Title: Generating Robust Biclusters from a Bicluster Set (Ensemble
Biclustering)
Diff between superbiclust versions 0.1 dated 2013-04-23 and 1.1 dated 2014-11-27
Description: Biclusters are submatrices in the data matrix which
satisfy certain conditions of homogeneity. Package contains
functions for generating robust biclusters with respect to the
initialization parameters for a given bicluster solution
contained in a bicluster set in data, the procedure is also
known as ensemble biclustering. The set of biclusters is
evaluated based on the similarity of its elements (the
overlap), and afterwards the hierarchical tree is constructed
to obtain cut-off points for the classes of robust biclusters.
The result is a number of robust (or super) biclusters with
none or low overlap.
Author: Tatsiana Khamiakova
Maintainer: Tatsiana Khamiakova
superbiclust-0.1/superbiclust/man/superbiclust-package.Rd |only
superbiclust-1.1/superbiclust/DESCRIPTION | 9 ++++++---
superbiclust-1.1/superbiclust/MD5 | 6 +++---
superbiclust-1.1/superbiclust/R/biclustData-class.R | 8 ++++----
superbiclust-1.1/superbiclust/man/biclustSim-package.Rd |only
5 files changed, 13 insertions(+), 10 deletions(-)
Title: Functions for Ecdat
Diff between Ecfun versions 0.1-2 dated 2014-10-28 and 0.1-3 dated 2014-11-27
Description: Functions to update datasets in Ecdat and to create,
manipulate, plot and analyze those and similar datasets.
Author: Spencer Graves
Maintainer: Spencer Graves
DESCRIPTION | 10 ++--
MD5 | 19 +++++---
R/matchName.R |only
R/matchName1.R |only
R/parseName.R | 78 ++++++++++++++++++++++++---------
R/pmatch2.R |only
R/subNonStandardCharacters.R | 92 ++++++++++++++++++++--------------------
R/subNonStandardNames.R | 31 +++++++++++--
man/matchName.Rd |only
man/parseName.Rd | 66 ++++++++++++++++++++++------
man/pmatch2.Rd |only
man/subNonStandardCharacters.Rd | 24 +++++++---
man/subNonStandardNames.Rd | 76 +++++++++++++++++++++++++--------
13 files changed, 275 insertions(+), 121 deletions(-)
Title: Generalized PATHMOX Algorithm for PLS-PM, LS and LAD Regression
Diff between genpathmox versions 0.1 dated 2014-10-30 and 0.2 dated 2014-11-27
Description: genpathmox provides a very interesting solution for handling
segmentation variables in complex statistical methodology. It contains en
extended version of the PATHMOX algorithm in the context of partial least
square path modeling (Sanchez, 2009) including the F-block test (to detect
the responsible latent endogenous equations of the difference), the
F-coefficient (to detect the path coefficients responsible of the
difference) and the invariance test (to realize a comparison between the
sub-models' latent variables). Furthermore, the package contains a
generalized version of the PATHMOX algorithm to approach different
methodologies: linear regression and least absolute regression models.
