Title: Convenience Functions and Tests for Working With the Net
Promoter Score (NPS)
Diff between NPS versions 1.0 dated 2014-04-07 and 1.1 dated 2014-12-03
Description: Small functions to make working with survey data in the context of
a Net Promoter programme easier. Specifically, data transformation methods,
some methods for examining the statistical properties of the NPS, such as
its variance and standard errors, and some simple inferential testing
procedures. Net Promoter and NPS are registered trademarks of Bain &
Company, Satmetrix Systems and Fred Reichheld.
Author: Brendan Rocks
Maintainer: Brendan Rocks
DESCRIPTION | 22 +++++++------
MD5 | 26 +++++++--------
NAMESPACE | 2 +
R/Documented_Package_and_Data_details.r | 9 +++--
R/Documented_Small_NPS_Functions.r | 53 ++++++++++++++++----------------
man/NPS-package.Rd | 22 +++++++------
man/npc.Rd | 12 ++-----
man/nps.Rd | 19 ++---------
man/nps.se.Rd | 18 +++-------
man/nps.test.Rd | 52 ++++++++++---------------------
man/nps.var.Rd | 17 +++-------
man/npvar.Rd | 16 +++------
man/scalestrip.Rd | 22 ++++---------
man/testdata.Rd | 4 +-
14 files changed, 123 insertions(+), 171 deletions(-)
Title: Analysis and Visualization of Plant Leaf Angle Distributions
Diff between LeafAngle versions 1.2 dated 2012-12-19 and 1.2-1 dated 2014-12-03
Description: A leaf angle distribution is a special distribution that is defined between 0 and 90 degrees, and a number of distributions are used to characterize the leaf angle distribution in real plant canopies. This package includes methods to fit distributions to data, visualize the fit, and compare fits of nine different distributions.
Author: Remko Duursma
Maintainer: Remko Duursma
DESCRIPTION | 17 ++++++-----------
MD5 | 6 +++---
data/eteret.rda |binary
man/fitdistribution.Rd | 3 ++-
4 files changed, 11 insertions(+), 15 deletions(-)
Title: Estimate Lower Extreme Quantile with the Censored Weibull MLE
and Censored Weibull Mixture
Diff between extWeibQuant versions 1.0 dated 2014-04-11 and 1.1 dated 2014-12-03
Description: It implements the subjectively censored Weibull MLE and censored Weibull mixture methods for the lower quantile estimation. Quantile estimates from these two methods are robust to model misspecification in the lower tail. It also includes functions to evaluation the standard error of the resulting quantile estimates. Also, the methods here can be used to fit the Weibull or Weibull mixture for the Type-I or Type-II right censored data.
Author: Yang (Seagle) Liu
Maintainer: Yang (Seagle) Liu
DESCRIPTION | 17 +++++++----------
MD5 | 2 +-
2 files changed, 8 insertions(+), 11 deletions(-)
Title: Univariate Stratification of Survey Populations
Diff between stratification versions 2.2-3 dated 2012-11-13 and 2.2-4 dated 2014-12-03
More information about stratification at CRAN
Description: Univariate stratification of survey populations with a generalization of the
Lavallee-Hidiroglou method of stratum construction. The generalized method takes into account
a discrepancy between the stratification variable and the survey variable. The determination
of the optimal boundaries also incorporate, if desired, an anticipated non-response, a take-all
stratum for large units, a take-none stratum for small units, and a certainty stratum to ensure
that some specific units are in the sample. The well known cumulative root frequency rule of
Dalenius and Hodges and the geometric rule of Gunning and Horgan are also implemented.
Author: Sophie Baillargeon and Louis-Paul Rivest
Maintainer: Louis-Paul Rivest
DESCRIPTION | 33 ++++++++++++++-------------------
MD5 | 9 +++++----
NEWS | 5 +++++
build |only
man/strata.LH.Rd | 28 ++++++++++++++--------------
src/Ccode.c | 1 -
6 files changed, 38 insertions(+), 38 deletions(-)
Permanent link
More information about sensitivityPStrat at CRAN
Permanent link
Title: R Interface For OAuth
Diff between ROAuth versions 0.9.3 dated 2013-04-26 and 0.9.5 dated 2014-12-03
Description: Provides an interface to the OAuth 1.0 specification
allowing users to authenticate via OAuth to the
server of their choice.
Author: Jeff Gentry
Maintainer: Jeff Gentry
DESCRIPTION | 16 ++++++++--------
MD5 | 8 ++++----
NAMESPACE | 3 ++-
R/ROauth.R | 5 ++++-
man/OAuth-class.Rd | 10 +++++++---
5 files changed, 25 insertions(+), 17 deletions(-)
Title: Random Uniform Forests for Classification, Regression and
Unsupervised Learning
Diff between randomUniformForest versions 1.1.0 dated 2014-11-10 and 1.1.1 dated 2014-12-03
More information about randomUniformForest at CRAN
Description: Ensemble model, for classification, regression
and unsupervised learning, based on a forest of unpruned
and randomized binary decision trees. Each tree is grown
by sampling, with replacement, a set of variables at each node.
Each cut-point is generated randomly, according to the continuous
Uniform distribution. For each tree, data are either bootstrapped
or subsampled. The unsupervised mode introduces clustering, dimension reduction
and variable importance, using a three-layer engine. Random Uniform Forests are mainly
aimed to lower correlation between trees (or trees residuals), to provide a deep analysis
of variable importance and to allow native distributed and incremental learning.
Author: Saip Ciss
Maintainer: Saip Ciss
DESCRIPTION | 19
MD5 | 29 -
NEWS | 35 +
R/DecisionTreesCPP.R | 200 +++++----
R/OnliningRandomUniformForests.R | 28 -
R/RandomUniformForestsCPP.R | 646 +++++++++++++++++---------------
R/genericFunctions.R | 112 ++++-
man/bCI.Rd | 140 +++++-
man/clusteringObservations.Rd | 8
man/fillNA2.randomUniformForest.Rd | 14
man/generic.cv.Rd | 7
man/modifyClusters.Rd | 9
man/randomUniformForest-package.Rd | 8
man/randomUniformForest.Rd | 135 ++++--
man/reSMOTE.Rd |only
man/unsupervised.randomUniformForest.Rd | 105 +++--
16 files changed, 933 insertions(+), 562 deletions(-)
Permanent link
Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Diff between MasterBayes versions 2.51 dated 2014-03-20 and 2.52 dated 2014-12-03
Description: The primary aim of MasterBayes is to use MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic data. Emphasis is put on the marginal distribution of parameters that relate the phenotypic data to the pedigree. All simulation is done in compiled C++ for efficiency.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
build/vignette.rds |binary
src/MCMCped.cc | 7 ++++---
4 files changed, 11 insertions(+), 10 deletions(-)
Title: Handy Functions for Working With HGNC Gene Symbols and
Affymetrix Probeset Identifiers.
Diff between HGNChelper versions 0.3.0 dated 2014-03-21 and 0.3.1 dated 2014-12-03
Description: Contains functions for
identifying and correcting HGNC gene symbols which have been converted
to date format by Excel, for reversibly converting between HGNC
symbols and valid R names, identifying invalid HGNC symbols and
correcting synonyms and outdated symbols which can be mapped to an
official symbol.
Author: Levi Waldron and Markus Riester
Maintainer: Levi Waldron
checkGeneSymbols.R | 18 +++++-----
tmp/cranberry753b26ac8829/HGNChelper-0.3.1/HGNChelper/CHANGELOG | 6 +++
tmp/cranberry753b26ac8829/HGNChelper-0.3.1/HGNChelper/DESCRIPTION | 12 +++---
tmp/cranberry753b26ac8829/HGNChelper-0.3.1/HGNChelper/MD5 | 15 ++++----
tmp/cranberry753b26ac8829/HGNChelper-0.3.1/HGNChelper/R/checkGeneSymbols.R | 11 ++++--
tmp/cranberry753b26ac8829/HGNChelper-0.3.1/HGNChelper/build/HGNChelper.pdf |binary
tmp/cranberry753b26ac8829/HGNChelper-0.3.1/HGNChelper/data/hgnc.table.rda |binary
tmp/cranberry753b26ac8829/HGNChelper-0.3.1/HGNChelper/inst/extdata/genenames_org.rda |binary
tmp/cranberry753b26ac8829/HGNChelper-0.3.1/HGNChelper/inst/extdata/valid_vs_year.R |only
9 files changed, 37 insertions(+), 25 deletions(-)
Title: Testing Goodness-of-fit with the Kernel Density Estimator
Diff between GoFKernel versions 2.0-4 dated 2014-08-26 and 2.0-5 dated 2014-12-03
Description: Tests of goodness-of-fit based on kernel smoothing of the data
Author: Jose M. Pavia
Maintainer: Jose M. Pavia
DESCRIPTION | 11 +++++------
MD5 | 4 ++--
man/GoFKernel-package.Rd | 6 +++---
3 files changed, 10 insertions(+), 11 deletions(-)
Title: Fit Generalized Estimating Equations
Diff between geeM versions 0.7.1 dated 2014-04-26 and 0.7.2 dated 2014-12-03
Description: Allows generalized estimating equation fits with user-specified link and variance functions.
