R' 'maboost.default.R' 'maboost.formula.R' 'maboost.machine.bin.R' 'maboost.machine.multi.R' 'predict.maboost.R' 'print.maboost.R' 'projsplx.R' 'projsplx_k.R' 'summary.maboost.R' 'update.maboost.R' 'varplot.maboost.R'
NeedsCompilation: no

More information about maboost at CRAN
Permanent link

Package effects updated to version 3.0-2 with previous version 3.0-1 dated 2014-08-14

Title: Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models
Description: Graphical and tabular effect displays, e.g., of interactions, for various statistical models with linear predictors.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Michael Friendly [aut], Jangman Hong [aut], Robert Andersen [ctb], David Firth [ctb], Steve Taylor [ctb]
Maintainer: John Fox

Diff between effects versions 3.0-1 dated 2014-08-14 and 3.0-2 dated 2014-11-25

 DESCRIPTION            |   17 
 MD5                    |   24 
 NAMESPACE              |   10 
 NEWS                   |    8 
 R/Effect.R             |    9 
 R/effectsmer.R         |   18 
 R/effectspoLCA.R       |    1 
 R/plot-methods.R       | 2339 ++++++++++++++++++++++++-------------------------
 R/plot.effpoly.R       |    1 
 R/utilities.R          |    1 
 man/effect.Rd          |    9 
 man/effects-package.Rd |    4 
 man/summary.effect.Rd  |    8 
 13 files changed, 1243 insertions(+), 1206 deletions(-)

More information about effects at CRAN
Permanent link

Package dslice updated to version 1.1.4 with previous version 1.1.3 dated 2014-11-24

Title: Dynamic slicing
Description: Dynamic slicing is a method designed for dependency detection between a categorical variable and a continuous variable. It could be applied for non-parametric hypothesis testing and gene set enrichment analysis.
Author: Chao Ye and Bo Jiang
Maintainer: Chao Ye

Diff between dslice versions 1.1.3 dated 2014-11-24 and 1.1.4 dated 2014-11-25

 dslice-1.1.3/dslice/vignettes/slice.eps  |only
 dslice-1.1.4/dslice/DESCRIPTION          |    6 
 dslice-1.1.4/dslice/MD5                  |   11 
 dslice-1.1.4/dslice/inst/doc/dslice.R    |   31 +
 dslice-1.1.4/dslice/inst/doc/dslice.Rnw  |  734 ++++++++++++++++---------------
 dslice-1.1.4/dslice/inst/doc/dslice.pdf  |binary
 dslice-1.1.4/dslice/vignettes/dslice.Rnw |  734 ++++++++++++++++---------------
 7 files changed, 801 insertions(+), 715 deletions(-)

More information about dslice at CRAN
Permanent link

Package diptest updated to version 0.75-6 with previous version 0.75-5 dated 2013-07-23

Title: Hartigan's dip test statistic for unimodality - corrected code
Description: Compute Hartigan's dip test statistic for unimodality / multimodality and provide a test with simulation based p-values.
Author: Martin Maechler (originally from Fortran and S-plus by Dario Ringach, NYU.edu)
Maintainer: Martin Maechler

Diff between diptest versions 0.75-5 dated 2013-07-23 and 0.75-6 dated 2014-11-25

 diptest-0.75-5/diptest/vignettes/diptest-issues.aux |only
 diptest-0.75-5/diptest/vignettes/diptest-issues.bbl |only
 diptest-0.75-5/diptest/vignettes/diptest-issues.blg |only
 diptest-0.75-5/diptest/vignettes/diptest-issues.log |only
 diptest-0.75-5/diptest/vignettes/diptest-issues.out |only
 diptest-0.75-6/diptest/DESCRIPTION                  |   12 +++----
 diptest-0.75-6/diptest/MD5                          |   28 +++++++---------
 diptest-0.75-6/diptest/R/dip.R                      |   12 +------
 diptest-0.75-6/diptest/R/dipTest.R                  |    2 -
 diptest-0.75-6/diptest/build                        |only
 diptest-0.75-6/diptest/inst/doc/diptest-issues.R    |    6 +--
 diptest-0.75-6/diptest/inst/doc/diptest-issues.Rnw  |    1 
 diptest-0.75-6/diptest/inst/doc/diptest-issues.pdf  |binary
 diptest-0.75-6/diptest/inst/doc/diptest.bib         |only
 diptest-0.75-6/diptest/inst/doc/myVignette.sty      |only
 diptest-0.75-6/diptest/man/dip.test.Rd              |    6 +++
 diptest-0.75-6/diptest/tests/ex1.Rout.save          |   19 ++++++-----
 diptest-0.75-6/diptest/tests/sim1.Rout.save         |   33 +++++++++-----------
 diptest-0.75-6/diptest/vignettes/diptest-issues.Rnw |    8 ++--
 19 files changed, 62 insertions(+), 65 deletions(-)

More information about diptest at CRAN
Permanent link

Package StressStrength updated to version 1.0.1 with previous version 1.0 dated 2012-01-16

Title: Computation and estimation of reliability of stress-strength models
Description: The package provide functions for computing the reliability of stress-strength models and for building two-sided or one-sided confidence intervals according to different approximate procedures
Author: Alessandro Barbiero , Riccardo Inchingolo
Maintainer: Alessandro Barbiero

Diff between StressStrength versions 1.0 dated 2012-01-16 and 1.0.1 dated 2014-11-25

 StressStrength-1.0.1/StressStrength/DESCRIPTION |   17 +++++++----------
 StressStrength-1.0.1/StressStrength/MD5         |    4 ++--
 StressStrength-1.0.1/StressStrength/NAMESPACE   |only
 StressStrength-1.0/StressStrength/doc           |only
 4 files changed, 9 insertions(+), 12 deletions(-)

More information about StressStrength at CRAN
Permanent link

Package metrumrg (with last version 5.55) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-02-18 5.55
2013-11-26 5.54
2013-06-06 5.50
2013-05-23 5.49
2013-05-01 5.45
2013-04-24 5.44
2013-03-28 5.36
2013-03-21 5.34
2012-11-27 5.27
2012-11-24 5.26
2012-11-05 5.25
2012-10-25 5.24
2012-10-01 5.23
2012-05-05 5.17
2012-02-09 5.13
2011-11-11 5.5
2011-10-24 5.3
2011-09-20 5.2
2011-09-08 5.1

Permanent link
Package audited (with last version 1.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-09-20 1.9

Permanent link
Package R0 updated to version 1.2-5 with previous version 1.2-4 dated 2013-12-13