Author: "Giuseppe Lamberti" [aut, cre]
Maintainer: "Giuseppe Lamberti"
DESCRIPTION | 6 -
MD5 | 72 ++++++-------
R/25_fun_mox.tree.pls.R | 2
R/27_fun_pls.pathmox.R | 21 +--
R/28_fun_invariance.R | 12 +-
R/29_fun_pls.treemodel.R | 232 +++++++++++++++++++++---------------------
R/30_fun_invariance_test.R | 11 -
R/34_fun_F.data.reg.R | 10 +
R/36_fun_Fc.test.reg.R | 6 -
R/37_fun_test.particion.reg.R | 2
R/41_fun_mox.tree.R | 2
R/43_fun_reg.pathmox.R | 7 -
R/44_fun_reg.treemodel.R | 29 +++--
R/fibtele-data.R | 32 +++--
R/plot_plot.treemodel.R | 18 +--
R/plot_plot.treemodelreg.R | 8 -
R/plot_plot.xtree.pls.R | 18 +--
R/plot_plot.xtree.reg.R | 6 -
R/print_print.xtree.pls.R | 18 +--
R/print_print.xtree.reg.R | 6 -
R/summary_summary.xtree.pls.R | 22 +--
R/summary_summary.xtree.reg.R | 6 -
man/fibtele.Rd | 12 +-
man/fibtelereg.Rd | 20 ++-
man/invariance_test.Rd | 12 --
man/plot.treemodel.Rd | 18 +--
man/plot.treemodelreg.Rd | 8 -
man/plot.xtree.pls.Rd | 18 +--
man/plot.xtree.reg.Rd | 6 -
man/pls.pathmox.Rd | 25 +---
man/pls.treemodel.Rd | 26 ++--
man/print.xtree.pls.Rd | 18 +--
man/print.xtree.reg.Rd | 6 -
man/reg.pathmox.Rd | 9 -
man/reg.treemodel.Rd | 19 +--
man/summary.xtree.pls.Rd | 18 +--
man/summary.xtree.reg.Rd | 6 -
37 files changed, 403 insertions(+), 364 deletions(-)
Title: Empirical Research in Economics with R
Diff between erer versions 2.2 dated 2014-08-11 and 2.3 dated 2014-11-27
Description: Functions, datasets, and sample codes related to the book of 'Empirical Research in Economics: Growing up with R' by Dr. Changyou Sun are included. The book is still under preparation as of 2014. Marginal effects for binary or ordered choice models can be calculated. Static and dynamic Almost Ideal Demand System (AIDS) models can be estimated. A typical event analysis in finance can be conducted with several functions included.
Author: Changyou Sun
Maintainer: Changyou Sun
erer-2.2/erer/inst/doc/ererBookData |only
erer-2.2/erer/inst/doc/ererBookRcode |only
erer-2.3/erer/DESCRIPTION | 14 -
erer-2.3/erer/MD5 | 242 +++++++++---------
erer-2.3/erer/R/maBina.r | 2
erer-2.3/erer/R/ocME.r | 20 -
erer-2.3/erer/R/ocProb.r | 18 -
erer-2.3/erer/inst/doc/RawDataAids.xlsx |only
erer-2.3/erer/inst/doc/RawDataIns.xls |only
erer-2.3/erer/inst/doc/RawDataIns1.csv |only
erer-2.3/erer/inst/doc/RawDataIns2.csv |only
erer-2.3/erer/inst/doc/RawDataProjectARoll.xlsx |only
erer-2.3/erer/inst/doc/RawDataProjectBBurn.xlsx |only
erer-2.3/erer/inst/doc/RawDataProjectCEsa.xlsx |only
erer-2.3/erer/inst/doc/RawDataTest.csv |only
erer-2.3/erer/inst/doc/RawDataTest.xlsx |only
erer-2.3/erer/inst/doc/r071sunSJAFdraft.r |only
erer-2.3/erer/inst/doc/r072sunSJAF.r |only
erer-2.3/erer/inst/doc/r073curlybrace.r |only
erer-2.3/erer/inst/doc/r074sunPoor.r |only
erer-2.3/erer/inst/doc/r075formatR.r |only
erer-2.3/erer/inst/doc/r081attribute.r |only
erer-2.3/erer/inst/doc/r082missing.r |only
erer-2.3/erer/inst/doc/r083IndexFunctionFlow.r |only
erer-2.3/erer/inst/doc/r084clip.r |only
erer-2.3/erer/inst/doc/r085sample.r |only