Author: Lee S. McDaniel and Nick Henderson
Maintainer: Lee S. McDaniel
DESCRIPTION | 12
MD5 | 6
R/geem.R | 922 ++++++++++++++++++++++++++++++------------------------------
R/print.R | 112 +++----
4 files changed, 526 insertions(+), 526 deletions(-)
Title: Analysis of ontologies and protein domain annotations
Diff between dcGOR versions 1.0.3 dated 2014-09-25 and 1.0.4 dated 2014-12-03
Description: The package is used to analyse domain-centric ontologies and annotations, particularly those in the dcGO database. The dcGO (http://supfam.org/SUPERFAMILY/dcGO) is a comprehensive domain-centric database for annotating protein domains using a panel of ontologies including Gene Ontology. With the package, users are expected to analyse and visualise domain-centric ontologies and annotations. Supported analyses include but are not limited to: easy access to a wide range of ontologies and their domain-centric annotations; able to build customised ontologies and annotations; domain-based enrichment analysis and visualisation; construction of a domain (semantic similarity) network according to ontology annotations; significance analysis for estimating a contact (statistical significance) network via Random Walk with Restart; and high-performance parallel computing. The under-development functionalities are: 1) to create domain-centric ontologies; 2) to predict ontology terms for input protein sequences, precisely domain content in the form of architectures; 3) to reconstruct ancestral discrete characters using maximum likelihood/parsimony.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang
DESCRIPTION | 24 ++++---
MD5 | 116 +++++++++++++++++++++--------------
NAMESPACE | 17 ++++-
R/ClassMethod-dcGOR.r | 7 +-
R/dcAlgo.r |only
R/dcAlgoPredict.r |only
R/dcAlgoPredictGenome.r |only
R/dcAlgoPredictMain.r |only
R/dcAlgoPropagate.r |only
R/dcAncestralML.r |only
R/dcAncestralMP.r |only
R/dcBuildAnno.r | 10 +--
R/dcBuildInfoDataFrame.r | 6 -
R/dcBuildOnto.r | 6 -
R/dcDAGdomainSim.r | 6 -
R/dcDuplicated.r |only
R/dcEnrichment.r | 16 ++--
R/dcFunArgs.r |only
R/dcRDataLoader.r | 17 +++--
R/dcSparseMatrix.r |only
R/dcSplitArch.r |only
R/dcSubtreeClade.r |only
R/dcSubtreeTips.r |only
R/dcTreeConnectivity.r |only
inst/CITATION | 12 +--
inst/NEWS | 14 ++++
inst/staticdocs/CITATIONs.md | 4 -
inst/staticdocs/INSTALLATIONs.md | 20 +++---
inst/staticdocs/README.md | 7 ++
inst/staticdocs/demo/Basu.r | 28 ++------
inst/staticdocs/demo/Customisation.r | 12 +--
inst/staticdocs/demo/Fang.r | 2
inst/staticdocs/docs.r | 40 +++++++++++-
man/AdjData-class.Rd | 2
man/Anno-class.Rd | 2
man/Anno-method.Rd | 10 +--
man/AnnoData-class.Rd | 2
man/Cnetwork-class.Rd | 2
man/Cnetwork-method.Rd | 10 +--
man/Coutput-class.Rd | 2
man/Coutput-method.Rd | 8 +-
man/Dnetwork-class.Rd | 2
man/Dnetwork-method.Rd | 10 +--
man/Eoutput-class.Rd | 2
man/Eoutput-method.Rd | 2
man/InfoDataFrame-class.Rd | 2
man/InfoDataFrame-method.Rd | 10 +--
man/Onto-class.Rd | 2
man/Onto-method.Rd | 10 +--
man/dcAlgo.Rd |only
man/dcAlgoPredict.Rd |only
man/dcAlgoPredictGenome.Rd |only
man/dcAlgoPredictMain.Rd |only
man/dcAlgoPropagate.Rd |only
man/dcAncestralML.Rd |only
man/dcAncestralMP.Rd |only
man/dcBuildAnno.Rd | 44 +++++++------
man/dcBuildInfoDataFrame.Rd | 13 ++-
man/dcBuildOnto.Rd | 21 +++---
man/dcConverter.Rd | 2
man/dcDAGannotate.Rd | 2
man/dcDAGdomainSim.Rd | 14 ++--
man/dcDuplicated.Rd |only
man/dcEnrichment.Rd | 35 +++++-----
man/dcFunArgs.Rd |only
man/dcRDataLoader.Rd | 29 +++++---
man/dcRWRpipeline.Rd | 2
man/dcSparseMatrix.Rd |only
man/dcSplitArch.Rd |only
man/dcSubtreeClade.Rd |only
man/dcSubtreeTips.Rd |only
man/dcTreeConnectivity.Rd |only
man/visEnrichment.Rd | 2
73 files changed, 360 insertions(+), 246 deletions(-)
Title: Quantifies effects of geo/eco distance on genetic
differentiation
Diff between BEDASSLE versions 1.4 dated 2014-06-10 and 1.5 dated 2014-12-03
Description: provides functions that allow users to quantify the relative
contributions of geographic and ecological distances to empirical patterns of genetic
differentiation on a landscape. Specifically, we use a custom Markov chain
Monte Carlo (MCMC) algorithm, which is used to estimate the parameters of the
inference model, as well as functions for performing MCMC diagnosis and assessing
model adequacy.
Author: Gideon Bradburd
Maintainer: Gideon Bradburd
DESCRIPTION | 22 +++++++++++-----------
MD5 | 4 ++--
man/BEDASSLE-package.Rd | 2 +-
3 files changed, 14 insertions(+), 14 deletions(-)
Title: Infrastructure for seriation
Diff between seriation versions 1.0-13 dated 2014-03-11 and 1.0-14 dated 2014-12-03
Description: Infrastructure for seriation with an implementation of several
seriation/sequencing techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also contains some visualizations techniques
based on seriation.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler
DESCRIPTION | 10 +++++-----
MD5 | 27 ++++++++++++++-------------
build/vignette.rds |binary
data/Irish.rda |binary
data/Munsingen.rda |binary
data/Psych24.rda |binary
data/Townships.rda |binary
data/Zoo.rda |binary
inst/NEWS | 8 +++++++-
inst/doc/seriation.pdf |binary
man/dissplot.Rd | 2 +-
src/RNG_wrapper.c |only
src/arsa.f | 37 +++++++++++++++++++++++++++----------
src/bburcg.f | 14 +++++++++++---
src/bbwrcg.f | 11 +++++++++--
15 files changed, 74 insertions(+), 35 deletions(-)
More information about panelaggregation at CRAN
Permanent link
Title: Nonparametric Methods for Cognitive Diagnosis
Diff between NPCD versions 1.0-6 dated 2014-05-02 and 1.0-7 dated 2014-12-03
Description: An array of nonparametric and parametric estimation methods for cognitive diagnostic models, including nonparametric classification of examinee attribute profiles, joint maximum likelihood estimation (JMLE) of examinee attribute profiles and item parameters, and nonparametric refinement of the Q-matrix, as well as conditional maximum likelihood estimation (CMLE) of examinee attribute profiles given item parameters and CMLE of item parameters given examinee attribute profiles. Currently the nonparametric methods in the package support both conjunctive and disjunctive models, and the parametric methods in the package support the DINA model, the DINO model, the NIDA model, the G-NIDA model, and the R-RUM model.
Author: Yi Zheng [aut, cre],
Chia-Yi Chiu [aut],
Jeffrey A. Douglas [ctb]
Maintainer: Yi Zheng
DESCRIPTION | 14 +++++++-------
MD5 | 4 ++--
man/NPCD.Rd | 8 ++++----
3 files changed, 13 insertions(+), 13 deletions(-)
Title: Predict Gender from Names Using Historical Data
Diff between gender versions 0.4.1 dated 2014-09-29 and 0.4.2 dated 2014-12-03
Description: Encodes gender based on names and dates of birth, using either the
Social Security Administration's data set of first names by year of birth
or the Census Bureau data from 1789 to 1940, both from the United States of
America. By using these data sets instead of lists of male and female names,
this package is able to more accurately guess the gender of a name, and it
is able to report the probability that a name was male or female.
Author: Lincoln Mullen [aut, cre],
Cameron Blevins [ctb],
Ben Schmidt [ctb]
Maintainer: Lincoln Mullen
DESCRIPTION | 10 +++++-----
MD5 | 16 ++++++++--------
NEWS | 14 ++++++++++----
R/gender-kantrowitz.R | 5 ++++-
README.md | 21 +++++++++++++++------
build/vignette.rds |binary
tests/testthat/test-ipums.r | 4 ++++
tests/testthat/test-kantrowitz.r | 4 ++++
tests/testthat/test-ssa.r | 4 ++++
9 files changed, 54 insertions(+), 24 deletions(-)
Title: Wilcox Robust Estimation and Testing.
Diff between WRS2 versions 0.2-0 dated 2014-10-24 and 0.3-1 dated 2014-12-03
Description: A user-friendly version of Wilcox' robust statistics functions (WRS package on GitHub). It implements robust tests for various ANOVA and ANCOVA techniques as described in R. Wilcox (2012) 'Introduction to Robust Estimation and Hypothesis Testing'.
Author: Patrick Mair [cre, aut],
Felix Schoenbrodt [aut],
Rand Wilcox [aut]
Maintainer: Patrick Mair
DESCRIPTION | 12 +-
MD5 | 103 +++++++++++++++++++-----
NAMESPACE | 19 ++++
R/apgdis.R |only
R/con2way.R |only
R/covmve.R |only
R/depth.R |only
R/depths1.R |only
R/dmean.R |only
R/fdepth.R |only
R/fdepthv2.R |only
R/gkcov.R |only
R/gvar.R |only
R/hard.rejection.R |only
R/hpsi.R |only
R/lincon.R | 218 +++++++++++++++++++++++++--------------------------
R/lincon1.R |only
R/linconb.R | 2
R/lloc.R |only
R/mcp2a.R |only
R/mcp2atm.R |only
R/mcppb20.R |only
R/med1way.R | 6 -
R/mgvar.R |only
R/model.matrix.mcp.R |only
R/mom.R |only
R/near3d.R |only
R/ogk.R |only
R/ogk.pairwise.R |only
R/onestep.R |only
R/out.R |only
R/outbox.R |only
R/outmgv.R |only
R/outogk.R |only
R/outpro.R |only
R/pairdepb.R |only
R/pb2gen.R |only
R/pbad2way.R |only
R/pdis.R |only
R/print.mcp.R |only
R/print.mcp1.R |only
R/print.spp.R |only
R/print.t2way.R | 7 +
R/print.yuen.R |only
R/push.R |only
R/rmanogsub.R |only
R/rmanova.R | 2
R/rmanovab.R | 4
R/rmba.R |only
R/rmdzero.R |only
R/rmmcp.R |only
R/smean.R |only
R/spat.R |only
R/spat.sub.R |only
R/sppba.R |only
R/sppbb.R |only
R/sppbi.R |only
R/standm.R |only
R/t1waybt.R | 4
R/taulc.R |only
R/tauloc.R |only
R/tauvar.R |only
R/tmean.R |only
R/trimci.R |only
R/trimse.R |only
R/tsplit.R | 40 ++++-----
R/tsub.R |only
R/unidepth.R |only
R/yuen.R |only
R/yuenbt.R |only
R/yuend.R |only
data/bush.rda |only
data/spider.rda |only
inst/NEWS.Rd | 43 ++++++----
man/WRS2-package.Rd | 6 -
man/bush.Rd |only
man/med1way.Rd | 8 -
man/rmanova.Rd | 25 +++++
man/rmanovab.Rd | 20 +++-
man/spider.Rd |only
man/t1way.Rd | 18 +++-
man/t1waybt.Rd | 18 +++-
man/t2way.Rd | 47 ++++++++++
man/tsplit.Rd | 47 ++++++++++
man/yuen.Rd |only
85 files changed, 438 insertions(+), 211 deletions(-)
Title: Stochastic Multi-criteria Acceptability Analysis
Diff between smaa versions 0.2-2 dated 2013-12-02 and 0.2-3 dated 2014-12-03
Description: The Stochastic Multi-criteria Acceptability Analysis (SMAA) family of Multiple Criteria Decision Analysis (MCDA) methods.