Title: Estimation of R0 and real-time reproduction number from epidemics
Description: This package is designed to estimate reproduction numbers for disease outbreak, based on incidence data. It implements several documented methods. It is therefore possible to compare estimations according to the methods used. Depending on the methods requested by user, basic reproduction number (commonly denoted as R0) or real-time reproduction number (referred to as R(t)) is computed, along with a 95% Confidence Interval. Plotting outputs will give different graphs depending on the methods requested : basic reproductive number estimations will only show the epidemic curve (collected data) and an adjusted model, whereas real-time methods will also show the R(t) variations throughout the outbreak time period. Sensitivity analysis tools are also provided, and allow for investigating effects of varying Generation Time distribution or time window on estimates.
Author: Pierre-Yves Boelle, Thomas Obadia
Maintainer: Thomas Obadia

Diff between R0 versions 1.2-4 dated 2013-12-13 and 1.2-5 dated 2014-11-25

 DESCRIPTION                   |    8 -
 MD5                           |   30 +++----
 R/est.GT.R                    |    2 
 R/sa.GT.R                     |    2 
 R/sa.time.R                   |    2 
 data/GT.chld.hsld.rda         |binary
 data/Germany.1918.rda         |binary
 data/H1N1.serial.interval.rda |binary
 demo/epid.demo.R              |    6 -
 man/R0-package.Rd             |   48 +++++------
 man/est.GT.Rd                 |    2 
 man/plot.R0.S.Rd              |    2 
 man/sa.GT.Rd                  |    6 -
 man/sa.time.Rd                |   12 +-
 man/sensitivity.analysis.Rd   |  178 +++++++++++++++++++++---------------------
 tests/sensitivity.analysis.R  |    4 
 16 files changed, 151 insertions(+), 151 deletions(-)

More information about R0 at CRAN
Permanent link

Package questionr updated to version 0.4.2 with previous version 0.4.1 dated 2014-07-16

Title: Functions to make surveys processing easier.
Description: This package provides some convenience functions to make the processing and analysis of surveys easier.
Author: Julien Barnier [aut, cre], François Briatte [aut], Joseph Larmarange [aut]
Maintainer: Julien Barnier

Diff between questionr versions 0.4.1 dated 2014-07-16 and 0.4.2 dated 2014-11-25

 questionr-0.4.1/questionr/R/imca.r                                   |only
 questionr-0.4.1/questionr/inst/icut                                  |only
 questionr-0.4.1/questionr/inst/imca                                  |only
 questionr-0.4.1/questionr/inst/iorder                                |only
 questionr-0.4.1/questionr/inst/irec                                  |only
 questionr-0.4.1/questionr/man/imca.Rd                                |only
 questionr-0.4.2/questionr/DESCRIPTION                                |   16 
 questionr-0.4.2/questionr/MD5                                        |  143 ++----
 questionr-0.4.2/questionr/NAMESPACE                                  |   14 
 questionr-0.4.2/questionr/NEWS                                       |   12 
 questionr-0.4.2/questionr/R/describe.r                               |    4 
 questionr-0.4.2/questionr/R/icut.r                                   |  228 +++++++++
 questionr-0.4.2/questionr/R/iorder.R                                 |  176 +++++++
 questionr-0.4.2/questionr/R/irec.r                                   |  234 +++++++++-
 questionr-0.4.2/questionr/R/lookfor.r                                |    4 
 questionr-0.4.2/questionr/R/odds.ratio.r                             |    8 
 questionr-0.4.2/questionr/R/recode.r                                 |    2 
 questionr-0.4.2/questionr/R/table.multi.r                            |   48 +-
 questionr-0.4.2/questionr/R/tables.r                                 |   12 
 questionr-0.4.2/questionr/R/tools.r                                  |    7 
 questionr-0.4.2/questionr/R/utils.r                                  |    4 
 questionr-0.4.2/questionr/data/happy.rda                             |binary
 questionr-0.4.2/questionr/data/hdv2003.rda                           |binary
 questionr-0.4.2/questionr/data/rp99.rda                              |binary
 questionr-0.4.2/questionr/inst/po/en/LC_MESSAGES/R-questionr.mo      |binary
 questionr-0.4.2/questionr/inst/po/en@quot/LC_MESSAGES/R-questionr.mo |binary
 questionr-0.4.2/questionr/inst/po/fr/LC_MESSAGES/R-questionr.mo      |binary
 questionr-0.4.2/questionr/inst/shiny                                 |only
 questionr-0.4.2/questionr/man/addNAstr.Rd                            |   37 -
 questionr-0.4.2/questionr/man/chisq.residuals.Rd                     |   28 -
 questionr-0.4.2/questionr/man/clipcopy.Rd                            |   53 --
 questionr-0.4.2/questionr/man/cprop.Rd                               |   32 -
 questionr-0.4.2/questionr/man/cramer.v.Rd                            |    8 
 questionr-0.4.2/questionr/man/cross.multi.table.Rd                   |   40 +
 questionr-0.4.2/questionr/man/describe.Rd                            |   26 -
 questionr-0.4.2/questionr/man/duplicated2.Rd                         |   25 -
 questionr-0.4.2/questionr/man/format.proptab.Rd                      |   26 -
 questionr-0.4.2/questionr/man/freq.Rd                                |   33 -
 questionr-0.4.2/questionr/man/freq.na.Rd                             |   17 
 questionr-0.4.2/questionr/man/hdv2003.Rd                             |    8 
 questionr-0.4.2/questionr/man/icut.Rd                                |   21 
 questionr-0.4.2/questionr/man/iorder.Rd                              |   25 -
 questionr-0.4.2/questionr/man/irec.Rd                                |   21 
 questionr-0.4.2/questionr/man/lookfor.Rd                             |   51 --
 questionr-0.4.2/questionr/man/multi.split.Rd                         |   34 -
 questionr-0.4.2/questionr/man/multi.table.Rd                         |   55 +-
 questionr-0.4.2/questionr/man/na.rm.Rd                               |   25 -
 questionr-0.4.2/questionr/man/odds.ratio.Rd                          |   62 +-
 questionr-0.4.2/questionr/man/print.proptab.Rd                       |   22 
 questionr-0.4.2/questionr/man/prop.Rd                                |   32 -
 questionr-0.4.2/questionr/man/qload.Rd                               |   35 -
 questionr-0.4.2/questionr/man/qscan.Rd                               |   29 -
 questionr-0.4.2/questionr/man/quant.cut.Rd                           |   32 -
 questionr-0.4.2/questionr/man/questionr.Rd                           |    3 
 questionr-0.4.2/questionr/man/recode.na.Rd                           |   37 -
 questionr-0.4.2/questionr/man/rename.variable.Rd                     |   13 
 questionr-0.4.2/questionr/man/rm.unused.levels.Rd                    |   20 
 questionr-0.4.2/questionr/man/rp99.Rd                                |    6 
 questionr-0.4.2/questionr/man/rprop.Rd                               |   32 -
 questionr-0.4.2/questionr/man/wtd.mean.Rd                            |   33 -
 questionr-0.4.2/questionr/man/wtd.table.Rd                           |   36 -
 questionr-0.4.2/questionr/po/R-en.po                                 |  100 ++++
 questionr-0.4.2/questionr/po/R-fr.mo                                 |only
 questionr-0.4.2/questionr/po/R-fr.po                                 |  109 ++++
 questionr-0.4.2/questionr/po/R-questionr.pot                         |   94 +++-
 65 files changed, 1475 insertions(+), 697 deletions(-)