erer-2.3/erer/inst/doc/r086excel.r |only
erer-2.3/erer/inst/doc/r087export.r |only
erer-2.3/erer/inst/doc/r091operator.r |only
erer-2.3/erer/inst/doc/r092string.r |only
erer-2.3/erer/inst/doc/r093regex.r |only
erer-2.3/erer/inst/doc/r094string_app.r |only
erer-2.3/erer/inst/doc/r095factor.r |only
erer-2.3/erer/inst/doc/r096date.r |only
erer-2.3/erer/inst/doc/r097timeseries.r |only
erer-2.3/erer/inst/doc/r098formula.r |only
erer-2.3/erer/inst/doc/r101index.r |only
erer-2.3/erer/inst/doc/r102dataframe.r |only
erer-2.3/erer/inst/doc/r103dataframeSummary.r |only
erer-2.3/erer/inst/doc/r104dataframeApply.r |only
erer-2.3/erer/inst/doc/r105callingFunction.r |only
erer-2.3/erer/inst/doc/r111bird.r |only
erer-2.3/erer/inst/doc/r112device.r |only
erer-2.3/erer/inst/doc/r113par.r |only
erer-2.3/erer/inst/doc/r114multiplepages.r |only
erer-2.3/erer/inst/doc/r115multiplegraphs.r |only
erer-2.3/erer/inst/doc/r116highlow.r |only
erer-2.3/erer/inst/doc/r117region.r |only
erer-2.3/erer/inst/doc/r118hunting.r |only
erer-2.3/erer/inst/doc/r119Amemo.r |only
erer-2.3/erer/inst/doc/r119Bdemand.r |only
erer-2.3/erer/inst/doc/r121wanJAAE.r |only
erer-2.3/erer/inst/doc/r122aidsNoFunction.r |only
erer-2.3/erer/inst/doc/r131conditional.r |only
erer-2.3/erer/inst/doc/r132loop.r |only
erer-2.3/erer/inst/doc/r133looptip.r |only
erer-2.3/erer/inst/doc/r134stop.r |only
erer-2.3/erer/inst/doc/r135homo.r |only
erer-2.3/erer/inst/doc/r136elasticity.r |only
erer-2.3/erer/inst/doc/r141matrix.r |only
erer-2.3/erer/inst/doc/r142inversion.r |only
erer-2.3/erer/inst/doc/r143ols.r |only
erer-2.3/erer/inst/doc/r144systemfitRev.r |only
erer-2.3/erer/inst/doc/r145meBinary.r |only
erer-2.3/erer/inst/doc/r151function.r |only
erer-2.3/erer/inst/doc/r152argument.r |only
erer-2.3/erer/inst/doc/r153return.r |only
erer-2.3/erer/inst/doc/r154environment.r |only
erer-2.3/erer/inst/doc/r155s34need.r |only
erer-2.3/erer/inst/doc/r156s3.r |only
erer-2.3/erer/inst/doc/r157s4.r |only
erer-2.3/erer/inst/doc/r158s4test.r |only
erer-2.3/erer/inst/doc/r159Apseudo.r |only
erer-2.3/erer/inst/doc/r159Boptimize.r |only
erer-2.3/erer/inst/doc/r159Coptim.r |only
erer-2.3/erer/inst/doc/r159DaiStaFit.r |only
erer-2.3/erer/inst/doc/r161gridBasic.r |only
erer-2.3/erer/inst/doc/r162gridHunt.r |only
erer-2.3/erer/inst/doc/r163gridMemo.r |only
erer-2.3/erer/inst/doc/r164ggplotHunt.r |only
erer-2.3/erer/inst/doc/r165ggplotAids.r |only
erer-2.3/erer/inst/doc/r166map.r |only
erer-2.3/erer/inst/doc/r166mapGgplot.r |only
erer-2.3/erer/inst/doc/r171sunBedsMain.r |only
erer-2.3/erer/inst/doc/r172sunBedsGraph.r |only
erer-2.3/erer/inst/doc/r181debug.r |only
erer-2.3/erer/inst/doc/r182time.r |only
erer-2.3/erer/inst/doc/r191skeleton.r |only
erer-2.3/erer/inst/doc/r192ciTarFit.r |only
erer-2.3/erer/inst/doc/r193namespace.r |only
erer-2.3/erer/inst/doc/r201chess.r |only
erer-2.3/erer/inst/doc/r202tax.r |only
erer-2.3/erer/inst/doc/r203guiCor.r |only
erer-2.3/erer/inst/doc/r204guiApt.r |only
erer-2.3/erer/inst/doc/rAppendixShowbox1worldmap.r |only