Author: Gert van Valkenhoef
Maintainer: Gert van Valkenhoef
DESCRIPTION | 10 +--
MD5 | 14 ++--
NEWS | 13 ++++
R/smaa.R | 27 ++-------
src/entropyRanking.c | 41 ++++++++++----
src/pvf.c | 43 ++++++++++-----
src/smaa.c | 144 +++++++++++++++++++++++++++++++++++----------------
tests/rankEntropy.R | 5 -
8 files changed, 191 insertions(+), 106 deletions(-)
Title: Analysis of Subjective Perspectives Using Q Methodology
Diff between qmethod versions 1.2.2 dated 2014-10-28 and 1.2.4 dated 2014-12-03
Description: Analysis of Q methodology data to identify the distinct perspectives existing within a group. This methodology is used across social, health and environmental sciences to understand diversity of attitudes, discourses, or decision-making styles (for more information, see http://qmethod.org). The function qmethod() runs the full analysis. Each step can be run separately using the corresponding functions: qflag() for automatic flagging of Q-sorts (manual flagging is optional), qzscores() for scores for statements, qda() for distinguishing and consensus statements, and qfcharact() for general characteristics of the factors. Additional functions import data from PQMethod software, export plain text data for interpretation in two flavours, print and plot Q method results in a synthetic manner. The package uses principal components and it offers the following choices: manual or automatic flagging, a number of mathematical methods for rotation, and a number of correlation coefficients for the initial correlation matrix.
Author: Aiora Zabala [aut, cre]
Maintainer: Aiora Zabala
qmethod-1.2.2/qmethod/man/QmethodRes-class.Rd |only
qmethod-1.2.4/qmethod/DESCRIPTION | 10 -
qmethod-1.2.4/qmethod/MD5 | 15 --
qmethod-1.2.4/qmethod/R/export.qm.R | 195 +++++++++++++-------------
qmethod-1.2.4/qmethod/R/plot.QmethodRes.R | 2
qmethod-1.2.4/qmethod/R/qmethod.R | 4
qmethod-1.2.4/qmethod/man/export.qm.Rd | 2
qmethod-1.2.4/qmethod/man/plot.QmethodRes.Rd | 2
qmethod-1.2.4/qmethod/man/qmethod.Rd | 7
9 files changed, 119 insertions(+), 118 deletions(-)
Title: threshold regression and unit root test in panel data
Diff between pdR versions 1.1 dated 2014-09-01 and 1.2 dated 2014-12-03
Description: Panel threshold and IGF unit root test
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu
DESCRIPTION | 13 +++++++------
MD5 | 15 ++++++++++++---
R/unitRoot.R |only
data |only
man/IGF.Rd |only
man/inf19.Rd |only
man/invest.Rd |only
man/lagSelect.Rd |only
man/pIGF.Rd |only
man/pdR-package.Rd | 35 +++++++++++++++++++++--------------
man/ptm.Rd | 44 ++++++++++++++++++++------------------------
man/tbar.Rd |only
12 files changed, 60 insertions(+), 47 deletions(-)
Title: Exploration and Graphics for RivEr Trends (EGRET)
Diff between EGRET versions 2.0.1 dated 2014-11-24 and 2.0.2 dated 2014-12-03
Description: Statistics and graphics for streamflow history,
water quality trends, and the statistical modeling algorithm: Weighted
Regressions on Time, Discharge, and Season (WRTDS).
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre]
Maintainer: Laura DeCicco
DESCRIPTION | 15 +--
MD5 | 134 +++++++++++++--------------
NEWS | 6 +
R/EGRET.R | 2
R/blankTime.R | 2
R/estDailyFromSurfacesJ.R | 6 -
R/mergeReport.r | 13 +-
R/populateDaily.r | 21 +++-
R/printSeries.R | 10 +-
R/processQWData.r | 4
R/readDataFromFile.r | 47 +++++----
R/readMetaData.r | 27 +++--
R/readNWISDaily.r | 41 ++++++--
R/readNWISSample.r | 26 ++++-
R/readUserDaily.r | 19 +++
R/readUserSample.r | 17 +++
R/readWQPSample.R | 27 ++++-
R/removeDuplicates.r | 19 +++
README.md | 3
build/vignette.rds |binary
man/EGRET-package.Rd | 2
man/blankTime.Rd | 2
man/mergeReport.Rd | 9 +
man/populateDaily.Rd | 19 +++
man/printSeries.Rd | 8 +
man/readNWISDaily.Rd | 21 +++-
man/readNWISSample.Rd | 24 ++++
man/readUserDaily.Rd | 17 +++
man/readUserSample.Rd | 17 +++
man/readWQPSample.Rd | 20 +++-
man/removeDuplicates.Rd | 19 +++
vignettes/figure/Mercedplot-1.pdf |binary
vignettes/figure/Mercedplot-2.pdf |binary
vignettes/figure/MississippiPlot-1.pdf |binary
vignettes/figure/adjustSize-1.pdf |binary
vignettes/figure/adjustSize-2.pdf |binary
vignettes/figure/boxConcThree-1.pdf |binary
vignettes/figure/boxResidMonth-1.pdf |binary
vignettes/figure/boxResidMonth-2.pdf |binary
vignettes/figure/customPanel-1.pdf |binary
vignettes/figure/easyFontChange-1.pdf |binary
vignettes/figure/fluxBiasMulti-1.pdf |binary
vignettes/figure/modifiedContour1-1.pdf |binary
vignettes/figure/modifiedDiffContour-1.pdf |binary
vignettes/figure/multiPlotDataOverview-1.pdf |binary
vignettes/figure/plotBoxes-1.pdf |binary
vignettes/figure/plotBoxes-2.pdf |binary
vignettes/figure/plotConcQComparison-1.pdf |binary
vignettes/figure/plotConcQComparison-2.pdf |binary
vignettes/figure/plotConcQSmooth-1.pdf |binary
vignettes/figure/plotConcQSmooth-2.pdf |binary
vignettes/figure/plotConcTime-1.pdf |binary
vignettes/figure/plotConcTime-2.pdf |binary
vignettes/figure/plotConcTimeDaily-1.pdf |binary
vignettes/figure/plotConcTimeDaily-2.pdf |binary
vignettes/figure/plotConcTimeSmooth-1.pdf |binary
vignettes/figure/plotConcTimeSmooth-2.pdf |binary
vignettes/figure/plotContours-1.pdf |binary
vignettes/figure/plotDiffContours-1.pdf |binary
vignettes/figure/plotFluxHist-1.pdf |binary
vignettes/figure/plotFluxHist-2.pdf |binary
vignettes/figure/plotFluxPred-1.pdf |binary
vignettes/figure/plotFluxPred-2.pdf |binary
vignettes/figure/plotFluxQ-1.pdf |binary
vignettes/figure/plotFour-1.pdf |binary
vignettes/figure/plotResidQ-1.pdf |binary
vignettes/figure/plotResidQ-2.pdf |binary
vignettes/figure/tinyPlot1-1.pdf |binary
68 files changed, 435 insertions(+), 162 deletions(-)
Title: Bayesian structural time series
Diff between bsts versions 0.5.1 dated 2014-06-27 and 0.6.0 dated 2014-12-03
Description: Time series regression using dynamic linear models fit using MCMC.
Author: Steven L. Scott
Maintainer: Steven L. Scott
DESCRIPTION | 10 -
MD5 | 20 +--
NAMESPACE | 8 -
R/bsts.R | 78 +++++++++++--
R/mixed.frequency.R | 13 +-
man/add.dynamic.regression.Rd | 3
man/bsts.Rd | 39 ++++++
src/Makevars | 1
src/btlm.cc | 251 +++++++++++++++++++++++++++---------------
src/mixed_frequency.cc | 27 +---
src/state_space.cc | 44 +++----
11 files changed, 334 insertions(+), 160 deletions(-)
Title: Generic and Biological Sequences
Diff between sequences versions 0.5.8 dated 2014-04-11 and 0.5.9 dated 2014-12-03
Description: Educational package used in R courses to illustrate
object-oriented programming and package
development. Using biological sequences (DNA and RNA) as
a working example.
Author: Laurent Gatto [aut, cre],
Robert Stojnic [aut]
Maintainer: Laurent Gatto
DESCRIPTION | 18 +++++++------
MD5 | 22 +++++++++-------
NEWS | 13 +++++++++-
R/functions.R | 9 ++++++
build/vignette.rds |binary
inst/doc/sequences.R | 33 ++++++-------------------
inst/doc/sequences.Rnw | 52 +++++++++++++++++++---------------------
inst/doc/sequences.pdf |binary
inst/extdata/moreDnaSeqs.fasta |only
inst/scripts |only
man/readFasta.Rd | 43 +++++++++++++++++++++++----------
tests/testthat/test_sequences.R | 2 -
vignettes/sequences.Rnw | 52 +++++++++++++++++++---------------------
13 files changed, 131 insertions(+), 113 deletions(-)
Title: Evaluation of Diversity in Nucleotide Libraries
Diff between peptider versions 0.1.5 dated 2014-07-28 and 0.1.6 dated 2014-12-03
Description: Functions for evaluating diversity in peptide libraries, including
NNN, NNB, NNK/S, and trimer schemes. This includes expected coverage,
relative efficiency, and functional diversity of the library.
Author: Heike Hofmann, Eric Hare, ggobi Foundation
Maintainer: Eric Hare
DESCRIPTION | 10 ++++----
MD5 | 50 ++++++++++++++++++++++----------------------
NAMESPACE | 2 -
man/BLOSUM80.Rd | 2 -
man/codons.Rd | 2 -
man/coverage.Rd | 2 -
man/detect.Rd | 2 -
man/diversity.Rd | 2 -
man/efficiency.Rd | 2 -
man/encodingReduce.Rd | 2 -
man/genNeighbors.Rd | 2 -
man/genNeighbors_reduced.Rd | 2 -
man/generateCustom.Rd | 2 -
man/generateCustomLib.Rd | 2 -
man/generateCustomNei.Rd | 2 -
man/generateCustomProbs.Rd | 2 -
man/getChoices.Rd | 2 -
man/getCounts.Rd | 2 -
man/getNeighbors.Rd | 2 -
man/getNofNeighbors.Rd | 2 -
man/libBuild.Rd | 2 -
man/libscheme.Rd | 2 -
man/makowski.Rd | 2 -
man/ppeptide.Rd | 2 -
man/scheme.Rd | 2 -
man/schemes.Rd | 2 -
26 files changed, 54 insertions(+), 54 deletions(-)
Title: Univariate outlier detection
Diff between extremevalues versions 2.2 dated 2011-01-03 and 2.3.0 dated 2014-12-03
Description: Detect extreme values in onedimensional data
Author: Mark van der Loo
Maintainer: Mark van der Loo
extremevalues-2.2/extremevalues/listOfChanges.txt |only
extremevalues-2.3.0/extremevalues/DESCRIPTION | 9 +++++----
extremevalues-2.3.0/extremevalues/MD5 |only
extremevalues-2.3.0/extremevalues/NAMESPACE | 1 +
extremevalues-2.3.0/extremevalues/NEWS |only
extremevalues-2.3.0/extremevalues/R/evGui.r | 3 ---
extremevalues-2.3.0/extremevalues/man/getOutliers.Rd | 3 ++-
7 files changed, 8 insertions(+), 8 deletions(-)
Title: Functions to Create and Manipulate Discrete Random Variables
Diff between discreteRV versions 1.1.2 dated 2014-07-28 and 1.1.3 dated 2014-12-03
Description: discreteRV implements a set of functions that allow computations
involving discrete random variables. It uses a syntax which is familiar to
that which is used in mathematical statistics and probability courses.
