Title: Plant Architectural Analysis with Yplant and QuasiMC
Diff between YplantQMC versions 0.5 dated 2013-03-03 and 0.6-3 dated 2014-12-01
Description: An R implementation of Yplant, combined with the QuasiMC
raytracer. Calculate radiation absorption, transmission and scattering,
photosynthesis and transpiration of virtual 3D plants.
Author: Remko Duursma. QuasiMC by Mik Cieslak. Uses code by Robert Pearcy
(Yplant) and Belinda Medlyn (MAESTRA)
Maintainer: Remko Duursma
YplantQMC-0.5/YplantQMC/R/STARbar.plant3dlist.R |only
YplantQMC-0.5/YplantQMC/R/UNLOAD.R |only
YplantQMC-0.5/YplantQMC/R/YplantDay.plant3d.R |only
YplantQMC-0.5/YplantQMC/R/YplantDay.plant3dlist.R |only
YplantQMC-0.5/YplantQMC/R/changeinternodes.R |only
YplantQMC-0.5/YplantQMC/R/makereport.R |only
YplantQMC-0.5/YplantQMC/R/modifypfile.R |only
YplantQMC-0.5/YplantQMC/R/plot.plant3dlist.R |only
YplantQMC-0.5/YplantQMC/R/plot.stand3d.R |only
YplantQMC-0.5/YplantQMC/R/readplantlist.R |only
YplantQMC-0.5/YplantQMC/R/runYplant.stand3d.R |only
YplantQMC-0.5/YplantQMC/R/ypaddonMessage.R |only
YplantQMC-0.5/YplantQMC/man/makereport.Rd |only
YplantQMC-0.6-3/YplantQMC/CHANGELOG | 7
YplantQMC-0.6-3/YplantQMC/DESCRIPTION | 24
YplantQMC-0.6-3/YplantQMC/MD5 | 288 ++---
YplantQMC-0.6-3/YplantQMC/NAMESPACE | 121 +-
YplantQMC-0.6-3/YplantQMC/R/DAPA.R | 6
YplantQMC-0.6-3/YplantQMC/R/DAPA.plant3d.R | 94 -
YplantQMC-0.6-3/YplantQMC/R/DAPAQMC.R | 50 -
YplantQMC-0.6-3/YplantQMC/R/Farquhar.R | 264 +++--
YplantQMC-0.6-3/YplantQMC/R/GramSchmidt.R |only
YplantQMC-0.6-3/YplantQMC/R/KE.R | 72 -
YplantQMC-0.6-3/YplantQMC/R/Kn.R | 97 -
YplantQMC-0.6-3/YplantQMC/R/STARbar.R | 521 ++++++----
YplantQMC-0.6-3/YplantQMC/R/Silhouette.R | 66 -
YplantQMC-0.6-3/YplantQMC/R/VPDTdiurnal.R | 78 -
YplantQMC-0.6-3/YplantQMC/R/VPDtoRH.R | 12
YplantQMC-0.6-3/YplantQMC/R/YplantDay.R | 302 +++++-
YplantQMC-0.6-3/YplantQMC/R/acosangle.R | 26
YplantQMC-0.6-3/YplantQMC/R/areapoly.R | 9
YplantQMC-0.6-3/YplantQMC/R/as.data.frame.STARbarlist.R | 18
YplantQMC-0.6-3/YplantQMC/R/calcparhrly.R | 104 +-
YplantQMC-0.6-3/YplantQMC/R/checkHemi.R | 17
YplantQMC-0.6-3/YplantQMC/R/checkInstallation.R | 28
YplantQMC-0.6-3/YplantQMC/R/constructplant.R | 799 +++++++++-------
YplantQMC-0.6-3/YplantQMC/R/crownhull.R | 99 +
YplantQMC-0.6-3/YplantQMC/R/esat.R | 20
YplantQMC-0.6-3/YplantQMC/R/evalHemi.R | 89 -
YplantQMC-0.6-3/YplantQMC/R/getR.R | 133 +-
YplantQMC-0.6-3/YplantQMC/R/getangles.R | 101 +-
YplantQMC-0.6-3/YplantQMC/R/getleafnormal.R | 18
YplantQMC-0.6-3/YplantQMC/R/getpsil.R | 440 ++++----
YplantQMC-0.6-3/YplantQMC/R/gridtrace.R | 286 ++---
YplantQMC-0.6-3/YplantQMC/R/includePhy.R | 107 +-
YplantQMC-0.6-3/YplantQMC/R/installQuasiMC.R | 116 +-
YplantQMC-0.6-3/YplantQMC/R/leafdata.R | 81 -
YplantQMC-0.6-3/YplantQMC/R/leafdispersion.R | 132 +-
YplantQMC-0.6-3/YplantQMC/R/lightresponse.R | 35
YplantQMC-0.6-3/YplantQMC/R/madeleafdirection.R | 80 -
YplantQMC-0.6-3/YplantQMC/R/makeQMCinput.R | 99 +
YplantQMC-0.6-3/YplantQMC/R/makeStand.R | 168 ++-
YplantQMC-0.6-3/YplantQMC/R/makesolarvec.R | 20
YplantQMC-0.6-3/YplantQMC/R/makevector.R | 2
YplantQMC-0.6-3/YplantQMC/R/makeviewplane.R | 22
YplantQMC-0.6-3/YplantQMC/R/pathlen.R | 263 ++---
YplantQMC-0.6-3/YplantQMC/R/photosyn.R | 284 ++---
YplantQMC-0.6-3/YplantQMC/R/plot.leaffile.R | 72 +
YplantQMC-0.6-3/YplantQMC/R/plot.plant3d.R | 428 +++++---
YplantQMC-0.6-3/YplantQMC/R/plot.projectedplant3d.R | 109 +-
YplantQMC-0.6-3/YplantQMC/R/plot.tracedplant.R | 56 -
YplantQMC-0.6-3/YplantQMC/R/plot.yphemi.R | 191 +--
YplantQMC-0.6-3/YplantQMC/R/plot.yplantsim.R | 196 +--
YplantQMC-0.6-3/YplantQMC/R/plot.yplocation.R | 20
YplantQMC-0.6-3/YplantQMC/R/plot.ypmet.R | 88 -
YplantQMC-0.6-3/YplantQMC/R/plot3dcylinder.R | 62 -
YplantQMC-0.6-3/YplantQMC/R/plotstemsections.R | 50 -
YplantQMC-0.6-3/YplantQMC/R/print.STAR.R | 28
YplantQMC-0.6-3/YplantQMC/R/print.plant3d.R | 36
YplantQMC-0.6-3/YplantQMC/R/print.plant3dlist.R | 16
YplantQMC-0.6-3/YplantQMC/R/print.projectedplant3d.R | 15
YplantQMC-0.6-3/YplantQMC/R/print.stand3d.R | 19
YplantQMC-0.6-3/YplantQMC/R/print.summary.plant3d.R | 68 -
YplantQMC-0.6-3/YplantQMC/R/print.yplantsim.R | 43
YplantQMC-0.6-3/YplantQMC/R/print.yplantsimlist.R | 20
YplantQMC-0.6-3/YplantQMC/R/print.yplocation.R | 27
YplantQMC-0.6-3/YplantQMC/R/print.ypmet.R | 48
YplantQMC-0.6-3/YplantQMC/R/print.ypphy.R | 23
YplantQMC-0.6-3/YplantQMC/R/projectplant.R | 173 ++-
YplantQMC-0.6-3/YplantQMC/R/psrdata.R | 24
YplantQMC-0.6-3/YplantQMC/R/randomplant.R | 258 +++--
YplantQMC-0.6-3/YplantQMC/R/readCAN.R | 74 -
YplantQMC-0.6-3/YplantQMC/R/readQMCout.R | 57 -
YplantQMC-0.6-3/YplantQMC/R/readl.R | 203 ++--
YplantQMC-0.6-3/YplantQMC/R/readp.R | 110 +-
YplantQMC-0.6-3/YplantQMC/R/replaceangles.R | 266 ++++-
YplantQMC-0.6-3/YplantQMC/R/runQMCUOC.R | 85 -
YplantQMC-0.6-3/YplantQMC/R/runYplant.R | 516 ++++++----
YplantQMC-0.6-3/YplantQMC/R/runquasimc.R | 59 -
YplantQMC-0.6-3/YplantQMC/R/setHemi.R | 171 ++-
YplantQMC-0.6-3/YplantQMC/R/setLocation.R | 115 +-
YplantQMC-0.6-3/YplantQMC/R/setMet.R | 451 +++++----
YplantQMC-0.6-3/YplantQMC/R/setPhy.R | 93 +
YplantQMC-0.6-3/YplantQMC/R/shiftplant.R | 138 +-
YplantQMC-0.6-3/YplantQMC/R/summary.plant3d.R | 369 ++++---
YplantQMC-0.6-3/YplantQMC/R/summary.plant3dlist.R | 155 +--