More information about questionr at CRAN
Permanent link

Package PrevMap updated to version 1.1 with previous version 1.0 dated 2014-10-30

Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: The PrevMap package provides functions for both likelihood-based and Bayesian analysis of spatially referenced prevalence data. 'PrevMap' is also an extension of the 'geoR' package which should be installed first together with the 'maxLik', 'raster' and 'pdist' packages.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi

Diff between PrevMap versions 1.0 dated 2014-10-30 and 1.1 dated 2014-11-25

 DESCRIPTION                        |   11 +-
 MD5                                |   18 +--
 NAMESPACE                          |    3 
 R/foo.R                            |  203 ++++++++++++++++++++++++++++++++++---
 man/binomial.logistic.MCML.Rd      |    5 
 man/continuous.sample.Rd           |only
 man/discrete.sample.Rd             |only
 man/spatial.pred.binomial.Bayes.Rd |    2 
 man/spatial.pred.binomial.MCML.Rd  |    2 
 man/spatial.pred.linear.Bayes.Rd   |    2 
 man/spatial.pred.linear.MLE.Rd     |    2 
 11 files changed, 211 insertions(+), 37 deletions(-)

More information about PrevMap at CRAN
Permanent link

Package kinfit updated to version 1.1.13 with previous version 1.1.12 dated 2013-11-27

Title: Routines for fitting kinetic models to chemical degradation data
Description: Simple calculation routines based on the FOCUS Kinetics Report (2006). Only kinetic models for parent only datasets are included (no metabolite formation/decline or multicompartment kinetics). Please note that no warranty is implied for correctness of results or fitness for a particular purpose. This package is not actively developed at the moment. Please check the mkin package for an actively maintained package for kinetic evaluations of degradation data
Author: Johannes Ranke, with contributions from Katrin Lindenberger
Maintainer: Johannes Ranke

Diff between kinfit versions 1.1.12 dated 2013-11-27 and 1.1.13 dated 2014-11-25

 kinfit-1.1.12/kinfit/vignettes/Rplots.pdf                |only
 kinfit-1.1.13/kinfit/DESCRIPTION                         |   15 -
 kinfit-1.1.13/kinfit/MD5                                 |   39 +-
 kinfit-1.1.13/kinfit/build/vignette.rds                  |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_A.rda               |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_B.rda               |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_C.rda               |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_D.rda               |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_DFOP_ref_A_to_B.rda |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_E.rda               |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_F.rda               |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_FOMC_ref_A_to_F.rda |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_HS_ref_A_to_F.rda   |binary
 kinfit-1.1.13/kinfit/data/FOCUS_2006_SFO_ref_A_to_F.rda  |binary
 kinfit-1.1.13/kinfit/inst/doc/examples.pdf               |binary
 kinfit-1.1.13/kinfit/inst/doc/kinfit.Rnw                 |    2 
 kinfit-1.1.13/kinfit/inst/doc/kinfit.pdf                 |binary
 kinfit-1.1.13/kinfit/man/DFOP.Rd                         |    2 
 kinfit-1.1.13/kinfit/tests/test_FOCUS_2006_A.R           |    2 
 kinfit-1.1.13/kinfit/tests/test_FOCUS_2006_A.Rout.save   |  198 +++++++--------
 kinfit-1.1.13/kinfit/vignettes/kinfit.Rnw                |    2 
 21 files changed, 132 insertions(+), 128 deletions(-)

More information about kinfit at CRAN
Permanent link

Package Julia updated to version 1.1 with previous version 1.0 dated 2011-02-12

Title: Fractal Image Data Generator
Description: Generates image data for fractals (Julia and Mandelbrot sets) on the complex plane in the given region and resolution.
Author: Mehmet Suzen [aut, main]
Maintainer: Mehmet Suzen

Diff between Julia versions 1.0 dated 2011-02-12 and 1.1 dated 2014-11-25

 DESCRIPTION          |   11 ++++++-----
 MD5                  |   10 +++++-----
 man/Julia-package.Rd |    8 +++++---
 man/JuliaIterate.Rd  |   17 ++++++-----------
 man/MandelImage.Rd   |   10 +++-------
 man/MandelIterate.Rd |   26 +++++++-------------------
 6 files changed, 32 insertions(+), 50 deletions(-)

More information about Julia at CRAN
Permanent link

New package IRTShiny with initial version 1.0
Package: IRTShiny
Type: Package
Title: Item Response Theory via Shiny
Version: 1.0
Date: 2014-11-24
Author: William Kyle Hamilton , Atsushi Mizumoto
Maintainer: William Kyle Hamilton
Description: Interactive shiny application for running Item Response Theory analysis.
License: GPL-3
Imports: shiny, shinyAce, beeswarm, CTT, ltm, parallel,
Suggests: psych
LazyData: true
Packaged: 2014-11-25 08:29:49 UTC; Kyle
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 11:33:45

More information about IRTShiny at CRAN
Permanent link

Package distrMod updated to version 2.5.3 with previous version 2.5.2 dated 2013-09-12

Title: Object Oriented Implementation of Probability Models
Description: Object oriented implementation of probability models based on packages 'distr' and 'distrEx'
Author: Matthias Kohl, Peter Ruckdeschel
Maintainer: Peter Ruckdeschel

Diff between distrMod versions 2.5.2 dated 2013-09-12 and 2.5.3 dated 2014-11-25

 distrMod-2.5.2/distrMod/vignettes/Rplots.pdf      |only
 distrMod-2.5.3/distrMod/DESCRIPTION               |   19 ++++++++++---------
 distrMod-2.5.3/distrMod/MD5                       |   13 +++++++------
 distrMod-2.5.3/distrMod/NAMESPACE                 |    4 +++-
 distrMod-2.5.3/distrMod/R/SimpleL2ParamFamilies.R |    4 ++--
 distrMod-2.5.3/distrMod/build                     |only
 distrMod-2.5.3/distrMod/inst/NEWS                 |   10 ++++++++++
 distrMod-2.5.3/distrMod/inst/doc/distrMod.pdf     |binary
 distrMod-2.5.3/distrMod/tests                     |only
 9 files changed, 32 insertions(+), 18 deletions(-)

More information about distrMod at CRAN
Permanent link

Package DiscreteInverseWeibull updated to version 1.0.1 with previous version 1.0 dated 2012-10-19