Author: Andreas Buja
Maintainer: Eric Hare
DESCRIPTION | 12 +++++---
MD5 | 60 +++++++++++++++++++++----------------------
NAMESPACE | 3 +-
R/discreteRV-Probabilities.r | 18 +++++++++++-
man/Conditional.Rd | 2 -
man/E.Rd | 2 -
man/KURT.Rd | 2 -
man/P.Rd | 2 -
man/Prop.Rd | 2 -
man/SD.Rd | 2 -
man/SKEW.Rd | 2 -
man/SofI.Rd | 2 -
man/SofIID.Rd | 6 ++--
man/V.Rd | 2 -
man/as.RV.Rd | 2 -
man/grapes-AND-grapes.Rd | 2 -
man/grapes-OR-grapes.Rd | 2 -
man/grapes-in-grapes.Rd | 2 -
man/make.RV.Rd | 2 -
man/margins.Rd | 2 -
man/mult.Rd | 2 -
man/multN.Rd | 2 -
man/outcomes.Rd | 2 -
man/plot.RV.Rd | 2 -
man/plot.RVsim.Rd | 2 -
man/print.RV.Rd | 2 -
man/probs.Rd | 2 -
man/props.Rd | 2 -
man/qqnorm.RV.Rd | 2 -
man/rsim.Rd | 2 -
man/skewSim.Rd | 2 -
31 files changed, 84 insertions(+), 67 deletions(-)
Title: Bayesian analysis of contingency tables
Diff between conting versions 1.3 dated 2014-06-11 and 1.4 dated 2014-12-03
Description: Bayesian analysis of complete and incomplete contingency tables.
Author: Antony M. Overstall
Maintainer: Antony M. Overstall
DESCRIPTION | 10 +++---
MD5 | 70 ++++++++++++++++++++++++------------------------
data/AOH.rda |binary
data/ScotPWID.rda |binary
data/heart.rda |binary
data/spina.rda |binary
man/RJ_update.Rd | 2 -
man/accept_rate.Rd | 2 -
man/add_term.Rd | 2 -
man/bayespval.Rd | 2 -
man/bcct.Rd | 2 -
man/bcct.fit.Rd | 2 -
man/beta_mode.Rd | 2 -
man/bict.Rd | 2 -
man/bict.fit.Rd | 2 -
man/conting-package.Rd | 8 ++---
man/find_cens.Rd | 2 -
man/formula2index.Rd | 2 -
man/index2model.Rd | 2 -
man/inter_probs.Rd | 2 -
man/inter_stats.Rd | 2 -
man/iwls_mh.Rd | 2 -
man/mod_probs.Rd | 2 -
man/plot.pval.Rd | 2 -
man/plot.totpop.Rd | 2 -
man/print.acceptrate.Rd | 2 -
man/print.bcct.Rd | 2 -
man/print.interprob.Rd | 2 -
man/print.interstat.Rd | 2 -
man/print.modprobs.Rd | 2 -
man/print.pval.Rd | 2 -
man/print.submod.Rd | 2 -
man/print.totpop.Rd | 2 -
man/sub_model.Rd | 2 -
man/summary.bcct.Rd | 2 -
man/total_pop.Rd | 2 -
36 files changed, 73 insertions(+), 73 deletions(-)
Title: Robust linear regression with compositional data as covariates
Diff between complmrob versions 0.5.5 dated 2014-08-17 and 0.5.6 dated 2014-12-03
Description: Provides functionality to perform robust regression
on compositional data. To get information on the distribution of the
estimates, various bootstrapping methods are implemented for the
compositional as well as for standard robust regression models, to provide
a direct comparison between them.
Author: David Kepplinger
Maintainer: David Kepplinger
ChangeLog | 5 +++++
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
R/bootcoefs-methods.R | 8 ++++++--
4 files changed, 19 insertions(+), 10 deletions(-)
Title: Sensitivity Analysis
Diff between sensitivity versions 1.10 dated 2014-11-26 and 1.10.1 dated 2014-12-03
Description: A collection of functions for factor screening, global sensitivity analysis and reliability sensitivity analysis of model output.
Author: Gilles Pujol, Bertrand Iooss, Alexandre Janon with contributions from Paul Lemaitre, Laurent Gilquin, Loic Le Gratiet, Taieb Touati, Bernardo Ramos, Jana Fruth and Sebastien Da Veiga
Maintainer: Bertrand Iooss
DESCRIPTION | 6 +--
MD5 | 8 ++---
NAMESPACE | 5 +--
R/base.R | 85 +++++++++++++++++++++++++++++-------------------------
man/sobolTIIpf.Rd | 1
5 files changed, 57 insertions(+), 48 deletions(-)
Title: Seeding the Default RNG with a Numeric Vector
Diff between rngSetSeed versions 0.3-1 dated 2014-12-01 and 0.3-2 dated 2014-12-03
Description: A function setVectorSeed() is provided. Its argument
is a numeric vector of an arbitrary nonzero length, whose
components have integer values from [0, 2^32-1]. The input
vector is transformed using AES (Advanced Encryption Standard)
algorithm into an initial state of Mersenne-Twister random
number generator. The function provides a better alternative
to the R base function set.seed(), if the input vector is
a single integer. Initializing a stream of random numbers
with a vector is a convenient way to obtain several streams,
each of which is identified by several integer indices.
Author: Petr Savicky
Maintainer: Petr Savicky
ChangeLog | 3 +++
DESCRIPTION | 12 ++++++------
MD5 | 14 +++++++-------
R/functions.R | 8 ++++----
man/generateInitialization.Rd | 22 ++++++++++++----------
man/rngSetSeed-package.Rd | 28 +++++++++-------------------
man/setVectorSeed.Rd | 25 ++++++++++++++-----------
src/interface.c | 26 +++++++++++++++++++-------
8 files changed, 74 insertions(+), 64 deletions(-)
Title: Testset for differential equations
Diff between deTestSet versions 1.1.1 dated 2013-07-02 and 1.1.2 dated 2014-12-03
Description: Solvers and testset for stiff and nonstiff differential equations, and
differential algebraic equations
Author: Karline Soetaert [aut, cre],
Jeff Cash [aut],
Francesca Mazzia [aut],
LAPACK authors [cph]
Maintainer: Karline Soetaert
DESCRIPTION | 33 +++++++++++++----------
MD5 | 39 ++++++++++++++-------------
NAMESPACE | 1
R/bimd.R | 19 ++++++++++++-
R/dopri5.R | 20 +++++++++++---
R/dopri853.R | 14 +++++++++
R/functions.R | 14 +++++++--
R/gam.R | 19 ++++++++++++-
R/mebdfi.R | 77 +++++++++++++++++++++++++++++++++++++++++++-----------
build |only
src/Ex_twobit.f | 4 ++
src/bimd.f | 4 ++
src/call_dopri.c | 12 ++++----
src/call_gam.c | 21 +++++++-------
src/call_mebdfi.c | 12 +++-----
src/cashkarp.f | 2 +
src/de.h | 2 -
src/de_utils.c | 2 -
src/dopri6.f | 2 +
src/dopri8.f | 2 +
src/forcings.c | 6 ++--
21 files changed, 216 insertions(+), 89 deletions(-)
Title: MCMC for spike and slab regression
Diff between BoomSpikeSlab versions 0.4.1 dated 2014-06-24 and 0.5.1 dated 2014-12-03
Description: Spike and slab regression a la McCulloch and George (1997).
Author: Steven L. Scott
Maintainer: Steven L. Scott
DESCRIPTION | 8
MD5 | 43 +-
NAMESPACE | 28 -
R/lm.spike.R | 189 ++++++-----
R/logit.spike.R | 450 +++++++++++++++++++++------
R/poisson.spike.R |only
R/spike.slab.prior.R | 152 ++++++---
man/independent.spike.slab.prior.Rd | 15
man/lm.spike.Rd | 31 +
man/logit.spike.Rd | 39 +-
man/make.spike.slab.prior.Rd | 7
man/plot.lm.spike.Rd | 60 ---
man/plot.logit.spike.Rd |only
man/plot.logit.spike.fit.summary.Rd |only
man/plot.logit.spike.residuals.Rd |only
man/plot.marginal.inclusion.probabilities.Rd |only
man/plot.model.size.Rd | 19 -
man/poisson.spike.Rd |only
man/predict.lm.spike.Rd | 31 +
man/spike.slab.prior.base.Rd | 69 ++--
man/summary.logit.spike.Rd | 55 ++-
src/Makevars | 1
src/logit_spike_slab_wrapper.cc | 148 ++++----
src/mlm_spike_slab_wrapper.cc | 27 -
src/poisson_spike_slab_wrapper.cc |only
src/spike_slab_wrapper.cc | 87 ++---
26 files changed, 945 insertions(+), 514 deletions(-)
Title: Bayesian Object Oriented Modeling
Diff between Boom versions 0.1 dated 2014-06-21 and 0.2 dated 2014-12-03
Description: A C++ library for Bayesian modeling, with an emphasis on
Markov chain Monte Carlo. Although boom contains a few R utilities
(mainly plotting functions), its primary purpose is to install the
BOOM C++ library on your system so that other packages can link
against it.
Author: Steven L. Scott is the sole author and creator of the BOOM
project. Some code in the BOOM libraries has been modified from
other open source projects. These include Cephes (obtained from
Netlib, written by Stephen L. Moshier), NEWUOA (M.J.D Powell,
obtained from Powell's web site), and a modified version of the R
math libraries (R core development team). Original copyright
notices have been maintained in all source files. In these cases,
copyright claimed by Steven L. Scott is limited to modifications
made to the original code.