YplantQMC-0.6-3/YplantQMC/R/summary.yplantsimlist.R | 181 +--
YplantQMC-0.6-3/YplantQMC/R/viewplot.R | 143 +-
YplantQMC-0.6-3/YplantQMC/R/writeOUTfile.R | 26
YplantQMC-0.6-3/YplantQMC/R/writePSRfile.R | 119 +-
YplantQMC-0.6-3/YplantQMC/R/writecfg.R | 182 +--
YplantQMC-0.6-3/YplantQMC/R/writerandomdiffuse.R | 4
YplantQMC-0.6-3/YplantQMC/R/writeturtlediffuse.R | 47
YplantQMC-0.6-3/YplantQMC/R/xmastime.R | 69 -
YplantQMC-0.6-3/YplantQMC/R/xprod.R | 12
YplantQMC-0.6-3/YplantQMC/R/yplantqmc-package.R |only
YplantQMC-0.6-3/YplantQMC/R/ypreport.R |only
YplantQMC-0.6-3/YplantQMC/R/zenaz.R | 433 ++++----
YplantQMC-0.6-3/YplantQMC/R/zzz.R | 62 -
YplantQMC-0.6-3/YplantQMC/README.md |only
YplantQMC-0.6-3/YplantQMC/data/hemiphotos.RData |binary
YplantQMC-0.6-3/YplantQMC/data/plantexamples.RData |binary
YplantQMC-0.6-3/YplantQMC/data/turtle.RData |binary
YplantQMC-0.6-3/YplantQMC/data/turtle244.RData |binary
YplantQMC-0.6-3/YplantQMC/data/turtle482.RData |binary
YplantQMC-0.6-3/YplantQMC/data/yplantaltaz.RData |binary
YplantQMC-0.6-3/YplantQMC/man/Farquhar.Rd | 203 ++--
YplantQMC-0.6-3/YplantQMC/man/ModifyPfiles.Rd | 131 +-
YplantQMC-0.6-3/YplantQMC/man/STARbar.Rd | 158 +--
YplantQMC-0.6-3/YplantQMC/man/Silhouette.Rd | 43
YplantQMC-0.6-3/YplantQMC/man/YplantDay.Rd | 169 +--
YplantQMC-0.6-3/YplantQMC/man/constructplant.Rd | 150 +--
YplantQMC-0.6-3/YplantQMC/man/crownhull.Rd | 71 -
YplantQMC-0.6-3/YplantQMC/man/examplehemi.Rd | 24
YplantQMC-0.6-3/YplantQMC/man/getR.Rd | 28
YplantQMC-0.6-3/YplantQMC/man/getangles.Rd | 41
YplantQMC-0.6-3/YplantQMC/man/installQuasiMC.Rd | 42
YplantQMC-0.6-3/YplantQMC/man/leafdispersion.Rd | 81 -
YplantQMC-0.6-3/YplantQMC/man/lightresponse.Rd | 44
YplantQMC-0.6-3/YplantQMC/man/makeStand.Rd | 62 -
YplantQMC-0.6-3/YplantQMC/man/plantexamples.Rd | 24
YplantQMC-0.6-3/YplantQMC/man/plot.leaffile.Rd | 47
YplantQMC-0.6-3/YplantQMC/man/plot.plant3d.Rd | 149 +-
YplantQMC-0.6-3/YplantQMC/man/projectplant.Rd | 86 -
YplantQMC-0.6-3/YplantQMC/man/psrdata.Rd | 34
YplantQMC-0.6-3/YplantQMC/man/randomplant.Rd | 115 +-
YplantQMC-0.6-3/YplantQMC/man/readl.Rd | 37
YplantQMC-0.6-3/YplantQMC/man/readp.Rd | 50 -
YplantQMC-0.6-3/YplantQMC/man/runYplant.Rd | 189 ++-
YplantQMC-0.6-3/YplantQMC/man/setHemi.Rd | 90 -
YplantQMC-0.6-3/YplantQMC/man/setLocation.Rd | 56 -
YplantQMC-0.6-3/YplantQMC/man/setMet.Rd | 171 +--
YplantQMC-0.6-3/YplantQMC/man/setPhy.Rd | 110 +-
YplantQMC-0.6-3/YplantQMC/man/summary.plant3d.Rd | 149 +-
YplantQMC-0.6-3/YplantQMC/man/turtle.Rd | 35
YplantQMC-0.6-3/YplantQMC/man/turtle244.Rd | 33
YplantQMC-0.6-3/YplantQMC/man/turtle482.Rd | 36
YplantQMC-0.6-3/YplantQMC/man/viewplot.Rd | 60 -
YplantQMC-0.6-3/YplantQMC/man/xmastime.Rd | 36
YplantQMC-0.6-3/YplantQMC/man/yplantaltaz.Rd | 19
YplantQMC-0.6-3/YplantQMC/man/ypreport.Rd |only
YplantQMC-0.6-3/YplantQMC/man/zenaz.Rd | 114 +-
YplantQMC-0.6-3/YplantQMC/src/bristospitters.f90 | 76 -
YplantQMC-0.6-3/YplantQMC/src/kn.f | 2
154 files changed, 8431 insertions(+), 6342 deletions(-)
Title: yaImpute: An R Package for k-NN Imputation
Diff between yaImpute versions 1.0-22 dated 2014-07-10 and 1.0-23 dated 2014-12-01
Description: Performs nearest neighbor-based imputation using one or more alternative
approaches to processing multivariate data. These include methods based on canonical
correlation analysis, canonical correspondence analysis, and a multivariate adaptation
of the random forest classification and regression techniques of Leo Breiman and Adele
Cutler. Additional methods are also offered. The package includes functions for
comparing the results from running alternative techniques, detecting imputation targets
that are notably distant from reference observations, detecting and correcting
for bias, bootstrapping and building ensemble imputations, and mapping results.
Author: Nicholas L. Crookston, Andrew O. Finley, John Coulston (Sunil Arya and David Mount for ANN)
Maintainer: Nicholas L. Crookston
DESCRIPTION | 14 ++--
MD5 | 26 +++----
NEWS | 9 ++
R/asciigridimpute.R | 25 +++++--
R/errorstats.R | 7 +-
R/varSelection.R | 22 +++---
R/yai.R | 157 ++++++++++++++++++++++++++++++-----------------
R/yaiVarImp.R | 16 +++-
data/MoscowMtStJoe.RData |binary
data/TallyLake.RData |binary
man/applyMask.Rd | 2
man/bestVars.Rd | 2
man/notablydifferent.Rd | 2
man/varSelection.Rd | 4 -
14 files changed, 183 insertions(+), 103 deletions(-)
Title: Particle Learning of Gaussian Processes
Diff between plgp versions 1.1-5 dated 2012-07-24 and 1.1-7 dated 2014-12-01
Description: Sequential Monte Carlo inference for fully Bayesian
Gaussian process (GP) regression and classification models by
particle learning (PL). The sequential nature of inference
and the active learning (AL) hooks provided facilitate thrifty
sequential design (by entropy) and optimization
(by improvement) for classification and
regression models, respectively.
This package essentially provides a generic
PL interface, and functions (arguments to the interface) which
implement the GP models and AL heuristics. Functions for
a special, linked, regression/classification GP model and
an integrated expected conditional improvement (IECI) statistic
is provides for optimization in the presence of unknown constraints.
Separable and isotropic Gaussian, and single-index correlation
functions are supported.