erer-2.3/erer/inst/doc/rAppendixShowbox2heart.r |only
erer-2.3/erer/inst/doc/rAppendixShowbox3mosaic.r |only
erer-2.3/erer/inst/doc/rAppendixShowbox4diagram.r |only
erer-2.3/erer/inst/doc/rAppendixShowbox5correlation.r |only
erer-2.3/erer/inst/doc/rAppendixShowbox6face.r |only
erer-2.3/erer/inst/doc/rAppendixocME.r |only
erer-2.3/erer/inst/doc/rAppendixocProb.r |only
erer-2.3/erer/man/aiData.Rd | 18 -
erer-2.3/erer/man/aiDiag.Rd | 2
erer-2.3/erer/man/aiDynFit.Rd | 2
erer-2.3/erer/man/aiElas.Rd | 2
erer-2.3/erer/man/aiStaFit.Rd | 2
erer-2.3/erer/man/aiStaHau.Rd | 2
erer-2.3/erer/man/bsFormu.Rd | 2
erer-2.3/erer/man/bsLag.Rd | 2
erer-2.3/erer/man/bsStat.Rd | 2
erer-2.3/erer/man/bsTab.Rd | 2
erer-2.3/erer/man/daIns.Rd | 3
erer-2.3/erer/man/download.lib.Rd | 2
erer-2.3/erer/man/erer-package.Rd | 8
erer-2.3/erer/man/evReturn.Rd | 2
erer-2.3/erer/man/evRisk.Rd | 2
erer-2.3/erer/man/head.ts.Rd | 2
erer-2.3/erer/man/listn.Rd | 2
erer-2.3/erer/man/lss.Rd | 2
erer-2.3/erer/man/maBina.Rd | 2
erer-2.3/erer/man/maTrend.Rd | 2
erer-2.3/erer/man/ocME.Rd | 2
erer-2.3/erer/man/ocProb.Rd | 2
erer-2.3/erer/man/summary.aiFit.Rd | 2
erer-2.3/erer/man/systemfitAR.Rd | 2
erer-2.3/erer/man/ur.df2.Rd | 2
127 files changed, 185 insertions(+), 184 deletions(-)
Title: Asymmetric Price Transmission (apt)
Diff between apt versions 2.2 dated 2014-08-11 and 2.3 dated 2014-11-27
Description: This package focuses on asymmetric price transmission (APT) between two time series. It contains functions for linear and nonlinear threshold cointegration, and furthermore, symmetric and asymmetric error correction model. A graphical user interface is also included for major functions included in the package, so users can also use these functions in a more intuitive way.
Author: Changyou Sun
Maintainer: Changyou Sun
apt-2.2/apt/inst/doc/apt-manual.pdf |only
apt-2.3/apt/DESCRIPTION | 12 +-
apt-2.3/apt/MD5 | 48 +++++-----
apt-2.3/apt/R/ciTarLag.R | 2
apt-2.3/apt/R/ciTarThd.R | 4
apt-2.3/apt/R/ecmAsyTest.R | 5 -
apt-2.3/apt/build/vignette.rds |binary
apt-2.3/apt/inst/doc/ERERchapter17SampleStudyAPT.pdf |only
apt-2.3/apt/inst/doc/apt.R | 14 ---
apt-2.3/apt/inst/doc/apt.Rnw | 87 +------------------
apt-2.3/apt/inst/doc/apt.pdf |binary
apt-2.3/apt/man/apt-package.Rd | 6 -
apt-2.3/apt/man/ciTarFit.Rd | 2
apt-2.3/apt/man/ciTarLag.Rd | 6 -
apt-2.3/apt/man/ciTarThd.Rd | 8 +
apt-2.3/apt/man/daVich.Rd | 2
apt-2.3/apt/man/ecmAsyFit.Rd | 2
apt-2.3/apt/man/ecmAsyTest.Rd | 12 ++
apt-2.3/apt/man/ecmDiag.Rd | 4
apt-2.3/apt/man/ecmSymFit.Rd | 2
apt-2.3/apt/man/guiApt.Rd | 2
apt-2.3/apt/man/guiCor.Rd | 2
apt-2.3/apt/man/print.ecm.Rd | 2
apt-2.3/apt/man/summary.ciTarFit.Rd | 3
apt-2.3/apt/man/summary.ecm.Rd | 2
apt-2.3/apt/vignettes/apt.Rnw | 87 +------------------
26 files changed, 94 insertions(+), 220 deletions(-)
Title: Visualization of regression models
Diff between visreg versions 2.0-6 dated 2014-08-26 and 2.1-0 dated 2014-11-27
Description: Provides convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R (lm, glm, coxph, rlm, gam, locfit, etc.)