Maintainer: Steve Scott
Boom-0.1/Boom/inst/include/Models/Glm/GlmMvnPrior.hpp |only
Boom-0.1/Boom/inst/include/Models/Glm/PosteriorSamplers/GlmMvnPriorMeanSampler.hpp |only
Boom-0.1/Boom/inst/include/Models/Glm/PosteriorSamplers/GlmMvnSiginvIndSampler.hpp |only
Boom-0.1/Boom/inst/include/Models/Glm/PosteriorSamplers/GlmMvnSiginvSepStratSampler.hpp |only
Boom-0.1/Boom/inst/include/Models/PosteriorSamplers/PostSliceSampler.hpp |only
Boom-0.1/Boom/inst/include/TargetFun/LoglikeSubset.hpp |only
Boom-0.1/Boom/src/Models/Glm/GlmMvnPrior.cpp |only
Boom-0.1/Boom/src/Models/Glm/PosteriorSamplers/GlmMvnPriorMeanSampler.cpp |only
Boom-0.1/Boom/src/Models/Glm/PosteriorSamplers/GlmMvnSiginvIndSampler.cpp |only
Boom-0.1/Boom/src/Models/Glm/PosteriorSamplers/GlmMvnSiginvSepStratSampler.cpp |only
Boom-0.1/Boom/src/Models/PosteriorSamplers/PostSliceSampler.cpp |only
Boom-0.1/Boom/src/TargetFun/Loglike.cpp |only
Boom-0.1/Boom/src/TargetFun/LoglikeSubset.cpp |only
Boom-0.1/Boom/src/cblas |only
Boom-0.2/Boom/DESCRIPTION | 12
Boom-0.2/Boom/MD5 | 671 ++--
Boom-0.2/Boom/R/check.data.R |only
Boom-0.2/Boom/R/external.legend.R | 4
Boom-0.2/Boom/R/generate_factor_data.R |only
Boom-0.2/Boom/R/match_data_frame.R |only
Boom-0.2/Boom/inst/include/LinAlg/Matrix.hpp | 21
Boom-0.2/Boom/inst/include/LinAlg/QR.hpp | 12
Boom-0.2/Boom/inst/include/LinAlg/SWEEP.hpp | 18
Boom-0.2/Boom/inst/include/LinAlg/SpdMatrix.hpp | 42
Boom-0.2/Boom/inst/include/LinAlg/SubMatrix.hpp | 258 +
Boom-0.2/Boom/inst/include/LinAlg/Vector.hpp | 68
Boom-0.2/Boom/inst/include/LinAlg/VectorView.hpp | 44
Boom-0.2/Boom/inst/include/LinAlg/blas.hpp |only
Boom-0.2/Boom/inst/include/Models/Bart/PosteriorSamplers/GaussianBartPosteriorSampler.hpp | 3
Boom-0.2/Boom/inst/include/Models/BetaBinomialModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/BetaModel.hpp | 2
Boom-0.2/Boom/inst/include/Models/BinomialModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/ChisqModel.hpp | 26
Boom-0.2/Boom/inst/include/Models/DirichletModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/EmMixtureComponent.hpp | 2
Boom-0.2/Boom/inst/include/Models/ExponentialModel.hpp | 5
Boom-0.2/Boom/inst/include/Models/FiniteMixtureModel.hpp | 8
Boom-0.2/Boom/inst/include/Models/GammaModel.hpp | 2
Boom-0.2/Boom/inst/include/Models/GaussianModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/GaussianModelGivenSigma.hpp | 2
Boom-0.2/Boom/inst/include/Models/Glm/BinomialLogitModel.hpp | 7
Boom-0.2/Boom/inst/include/Models/Glm/GlmCoefs.hpp | 4
Boom-0.2/Boom/inst/include/Models/Glm/LogisticRegressionModel.hpp | 11
Boom-0.2/Boom/inst/include/Models/Glm/MultinomialLogitModel.hpp | 10
Boom-0.2/Boom/inst/include/Models/Glm/MvReg2.hpp | 4
Boom-0.2/Boom/inst/include/Models/Glm/MvtRegModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/Glm/OrdinalCutpointModel.hpp | 13
Boom-0.2/Boom/inst/include/Models/Glm/PoissonRegressionModel.hpp | 33
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp | 47
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp | 14
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitDataImputer.hpp | 33
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitSamplerTim.hpp | 19
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp | 6
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/BregVsSampler.hpp | 34
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/MLVS.hpp | 13
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/MLVS_data_imputer.hpp | 138 -
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/MultinomialLogitCompleteDataSuf.hpp | 15
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/NormalMixtureApproximation.hpp | 1
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/PartRegSampler.hpp | 12
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.hpp | 102
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.hpp |only
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/RegressionConjSampler.hpp | 6
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/SpikeSlabDaRegressionSampler.hpp | 156 -
Boom-0.2/Boom/inst/include/Models/Glm/PosteriorSamplers/SpikeSlabSampler.hpp |only
Boom-0.2/Boom/inst/include/Models/Glm/ProbitRegression.hpp | 23
Boom-0.2/Boom/inst/include/Models/Glm/RegressionModel.hpp | 60
Boom-0.2/Boom/inst/include/Models/Glm/TRegression.hpp | 7
Boom-0.2/Boom/inst/include/Models/Glm/VariableSelectionPrior.hpp | 5
Boom-0.2/Boom/inst/include/Models/Glm/WeightedRegressionModel.hpp | 6
Boom-0.2/Boom/inst/include/Models/HMM/HMM2.hpp | 5
Boom-0.2/Boom/inst/include/Models/HMM/HealthStateModel.hpp | 5
Boom-0.2/Boom/inst/include/Models/IRT/IrtModel.hpp | 1
Boom-0.2/Boom/inst/include/Models/IRT/Item.hpp | 5
Boom-0.2/Boom/inst/include/Models/IndependentMvnModel.hpp | 2
Boom-0.2/Boom/inst/include/Models/IndependentMvnModelGivenScalarSigma.hpp | 10
Boom-0.2/Boom/inst/include/Models/MarkovModel.hpp | 6
Boom-0.2/Boom/inst/include/Models/Mixtures/ConditionalFiniteMixtureModel.hpp | 2
Boom-0.2/Boom/inst/include/Models/ModelTypes.hpp | 40
Boom-0.2/Boom/inst/include/Models/MultinomialModel.hpp | 2
Boom-0.2/Boom/inst/include/Models/MvnBase.hpp | 41
Boom-0.2/Boom/inst/include/Models/MvnGivenScalarSigma.hpp | 21
Boom-0.2/Boom/inst/include/Models/MvnGivenSigma.hpp | 4
Boom-0.2/Boom/inst/include/Models/MvnModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/MvtModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/PointProcess/HomogeneousPoissonProcess.hpp | 2
Boom-0.2/Boom/inst/include/Models/PointProcess/WeeklyCyclePoissonProcess.hpp | 19
Boom-0.2/Boom/inst/include/Models/PoissonGammaModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/PoissonModel.hpp | 5
Boom-0.2/Boom/inst/include/Models/PosteriorSamplers/GaussianConjSampler.hpp | 2
Boom-0.2/Boom/inst/include/Models/PosteriorSamplers/GaussianVarSampler.hpp | 3
Boom-0.2/Boom/inst/include/Models/PosteriorSamplers/GenericGaussianVarianceSampler.hpp |only
Boom-0.2/Boom/inst/include/Models/PosteriorSamplers/Imputer.hpp | 311 ++
Boom-0.2/Boom/inst/include/Models/PosteriorSamplers/IndependentMvnConjSampler.hpp | 5
Boom-0.2/Boom/inst/include/Models/PosteriorSamplers/MvnIndependentVarianceSampler.hpp | 5
Boom-0.2/Boom/inst/include/Models/PosteriorSamplers/SharedSigsqSampler.hpp | 2
Boom-0.2/Boom/inst/include/Models/PosteriorSamplers/ZeroMeanMvnIndependenceSampler.hpp | 5
Boom-0.2/Boom/inst/include/Models/ProductDirichletModel.hpp | 6
Boom-0.2/Boom/inst/include/Models/ScaledChisqModel.hpp | 9
Boom-0.2/Boom/inst/include/Models/StateSpace/PosteriorSamplers/DynamicRegressionPosteriorSampler.hpp | 3
Boom-0.2/Boom/inst/include/Models/StateSpace/PosteriorSamplers/StudentLocalLinearTrendPosteriorSampler.hpp | 5
Boom-0.2/Boom/inst/include/Models/TimeSeries/PosteriorSamplers/ArPosteriorSampler.hpp | 6
Boom-0.2/Boom/inst/include/Models/TimeSeries/PosteriorSamplers/NonzeroMeanAr1Sampler.hpp | 3
Boom-0.2/Boom/inst/include/Models/TimeSeries/TimeSeries.hpp | 227 -
Boom-0.2/Boom/inst/include/Models/TimeSeries/TimeSeriesDataPolicy.hpp | 9
Boom-0.2/Boom/inst/include/Models/UniformModel.hpp | 2
Boom-0.2/Boom/inst/include/Models/WeightedMvnModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/WishartModel.hpp | 10
Boom-0.2/Boom/inst/include/Models/ZeroInflatedPoissonModel.hpp | 6
Boom-0.2/Boom/inst/include/Models/ZeroMeanGaussianModel.hpp | 3
Boom-0.2/Boom/inst/include/Models/ZeroMeanMvnModel.hpp | 2
Boom-0.2/Boom/inst/include/Samplers/TIM.hpp | 26
Boom-0.2/Boom/inst/include/TargetFun/LogPost.hpp | 1
Boom-0.2/Boom/inst/include/TargetFun/Loglike.hpp | 31
Boom-0.2/Boom/inst/include/TargetFun/TargetFun.hpp | 56
Boom-0.2/Boom/inst/include/cpputil/make_unique_preserve_order.hpp |only