Title: Discrete inverse Weibull distribution
Description: Probability mass function, distribution function, quantile function, random generation and parameter estimation for the discrete inverse Weibull distribution
Author: Alessandro Barbiero, Riccardo Inchingolo, Mario Samigli
Maintainer: Alessandro Barbiero

Diff between DiscreteInverseWeibull versions 1.0 dated 2012-10-19 and 1.0.1 dated 2014-11-25

 DiscreteInverseWeibull-1.0.1/DiscreteInverseWeibull/DESCRIPTION         |   15 ++++------
 DiscreteInverseWeibull-1.0.1/DiscreteInverseWeibull/MD5                 |    7 ++--
 DiscreteInverseWeibull-1.0.1/DiscreteInverseWeibull/NAMESPACE           |    1 
 DiscreteInverseWeibull-1.0.1/DiscreteInverseWeibull/man/ahrdiweibull.Rd |    2 -
 DiscreteInverseWeibull-1.0/DiscreteInverseWeibull/doc                   |only
 5 files changed, 12 insertions(+), 13 deletions(-)

More information about DiscreteInverseWeibull at CRAN
Permanent link

Package GCPM (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-11-25 1.1

Permanent link
Package vcrpart updated to version 0.2-3 with previous version 0.2-2 dated 2014-11-07

Title: Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression.
Author: Reto Buergin [aut, cre, cph], Gilbert Ritschard [ctb, ths]
Maintainer: Reto Buergin

Diff between vcrpart versions 0.2-2 dated 2014-11-07 and 0.2-3 dated 2014-11-25

 DESCRIPTION         |    8 -
 MD5                 |   27 ++---
 NAMESPACE           |    1 
 NEWS                |   11 ++
 R/otsplot.R         |   14 ++
 R/tvcm-utils.R      |  256 ++++++++++++++++++++++++++++------------------------
 R/utils.R           |   30 +-----
 inst/CITATION       |   11 +-
 man/contr-wsum.Rd   |only
 man/fvcm.Rd         |   11 +-
 man/olmm-control.Rd |    8 -
 man/olmm-gefp.Rd    |   44 +++-----
 man/olmm-methods.Rd |    2 
 man/otsplot.Rd      |    4 
 man/tvcolmm.Rd      |    2 
 15 files changed, 226 insertions(+), 203 deletions(-)

More information about vcrpart at CRAN
Permanent link

Package soma updated to version 1.1.1 with previous version 1.1.0 dated 2011-07-28

Title: General-Purpose Optimisation With the Self-Organising Migrating Algorithm
Description: This package provides an R implementation of the Self-Organising Migrating Algorithm, a general-purpose, stochastic optimisation algorithm. The approach is similar to that of genetic algorithms, although it is based on the idea of a series of ``migrations'' by a fixed set of individuals, rather than the development of successive generations. It can be applied to any cost-minimisation problem with a bounded parameter space, and is robust to local minima.
Author: Jon Clayden; based on the work of Ivan Zelinka
Maintainer: Jon Clayden

Diff between soma versions 1.1.0 dated 2011-07-28 and 1.1.1 dated 2014-11-25

 soma-1.1.0/soma/LICENCE     |only
 soma-1.1.1/soma/DESCRIPTION |   25 ++++++++++---------------
 soma-1.1.1/soma/MD5         |only
 soma-1.1.1/soma/NEWS        |    7 +++++++
 soma-1.1.1/soma/README.md   |only
 soma-1.1.1/soma/man/soma.Rd |    2 +-
 6 files changed, 18 insertions(+), 16 deletions(-)

More information about soma at CRAN
Permanent link

New package USAboundaries with initial version 0.1
Package: USAboundaries
Type: Package
Title: Historical boundaries of the United States of America, 1629-2000
Date: 2014
Version: 0.1
Authors@R: c(person("Lincoln", "Mullen", email = "lincoln@lincolnmullen.com", role = c("aut", "cre")), person("Dr. William M. Scholl Center for American History and Culture, The Newberry Library", role = c("cph")))
Description: This package provides spatial objects with the boundaries of states or counties in the United States of America from 1629 to 2000. It provides data from the Atlas of Historical County Boundaries.
License: CC BY-NC-SA 4.0
LazyData: true
LazyDataCompression: xz
URL: https://github.com/ropensci/USAboundaries
BugReports: https://github.com/ropensci/USAboundaries/issues
Depends: R (>= 3.1.1),
Imports: assertthat (>= 0.1), dplyr (>= 0.3.0.1), ggplot2 (>= 1.0.0), lubridate (>= 1.3.3), maptools (>= 0.8-30), rgeos (>= 0.3-8), sp (>= 1.0.15)
Suggests: knitr, mapproj, testthat (>= 0.9.1)
VignetteBuilder: knitr
Packaged: 2014-11-24 18:25:13 UTC; lmullen
Author: Lincoln Mullen [aut, cre], Dr. William M. Scholl Center for American History and Culture, The Newberry Library [cph]
Maintainer: Lincoln Mullen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 09:42:09

More information about USAboundaries at CRAN
Permanent link

Package ore updated to version 1.0.4 with previous version 1.0.1 dated 2014-10-21

Title: An R Interface to the Oniguruma Regular Expression Library
Description: Provides an alternative to R's built-in functionality for handling regular expressions, based on the Oniguruma library. It offers first-class compiled regex objects, partial matching and function-based substitutions, amongst other features.
Author: Jon Clayden, based on Onigmo by K. Kosako and K. Takata
Maintainer: Jon Clayden

Diff between ore versions 1.0.1 dated 2014-10-21 and 1.0.4 dated 2014-11-25

 DESCRIPTION                  |    9 -
 MD5                          |   28 ++--
 NAMESPACE                    |    2 
 NEWS                         |   26 ++++
 R/match.R                    |   68 ++--------
 README.md                    |    2 
 man/matches.Rd               |    8 +
 src/Makevars                 |    2 
 src/main.c                   |  267 ++++++++++++++++++++++++++++++++++++-------
 src/main.h                   |   22 +++
 src/onig/regint.h            |    4 
 src/onig/regparse.c          |    9 -
 src/onig/st.c                |   16 +-
 src/onig/st.h                |    2 
 tests/testthat/test-15-rex.R |   37 +++--
 15 files changed, 359 insertions(+), 143 deletions(-)

More information about ore at CRAN
Permanent link

New package musicNMR with initial version 0.0.2
Package: musicNMR
Version: 0.0.2
Date: 2013-11-21
Author: Stefano Cacciatore, Edoardo Saccenti, Mario Piccioli
Maintainer: Stefano Cacciatore
Title: Conversion of Nuclear Magnetic Resonance spectrum in audio file
Description: This package is a collection of function for converting and modifying mono dimensional nuclear magnetic resonance spectra.
Depends: R (>= 2.10.0), seewave
Suggests: plsgenomics
SuggestsNote: No suggestions
License: GPL (>= 2)
Packaged: 2014-11-25 06:58:47 UTC; Stefano
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 09:50:06