Author: Patrick Breheny, Woodrow Burchett
Maintainer: Patrick Breheny
visreg-2.0-6/visreg/R/removeFormulaFormatting.R |only
visreg-2.1-0/visreg/DESCRIPTION | 8
visreg-2.1-0/visreg/MD5 | 65 ++++----
visreg-2.1-0/visreg/NAMESPACE | 5
visreg-2.1-0/visreg/NEWS | 93 +++++++----
visreg-2.1-0/visreg/R/Response.R | 5
visreg-2.1-0/visreg/R/Terms.R | 2
visreg-2.1-0/visreg/R/factorPlot.R | 32 ++-
visreg-2.1-0/visreg/R/getXY.R | 1
visreg-2.1-0/visreg/R/parseFormula.R |only
visreg-2.1-0/visreg/R/plot.visreg.R |only
visreg-2.1-0/visreg/R/plot.visreg.list.R |only
visreg-2.1-0/visreg/R/printCond.R | 7
visreg-2.1-0/visreg/R/setupD.R | 2
visreg-2.1-0/visreg/R/setupF.R | 55 +++---
visreg-2.1-0/visreg/R/setupV.R | 93 ++++++++++-
visreg-2.1-0/visreg/R/setupV2.R | 2
visreg-2.1-0/visreg/R/setupX.R | 20 +-
visreg-2.1-0/visreg/R/subsetV.R | 9 -
visreg-2.1-0/visreg/R/visreg.R | 26 ---
visreg-2.1-0/visreg/R/visreg2d.R | 1
visreg-2.1-0/visreg/R/visregLatticePlot.R | 142 ++++++++---------
visreg-2.1-0/visreg/R/visregOverlayPlot.R | 157 +++++++++----------
visreg-2.1-0/visreg/R/visregPanel.R | 6
visreg-2.1-0/visreg/R/visregPlot.R | 97 +++++-------
visreg-2.1-0/visreg/inst/faq |only
visreg-2.1-0/visreg/inst/tests/formulas.R |only
visreg-2.1-0/visreg/inst/tests/mixed-models.R | 2
visreg-2.1-0/visreg/inst/tests/subset.R |only
visreg-2.1-0/visreg/man/plot.visreg.Rd |only
visreg-2.1-0/visreg/man/visreg-faq.Rd | 44 ++++-
visreg-2.1-0/visreg/man/visreg-package.Rd | 2
visreg-2.1-0/visreg/man/visreg.Rd | 194 ++++++++----------------
visreg-2.1-0/visreg/tests/visreg-glm.R | 4
visreg-2.1-0/visreg/tests/visreg-interactions.R | 2
visreg-2.1-0/visreg/tests/visreg-lm.R | 9 -
visreg-2.1-0/visreg/tests/visreg-mlm.R | 3
37 files changed, 571 insertions(+), 517 deletions(-)
Title: DEComposition of Indirect and Direct Effects
Diff between DECIDE versions 1.1 dated 2011-12-16 and 1.2 dated 2014-11-27
Description: Calculates various estimates for measures of educational
differentials, the relative importance of primary and secondary
effects in the creation of such differentials and compares the
estimates obtained from two datasets.