Boom-0.2/Boom/inst/include/numopt.hpp | 236 -
Boom-0.2/Boom/inst/include/numopt/initialize_derivatives.hpp |only
Boom-0.2/Boom/inst/include/r_interface/boom_r_tools.hpp | 28
Boom-0.2/Boom/inst/include/r_interface/parse_model_formula.hpp |only
Boom-0.2/Boom/inst/include/r_interface/prior_specification.hpp | 163 +
Boom-0.2/Boom/inst/include/stats/DataTable.hpp | 19
Boom-0.2/Boom/inst/include/stats/Design.hpp | 853 +++++-
Boom-0.2/Boom/man/check.data.Rd |only
Boom-0.2/Boom/man/generate_factor_data.Rd |only
Boom-0.2/Boom/man/match_data_frame.Rd |only
Boom-0.2/Boom/src/Bmath/Bmath.hpp | 298 +-
Boom-0.2/Boom/src/Bmath/bd0.cpp | 46
Boom-0.2/Boom/src/Bmath/beta.cpp | 22
Boom-0.2/Boom/src/Bmath/chebyshev.cpp | 20
Boom-0.2/Boom/src/Bmath/choose.cpp | 28
Boom-0.2/Boom/src/Bmath/d1mach.cpp | 10
Boom-0.2/Boom/src/Bmath/dbeta.cpp | 54
Boom-0.2/Boom/src/Bmath/dbinom.cpp | 12
Boom-0.2/Boom/src/Bmath/dcauchy.cpp | 6
Boom-0.2/Boom/src/Bmath/dexp.cpp | 8
Boom-0.2/Boom/src/Bmath/df.cpp | 12
Boom-0.2/Boom/src/Bmath/dgamma.cpp | 14
Boom-0.2/Boom/src/Bmath/dgeom.cpp | 2
Boom-0.2/Boom/src/Bmath/dhyper.cpp | 4
Boom-0.2/Boom/src/Bmath/dlnorm.cpp | 6
Boom-0.2/Boom/src/Bmath/dlogis.cpp | 4
Boom-0.2/Boom/src/Bmath/dnbeta.cpp | 40
Boom-0.2/Boom/src/Bmath/dnbinom.cpp | 2
Boom-0.2/Boom/src/Bmath/dnchisq.cpp | 32
Boom-0.2/Boom/src/Bmath/dnorm.cpp | 12
Boom-0.2/Boom/src/Bmath/dpois.cpp | 2
Boom-0.2/Boom/src/Bmath/dpq.hpp | 84
Boom-0.2/Boom/src/Bmath/dt.cpp | 12
Boom-0.2/Boom/src/Bmath/dunif.cpp | 4
Boom-0.2/Boom/src/Bmath/dweibull.cpp | 6
Boom-0.2/Boom/src/Bmath/fprec.cpp | 54
Boom-0.2/Boom/src/Bmath/fround.cpp | 39
Boom-0.2/Boom/src/Bmath/fsign.cpp | 2
Boom-0.2/Boom/src/Bmath/ftrunc.cpp | 4
Boom-0.2/Boom/src/Bmath/gamma_cody.cpp | 148 -
Boom-0.2/Boom/src/Bmath/gammalims.cpp | 34
Boom-0.2/Boom/src/Bmath/lbeta.cpp | 28
Boom-0.2/Boom/src/Bmath/lgammacor.cpp | 54
Boom-0.2/Boom/src/Bmath/mlutils.cpp | 68
Boom-0.2/Boom/src/Bmath/nmath.hpp | 30
Boom-0.2/Boom/src/Bmath/pbeta.cpp | 16
Boom-0.2/Boom/src/Bmath/pbinom.cpp | 2
Boom-0.2/Boom/src/Bmath/pcauchy.cpp | 10
Boom-0.2/Boom/src/Bmath/pchisq.cpp | 4
Boom-0.2/Boom/src/Bmath/pexp.cpp | 14
Boom-0.2/Boom/src/Bmath/pf.cpp | 10
Boom-0.2/Boom/src/Bmath/pgamma.cpp | 146 -
Boom-0.2/Boom/src/Bmath/pgeom.cpp | 4
Boom-0.2/Boom/src/Bmath/phyper.cpp | 68
Boom-0.2/Boom/src/Bmath/plnorm.cpp | 4
Boom-0.2/Boom/src/Bmath/plogis.cpp | 16
Boom-0.2/Boom/src/Bmath/pnbeta.cpp | 40
Boom-0.2/Boom/src/Bmath/pnbinom.cpp | 10
Boom-0.2/Boom/src/Bmath/pnchisq.cpp | 84
Boom-0.2/Boom/src/Bmath/pnf.cpp | 12
Boom-0.2/Boom/src/Bmath/pnorm.cpp | 282 +-
Boom-0.2/Boom/src/Bmath/pnt.cpp | 110
Boom-0.2/Boom/src/Bmath/polygamma.cpp | 476 +--
Boom-0.2/Boom/src/Bmath/ppois.cpp | 8
Boom-0.2/Boom/src/Bmath/pt.cpp | 30
Boom-0.2/Boom/src/Bmath/ptukey.cpp | 396 +-
Boom-0.2/Boom/src/Bmath/punif.cpp | 6
Boom-0.2/Boom/src/Bmath/pweibull.cpp | 12
Boom-0.2/Boom/src/Bmath/qbeta.cpp | 110
Boom-0.2/Boom/src/Bmath/qbinom.cpp | 52
Boom-0.2/Boom/src/Bmath/qcauchy.cpp | 8
Boom-0.2/Boom/src/Bmath/qchisq.cpp | 2
Boom-0.2/Boom/src/Bmath/qexp.cpp | 4
Boom-0.2/Boom/src/Bmath/qf.cpp | 8
Boom-0.2/Boom/src/Bmath/qgamma.cpp | 116
Boom-0.2/Boom/src/Bmath/qgeom.cpp | 2
Boom-0.2/Boom/src/Bmath/qhyper.cpp | 24
Boom-0.2/Boom/src/Bmath/qlnorm.cpp | 6
Boom-0.2/Boom/src/Bmath/qlogis.cpp | 16
Boom-0.2/Boom/src/Bmath/qnbinom.cpp | 52
Boom-0.2/Boom/src/Bmath/qnchisq.cpp | 22
Boom-0.2/Boom/src/Bmath/qnorm.cpp | 130
Boom-0.2/Boom/src/Bmath/qpois.cpp | 48
Boom-0.2/Boom/src/Bmath/qt.cpp | 138 -
Boom-0.2/Boom/src/Bmath/qtukey.cpp | 98
Boom-0.2/Boom/src/Bmath/qunif.cpp | 2
Boom-0.2/Boom/src/Bmath/qweibull.cpp | 2
Boom-0.2/Boom/src/Bmath/rbeta.cpp | 16
Boom-0.2/Boom/src/Bmath/rbinom.cpp | 86
Boom-0.2/Boom/src/Bmath/rexp.cpp | 2
Boom-0.2/Boom/src/Bmath/rf.cpp | 2
Boom-0.2/Boom/src/Bmath/rgamma.cpp | 30
Boom-0.2/Boom/src/Bmath/rhyper.cpp | 394 +-
Boom-0.2/Boom/src/Bmath/rlnorm.cpp | 2
Boom-0.2/Boom/src/Bmath/rlogis.cpp | 2
Boom-0.2/Boom/src/Bmath/rmultinom.cpp | 18
Boom-0.2/Boom/src/Bmath/rnbinom.cpp | 4
Boom-0.2/Boom/src/Bmath/rnchisq.cpp | 18
Boom-0.2/Boom/src/Bmath/rpois.cpp | 290 +-
Boom-0.2/Boom/src/Bmath/rt.cpp | 10
Boom-0.2/Boom/src/Bmath/runif.cpp | 6
Boom-0.2/Boom/src/Bmath/rweibull.cpp | 4
Boom-0.2/Boom/src/Bmath/sexp.cpp | 50
Boom-0.2/Boom/src/Bmath/sign.cpp | 8
Boom-0.2/Boom/src/Bmath/signrank.cpp | 114
Boom-0.2/Boom/src/Bmath/snorm.cpp | 426 +--
Boom-0.2/Boom/src/Bmath/stirlerr.cpp | 70
Boom-0.2/Boom/src/Bmath/toms708.cpp | 1346 +++++-----
Boom-0.2/Boom/src/Bmath/wilcox.cpp | 174 -
Boom-0.2/Boom/src/Interfaces |only
Boom-0.2/Boom/src/LinAlg/DiagonalMatrix.cpp | 55
Boom-0.2/Boom/src/LinAlg/Givens.cpp | 50
Boom-0.2/Boom/src/LinAlg/Matrix.cpp | 326 +-
Boom-0.2/Boom/src/LinAlg/QR.cpp | 78
Boom-0.2/Boom/src/LinAlg/SpdMatrix.cpp | 271 +-
Boom-0.2/Boom/src/LinAlg/SubMatrix.cpp | 36
Boom-0.2/Boom/src/LinAlg/Vector.cpp | 1283 +++++----
Boom-0.2/Boom/src/LinAlg/VectorView.cpp | 162 -
Boom-0.2/Boom/src/LinAlg/blas.cpp |only
Boom-0.2/Boom/src/Makevars | 2
Boom-0.2/Boom/src/Models/Bart/PosteriorSamplers/BartPosteriorSampler.cpp | 202 -
Boom-0.2/Boom/src/Models/Bart/PosteriorSamplers/GaussianBartPosteriorSampler.cpp | 13
Boom-0.2/Boom/src/Models/BetaBinomialModel.cpp | 16
Boom-0.2/Boom/src/Models/BetaModel.cpp | 10
Boom-0.2/Boom/src/Models/BinomialModel.cpp | 15
Boom-0.2/Boom/src/Models/ChisqModel.cpp | 43
Boom-0.2/Boom/src/Models/DirichletModel.cpp | 36
Boom-0.2/Boom/src/Models/ExponentialModel.cpp | 15
Boom-0.2/Boom/src/Models/GammaModel.cpp | 17
Boom-0.2/Boom/src/Models/GaussianModel.cpp | 20
Boom-0.2/Boom/src/Models/GaussianModelGivenSigma.cpp | 10
Boom-0.2/Boom/src/Models/Glm/BinomialLogitModel.cpp | 10
Boom-0.2/Boom/src/Models/Glm/GlmCoefs.cpp | 14
Boom-0.2/Boom/src/Models/Glm/LogisticRegressionModel.cpp | 70
Boom-0.2/Boom/src/Models/Glm/MultinomialLogitModel.cpp | 100
Boom-0.2/Boom/src/Models/Glm/MvReg2.cpp | 14
Boom-0.2/Boom/src/Models/Glm/MvtRegModel.cpp | 18
Boom-0.2/Boom/src/Models/Glm/OrdinalCutpointModel.cpp | 64
Boom-0.2/Boom/src/Models/Glm/PoissonRegressionModel.cpp | 64
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.cpp | 97
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.cpp | 39
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitDataImputer.cpp | 110
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitSamplerTim.cpp | 22
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.cpp | 106
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/BregVsSampler.cpp | 182 -
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/DAFE_MLM.cpp | 28
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/MLVS.cpp | 28
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/MLVS_data_imputer.cpp | 196 -
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/MlogitRwm.cpp | 29
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/MultinomialLogitCompleteDataSuf.cpp | 12
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/MultinomialLogitCompositeSpikeSlabSampler.cpp | 30
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/NormalMixtureApproximation.cpp | 35
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/PartRegSampler.cpp | 60
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.cpp | 204 -
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.cpp |only
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/RegressionConjSampler.cpp | 20
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/SpikeSlabDaRegressionSampler.cpp | 472 ++-
Boom-0.2/Boom/src/Models/Glm/PosteriorSamplers/SpikeSlabSampler.cpp |only
Boom-0.2/Boom/src/Models/Glm/ProbitRegression.cpp | 72
Boom-0.2/Boom/src/Models/Glm/RegressionModel.cpp | 206 -