See the examples section of ?plgp and demo(package="plgp")
for an index of demos
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
plgp-1.1-5/plgp/LICENSE |only
plgp-1.1-7/plgp/ChangeLog | 21 +++
plgp-1.1-7/plgp/DESCRIPTION | 42 +++----
plgp-1.1-7/plgp/MD5 | 47 ++++----
plgp-1.1-7/plgp/NAMESPACE | 4
plgp-1.1-7/plgp/R/covar.R | 3
plgp-1.1-7/plgp/R/ieci.R | 2
plgp-1.1-7/plgp/R/pl.R | 61 +++++-----
plgp-1.1-7/plgp/R/plcgp.R | 77 ++++++-------
plgp-1.1-7/plgp/R/plconstgp.R | 72 ++++++------
plgp-1.1-7/plgp/R/plgp.R | 177 ++++++++++++++++---------------
plgp-1.1-7/plgp/demo/plcgp_cush.R | 7 -
plgp-1.1-7/plgp/demo/plcgp_exp.R | 7 -
plgp-1.1-7/plgp/demo/plcgp_exp_entropy.R | 13 +-
plgp-1.1-7/plgp/demo/plconstgp_1d_ieci.R | 15 +-
plgp-1.1-7/plgp/demo/plconstgp_2d_ieci.R | 17 +-
plgp-1.1-7/plgp/demo/plgp_1d_ieci.R | 17 +-
plgp-1.1-7/plgp/demo/plgp_exp_ei.R | 17 +-
plgp-1.1-7/plgp/demo/plgp_sin1d.R | 13 +-
plgp-1.1-7/plgp/man/PL.Rd | 20 ++-
plgp-1.1-7/plgp/man/data.GP.Rd | 14 +-
plgp-1.1-7/plgp/man/plgp-internal.Rd | 4
plgp-1.1-7/plgp/src/covar.c | 6 -
plgp-1.1-7/plgp/src/ieci.c | 9 +
plgp-1.1-7/plgp/src/matrix.c | 18 +--
25 files changed, 376 insertions(+), 307 deletions(-)
Title: Pedometric Tools and Techniques
Diff between pedometrics versions 0.3-0 dated 2014-11-19 and 0.4-1 dated 2014-12-01
Description: This package contains functions to employ many tools and
techniques used in the field of pedometrics (see
http://en.wikipedia.org/wiki/Pedometrics for definition of pedometrics).
These functions were developed to fulfil the demands created by the PhD
research project (2012-2016) entitled Contribution to the Construction of
Models for Predicting Soil Properties, developed by Alessandro Samuel-Rosa
under the supervision of Dr Lucia HC Anjos (Universidade Federal Rural do
Rio de Janeiro, Brazil), Dr Gustavo M Vasques (Embrapa Solos, Brazil), and
Dr Gerard BM Heuvelink (ISRIC - World Soil Information, the Netherlands).
The project is supported by the CAPES, Ministério da Educação, Brasília -
DF 70040-020, Brazil, process ID BEX 11677/13-9. Several functions are
simple wrapper functions that extend the functionalities of other functions
commonly used for the analysis of pedometric data. It should be noted that
changes are likely to occur quite often and using this package as a
dependency for other packages is strongly discouraged.
Author: Alessandro Samuel-Rosa [aut, cre], Lucia Helena Cunha dos Anjos [ths],
Gustavo de Mattos Vasques [ths], Gerard B. M. Heuvelink [ths], Tony Olsen
[ctb], Tom Kincaid [ctb], Juan Carlos Ruiz Cuetos [ctb], Maria Eugenia Polo
Garcia [ctb], Pablo Garcia Rodriguez [ctb], Edzer Pebesma [ctb], Jon Skoien
[ctb], Joshua French [ctb]
Maintainer: Alessandro Samuel-Rosa
pedometrics-0.3-0/pedometrics/R/objMSSD.R |only
pedometrics-0.3-0/pedometrics/R/objectiveLags.R |only
pedometrics-0.3-0/pedometrics/man/objMSSD.Rd |only
pedometrics-0.3-0/pedometrics/man/objectiveLags.Rd |only
pedometrics-0.3-0/pedometrics/man/spJitter.Rd |only
pedometrics-0.3-0/pedometrics/man/spSANN.Rd |only
pedometrics-0.4-1/pedometrics/DESCRIPTION | 67 +-
pedometrics-0.4-1/pedometrics/MD5 | 88 +--
pedometrics-0.4-1/pedometrics/NAMESPACE | 80 +--
pedometrics-0.4-1/pedometrics/R/RcppExports.R |only
pedometrics-0.4-1/pedometrics/R/adjR2.R | 41 +
pedometrics-0.4-1/pedometrics/R/bbox2sp.R | 42 +
pedometrics-0.4-1/pedometrics/R/buildMS.R | 114 +++-
pedometrics-0.4-1/pedometrics/R/cdfPlot.R | 148 ++++-
pedometrics-0.4-1/pedometrics/R/cdfStats.R | 75 +-
pedometrics-0.4-1/pedometrics/R/cdfTable.R | 101 ++-
pedometrics-0.4-1/pedometrics/R/coordenadas.R | 48 +
pedometrics-0.4-1/pedometrics/R/gcpDiff.R | 127 +++-
pedometrics-0.4-1/pedometrics/R/gcpVector.R | 63 +-
pedometrics-0.4-1/pedometrics/R/pedometrics.R |only
pedometrics-0.4-1/pedometrics/R/plotESDA.R | 75 ++
pedometrics-0.4-1/pedometrics/R/plotHD.R | 89 +++
pedometrics-0.4-1/pedometrics/R/plotMS.R | 229 ++++++++
pedometrics-0.4-1/pedometrics/R/spJitter.R | 243 +++++----
pedometrics-0.4-1/pedometrics/R/spSANN.R | 397 ++++-----------
pedometrics-0.4-1/pedometrics/R/spsannMSSD.R |only
pedometrics-0.4-1/pedometrics/R/spsannPPL.R |only
pedometrics-0.4-1/pedometrics/R/statsMS.R | 119 ++++
pedometrics-0.4-1/pedometrics/R/stepVIF.R | 115 +++-
pedometrics-0.4-1/pedometrics/inst/NEWS.Rd | 19
pedometrics-0.4-1/pedometrics/man/adjR2.Rd | 57 --
pedometrics-0.4-1/pedometrics/man/bbox2sp.Rd | 64 +-
pedometrics-0.4-1/pedometrics/man/buildMS.Rd | 183 +++---
pedometrics-0.4-1/pedometrics/man/cdfPlot.Rd | 249 ++++-----
pedometrics-0.4-1/pedometrics/man/cdfStats.Rd | 81 +--
pedometrics-0.4-1/pedometrics/man/cdfTable.Rd | 139 ++---
pedometrics-0.4-1/pedometrics/man/coordenadas.Rd | 60 +-
pedometrics-0.4-1/pedometrics/man/gcpDiff.Rd | 192 +++----
pedometrics-0.4-1/pedometrics/man/gcpVector.Rd | 68 +-
pedometrics-0.4-1/pedometrics/man/pedometrics-package.Rd | 40 +
pedometrics-0.4-1/pedometrics/man/plotESDA.Rd | 104 +--
pedometrics-0.4-1/pedometrics/man/plotHD.Rd | 163 ++----
pedometrics-0.4-1/pedometrics/man/plotMS.Rd | 287 +++++-----
pedometrics-0.4-1/pedometrics/man/rowMinCpp.Rd |only
pedometrics-0.4-1/pedometrics/man/spJitterFinite.Rd |only
pedometrics-0.4-1/pedometrics/man/spsannMSSD.Rd |only
pedometrics-0.4-1/pedometrics/man/spsannPPL.Rd |only
pedometrics-0.4-1/pedometrics/man/statsMS.Rd | 175 +++---
pedometrics-0.4-1/pedometrics/man/stepVIF.Rd | 144 ++---
pedometrics-0.4-1/pedometrics/src |only
50 files changed, 2521 insertions(+), 1765 deletions(-)
Title: Generate Functions to Get or Set Global Options
Diff between GlobalOptions versions 0.0.3 dated 2014-11-02 and 0.0.4 dated 2014-12-01
Description: Generate functions to get or set global options
Author: Zuguang Gu
Maintainer: Zuguang Gu
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
NEWS | 5 +++++
R/setGlobalOptions.R | 2 +-
build/vignette.rds |binary
inst/doc/GlobalOptions.pdf |binary
6 files changed, 14 insertions(+), 9 deletions(-)
Title: Extension to ggplot2.