More information about musicNMR at CRAN
Permanent link

Package dataframes2xls updated to version 0.4.6 with previous version 0.4.5 dated 2011-05-03

Title: dataframes2xls writes data frames to xls files
Description: dataframes2xls writes data frames to xls files. It supports multiple sheets and basic formatting.
Author: Guido van Steen
Maintainer: Guido van Steen

Diff between dataframes2xls versions 0.4.5 dated 2011-05-03 and 0.4.6 dated 2014-11-25

 DESCRIPTION |   13 +++++++------
 LICENSE     |   13 +++----------
 MD5         |only
 3 files changed, 10 insertions(+), 16 deletions(-)

More information about dataframes2xls at CRAN
Permanent link

New package cjoint with initial version 1.0.2
Package: cjoint
Version: 1.0.2
Date: 2014-10-18
Title: AMCE Estimator for Conjoint Experiments
Author: Anton Strezhnev, Jens Hainmueller, Daniel Hopkins, Teppei Yamamoto
Maintainer: Anton Strezhnev
Depends: R (>= 2.0.0), sandwich, lmtest, ggplot2
Description: An R implementation of the Average Marginal Component-specific Effects (AMCE) estimator presented in Hainmueller, J., Hopkins, D., and Yamamoto T. (2014) Causal Inference in Conjoint Analysis: Understanding Multi-Dimensional Choices via Stated Preference Experiments. Political Analysis 22(1):1-30.
License: GPL (>= 2)
Packaged: 2014-11-25 07:53:08 UTC; anton
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 09:24:01

More information about cjoint at CRAN
Permanent link

Package bipartite updated to version 2.05 with previous version 2.04 dated 2014-03-25

Title: Visualising bipartite networks and calculating some (ecological) indices.
Description: Bipartite provides functions to visualise webs and calculate a series of indices commonly used to describe pattern in ecological webs. It focuses on webs consisting of only two trophic levels, e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the webs topology.
Author: Carsten F. Dormann, Jochen Fruend and Bernd Gruber, with additional code from Mariano Devoto, Jose Iriondo, Rouven Strauss and Diego Vazquez, also based on C-code developed by Nils Bluethgen, Aaron Clauset/Rouven Strauss and Miguel Rodriguez-Girones.
Maintainer: Carsten F. Dormann

Diff between bipartite versions 2.04 dated 2014-03-25 and 2.05 dated 2014-11-25

 bipartite-2.04/bipartite/R/nested.R                    |only
 bipartite-2.04/bipartite/R/vaznull.r                   |only
 bipartite-2.05/bipartite/DESCRIPTION                   |    8 
 bipartite-2.05/bipartite/MD5                           |   48 ++--
 bipartite-2.05/bipartite/NAMESPACE                     |    2 
 bipartite-2.05/bipartite/R/as.one.mode.r               |    4 
 bipartite-2.05/bipartite/R/mgen.R                      |only
 bipartite-2.05/bipartite/R/nested.r                    |only
 bipartite-2.05/bipartite/R/nestedcontribution.R        |only
 bipartite-2.05/bipartite/R/networklevel.R              |    4 
 bipartite-2.05/bipartite/R/nullmodel.r                 |   24 +-
 bipartite-2.05/bipartite/R/second.extinct.R            |  201 ++++++++---------
 bipartite-2.05/bipartite/R/vaznull.R                   |only
 bipartite-2.05/bipartite/inst/doc/Dormann2008Rnews.pdf |binary
 bipartite-2.05/bipartite/man/C.score.Rd                |    2 
 bipartite-2.05/bipartite/man/ND.rd                     |  201 ++++++++---------
 bipartite-2.05/bipartite/man/bipartite-package.Rd      |   15 +
 bipartite-2.05/bipartite/man/computeModules.Rd         |    4 
 bipartite-2.05/bipartite/man/discrepancy.Rd            |   13 -
 bipartite-2.05/bipartite/man/mgen.Rd                   |only
 bipartite-2.05/bipartite/man/nested.Rd                 |    2 
 bipartite-2.05/bipartite/man/nestedcontribution.Rd     |only
 bipartite-2.05/bipartite/man/nestedrank.Rd             |  132 +++++------
 bipartite-2.05/bipartite/man/networklevel.Rd           |   12 -
 bipartite-2.05/bipartite/man/nullmodel.rd              |   15 -
 bipartite-2.05/bipartite/man/r2dexternal.Rd            |    2 
 bipartite-2.05/bipartite/man/swap.web.Rd               |   33 --
 bipartite-2.05/bipartite/man/vaznull.rd                |   37 +--
 bipartite-2.05/bipartite/man/vazquez.example.rd        |   28 +-
 29 files changed, 397 insertions(+), 390 deletions(-)

More information about bipartite at CRAN
Permanent link

Package SweaveListingUtils updated to version 0.6.2 with previous version 0.6.1 dated 2013-02-09

Title: Utilities for Sweave together with TeX listings package
Description: provides utilities for defining R / Rd as Tex-package-listings "language" and including R / Rd source file (sniplets) copied from R-forge in its most recent version (or another url) thereby avoiding inconsistencies between vignette and documented source code
Author: Peter Ruckdeschel
Maintainer: Peter Ruckdeschel

Diff between SweaveListingUtils versions 0.6.1 dated 2013-02-09 and 0.6.2 dated 2014-11-25

 SweaveListingUtils-0.6.1/SweaveListingUtils/SweaveListingUtils-Ex.R                 |only
 SweaveListingUtils-0.6.1/SweaveListingUtils/tests                                   |only
 SweaveListingUtils-0.6.2/SweaveListingUtils/DESCRIPTION                             |   29 ++++------
 SweaveListingUtils-0.6.2/SweaveListingUtils/MD5                                     |   18 +++---
 SweaveListingUtils-0.6.2/SweaveListingUtils/R/SweaveListingOptions.R                |    4 -
 SweaveListingUtils-0.6.2/SweaveListingUtils/build                                   |only
 SweaveListingUtils-0.6.2/SweaveListingUtils/inst/NEWS                               |   14 ++++
 SweaveListingUtils-0.6.2/SweaveListingUtils/inst/doc/ExampleSweaveListingUtils.R    |only
 SweaveListingUtils-0.6.2/SweaveListingUtils/inst/doc/ExampleSweaveListingUtils.Rnw  |    6 +-
 SweaveListingUtils-0.6.2/SweaveListingUtils/inst/doc/ExampleSweaveListingUtils.pdf  |binary
 SweaveListingUtils-0.6.2/SweaveListingUtils/man/0SweaveListingUtils-package.Rd      |    8 +-
 SweaveListingUtils-0.6.2/SweaveListingUtils/vignettes/ExampleSweaveListingUtils.Rnw |    6 +-
 12 files changed, 48 insertions(+), 37 deletions(-)