Boom-0.2/Boom/src/Models/Glm/TRegression.cpp | 74
Boom-0.2/Boom/src/Models/Glm/VariableSelectionPrior.cpp | 17
Boom-0.2/Boom/src/Models/Glm/WeightedRegressionModel.cpp | 19
Boom-0.2/Boom/src/Models/HMM/HMM2.cpp | 3
Boom-0.2/Boom/src/Models/HMM/HealthStateModel.cpp | 1
Boom-0.2/Boom/src/Models/IRT/IrtModel.cpp | 6
Boom-0.2/Boom/src/Models/IRT/Item.cpp | 2
Boom-0.2/Boom/src/Models/IRT/PartialCreditModel.cpp | 1
Boom-0.2/Boom/src/Models/IndependentMvnModelGivenScalarSigma.cpp | 16
Boom-0.2/Boom/src/Models/MarkovModel.cpp | 6
Boom-0.2/Boom/src/Models/ModelTypes.cpp | 26
Boom-0.2/Boom/src/Models/MultinomialModel.cpp | 6
Boom-0.2/Boom/src/Models/MvnBase.cpp | 37
Boom-0.2/Boom/src/Models/MvnGivenScalarSigma.cpp | 71
Boom-0.2/Boom/src/Models/MvnGivenSigma.cpp | 17
Boom-0.2/Boom/src/Models/MvnModel.cpp | 48
Boom-0.2/Boom/src/Models/MvtModel.cpp | 37
Boom-0.2/Boom/src/Models/PointProcess/HomogeneousPoissonProcess.cpp | 5
Boom-0.2/Boom/src/Models/PointProcess/PosteriorSamplers/WeeklyCyclePoissonProcessSampler.cpp | 71
Boom-0.2/Boom/src/Models/PointProcess/WeeklyCyclePoissonProcess.cpp | 68
Boom-0.2/Boom/src/Models/PoissonGammaModel.cpp | 14
Boom-0.2/Boom/src/Models/PoissonModel.cpp | 17
Boom-0.2/Boom/src/Models/PosteriorSamplers/GaussianConjSampler.cpp | 17
Boom-0.2/Boom/src/Models/PosteriorSamplers/GaussianVarSampler.cpp | 29
Boom-0.2/Boom/src/Models/PosteriorSamplers/GenericGaussianVarianceSampler.cpp |only
Boom-0.2/Boom/src/Models/PosteriorSamplers/IndependentMvnConjSampler.cpp | 39
Boom-0.2/Boom/src/Models/PosteriorSamplers/MvnIndependentVarianceSampler.cpp | 42
Boom-0.2/Boom/src/Models/PosteriorSamplers/SharedSigsqSampler.cpp | 13
Boom-0.2/Boom/src/Models/PosteriorSamplers/ZeroMeanMvnIndependenceSampler.cpp | 50
Boom-0.2/Boom/src/Models/ProductDirichletModel.cpp | 10
Boom-0.2/Boom/src/Models/ScaledChisqModel.cpp | 5
Boom-0.2/Boom/src/Models/StateSpace/PosteriorSamplers/DynamicRegressionPosteriorSampler.cpp | 7
Boom-0.2/Boom/src/Models/StateSpace/PosteriorSamplers/StudentLocalLinearTrendPosteriorSampler.cpp | 42
Boom-0.2/Boom/src/Models/TimeSeries/PosteriorSamplers/ArPosteriorSampler.cpp | 31
Boom-0.2/Boom/src/Models/TimeSeries/PosteriorSamplers/NonzeroMeanAr1Sampler.cpp | 44
Boom-0.2/Boom/src/Models/UniformModel.cpp | 9
Boom-0.2/Boom/src/Models/WeightedMvnModel.cpp | 14
Boom-0.2/Boom/src/Models/WishartModel.cpp | 34
Boom-0.2/Boom/src/Models/ZeroInflatedPoissonModel.cpp | 2
Boom-0.2/Boom/src/Models/ZeroMeanGaussianModel.cpp | 5
Boom-0.2/Boom/src/Models/ZeroMeanMvnModel.cpp | 11
Boom-0.2/Boom/src/Samplers/TIM.cpp | 17
Boom-0.2/Boom/src/TargetFun/TargetFun.cpp | 84
Boom-0.2/Boom/src/boom_r_tools.cpp | 54
Boom-0.2/Boom/src/cpputil/Date.cpp | 2
Boom-0.2/Boom/src/create_mixture_component.cpp | 105
Boom-0.2/Boom/src/extract_mixture_data.cpp | 2
Boom-0.2/Boom/src/list_io.cpp | 1
Boom-0.2/Boom/src/numopt/initialize_derivatives.cpp |only
Boom-0.2/Boom/src/numopt/simulated_annealing.cpp | 27
Boom-0.2/Boom/src/parse_model_formula.cpp |only
Boom-0.2/Boom/src/print_R_timestamp.cpp | 2
Boom-0.2/Boom/src/spike_slab_prior.cpp |only
Boom-0.2/Boom/src/stats/DataTable.cpp | 15
Boom-0.2/Boom/src/stats/Design.cpp | 1090 ++++++--
330 files changed, 10529 insertions(+), 7884 deletions(-)
Title: Plant Architectural Analysis with Yplant and QuasiMC
Diff between YplantQMC versions 0.6-3 dated 2014-12-01 and 0.6-4 dated 2014-12-03
Description: An R implementation of Yplant, combined with the QuasiMC
raytracer. Calculate radiation absorption, transmission and scattering,
photosynthesis and transpiration of virtual 3D plants.
Author: Remko Duursma. QuasiMC by Mik Cieslak. Uses code by Robert Pearcy
(Yplant) and Belinda Medlyn (MAESTRA)
Maintainer: Remko Duursma
DESCRIPTION | 6 +-
MD5 | 6 +-
R/installQuasiMC.R | 139 ++++++++++++++++++++++++--------------------------
man/installQuasiMC.Rd | 2
4 files changed, 76 insertions(+), 77 deletions(-)
Title: R for Elementary Statistics
Diff between tigerstats versions 0.1.6 dated 2014-08-11 and 0.2 dated 2014-12-03
Description: This package consists of data sets and functions that are useful
in the teaching of statistics at an elementary level to students who may
have little or no previous experience with the command line. The functions
for elementary inferential procedures follow a uniform interface for user
input. Some of the functions are instructional applets that
can only be run on the R Studio integrated development environment with
package manipulate attached. R Studio is freely available
(www.rstudio.org), and includes package manipulate. Other instructional
applets are Shiny apps that may be run locally. In teaching the package is
used alongside of package mosaic, which is therefore listed as a
dependency.
Author: Rebekah Robinson
Maintainer: Homer White
tigerstats-0.1.6/tigerstats/R/Ovarian.R |only
tigerstats-0.1.6/tigerstats/R/RectShade.R |only
tigerstats-0.1.6/tigerstats/R/SmallExp.R |only
tigerstats-0.1.6/tigerstats/R/UnderShade.R |only
tigerstats-0.1.6/tigerstats/R/alcohol.R |only
tigerstats-0.1.6/tigerstats/R/attitudes.R |only
tigerstats-0.1.6/tigerstats/R/beans.R |only
tigerstats-0.1.6/tigerstats/R/cabrera.R |only
tigerstats-0.1.6/tigerstats/R/chisq.testGC.R |only
tigerstats-0.1.6/tigerstats/R/chugtime.R |only
tigerstats-0.1.6/tigerstats/R/deathpen.R |only
tigerstats-0.1.6/tigerstats/R/fuel.R |only
tigerstats-0.1.6/tigerstats/R/galton.R |only
tigerstats-0.1.6/tigerstats/R/gcfeeling.R |only
tigerstats-0.1.6/tigerstats/R/gcstudents.R |only
tigerstats-0.1.6/tigerstats/R/gss02.R |only
tigerstats-0.1.6/tigerstats/R/gss08.R |only
tigerstats-0.1.6/tigerstats/R/gss2012.R |only
tigerstats-0.1.6/tigerstats/R/hair_and_act.R |only
tigerstats-0.1.6/tigerstats/R/handheight.R |only
tigerstats-0.1.6/tigerstats/R/hanford1.R |only
tigerstats-0.1.6/tigerstats/R/hanford2.R |only
tigerstats-0.1.6/tigerstats/R/hofbatting.R |only
tigerstats-0.1.6/tigerstats/R/hofpitching.R |only
tigerstats-0.1.6/tigerstats/R/imagpop.R |only
tigerstats-0.1.6/tigerstats/R/iqsiblings.R |only
tigerstats-0.1.6/tigerstats/R/knifeorgunblock.R |only
tigerstats-0.1.6/tigerstats/R/labels.R |only
tigerstats-0.1.6/tigerstats/R/ledgejump.R |only
tigerstats-0.1.6/tigerstats/R/m111survey.R |only
tigerstats-0.1.6/tigerstats/R/m111surveyfa12.R |only
tigerstats-0.1.6/tigerstats/R/m111surveyfa13.R |only
tigerstats-0.1.6/tigerstats/R/music.R |only
tigerstats-0.1.6/tigerstats/R/napkins.R |only
tigerstats-0.1.6/tigerstats/R/nonresponse.R |only
tigerstats-0.1.6/tigerstats/R/nosmokeday.R |only
tigerstats-0.1.6/tigerstats/R/oldfaithful.R |only
tigerstats-0.1.6/tigerstats/R/parseformula.R |only
tigerstats-0.1.6/tigerstats/R/pennstate1.R |only
tigerstats-0.1.6/tigerstats/R/plot_lmGC.R |only
tigerstats-0.1.6/tigerstats/R/predict_lmGC.R |only
tigerstats-0.1.6/tigerstats/R/print_GCp1test.R |only
tigerstats-0.1.6/tigerstats/R/print_GCp2test.R |only
tigerstats-0.1.6/tigerstats/R/print_GCttest.R |only
tigerstats-0.1.6/tigerstats/R/print_lmGC.R |only
tigerstats-0.1.6/tigerstats/R/pushups.R |only
tigerstats-0.1.6/tigerstats/R/saltmarsh.R |only
tigerstats-0.1.6/tigerstats/R/sat.R |only
tigerstats-0.1.6/tigerstats/R/seals.R |only
tigerstats-0.1.6/tigerstats/R/simpleFind.R |only
tigerstats-0.1.6/tigerstats/R/stumps.R |only
tigerstats-0.1.6/tigerstats/R/temperature.R |only
tigerstats-0.1.6/tigerstats/R/tornado.R |only
tigerstats-0.1.6/tigerstats/R/ucdavis1.R |only
tigerstats-0.1.6/tigerstats/R/ucdavis2.R |only
tigerstats-0.1.6/tigerstats/R/verlander.R |only
tigerstats-0.1.6/tigerstats/R/youthrisk03.R |only
tigerstats-0.1.6/tigerstats/data/seals.rda |only