Diff between GGally versions 0.4.8 dated 2014-08-26 and 0.5.0 dated 2014-12-01
Description: GGally is designed to be a helper to ggplot2. It contains
templates for different plots to be combined into a plot matrix, a parallel
coordinate plot function, as well as a function for making a network plot.
Author: Barret Schloerke
Maintainer: Barret Schloerke
DESCRIPTION | 10
MD5 | 123 +++++----
NAMESPACE | 11
NEWS | 30 ++
R/data-flea.r |only
R/data-nasa.r |only
R/gg-plots.r | 13 -
R/ggcorr.r | 2
R/gglyph.r |only
R/ggnet.r | 5
R/ggpairs.r | 518 +++++++++++++++++++++-------------------
R/ggpairs_add.r |only
R/ggparcoord.r | 72 ++++-
R/ggscatmat.r |only
R/print_ggpairs_old.r |only
data/flea.rda |only
data/nasa.rda |only
man/addAndOverwriteAes.Rd | 2
man/add_ref_boxes.Rd |only
man/add_ref_lines.Rd |only
man/cityServiceFirms.Rd | 2
man/eval_ggpair.Rd | 2
man/find_plot_type.Rd | 2
man/flea.Rd |only
man/get.VarTypes.Rd | 2
man/getPlot.Rd | 2
man/get_plot_type.Rd | 2
man/get_x_axis_labels.Rd | 2
man/gg-add.Rd |only
man/ggally_barDiag.Rd | 2
man/ggally_blank.Rd | 2
man/ggally_box.Rd | 2
man/ggally_cor.Rd | 2
man/ggally_density.Rd | 2
man/ggally_densityDiag.Rd | 2
man/ggally_denstrip.Rd | 2
man/ggally_diagAxis.Rd | 10
man/ggally_dot.Rd | 2
man/ggally_dotAndBox.Rd | 2
man/ggally_facetbar.Rd | 2
man/ggally_facetdensity.Rd | 2
man/ggally_facetdensitystrip.Rd | 2
man/ggally_facethist.Rd | 2
man/ggally_points.Rd | 2
man/ggally_ratio.Rd | 2
man/ggally_smooth.Rd | 2
man/ggally_text.Rd | 2
man/ggcorr.Rd | 4
man/ggfluctuation2.Rd | 2
man/ggnet.Rd | 11
man/ggpairs.Rd | 21 +
man/ggparcoord.Rd | 19 +
man/ggscatmat.Rd |only
man/ggsurv.Rd | 2
man/glyphs.Rd |only
man/happy.Rd | 2
man/is_blank_plot.Rd | 2
man/lowertriangle.Rd |only
man/make_ggpair_text.Rd | 2
man/mapping_color_fill.Rd | 2
man/nasa.Rd |only
man/plot_types.Rd | 2
man/print.ggpairs.Rd | 27 +-
man/print_ggpairs_old.Rd |only
man/putPlot.Rd | 2
man/require_pkgs.Rd | 2
man/scagOrder.Rd | 2
man/scatmat.Rd |only
man/singleClassOrder.Rd | 2
man/skewness.Rd | 2
man/uppertriangle.Rd |only
man/vplayout.Rd | 2
72 files changed, 579 insertions(+), 373 deletions(-)
Title: Analysis of Discretely Observed linear
Birth-And-Death(-and-immigration) Markov Chains
Diff between DOBAD versions 1.0.3 dated 2014-03-10 and 1.0.4 dated 2014-12-01
Description: Frequentist (EM) and Bayesian (MCMC) Methods for Inference of Birth-Death-Immigration Markov Chains
Author: Charles Doss, Vladimir Minin, Marc Suchard
Maintainer: Charles Doss
DOBAD-1.0.3/DOBAD/build |only
DOBAD-1.0.3/DOBAD/inst/doc/BD_EM.Rnw |only
DOBAD-1.0.3/DOBAD/inst/doc/BD_EM_wImmig.R |only
DOBAD-1.0.3/DOBAD/inst/doc/BD_EM_wImmig.Rnw |only
DOBAD-1.0.3/DOBAD/inst/doc/BD_MCMC.R |only
DOBAD-1.0.3/DOBAD/inst/doc/BD_MCMC.Rnw |only
DOBAD-1.0.3/DOBAD/inst/doc/sim_condBD.R |only
DOBAD-1.0.3/DOBAD/inst/doc/sim_condBD.Rnw |only
DOBAD-1.0.3/DOBAD/vignettes/BD_MCMC-lambdaPlot.eps |only
DOBAD-1.0.3/DOBAD/vignettes/BD_MCMC-lambdaPlot.pdf |only
DOBAD-1.0.3/DOBAD/vignettes/BD_MCMC-muPlot.eps |only
DOBAD-1.0.3/DOBAD/vignettes/BD_MCMC-muPlot.pdf |only
DOBAD-1.0.3/DOBAD/vignettes/Rplots.pdf |only
DOBAD-1.0.4/DOBAD/DESCRIPTION | 8 +-
DOBAD-1.0.4/DOBAD/MD5 | 28 +++-------
DOBAD-1.0.4/DOBAD/NAMESPACE | 5 +
DOBAD-1.0.4/DOBAD/R/BD_EM.R | 58 ---------------------
DOBAD-1.0.4/DOBAD/R/BDclasses.R | 58 +++++++++++++++++++++
DOBAD-1.0.4/DOBAD/README |only
DOBAD-1.0.4/DOBAD/inst/doc/BD_EM.pdf |binary
DOBAD-1.0.4/DOBAD/inst/doc/BD_MCMC.pdf |binary
DOBAD-1.0.4/DOBAD/man/BDMC_many-class.Rd |only
DOBAD-1.0.4/DOBAD/vignettes/versions.sty |only
23 files changed, 74 insertions(+), 83 deletions(-)
Title: Nested Block Designs for Unstructured Treatments
Diff between blocksdesign versions 1.2 dated 2014-11-02 and 1.3 dated 2014-12-01
Description: Nested block designs for unstructured treatment sets where blocks
can be repeatedly nested and treatments can have different levels of
replication. Blocks strata are optimized hierarchically with each set of
nested blocks optimized within the levels of the preceding set. Block sizes
are equal if the number of blocks exactly divides the number of plots,
otherwise they differ by at most one plot. The design output is a data
table giving a randomised allocation of treatments to blocks together with
a plan table showing treatments in blocks and a set of blocks-by-treatments
incidence matrices, one for each blocks stratum.
Author: R. N. Edmondson
Maintainer: Rodney Edmondson
DESCRIPTION | 8
MD5 | 8
R/blocks.r | 638 ++++++++++++++++++++++++++++++----------------------
R/pairwise_effics.r | 2
man/blocks.Rd | 88 ++++---
5 files changed, 432 insertions(+), 312 deletions(-)
Title: Constrained Nonlinear Optimization
Diff between alabama versions 2011.9-1 dated 2011-09-16 and 2014.12-1 dated 2014-12-01
Description: Augmented Lagrangian Adaptive Barrier Minimization
Algorithm for optimizing smooth nonlinear objective functions
with constraints. Linear or nonlinear equality and inequality
constraints are allowed.
Author: Ravi Varadhan (with contributions from Gabor Grothendieck)
Maintainer: Ravi Varadhan
alabama-2011.9-1/alabama/NAMESPACE.txt |only
alabama-2014.12-1/alabama/DESCRIPTION | 15 +++++++--------
alabama-2014.12-1/alabama/MD5 | 12 ++++++------
alabama-2014.12-1/alabama/NAMESPACE |only
alabama-2014.12-1/alabama/R/auglag.R | 2 +-
alabama-2014.12-1/alabama/R/constrOptim.nl.R | 2 +-
alabama-2014.12-1/alabama/demo/00Index | 2 +-
alabama-2014.12-1/alabama/man/alabama-package.Rd | 5 ++---
8 files changed, 18 insertions(+), 20 deletions(-)
Title: Trajectory Analysis
Diff between traj versions 1.0 dated 2014-10-22 and 1.1 dated 2014-12-01
Description: Implements the three-step procedure proposed by Leffondree et al. (2004) to identify clusters of individual longitudinal trajectories. The procedure involves (1) calculating 24 measures describing the features of the trajectories; (2) using factor analysis to select a subset of the 24 measures and (3) using cluster analysis to identify clusters of trajectories, and classify each individual trajectory in one of the clusters.