More information about SweaveListingUtils at CRAN
Permanent link

Package summarytools updated to version 0.2 with previous version 0.1 dated 2014-08-10

Title: Dataframe Summaries, Frequency Tables and Numerical Summaries with Customizable Output
Description: Includes 3 summarizing functions; one for categorical data (freq), one for numerical (uni or multidimensional) data (desc), and one exclusively for dataframes. 'freq' generates frequency tables with valid and total proportions. 'desc' generates common central tendency statistics and measures of dispersion for numerical data. 'dfSummary' will generate a table containing as many rows as there are columns, each row giving variable information (class and type), labels if any, common statistics for numerical data and frequency tables for any type of data, along with number and proportion of valid (non-missing) values.
Author: Dominic Comtois
Maintainer: Dominic Comtois

Diff between summarytools versions 0.1 dated 2014-08-10 and 0.2 dated 2014-11-25

 summarytools-0.1/summarytools/man/frequencies.Rd |only
 summarytools-0.1/summarytools/man/properties.Rd  |only
 summarytools-0.1/summarytools/man/unistats.Rd    |only
 summarytools-0.2/summarytools/DESCRIPTION        |   21 
 summarytools-0.2/summarytools/MD5                |   14 
 summarytools-0.2/summarytools/NAMESPACE          |    2 
 summarytools-0.2/summarytools/NEWS               |only
 summarytools-0.2/summarytools/R/summarytools.R   |  605 +++++++++++------------
 summarytools-0.2/summarytools/man/desc.Rd        |only
 summarytools-0.2/summarytools/man/dfSummary.Rd   |   17 
 summarytools-0.2/summarytools/man/freq.Rd        |only
 11 files changed, 327 insertions(+), 332 deletions(-)

More information about summarytools at CRAN
Permanent link

Package setRNG updated to version 2013.9-1 with previous version 2011.11-2 dated 2012-03-27

Title: Set (Normal) Random Number Generator and Seed
Description: SetRNG provides utilities to help set and record the setting of the seed and the uniform and normal generators used when a random experiment is run. The utilities can be used in other functions that do random experiments to simplify recording and/or setting all the necessary information for reproducibility. See the vignette and reference manual for examples.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between setRNG versions 2011.11-2 dated 2012-03-27 and 2013.9-1 dated 2014-11-25

 setRNG-2011.11-2/setRNG/S                  |only
 setRNG-2013.9-1/setRNG/DESCRIPTION         |   22 ++++++++++------------
 setRNG-2013.9-1/setRNG/MD5                 |   10 +++++-----
 setRNG-2013.9-1/setRNG/NEWS                |    4 ++++
 setRNG-2013.9-1/setRNG/build               |only
 setRNG-2013.9-1/setRNG/inst/doc/setRNG.pdf |binary
 setRNG-2013.9-1/setRNG/man/getRNG.Rd       |    2 +-
 7 files changed, 20 insertions(+), 18 deletions(-)

More information about setRNG at CRAN
Permanent link

Package rstiefel updated to version 0.10 with previous version 0.9 dated 2012-01-12

Title: Random orthonormal matrix generation on the Stiefel manifold
Description: This package simulates random orthonormal matrices from linear and quadratic exponential family distributions on the Stiefel manifold. The most general type of distribution covered is the matrix-variate Bingham-von Mises-Fisher distribution. Most of the simulation methods are presented in Hoff(2009) "Simulation of the Matrix Bingham-von Mises-Fisher Distribution, With Applications to Multivariate and Relational Data."
Author: Peter Hoff
Maintainer: Peter Hoff

Diff between rstiefel versions 0.9 dated 2012-01-12 and 0.10 dated 2014-11-25

 rstiefel-0.10/rstiefel/DESCRIPTION               |   18 ++----
 rstiefel-0.10/rstiefel/MD5                       |   17 +++---
 rstiefel-0.10/rstiefel/R/rbing.vector.gibbs.R    |    2 
 rstiefel-0.10/rstiefel/R/rmf.vector.R            |    2 
 rstiefel-0.10/rstiefel/build                     |only
 rstiefel-0.10/rstiefel/inst/doc/rstiefel.R       |only
 rstiefel-0.10/rstiefel/man/rbing.vector.gibbs.Rd |   24 +++++---
 rstiefel-0.10/rstiefel/man/rmf.vector.Rd         |    2 
 rstiefel-0.10/rstiefel/man/rstiefel-package.Rd   |    4 -
 rstiefel-0.10/rstiefel/vignettes/rstiefel.Rnw    |   62 ++++++++++++++++++++++-
 rstiefel-0.9/rstiefel/vignettes/rstiefel.bbl     |only
 11 files changed, 96 insertions(+), 35 deletions(-)

More information about rstiefel at CRAN
Permanent link

Package multilevelPSA updated to version 1.2.2 with previous version 1.2 dated 2013-05-10

Title: Multilevel Propensity Score Analysis
Description: Functions to estimate and visualize propensity score analysis for multilevel, or clustered, data.
Author: Jason Bryer
Maintainer: Jason Bryer

Diff between multilevelPSA versions 1.2 dated 2013-05-10 and 1.2.2 dated 2014-11-25