Author: Christiana Kartsonaki
Maintainer: Christiana Kartsonaki
DESCRIPTION | 9 +++++----
MD5 | 20 ++++++++++----------
R/compare.relimp.R | 29 ++---------------------------
R/relative.importance.R | 2 +-
man/DECIDE-package.Rd | 12 ++++++------
man/compare.relimp.Rd | 41 +++++++++++++++++++++++------------------
man/create.classdata.Rd | 10 ++++++++++
man/plot_transition.Rd | 21 ++++++++++++++++-----
man/prepare.data.Rd | 13 +++++++++++--
man/print_relimp.Rd | 24 +++++++++++++++++-------
man/relative.importance.Rd | 21 ++++++++++++++++-----
11 files changed, 117 insertions(+), 85 deletions(-)
Title: Taxonomic Standardization of Plant Species Names
Diff between Taxonstand versions 1.5 dated 2014-10-29 and 1.6 dated 2014-11-27
Description: Automated standardization of taxonomic names and removal of orthographic errors in plant species names using the The Plant List (TPL) website (www.theplantlist.org)
Author: Luis Cayuela and Jari Oksanen
Maintainer: Luis Cayuela
DESCRIPTION | 10 +++----
MD5 | 10 +++----
R/TPL.R | 21 ++++++++++++----
R/TPLck.R | 77 +++++++++++++++++++++++++++++++++++++++++++++++------------
man/TPL.Rd | 7 ++++-
man/TPLck.Rd | 8 ++++--
6 files changed, 100 insertions(+), 33 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation
Diff between mgcv versions 1.8-3 dated 2014-08-29 and 1.8-4 dated 2014-11-27
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML
or UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood
ChangeLog | 63 +++
DESCRIPTION | 6
MD5 | 48 +-
NAMESPACE | 19 -
R/bam.r | 85 ++--
R/coxph.r | 1
R/fast-REML.r | 52 +-
R/gam.fit3.r | 6
R/jagam.r |only
R/mgcv.r | 62 ++-
R/misc.r | 57 ++-
R/plots.r | 1
R/smooth.r | 249 ++++++++------
man/bam.Rd | 16
man/gam.Rd | 8
man/gamm.Rd | 8
man/jagam.Rd |only
man/mgcv-package.Rd | 2
man/mgcv-parallel.Rd | 6
man/slanczos.Rd | 4
man/smoothCon.Rd | 8
man/step.gam.Rd | 2
src/init.c | 9
src/mat.c | 898 +++++++++++++++++++++++++++++++++++++++++++++++++--
src/mgcv.h | 7
src/tprs.c | 2
26 files changed, 1345 insertions(+), 274 deletions(-)
Title: Ridge Estimation of Precision Matrices from High-Dimensional
Data
Diff between rags2ridges versions 1.3 dated 2014-08-06 and 1.4 dated 2014-11-27
Description: Package contains proper L2-penalized ML estimators for the precision matrix as well as supporting functions to employ these estimators in a graphical modeling setting.
Author: Carel F.W. Peeters, Wessel N. van Wieringen
Maintainer: Carel F.W. Peeters
DESCRIPTION | 16
MD5 | 27
NAMESPACE | 14
R/rags2ridges.R | 1363 ++++++++++++++++++++++++++++++++++++++++----
inst/CITATION | 2
man/GGMblockNullPenalty.Rd |only
man/GGMblockTest.Rd |only
man/GGMnetworkStats.Rd | 23
man/GGMpathStats.Rd |only
man/default.target.Rd | 9
man/evaluateSfit.Rd | 3
man/fullMontyS.Rd |only
man/optPenalty.LOOCVauto.Rd |only
man/optPenalty.aLOOCV.Rd | 5
man/pcor.Rd | 2
man/rags2ridges-package.Rd | 15
man/sparsify.Rd | 38 -
17 files changed, 1347 insertions(+), 170 deletions(-)
Title: FCROS to search for differentially expressed genes and to detect
recurrent chromosomal copy number aberrations.
Diff between fcros versions 1.2 dated 2014-09-09 and 1.3 dated 2014-11-27
Description: A fold change rank ordering statistics method is presented to search for
differentially expressed genes and to detect recurrent chromosomal copy number aberrations.
This method may be useful for high-throughput biological data (microarray, sequencing, ...).