Author: Marie-Pierre Sylvestre, Dan Vatnik
Maintainer: Dan Vatnik
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++++---
build |only
inst/doc/Measurement_Equations.pdf |binary
inst/doc/trajVignette.R |only
inst/doc/trajVignette.Rnw |only
inst/doc/trajVignette.pdf |only
man/traj-package.Rd | 9 ++++-----
vignettes |only
9 files changed, 16 insertions(+), 12 deletions(-)
More information about RegressionFactory at CRAN
Permanent link
Title: Mathematical Modeling of Infectious Disease
Diff between EpiModel versions 1.1.1 dated 2014-11-02 and 1.1.2 dated 2014-12-01
Description: Tools for simulating mathematical models of infectious disease.
Epidemic model classes include deterministic compartmental models,
stochastic individual contact models, and stochastic network models.
Disease types include SI, SIR, and SIS epidemics with and without
demography, with tools available for expansion to model complex epidemic
processes.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Li Wang [ctb]
Maintainer: Samuel Jenness
app.R | 4
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.1/EpiModel/inst/CITATION |only
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/DESCRIPTION | 16
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/MD5 | 62
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/NAMESPACE | 1
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/NEWS | 36
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/EpiModel-package.r | 4
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/control.R | 3
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/dcm.R | 19
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/get.R | 54
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/merge.R | 47
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/net.utils.R | 91 -
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/netdx.R | 407 +++--
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/plot.R | 726 ++++++----
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/R/print.r | 27
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/build/vignette.rds |binary
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/inst/doc/Intro.Rmd | 21
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/inst/doc/Intro.html | 260 ++-
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/inst/shiny/dcm/app.R | 3
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/EpiModel-package.Rd | 4
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/bipvals.Rd | 12
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/check_bip_degdist.Rd | 19
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/control.dcm.Rd | 8
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/get_sims.Rd |only
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/merge.netsim.Rd | 27
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/netdx.Rd | 59
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/plot.icm.Rd | 12
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/man/plot.netdx.Rd | 119 +
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/tests/testthat/test-dcm-dede.R |only
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/tests/testthat/test-net-long.R | 2
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/tests/testthat/test-netdx.R | 183 +-
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/tests/testthat/test-netoffset.R |only
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/tests/testthat/test-netsim.R | 51
tmp/cranberry2a1a6a7eb6a5/EpiModel-1.1.2/EpiModel/vignettes/Intro.Rmd | 21
34 files changed, 1459 insertions(+), 839 deletions(-)
Title: Affinity Propagation Clustering
Diff between apcluster versions 1.3.5 dated 2014-06-26 and 1.4.0 dated 2014-12-01
Description: The apcluster package implements Frey's and Dueck's
Affinity Propagation clustering in R. The algorithms are
largely analogous to the Matlab code published by Frey and
Dueck. The package further provides leveraged affinity
propagation and an algorithm for exemplar-based agglomerative
clustering that can also be used to join clusters obtained
from affinity propagation. Various plotting functions are
available for analyzing clustering results.
Author: Ulrich Bodenhofer, Johannes Palme, Chrats Melkonian, Andreas Kothmeier
Maintainer: Ulrich Bodenhofer
apcluster-1.3.5/apcluster/R/preferenceRange.R |only
apcluster-1.3.5/apcluster/R/sparseToFull.R |only
apcluster-1.3.5/apcluster/man/preferenceRange.Rd |only
apcluster-1.3.5/apcluster/man/similarity.Rd |only
apcluster-1.3.5/apcluster/man/sparseToFull.Rd |only
apcluster-1.4.0/apcluster/DESCRIPTION | 15 -
apcluster-1.4.0/apcluster/MD5 | 65 ++--
apcluster-1.4.0/apcluster/NAMESPACE | 8
apcluster-1.4.0/apcluster/NEWS | 26 +
apcluster-1.4.0/apcluster/R/AllClasses.R | 6
apcluster-1.4.0/apcluster/R/AllGenerics.R | 9
apcluster-1.4.0/apcluster/R/access-methods.R | 45 +--
apcluster-1.4.0/apcluster/R/aggExCluster-methods.R | 29 ++
apcluster-1.4.0/apcluster/R/apcluster-methods.R | 198 ++++++++++++++-
apcluster-1.4.0/apcluster/R/apclusterK-methods.R | 72 ++++-
apcluster-1.4.0/apcluster/R/apclusterL-methods.R | 2
apcluster-1.4.0/apcluster/R/coerce-methods.R | 4
apcluster-1.4.0/apcluster/R/conversions.R |only
apcluster-1.4.0/apcluster/R/heatmap-methods.R | 51 +++
apcluster-1.4.0/apcluster/R/preferenceRange-methods.R |only
apcluster-1.4.0/apcluster/R/sort-methods.R | 2
apcluster-1.4.0/apcluster/TODO |only
apcluster-1.4.0/apcluster/build/vignette.rds |binary
apcluster-1.4.0/apcluster/inst/doc/apcluster.R | 113 +++++---
apcluster-1.4.0/apcluster/inst/doc/apcluster.Rnw | 120 ++++++++-
apcluster-1.4.0/apcluster/inst/doc/apcluster.pdf |binary
apcluster-1.4.0/apcluster/man/APResult-class.Rd | 4
apcluster-1.4.0/apcluster/man/AggExResult-class.Rd | 4
apcluster-1.4.0/apcluster/man/ExClust-class.Rd | 4
apcluster-1.4.0/apcluster/man/aggExCluster-methods.Rd | 8
apcluster-1.4.0/apcluster/man/apcluster-deprecated.Rd |only
apcluster-1.4.0/apcluster/man/apcluster-methods.Rd | 146 ++++++-----
apcluster-1.4.0/apcluster/man/apclusterK-methods.Rd | 49 ++-
apcluster-1.4.0/apcluster/man/conversions.Rd |only
apcluster-1.4.0/apcluster/man/heatmap-methods.Rd | 8
apcluster-1.4.0/apcluster/man/preferenceRange-methods.Rd |only
apcluster-1.4.0/apcluster/man/similarities.Rd |only
apcluster-1.4.0/apcluster/src/apclusterSparseC.cpp |only
apcluster-1.4.0/apcluster/src/preferenceRangeC.cpp |only
apcluster-1.4.0/apcluster/src/preferenceRangeSparseC.cpp |only
apcluster-1.4.0/apcluster/vignettes/apcluster.Rnw | 120 ++++++++-
41 files changed, 878 insertions(+), 230 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Diff between multcomp versions 1.3-7 dated 2014-10-02 and 1.3-8 dated 2014-12-01
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre],
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb]
Maintainer: Torsten Hothorn
DESCRIPTION | 8 +++----
MD5 | 24 ++++++++++-----------
R/pqfunctions.R | 5 +++-
build/vignette.rds |binary
data/cholesterol.rda |binary
data/litter.rda |binary
inst/NEWS | 4 +++
inst/doc/chfls1.pdf |binary
inst/doc/generalsiminf.pdf |binary
inst/doc/multcomp-examples.pdf |binary
tests/Examples/multcomp-Ex.Rout.save | 17 +++++++++++---
tests/bugfix.R | 6 +++++
tests/bugfix.Rout.save | 40 ++++++++++++++++++++++++++++++-----
13 files changed, 78 insertions(+), 26 deletions(-)
Title: Ordinary Kriging
Diff between kriging versions 1.0.1 dated 2011-12-21 and 1.1 dated 2014-12-01
Description: Simple and highly optimized ordinary kriging algorithm to plot geographical data
Author: Omar E. Olmedo
Maintainer: Omar E. Olmedo
DESCRIPTION | 7 ++++---
MD5 | 6 +++---
man/image.kriging.Rd | 3 ---
man/plot.kriging.Rd | 3 ---
4 files changed, 7 insertions(+), 12 deletions(-)
Title: Chinese Text Segmentation
Diff between jiebaR versions 0.2 dated 2014-11-23 and 0.3 dated 2014-12-01
Description: Chinese text segmentation, keyword extraction and speech tagging
For R.