 DESCRIPTION                            |   23 +---
 MD5                                    |  120 ++++++++++++----------
 NAMESPACE                              |   14 ++
 NEWS                                   |   37 ++++++
 R/align.R                              |   35 +++++-
 R/covariate.balance.R                  |only
 R/covariateBalance.R                   |only
 R/cv.trans.psa.R                       |only
 R/mlpsa.R                              |  178 +++++++++++++++++++--------------
 R/mlpsa.ctree.R                        |    6 -
 R/mlpsa.logistic.R                     |   25 ++++
 R/mlpsa.print.R                        |    2 
 R/multilevelPSA-package.R              |    8 +
 R/plot.balance.R                       |only
 R/plot.loess.R                         |   37 +++++-
 R/plot.missing.R                       |    2 
 R/plot.mlpsa.R                         |   11 --
 R/plot.mlpsa.circ.R                    |    8 -
 R/plot.mlpsa.difference.R              |   57 +++++++++-
 R/plot.mlpsa.distribution.R            |   38 ++++---
 R/psrange.r                            |   49 ++++++---
 R/xtable.mlpsa.r                       |    2 
 data/pisa.colnames.rda                 |binary
 data/pisa.countries.rda                |binary
 data/pisana.rda                        |binary
 demo/00Index                           |    1 
 demo/pisa.R                            |   39 ++++---
 demo/pisa.loess.R                      |    3 
 demo/plotmissing.r                     |    8 -
 demo/psrange-trees.R                   |only
 man/align.plots.Rd                     |   14 +-
 man/as.data.frame.covariate.balance.Rd |only
 man/covariate.balance.Rd               |only
 man/covariateBalance.Rd                |only
 man/cv.trans.psa.Rd                    |only
 man/difftable.plot.Rd                  |   20 +--
 man/geom_rug_alt.Rd                    |   36 ++----
 man/getPropensityScores.Rd             |   17 +--
 man/getStrata.Rd                       |   19 +--
 man/is.mlpsa.Rd                        |    7 -
 man/loess.plot.Rd                      |   49 +++++----
 man/lsos.Rd                            |   14 +-
 man/missing.plot.Rd                    |   34 ++----
 man/mlpsa.Rd                           |   36 ++++--
 man/mlpsa.circ.plot.Rd                 |  103 +++++++------------
 man/mlpsa.ctree.Rd                     |   40 +++----
 man/mlpsa.difference.plot.Rd           |   70 ++++++------
 man/mlpsa.distribution.plot.Rd         |   37 ++----
 man/mlpsa.logistic.Rd                  |   27 ++---
 man/multilevelPSA-package.Rd           |   63 +++++------
 man/pisa.colnames.Rd                   |   11 --
 man/pisa.countries.Rd                  |    7 -
 man/pisa.psa.cols.Rd                   |    5 
 man/pisana.Rd                          |   27 ++---
 man/plot.covariate.balance.Rd          |only
 man/plot.mlpsa.Rd                      |   25 ++--
 man/plot.psrange.Rd                    |   53 ++++-----
 man/print.covariate.balance.Rd         |only
 man/print.mlpsa.Rd                     |    9 -
 man/print.psrange.Rd                   |    9 -
 man/print.xmlpsa.Rd                    |   18 +--
 man/psrange.Rd                         |   38 +++----
 man/summary.mlpsa.Rd                   |   13 +-
 man/summary.psrange.Rd                 |    9 -
 man/tree.plot.Rd                       |   56 ++++------
 man/xtable.mlpsa.Rd                    |   28 ++---
 man/zeroGrob.Rd                        |only
 67 files changed, 891 insertions(+), 706 deletions(-)

More information about multilevelPSA at CRAN
Permanent link

New package mads with initial version 0.1.0
Package: mads
Depends: mrds
Suggests: testthat
Type: Package
Title: Multi-Analysis Distance Sampling.
Version: 0.1.0
Date: 2014-11-27
Author: Laura Marshall
Maintainer: Laura Marshall
Description: Performs distance sampling analyses on a number of species accounting for unidentified sightings, model uncertainty and covariate uncertainty.
License: GPL (>= 2)
Packaged: 2014-11-25 02:50:52 UTC; laura
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 09:01:38

More information about mads at CRAN
Permanent link

Package GPArotation updated to version 2014.11-1 with previous version 2012.3-1 dated 2012-03-27

Title: GPA Factor Rotation
Description: Gradient Projection Algorithm Rotation for Factor Analysis. See ?GPArotation.Intro for more details.
Author: Coen Bernaards and Robert Jennrich
Maintainer: Paul Gilbert

Diff between GPArotation versions 2012.3-1 dated 2012-03-27 and 2014.11-1 dated 2014-11-25

 GPArotation-2012.3-1/GPArotation/Rbuildignore             |only
 GPArotation-2014.11-1/GPArotation/DESCRIPTION             |   14 ++++-----
 GPArotation-2014.11-1/GPArotation/MD5                     |   20 +++++++-------
 GPArotation-2014.11-1/GPArotation/NEWS                    |    4 ++
 GPArotation-2014.11-1/GPArotation/build                   |only
 GPArotation-2014.11-1/GPArotation/data/Harman.rda         |binary
 GPArotation-2014.11-1/GPArotation/data/Thurstone.rda      |binary
 GPArotation-2014.11-1/GPArotation/data/WansbeekMeijer.rda |binary
 GPArotation-2014.11-1/GPArotation/inst/doc/Guide.Stex     |    7 ----
 GPArotation-2014.11-1/GPArotation/inst/doc/Guide.pdf      |binary
 GPArotation-2014.11-1/GPArotation/man/rotations.Rd        |   15 +++++++---
 GPArotation-2014.11-1/GPArotation/vignettes/Guide.Stex    |    7 ----
 12 files changed, 32 insertions(+), 35 deletions(-)

More information about GPArotation at CRAN
Permanent link

New package iccbeta with initial version 1.0
Package: iccbeta
Type: Package
Title: Multilevel model intraclass correlation for slope heterogeneity
Version: 1.0
Date: 2014-11-21
Authors@R: c(person("Steven Andrew", "Culpepper", role = c("aut", "cph","cre"), email = "sculpepp@illinois.edu"),person("Herman", "Aguinis", role = c("aut", "cph"), email = "haguinis@indiana.edu"))
Maintainer: Steven Andrew Culpepper
Description: A function and vignettes for computing an intraclass correlation described in Aguinis & Culpepper (in press). iccbeta quantifies the share of variance in a dependent variable that is attributed to group heterogeneity in slopes.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.1)
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo
Depends: R (>= 3.0.2), lme4
Packaged: 2014-11-25 02:21:38 UTC; sculpepp
Author: Steven Andrew Culpepper [aut, cph, cre], Herman Aguinis [aut, cph]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-25 08:52:58

More information about iccbeta at CRAN
Permanent link

Package emdbook updated to version 1.3.6 with previous version 1.3.4 dated 2013-03-07

Title: Ecological models and data (book support)
Description: Auxiliary functions and data sets for _Ecological Models and Data_, a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0)
Author: Ben Bolker
Maintainer: Ben Bolker

Diff between emdbook versions 1.3.4 dated 2013-03-07 and 1.3.6 dated 2014-11-25

 emdbook-1.3.4/emdbook/DATASETS            |only
 emdbook-1.3.4/emdbook/TODO                |only
 emdbook-1.3.6/emdbook/DESCRIPTION         |   17 +++++++----------
 emdbook-1.3.6/emdbook/MD5                 |   21 ++++++++++-----------
 emdbook-1.3.6/emdbook/NAMESPACE           |    7 ++++++-
 emdbook-1.3.6/emdbook/NEWS                |only
 emdbook-1.3.6/emdbook/R/bayes.R           |    1 -
 emdbook-1.3.6/emdbook/R/emdbook.R         |    7 +------
 emdbook-1.3.6/emdbook/R/utils3d.R         |   17 +++++++----------
 emdbook-1.3.6/emdbook/inst/NEWS.Rd        |    6 ++++++
 emdbook-1.3.6/emdbook/man/apply2d.Rd      |    2 +-
 emdbook-1.3.6/emdbook/man/curve3d.Rd      |    2 +-
 emdbook-1.3.6/emdbook/man/gridsearch2d.Rd |    4 +++-
 13 files changed, 42 insertions(+), 42 deletions(-)