Probabilities are associated with genes in the dataset and there is no problem of multiple
tests when using this method.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele
DESCRIPTION | 19 ++++----
MD5 | 40 ++++++++---------
R/fcros.R | 11 ++--
R/fcros2.R | 16 ++++---
R/fcrosFCmat.R | 4 -
R/fcrosHistoPlot.R | 4 -
R/fcrosMod.R | 29 +++++++++---
R/fcrosTtest.R | 11 ++--
R/fcrosWrite.R | 29 +++++++-----
man/fcros-package.Rd | 91 ++++++++++++++++++----------------------
man/fcros.Rd | 98 ++++++++++++++++++++++---------------------
man/fcros2.Rd | 108 ++++++++++++++++++++++++-----------------------
man/fcrosFCmat.Rd | 59 ++++++++++++++-----------
man/fcrosHistoPlot.Rd | 13 +++--
man/fcrosMod.Rd | 109 ++++++++++++++++++++++++++----------------------
man/fcrosRead.Rd | 16 +++----
man/fcrosTopN.Rd | 19 ++++----
man/fcrosTtest.Rd | 42 +++++++++---------
man/fcrosVolcanoPlot.Rd | 16 +++----
man/fcrosWrite.Rd | 28 +++++++-----
man/fdata.Rd | 13 +++--
21 files changed, 415 insertions(+), 360 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
Diff between deldir versions 0.1-6 dated 2014-08-02 and 0.1-7 dated 2014-11-27
Description: Calculates the Delaunay triangulation and the Dirichlet
or Voronoi tessellation (with respect to the entire plane) of
a planar point set. Plots triangulations and tessellations in
various ways. Clips tessellations to sub-windows. Calculates
perimeters of tessellations.
Author: Rolf Turner
Maintainer: Rolf Turner
ChangeLog | 20 ++++++++++++++++++++
DESCRIPTION | 8 ++++----
MD5 | 9 +++++----
R/declareGlobals.R |only
R/deldir.R | 50 ++++++++++++++++++++++++++++++++------------------
man/deldir.Rd | 7 ++++++-
6 files changed, 67 insertions(+), 27 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-13 0.0.1
Title: R MPFR - Multiple Precision Floating-Point Reliable
Diff between Rmpfr versions 0.5-6 dated 2014-09-05 and 0.5-7 dated 2014-11-27
Description: Rmpfr provides (S4 classes and methods for)
arithmetic including transcendental ("special") functions for
arbitrary precision floating point numbers. To this end, it interfaces to
the LGPL'ed MPFR (Multiple Precision Floating-Point Reliable) Library
which itself is based on the GMP (GNU Multiple Precision) Library.
Author: Martin Maechler
Maintainer: Martin Maechler
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
R/as.R | 3 ++-
build/vignette.rds |binary
inst/doc/Maechler_useR_2011-abstr.pdf |binary
inst/doc/Rmpfr-pkg.pdf |binary
inst/doc/log1mexp-note.pdf |binary
src/convert.c | 2 +-
tests/arith-ex.R | 4 ++++
9 files changed, 19 insertions(+), 14 deletions(-)
Title: Co-Information based N-Order Epistasis Detector and Visualizer
Diff between CINOEDV versions 1.1 dated 2014-10-17 and 2.0 dated 2014-11-27
Description: Detecting and visualizing nonlinear interaction effects of single nucleotide polymorphisms or epistatic interactions, especially high-order epistatic interactions, are important topics in bioinformatics because of their significant mathematical and computational challenges. We present CINOEDV (Co-Information based N-Order Epistasis Detector and Visualizer) for detecting, visualizing, and analyzing high-order epistatic interactions by introducing virtual vertices into the construction of a hypergraph. CINOEDV was developed as an alternative to existing software to build a global picture of epistatic interactions and unexpected high-order epistatic interactions, which might provide useful clues for understanding the underlying genetic architecture of complex diseases.
Author: Junliang Shang
Maintainer: Junliang Shang
DESCRIPTION | 10 +-
MD5 | 20 +++--
R/BatCINOEDV.R | 49 ++++++++++++-
R/CINOEDV_Main.R | 171 +++++++++++++++++++++--------------------------
R/PSOSearch.R |only
R/SubgraphSplit.R | 9 --
R/TestMaxOrder.R | 8 +-
R/TestPSOParameters.R |only
man/BatCINOEDV.Rd | 16 +++-
man/CINOEDV-package.Rd | 14 ++-
man/PSOSearch.Rd |only
man/TestMaxOrder.Rd | 2
man/TestPSOParameters.Rd |only
13 files changed, 171 insertions(+), 128 deletions(-)