Author: Qin Wenfeng, and the authors of CppJieba for the included version of
CppJieba
Maintainer: Qin Wenfeng
jiebaR-0.2/jiebaR/man/EditDict.Rd |only
jiebaR-0.2/jiebaR/man/ShowDictPath.Rd |only
jiebaR-0.2/jiebaR/man/equals-.simhash.Rd |only
jiebaR-0.2/jiebaR/man/tag.Rd |only
jiebaR-0.3/jiebaR/DESCRIPTION | 10
jiebaR-0.3/jiebaR/MD5 | 61 +-
jiebaR-0.3/jiebaR/NAMESPACE | 15
jiebaR-0.3/jiebaR/NEWS |only
jiebaR-0.3/jiebaR/R/RcppExports.R | 4
jiebaR-0.3/jiebaR/R/jiebaR-package.r | 6
jiebaR-0.3/jiebaR/R/jiebar.R | 53 -
jiebaR-0.3/jiebaR/R/keywords.R | 5
jiebaR-0.3/jiebaR/R/overload.R | 36 -
jiebaR-0.3/jiebaR/R/print.R | 6
jiebaR-0.3/jiebaR/R/quick.R |only
jiebaR-0.3/jiebaR/R/segment.R | 9
jiebaR-0.3/jiebaR/R/simhash.R | 9
jiebaR-0.3/jiebaR/R/tagger.R | 19
jiebaR-0.3/jiebaR/R/tools.R | 116 ----
jiebaR-0.3/jiebaR/R/zzz.R | 16
jiebaR-0.3/jiebaR/README.md | 111 +++-
jiebaR-0.3/jiebaR/inst/dict/backup.rda |only
jiebaR-0.3/jiebaR/inst/dict/model.rda |only
jiebaR-0.3/jiebaR/inst/include/Limonp/StringUtil.hpp | 512 +++++++++----------
jiebaR-0.3/jiebaR/man/edit_dict.Rd |only
jiebaR-0.3/jiebaR/man/filecoding.Rd | 4
jiebaR-0.3/jiebaR/man/jiebaR.Rd | 5
jiebaR-0.3/jiebaR/man/less-than-equals-.keywords.Rd | 3
jiebaR-0.3/jiebaR/man/less-than-equals-.qseg.Rd |only
jiebaR-0.3/jiebaR/man/less-than-equals-.segment.Rd | 3
jiebaR-0.3/jiebaR/man/less-than-equals-.simhash.Rd | 3
jiebaR-0.3/jiebaR/man/less-than-equals-.tagger.Rd | 3
jiebaR-0.3/jiebaR/man/set_qsegmodel.Rd |only
jiebaR-0.3/jiebaR/man/show_dictpath.Rd |only
jiebaR-0.3/jiebaR/man/tagging.Rd |only
jiebaR-0.3/jiebaR/man/worker.Rd | 25
jiebaR-0.3/jiebaR/src/detect.cpp | 14
jiebaR-0.3/jiebaR/tests/testthat/test-cut.R | 2
38 files changed, 565 insertions(+), 485 deletions(-)
Title: Facilitates Automated HTML Report Creation
Diff between HTMLUtils versions 0.1.5 dated 2012-05-18 and 0.1.6 dated 2014-12-01
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
Author: "Markus Loecher, Berlin School of Economics and Law (BSEL)"
Maintainer: "Markus Loecher, Berlin School of Economics and Law (BSEL)"
HTMLUtils-0.1.5/HTMLUtils/Misc |only
HTMLUtils-0.1.6/HTMLUtils/DESCRIPTION | 17 +--
HTMLUtils-0.1.6/HTMLUtils/MD5 | 32 +++---
HTMLUtils-0.1.6/HTMLUtils/R/BasicHTML.R | 31 ++++--
HTMLUtils-0.1.6/HTMLUtils/R/FramedHTML.R | 41 +++++---
HTMLUtils-0.1.6/HTMLUtils/R/myHTMLInitFile.R | 9 +
HTMLUtils-0.1.6/HTMLUtils/inst/Misc |only
HTMLUtils-0.1.6/HTMLUtils/man/BasicHTML.Rd | 86 ++++++++++--------
HTMLUtils-0.1.6/HTMLUtils/man/FramedHTML.Rd | 98 +++++++++++----------
HTMLUtils-0.1.6/HTMLUtils/man/HTMLUtils-package.Rd | 21 ++--
HTMLUtils-0.1.6/HTMLUtils/man/HTMLhref.Rd | 2
HTMLUtils-0.1.6/HTMLUtils/man/HTMLsortedTable.Rd | 2
HTMLUtils-0.1.6/HTMLUtils/man/InstallJSC.Rd | 2
HTMLUtils-0.1.6/HTMLUtils/man/MyReportBegin.Rd | 2
HTMLUtils-0.1.6/HTMLUtils/man/MyReportEnd.Rd | 2
HTMLUtils-0.1.6/HTMLUtils/man/makePathName.Rd | 2
HTMLUtils-0.1.6/HTMLUtils/man/myHTMLInitFile.Rd | 2
17 files changed, 196 insertions(+), 153 deletions(-)
Title: Functional Data Analysis and Utilities for Statistical Computing
Diff between fda.usc versions 1.2.0 dated 2014-05-29 and 1.2.1 dated 2014-12-01
Description: Routines for exploratory and descriptive analysis of functional data such as depth measurements, atypical curves detection, regression models, supervised classification, unsupervised classification and functional analysis of variance.
Author: Manuel Febrero Bande [aut],
Manuel Oviedo de la Fuente [aut, cre],
Pedro Galeano [ctb],
Alicia Nieto [ctb],
Eduardo Garcia-Portugues [ctb]
Maintainer: Manuel Oviedo de la Fuente
DESCRIPTION | 11 -
MD5 | 133 +++++++-------
NAMESPACE | 5
NEWS | 16 +
R/Descriptive.R | 6
R/GCV.S.R | 5
R/S.KNN.R | 17 +
R/anova.RPm.R | 2
R/classif.DD.r | 162 ++++++++++--------
R/classif.gkam.R | 13 -
R/classif.glm.R | 16 +
R/classif.gsam.R | 19 +-
R/classif.np.r | 14 -
R/dcor.fdist.r |only
R/dcor.fdist2.r |only
R/depth.FM.r | 31 ++-
R/depth.RP.r | 58 ++++--
R/depth.RPD.r | 5
R/depth.RPp.r | 10 -
R/depth.RT.r | 10 -
R/depth.mode.r | 92 ++++++----
R/fdata.R | 52 ++++-
R/fregre.PPC.PPLS.R | 16 -
R/fregre.glm.R | 358 +++++++++++++++++++++++++++++++++++++++-
R/fregre.gsam.R | 47 ++++-
R/fregre.lm.r | 354 ++++++++++++++++++++++++++++++++++++++-
R/fregre.np.cv.r | 25 +-
R/fregre.np.r | 6
R/metric.dist.R | 1
R/outliers.depth.pond.r | 8
R/outliers.depth.trim.r | 7
R/par.fda.usc.r |only
R/plot.bifd.R |only
R/plot.fdata.R | 15 -
R/predict.classif.R | 137 +++++++++------
R/predict.fregre.glm.R | 3
R/predict.fregre.gsam.R | 17 +
R/rproc2fdata.R | 9 -
R/semimetric.NPFDA.r | 22 +-
R/summary.fregre.fd.r | 6
man/CV.S.Rd | 15 -
man/DepthFunctional.Rd | 17 +
man/DepthFunctionalIntegrate.Rd | 53 +++--
man/DepthMultivariate.Rd | 3
man/Descriptive.Rd | 2
man/GCV.S.Rd | 8
man/Outliers.fdata.Rd | 20 +-
man/PCvM.statistic.Rd | 3
man/aemet.Rd | 11 -
man/classif.DD.Rd | 2
man/classif.depth.Rd | 21 +-
man/dcor.test.rd |only
man/fdata.deriv.Rd | 9 -
man/flm.Ftest.Rd | 16 -
man/flm.test.Rd | 169 ++++++++----------
man/fregre.basis.cv.Rd | 12 -
man/fregre.gkam.Rd | 53 +++--
man/fregre.glm.Rd | 2
man/fregre.gsam.Rd | 25 --
man/fregre.pc.cv.Rd | 4
man/fregre.ppls.Rd | 9 -
man/fregre.ppls.cv.Rd | 8
man/influence.quan.Rd | 29 +--
man/kmeans.fd.Rd | 23 +-
man/min.np.Rd | 15 -
man/plot.fdata.Rd | 10 -
man/predict.classif.Rd | 45 ++---
man/rproc2fdata.Rd | 8
man/summary.fregre.gkam.Rd | 2
man/tecator.Rd | 2
70 files changed, 1544 insertions(+), 760 deletions(-)
Title: Compares the Distribution of Sister Clades Through a Phylogeny
Diff between nodiv versions 0.9.3 dated 2014-11-21 and 1.0.0 dated 2014-12-01
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard
DESCRIPTION | 10 +++++-----
MD5 | 30 +++++++++++++++---------------
NAMESPACE | 1 +
R/General_figure_functions.R | 9 +++++++--
R/Methods_for_data_objects.R | 26 +++++++++++++++++++-------
R/Methods_for_result_objects.R | 39 +++++++++++++++++++++++++++++++++------
R/Nodesig_function.R | 4 ++--
R/Prepare_data.R | 29 ++++++++++++++++++++---------
R/Prepare_result_object.R | 10 +++++++++-
inst/CITATION | 6 +++---
man/Node_analysis.Rd | 2 +-
man/Nodesig.Rd | 2 +-
man/nodiv-package.Rd | 5 +++--
man/plotSOS.Rd | 2 +-
man/plot_points.Rd | 3 +++
man/subsample.Rd | 4 +++-
16 files changed, 126 insertions(+), 56 deletions(-)
Title: Visualization of spatial and spatio-temporal objects in Google
Earth
Diff between plotKML versions 0.4-5 dated 2014-07-31 and 0.4-7 dated 2014-12-01
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules.