More information about emdbook at CRAN
Permanent link

New package GCPM with initial version 1.1
Package: GCPM
Type: Package
Title: Generalized Credit Portfolio Model
Version: 1.1
Date: 2014-11-24
Author: Kevin Jakob
Maintainer: Kevin Jakob
Description: The package helps to analyze the default risk of credit portfolios. Commonly known models, like CreditRisk+ or the CreditMetrics model are implemented in their very basic settings. The portfolio loss distribution can be achieved either by simulation or analytically in case of the classic CreditRisk+ model. Models are only implemented to respect losses caused by defaults, i.e. migration risk is not included. The package structure is kept flexible especially with respect to distributional assumptions in order to quantify the sensitivity of risk figures with respect to several assumptions. Therefore the package can be used to determine the credit risk of a given portfolio as well as to quantify model sensitivities.
License: GPL-2
Imports: Rcpp (>= 0.11.2), methods, RcppProgress(>= 0.1)
LinkingTo: Rcpp, RcppProgress
Packaged: 2014-11-24 18:46:01 UTC; Kevin_Jakob
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-25 08:40:13

More information about GCPM at CRAN
Permanent link

Package dse updated to version 2014.11-1 with previous version 2013.3-2 dated 2013-03-07

Title: Dynamic Systems Estimation (time series package)
Description: Package dse provides tools for multivariate, linear, time-invariant, time series models. It includes ARMA and state-space representations, and methods for converting between them. It also includes simulation methods and several estimation functions. The package has functions for looking at model roots, stability, and forecasts at different horizons. The ARMA model representation is general, so that VAR, VARX, ARIMA, ARMAX, ARIMAX can all be considered to be special cases. Kalman filter and smoother estimates can be obtained from the state space model, and state-space model reduction techniques are implemented. An introduction and User's Guide is available in a vignette.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between dse versions 2013.3-2 dated 2013-03-07 and 2014.11-1 dated 2014-11-25

 dse-2013.3-2/dse/src-c                        |only
 dse-2014.11-1/dse/DESCRIPTION                 |   40 +++++++++++-------------
 dse-2014.11-1/dse/MD5                         |   42 +++++++++++++-------------
 dse-2014.11-1/dse/NAMESPACE                   |   11 ++++++
 dse-2014.11-1/dse/NEWS                        |   21 +++++++++++++
 dse-2014.11-1/dse/R/dse1.R                    |   35 +++++++++------------
 dse-2014.11-1/dse/R/dse2.R                    |   18 +++++------
 dse-2014.11-1/dse/build                       |only
 dse-2014.11-1/dse/data/eg1.DSE.data.diff.rda  |binary
 dse-2014.11-1/dse/data/eg1.DSE.data.rda       |binary
 dse-2014.11-1/dse/data/egJofF.1dec93.data.rda |binary
 dse-2014.11-1/dse/inst/doc/Guide.Stex         |    3 -
 dse-2014.11-1/dse/inst/doc/Guide.pdf          |binary
 dse-2014.11-1/dse/man/DSEflags.Rd             |   11 ++----
 dse-2014.11-1/dse/man/DSEutilities.Rd         |    5 +++
 dse-2014.11-1/dse/man/forecastCov.Rd          |    6 ++-
 dse-2014.11-1/dse/man/simulate.Rd             |    2 -
 dse-2014.11-1/dse/tests/dse1tst01.R           |    2 -
 dse-2014.11-1/dse/tests/dse1tst08.R           |    6 +--
 dse-2014.11-1/dse/tests/dse1tst09.R           |    2 -
 dse-2014.11-1/dse/tests/dse2tst2.R            |    8 +++-
 dse-2014.11-1/dse/tests/dse2tstgd1.R          |    6 +++
 dse-2014.11-1/dse/vignettes/Guide.Stex        |    3 -
 23 files changed, 127 insertions(+), 94 deletions(-)

More information about dse at CRAN
Permanent link

Package BayesLCA updated to version 1.6 with previous version 1.5 dated 2014-04-29

Title: Bayesian Latent Class Analysis
Description: Bayesian Latent Class Analysis using several different methods.
Author: Arthur White and Brendan Murphy
Maintainer: Arthur White

Diff between BayesLCA versions 1.5 dated 2014-04-29 and 1.6 dated 2014-11-25

 DESCRIPTION             |   11 ++++++-----
 MD5                     |    9 +++++----
 inst                    |only
 man/BayesLCA-package.Rd |    5 +++++
 man/blca.Rd             |    5 +++++
 man/plot.blca.Rd        |    5 +++++
 6 files changed, 26 insertions(+), 9 deletions(-)

More information about BayesLCA at CRAN
Permanent link

Package acss updated to version 0.2-5 with previous version 0.2-4 dated 2014-06-01

Title: Algorithmic Complexity for Short Strings
Description: Main functionality is to provide the algorithmic complexity for short strings, an approximation of the Kolmogorov Complexity of a short string using the coding theorem method (see ?acss). The database containing the complexity is provided in the data only package acss.data, this package provides functions accessing the data such as prob_random returning the posterior probability that a given string was produced by a random process. In addition, two traditional (but problematic) measures of complexity are also provided: entropy and change complexity.
Author: Nicolas Gauvrit [aut], Henrik Singmann [aut, cre], Fernando Soler Toscano [ctb], Hector Zenil [ctb]
Maintainer: Henrik Singmann

Diff between acss versions 0.2-4 dated 2014-06-01 and 0.2-5 dated 2014-11-25

 acss-0.2-4/acss/tests/testthat/test-PsychMethods.R   |only
 acss-0.2-5/acss/DESCRIPTION                          |   14 -
 acss-0.2-5/acss/MD5                                  |   30 +--
 acss-0.2-5/acss/NAMESPACE                            |    2 
 acss-0.2-5/acss/NEWS                                 |only
 acss-0.2-5/acss/R/acss.R                             |   21 +-
 acss-0.2-5/acss/R/exp1-data.R                        |   28 +--
 acss-0.2-5/acss/R/exp2-data.R                        |   32 +--
 acss-0.2-5/acss/R/matthews2013-data.R                |   30 +--
 acss-0.2-5/acss/inst                                 |only
 acss-0.2-5/acss/man/acss.Rd                          |   94 +++--------
 acss-0.2-5/acss/man/entropy.Rd                       |   35 ----
 acss-0.2-5/acss/man/exp1.Rd                          |   11 -
 acss-0.2-5/acss/man/exp2.Rd                          |   12 -
 acss-0.2-5/acss/man/matthews2013.Rd                  |   10 -
 acss-0.2-5/acss/man/normalize_string.Rd              |   36 +---
 acss-0.2-5/acss/tests/testthat/test-acss.R           |  158 +++++++++----------
 acss-0.2-5/acss/tests/testthat/test-manuscript2014.R |only
 18 files changed, 223 insertions(+), 290 deletions(-)

More information about acss at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.