Author: Tomislav Hengl [cre, aut],
Pierre Roudier [ctb],
Dylan Beaudette [ctb],
Edzer Pebesma [ctb],
Michael Blaschek [ctb]
Maintainer: Tomislav Hengl
DESCRIPTION | 10 -
MD5 | 89 +++++++-------
R/AAAA.R | 181 ++++++++++++-----------------
R/geopath.R | 6
R/getWikiMedia.ImageInfo.R | 2
R/grid2poly.R | 12 -
R/layer.Raster.R | 69 +++++++----
R/layer.SoilProfileCollection.R | 2
R/layer.SpatialLines.R | 3
R/layer.SpatialPixels.R | 25 +++-
R/layer.SpatialPoints.R | 3
R/plotKML.RasterBrickSimulations.R | 27 ++--
R/plotKML.RasterBrickTimeSeries.R | 27 ++--
R/plotKML.SpatialMaxEntOutput.R | 7 -
R/plotKML.SpatialPredictions.R | 7 -
R/plotKML.SpatialSamplingPattern.R | 7 -
R/plotKML.SpatialVectorsSimulations.R | 7 -
R/plotKML.sp.R | 72 ++++++++---
R/reproject.R | 40 ++++--
R/spMetadata.R | 2
R/spPhoto.R | 2
R/vect2rast.R | 11 -
inst/CITATION |only
inst/doc/jss1079.R | 52 ++++----
inst/doc/jss1079.Rnw | 124 ++++++++++++-------
inst/doc/jss1079.pdf |binary
man/HRtemp08.Rd | 2
man/layer.Raster.Rd | 10 +
man/layer.SpatialLines.Rd | 4
man/layer.SpatialPixels.Rd | 10 +
man/layer.SpatialPoints.Rd | 4
man/plotKML.Rd | 36 +++--
man/plotKML.env.Rd | 10 -
man/reproject.Rd | 18 +-
vignettes/Fig_RasterBrickTimeSeries.jpg |binary
vignettes/Fig_SpatialPredictions_meuse.jpg |binary
vignettes/Fig_bubble_plot.jpg |binary
vignettes/Fig_eberg_two_aesthetics.jpg |binary
vignettes/Fig_fmd_google_earth_1.jpg |binary
vignettes/Fig_fmd_google_earth_2.jpg |binary
vignettes/Fig_fmd_google_earth_3.jpg |binary
vignettes/Fig_layerRaster_legend.jpg |binary
vignettes/Fig_space_time_cube.png |binary
vignettes/Fig_spacetime_objects_types.pdf |binary
vignettes/jss1079.Rnw | 124 ++++++++++++-------
vignettes/jss1079.bib | 18 +-
46 files changed, 595 insertions(+), 428 deletions(-)
Title: Data sets included in Utts and Heckard's Mind on Statistics
Diff between MindOnStats versions 0.8 dated 2012-11-01 and 0.11 dated 2014-12-01
Description: 66 data sets that were imported using read.table() where appropriate but more commonly after converting to a csv file for importing via read.csv().
Author: A. Jonathan R. Godfrey [aut, cre]
Maintainer: A. Jonathan R. Godfrey
MindOnStats-0.11/MindOnStats/DESCRIPTION | 20 -
MindOnStats-0.11/MindOnStats/MD5 | 198 ++++++++-------
MindOnStats-0.11/MindOnStats/data/Aspirin.rda |only
MindOnStats-0.11/MindOnStats/data/AspirinCh11.rda |only
MindOnStats-0.11/MindOnStats/data/BMI.rda |binary
MindOnStats-0.11/MindOnStats/data/Batteries.rda |binary
MindOnStats-0.11/MindOnStats/data/Beans.rda |binary
MindOnStats-0.11/MindOnStats/data/BearsFemale.rda |binary
MindOnStats-0.11/MindOnStats/data/Bike.rda |binary
MindOnStats-0.11/MindOnStats/data/Blinking.rda |only
MindOnStats-0.11/MindOnStats/data/BodyStats.rda |only
MindOnStats-0.11/MindOnStats/data/CEOData.rda |binary
MindOnStats-0.11/MindOnStats/data/Carpark.rda |binary
MindOnStats-0.11/MindOnStats/data/Cash5.rda |binary
MindOnStats-0.11/MindOnStats/data/Cereals.rda |binary
MindOnStats-0.11/MindOnStats/data/Ch4Heights.rda |binary
MindOnStats-0.11/MindOnStats/data/Cholest.rda |binary
MindOnStats-0.11/MindOnStats/data/ChugTime.rda |binary
MindOnStats-0.11/MindOnStats/data/Clasping.rda |only
MindOnStats-0.11/MindOnStats/data/Curiosity.rda |binary
MindOnStats-0.11/MindOnStats/data/Deprived.rda |binary
MindOnStats-0.11/MindOnStats/data/EggCrush.rda |binary
MindOnStats-0.11/MindOnStats/data/Endurance.rda |only
MindOnStats-0.11/MindOnStats/data/Falcon.rda |binary
MindOnStats-0.11/MindOnStats/data/Fantasy5.99.rda |binary
MindOnStats-0.11/MindOnStats/data/Fantasy5.rda |binary
MindOnStats-0.11/MindOnStats/data/Fashion.rda |binary
MindOnStats-0.11/MindOnStats/data/Fish.rda |binary
MindOnStats-0.11/MindOnStats/data/Flyers.rda |only
MindOnStats-0.11/MindOnStats/data/GSS93.rda |binary
MindOnStats-0.11/MindOnStats/data/GSS93Samp.rda |binary
MindOnStats-0.11/MindOnStats/data/GoGoGo.rda |binary
MindOnStats-0.11/MindOnStats/data/HandHeight.rda |binary
MindOnStats-0.11/MindOnStats/data/HappyFace.rda |binary
MindOnStats-0.11/MindOnStats/data/HeightFoot.rda |binary
MindOnStats-0.11/MindOnStats/data/Holden.rda |only
MindOnStats-0.11/MindOnStats/data/HoldingBreath.rda |binary
MindOnStats-0.11/MindOnStats/data/HumTemp.rda |binary
MindOnStats-0.11/MindOnStats/data/IdealWt.rda |binary
MindOnStats-0.11/MindOnStats/data/IdealWtMen.rda |binary
MindOnStats-0.11/MindOnStats/data/IdealWtWomen.rda |binary
MindOnStats-0.11/MindOnStats/data/Letters.rda |binary
MindOnStats-0.11/MindOnStats/data/LiftStairs.rda |only
MindOnStats-0.11/MindOnStats/data/Lifts.rda |binary
MindOnStats-0.11/MindOnStats/data/Maintenance.rda |only
MindOnStats-0.11/MindOnStats/data/Mobiles.rda |binary
MindOnStats-0.11/MindOnStats/data/Movies.rda |binary
MindOnStats-0.11/MindOnStats/data/MusicCDs.rda |binary
MindOnStats-0.11/MindOnStats/data/OpticalIllusions.rda |only
MindOnStats-0.11/MindOnStats/data/PaperPlanes.rda |binary
MindOnStats-0.11/MindOnStats/data/PennState1.rda |binary
MindOnStats-0.11/MindOnStats/data/PennState1F.rda |binary
MindOnStats-0.11/MindOnStats/data/PennState1M.rda |binary
MindOnStats-0.11/MindOnStats/data/PennState2.rda |binary
MindOnStats-0.11/MindOnStats/data/PennState3.rda |binary
MindOnStats-0.11/MindOnStats/data/PennState4.rda |binary
MindOnStats-0.11/MindOnStats/data/PennState5.rda |binary
MindOnStats-0.11/MindOnStats/data/PerHouse.rda |binary
MindOnStats-0.11/MindOnStats/data/Physical.rda |binary
MindOnStats-0.11/MindOnStats/data/Pizza.rda |only
MindOnStats-0.11/MindOnStats/data/PopSong.rda |binary
MindOnStats-0.11/MindOnStats/data/ProfBooks.rda |binary
MindOnStats-0.11/MindOnStats/data/PulseMarch.rda |binary
MindOnStats-0.11/MindOnStats/data/Rainfall.rda |binary
MindOnStats-0.11/MindOnStats/data/Reading.rda |only
MindOnStats-0.11/MindOnStats/data/Reflexes.rda |binary
MindOnStats-0.11/MindOnStats/data/RollingFriction.rda |binary
MindOnStats-0.11/MindOnStats/data/SATS98.rda |binary
MindOnStats-0.11/MindOnStats/data/ServiceStation.rda |only
MindOnStats-0.11/MindOnStats/data/SignDist.rda |binary
MindOnStats-0.11/MindOnStats/data/SleepStudy.rda |binary
MindOnStats-0.11/MindOnStats/data/SpeedLimit.rda |binary
MindOnStats-0.11/MindOnStats/data/Study.rda |only
MindOnStats-0.11/MindOnStats/data/Sunnies.rda |only
MindOnStats-0.11/MindOnStats/data/TVAds.rda |only
MindOnStats-0.11/MindOnStats/data/Temperature.rda |binary
MindOnStats-0.11/MindOnStats/data/Textbooks.rda |binary
MindOnStats-0.11/MindOnStats/data/TextbooksCh8.rda |only
MindOnStats-0.11/MindOnStats/data/TimePerception.rda |binary
MindOnStats-0.11/MindOnStats/data/TurkeyPop.rda |binary
MindOnStats-0.11/MindOnStats/data/UCDWomHt.rda |binary
MindOnStats-0.11/MindOnStats/data/UCDavis1.rda |binary
MindOnStats-0.11/MindOnStats/data/UCDavis1F.rda |binary
MindOnStats-0.11/MindOnStats/data/UCDavis1M.rda |binary
MindOnStats-0.11/MindOnStats/data/UCDavis2.rda |binary
MindOnStats-0.11/MindOnStats/data/UCDch5.rda |binary
MindOnStats-0.11/MindOnStats/data/VarianceOfStrength.rda |binary
MindOnStats-0.11/MindOnStats/data/VisualAcuity.rda |binary
MindOnStats-0.11/MindOnStats/data/WatchOut.rda |binary
MindOnStats-0.11/MindOnStats/data/WorldRecords.rda |only
MindOnStats-0.11/MindOnStats/data/WtHeightM.rda |binary
MindOnStats-0.11/MindOnStats/data/YouthRisk.rda |binary
MindOnStats-0.11/MindOnStats/inst |only
MindOnStats-0.11/MindOnStats/man/Asia-Pacific.Rd | 6
MindOnStats-0.11/MindOnStats/man/Asia-Pacific2Ed.Rd |only
MindOnStats-0.11/MindOnStats/man/MindOnStats-package.Rd | 10
MindOnStats-0.8/MindOnStats/doc |only
97 files changed, 126 insertions(+), 108 deletions(-)
Title: A Robust, High Performance JSON Parser and Generator for R
Diff between jsonlite versions 0.9.13 dated 2014-10-21 and 0.9.14 dated 2014-12-01
Description: A fast JSON parser and generator optimized for statistical data
and the web. Started out as a fork of RJSONIO, but has been completely
rewritten in recent versions. The package offers flexible, robust, high
performance tools for working with JSON in R and is particularly powerful
for building pipelines and interacting with web APIs. The implementation is
based on the mapping described in the vignette of the package (Ooms, 2014).
In addition to drop-in replacements for toJSON and fromJSON, jsonlite
contains functions to stream, validate, and prettify JSON data. The unit
tests included with the package verify that all edge cases are encoded and
decoded consistently for use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Lloyd Hilaiel
Maintainer: Jeroen Ooms
DESCRIPTION | 32 +--
LICENSE |only
MD5 | 61 +++--
NAMESPACE | 1
NEWS | 9
R/asJSON.data.frame.R | 15 +
R/asJSON.int64.R | 2
R/asJSON.numeric.R | 15 +
R/download.R | 16 +
R/fromJSON.R | 30 +-
R/num_to_char.R | 9
R/prettify.R | 19 -
R/stream.R | 13 -
R/toJSON.R | 25 --
R/unbox.R | 17 +
build/vignette.rds |binary
inst/CITATION |only
inst/doc/json-aaquickstart.Rmd | 8
inst/doc/json-aaquickstart.html | 416 ++++++++++++----------------------------
inst/doc/json-mapping.pdf |binary
inst/doc/json-opencpu.pdf |binary
man/fromJSON.Rd | 32 +--
man/prettify.Rd | 4
man/stream_in.Rd | 13 -
man/unbox.Rd | 14 -
src/Makevars | 7
src/integer64_to_na.c |only
src/modp_numtoa.c | 10
src/num_to_char.c | 10
src/parse.c | 19 +
src/prettify.c | 11 -
src/validate.c | 19 +
vignettes/json-aaquickstart.Rmd | 8
33 files changed, 384 insertions(+), 451 deletions(-)
Title: The skew-normal and skew-t distributions
Diff between sn versions 1.1-1 dated 2014-10-30 and 1.1-2 dated 2014-12-01
Description: Define and manipulate probability distributions of the skew-normal
family and some related ones (notably the skew-t family) and provide related
statistical methods for data fitting and diagnostics, in the univariate and
the multivariate case.
Author: Adelchi Azzalini
Maintainer: Adelchi Azzalini
ChangeLog | 13 ++-
DESCRIPTION | 8 +-
MD5 | 32 ++++-----
NAMESPACE | 14 ++--
R/sn-funct.R | 174 +++++++++++++++++++++++++++++---------------------
R/sn_S4.R | 22 +-----
data/ais.rda |binary
data/barolo.rda |binary
data/frontier.rda |binary
data/wines.rda |binary
inst/CITATION | 4 -
man/coef.selm.Rd |only
man/dmst.Rd | 5 -
man/plot.selm.Rd | 13 +--
man/residuals.selm.Rd |only
man/selm-class.Rd | 20 +++--
man/selm.Rd | 16 ++--
man/summary.selm.Rd | 33 ++++++---
18 files changed, 195 insertions(+), 159 deletions(-)
Title: A Connection Interface to Libcurl
Diff between curl versions 0.2 dated 2014-11-20 and 0.3 dated 2014-12-01
Description: The curl() function provides a drop-in replacement for base url()
with better performance and support for http 2.0, ssl (https://, ftps://),
gzip, deflate and other libcurl goodies. This interface is implemented
using the RConnection API in order to support incremental processing of
both binary and text streams. If you are looking for a more-user-friendly
http client, try the RCurl or httr packages instead.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
DESCRIPTION | 23 +++---
MD5 | 22 +++--
NAMESPACE | 3
NEWS | 10 ++
R/curl.R | 5 -
R/curl_download.R |only
configure |only
man/curl_download.Rd |only
src/Makevars | 4 -
src/Makevars.win | 2
src/curl.c | 190 ++++++++++++++++++++++-----------------------------
src/download.c |only
src/utils.c |only
src/utils.h |only
tools/winlibs.R | 13 ++-
15 files changed, 134 insertions(+), 138 deletions(-)