tigerstats-0.1.6/tigerstats/man/chisq.testGC.Rd |only
tigerstats-0.1.6/tigerstats/man/seals.Rd |only
tigerstats-0.1.6/tigerstats/man/udavis2.Rd |only
tigerstats-0.2/tigerstats/DESCRIPTION | 29 -
tigerstats-0.2/tigerstats/MD5 | 448 +++++++++++---------
tigerstats-0.2/tigerstats/NAMESPACE | 22
tigerstats-0.2/tigerstats/R/BinomNorm.R | 5
tigerstats-0.2/tigerstats/R/BinomSkew.R | 5
tigerstats-0.2/tigerstats/R/CIMean.R | 6
tigerstats-0.2/tigerstats/R/CIProp.R | 6
tigerstats-0.2/tigerstats/R/ChisqSimSlow.R | 8
tigerstats-0.2/tigerstats/R/DtrellHist.R | 7
tigerstats-0.2/tigerstats/R/DtrellScat.R | 6
tigerstats-0.2/tigerstats/R/EmpRule.R | 5
tigerstats-0.2/tigerstats/R/EmpRuleGC.R | 7
tigerstats-0.2/tigerstats/R/FindRegLine.R | 7
tigerstats-0.2/tigerstats/R/MeanSampler.R | 6
tigerstats-0.2/tigerstats/R/Points2Watch.R | 7
tigerstats-0.2/tigerstats/R/PropSampler.R | 6
tigerstats-0.2/tigerstats/R/RegEstimate.R | 6
tigerstats-0.2/tigerstats/R/SampDist2Means.R | 14
tigerstats-0.2/tigerstats/R/SampDist2Props.R | 7
tigerstats-0.2/tigerstats/R/SampDistMean.R | 6
tigerstats-0.2/tigerstats/R/ShallowReg.R | 16
tigerstats-0.2/tigerstats/R/SimpleRandom.R | 8
tigerstats-0.2/tigerstats/R/SimpleRandom2.R |only
tigerstats-0.2/tigerstats/R/Skewer.R | 22
tigerstats-0.2/tigerstats/R/SlowGoodness.R | 2
tigerstats-0.2/tigerstats/R/Type12Errors.R | 6
tigerstats-0.2/tigerstats/R/Variability.R | 14
tigerstats-0.2/tigerstats/R/VaryCorrelation.R | 6
tigerstats-0.2/tigerstats/R/barchartGC.R | 369 +++++++++++++++-
tigerstats-0.2/tigerstats/R/binomtestGC.R | 166 +++++--
tigerstats-0.2/tigerstats/R/chisqtestGC.R | 367 +++++++++++-----
tigerstats-0.2/tigerstats/R/colPerc.R | 1
tigerstats-0.2/tigerstats/R/data.R |only
tigerstats-0.2/tigerstats/R/expCounts.R |only
tigerstats-0.2/tigerstats/R/helpGC.R |only
tigerstats-0.2/tigerstats/R/lmGC.R | 211 ++++++++-
tigerstats-0.2/tigerstats/R/polyfitGC.R |only
tigerstats-0.2/tigerstats/R/proptestGC.R | 191 ++++++++
tigerstats-0.2/tigerstats/R/qnormGC.R |only
tigerstats-0.2/tigerstats/R/rowPerc.R | 7
tigerstats-0.2/tigerstats/R/tExplore.R | 6
tigerstats-0.2/tigerstats/R/tSampler.R | 6
tigerstats-0.2/tigerstats/R/theme.R | 2
tigerstats-0.2/tigerstats/R/themerpres.R | 2
tigerstats-0.2/tigerstats/R/tigerstats-package.R | 3
tigerstats-0.2/tigerstats/R/ttestGC.R | 171 +++++++
tigerstats-0.2/tigerstats/R/utilities.R |only
tigerstats-0.2/tigerstats/README.md | 22
tigerstats-0.2/tigerstats/build |only
tigerstats-0.2/tigerstats/data/henderson.rda |only
tigerstats-0.2/tigerstats/data/sealsO2.rda |only
tigerstats-0.2/tigerstats/data/tips.rda |only
tigerstats-0.2/tigerstats/inst/CentralLimit/ui.R | 2
tigerstats-0.2/tigerstats/inst/NEWS.Rd | 39 +
tigerstats-0.2/tigerstats/inst/SamplingMethods |only
tigerstats-0.2/tigerstats/inst/doc |only
tigerstats-0.2/tigerstats/man/BinomNorm.Rd | 2
tigerstats-0.2/tigerstats/man/BinomSkew.Rd | 2
tigerstats-0.2/tigerstats/man/CIMean.Rd | 2
tigerstats-0.2/tigerstats/man/CIProp.Rd | 2
tigerstats-0.2/tigerstats/man/ChisqSimSlow.Rd | 6
tigerstats-0.2/tigerstats/man/DtrellHist.Rd | 2
tigerstats-0.2/tigerstats/man/DtrellScat.Rd | 2
tigerstats-0.2/tigerstats/man/EmpRule.Rd | 2
tigerstats-0.2/tigerstats/man/EmpRuleGC.Rd | 2
tigerstats-0.2/tigerstats/man/FakeSchool.Rd | 2
tigerstats-0.2/tigerstats/man/FindRegLine.Rd | 2
tigerstats-0.2/tigerstats/man/MeanSampler.Rd | 2
tigerstats-0.2/tigerstats/man/Ovarian.Rd | 2
tigerstats-0.2/tigerstats/man/ParseFormula.Rd | 2
tigerstats-0.2/tigerstats/man/Points2Watch.Rd | 2
tigerstats-0.2/tigerstats/man/PropSampler.Rd | 2
tigerstats-0.2/tigerstats/man/RandomExp.Rd | 2
tigerstats-0.2/tigerstats/man/RectShade.Rd | 3
tigerstats-0.2/tigerstats/man/RegEstimate.Rd | 2
tigerstats-0.2/tigerstats/man/SampDist2Means.Rd | 2
tigerstats-0.2/tigerstats/man/SampDist2Props.Rd | 2
tigerstats-0.2/tigerstats/man/SampDistMean.Rd | 2
tigerstats-0.2/tigerstats/man/ShallowReg.Rd | 2
tigerstats-0.2/tigerstats/man/SimpleRandom.Rd | 2
tigerstats-0.2/tigerstats/man/SimpleRandom2.Rd |only
tigerstats-0.2/tigerstats/man/Skewer.Rd | 2
tigerstats-0.2/tigerstats/man/SlowGoodness.Rd | 4
tigerstats-0.2/tigerstats/man/SmallExp.Rd | 2
tigerstats-0.2/tigerstats/man/Type12Errors.Rd | 2
tigerstats-0.2/tigerstats/man/UnderShade.Rd | 2
tigerstats-0.2/tigerstats/man/Variability.Rd | 2
tigerstats-0.2/tigerstats/man/VaryCorrelation.Rd | 2
tigerstats-0.2/tigerstats/man/alcohol.Rd | 2
tigerstats-0.2/tigerstats/man/attitudes.Rd | 2
tigerstats-0.2/tigerstats/man/barchartGC.Rd | 34 +
tigerstats-0.2/tigerstats/man/beans.Rd | 2
tigerstats-0.2/tigerstats/man/binomtestGC.Rd | 15
tigerstats-0.2/tigerstats/man/cabrera.Rd | 2
tigerstats-0.2/tigerstats/man/chisqtestGC.Rd | 17
tigerstats-0.2/tigerstats/man/chugtime.Rd | 2
tigerstats-0.2/tigerstats/man/colPerc.Rd | 2
tigerstats-0.2/tigerstats/man/deathpen.Rd | 25 -
tigerstats-0.2/tigerstats/man/expCounts.Rd |only
tigerstats-0.2/tigerstats/man/fuel.Rd | 2
tigerstats-0.2/tigerstats/man/galton.Rd | 2
tigerstats-0.2/tigerstats/man/gcfeeling.Rd | 2
tigerstats-0.2/tigerstats/man/gcstudents.Rd | 2
tigerstats-0.2/tigerstats/man/gss02.Rd | 2
tigerstats-0.2/tigerstats/man/gss08.Rd | 2
tigerstats-0.2/tigerstats/man/gss2012.Rd | 2
tigerstats-0.2/tigerstats/man/hair_and_act.Rd | 2
tigerstats-0.2/tigerstats/man/handheight.Rd | 2
tigerstats-0.2/tigerstats/man/hanford1.Rd | 2
tigerstats-0.2/tigerstats/man/hanford2.Rd | 2
tigerstats-0.2/tigerstats/man/helpGC.Rd |only
tigerstats-0.2/tigerstats/man/henderson.Rd |only
tigerstats-0.2/tigerstats/man/hofbatting.Rd | 2
tigerstats-0.2/tigerstats/man/hofpitching.Rd | 2
tigerstats-0.2/tigerstats/man/imagpop.Rd | 2
tigerstats-0.2/tigerstats/man/iqsiblings.Rd | 2
tigerstats-0.2/tigerstats/man/knifeorgunblock.Rd | 2
tigerstats-0.2/tigerstats/man/labels.Rd | 2
tigerstats-0.2/tigerstats/man/ledgejump.Rd | 2
tigerstats-0.2/tigerstats/man/lmGC.Rd | 9
tigerstats-0.2/tigerstats/man/m111survey.Rd | 2
tigerstats-0.2/tigerstats/man/m111surveyfa12.Rd | 2
tigerstats-0.2/tigerstats/man/m111surveyfa13.Rd | 2
tigerstats-0.2/tigerstats/man/music.Rd | 2
tigerstats-0.2/tigerstats/man/napkins.Rd | 5
tigerstats-0.2/tigerstats/man/nonresponse.Rd | 2
tigerstats-0.2/tigerstats/man/nosmokeday.Rd | 2
tigerstats-0.2/tigerstats/man/oldfaithful.Rd | 2
tigerstats-0.2/tigerstats/man/pbinomGC.Rd | 2
tigerstats-0.2/tigerstats/man/pchisqGC.Rd | 2
tigerstats-0.2/tigerstats/man/pennstate1.Rd | 2
tigerstats-0.2/tigerstats/man/plot.GClm.Rd | 21
tigerstats-0.2/tigerstats/man/plot.polyGC.Rd |only
tigerstats-0.2/tigerstats/man/pnormGC.Rd | 2
tigerstats-0.2/tigerstats/man/polyfitGC.Rd |only
tigerstats-0.2/tigerstats/man/popsamp.Rd | 2
tigerstats-0.2/tigerstats/man/predict.GClm.Rd | 9
tigerstats-0.2/tigerstats/man/predict.polyGC.Rd |only
tigerstats-0.2/tigerstats/man/print.GCbinomtest.Rd |only
tigerstats-0.2/tigerstats/man/print.GCchisqtest.Rd |only
tigerstats-0.2/tigerstats/man/print.GClm.Rd | 2
tigerstats-0.2/tigerstats/man/print.GCttest.Rd | 2
tigerstats-0.2/tigerstats/man/print.gcp1test.Rd | 2
tigerstats-0.2/tigerstats/man/print.gcp2test.Rd | 2
tigerstats-0.2/tigerstats/man/print.polyGC.Rd |only
tigerstats-0.2/tigerstats/man/proptestGC.Rd | 13
tigerstats-0.2/tigerstats/man/ptGC.Rd | 2
tigerstats-0.2/tigerstats/man/pushups.Rd | 2
tigerstats-0.2/tigerstats/man/qnormGC.Rd |only
tigerstats-0.2/tigerstats/man/rowPerc.Rd | 2
tigerstats-0.2/tigerstats/man/saltmarsh.Rd | 2
tigerstats-0.2/tigerstats/man/sat.Rd | 2
tigerstats-0.2/tigerstats/man/sealsO2.Rd |only
tigerstats-0.2/tigerstats/man/simpleFind.Rd | 6
tigerstats-0.2/tigerstats/man/simpleKeyRev.Rd |only
tigerstats-0.2/tigerstats/man/stumps.Rd | 2
tigerstats-0.2/tigerstats/man/tExplore.Rd | 2
tigerstats-0.2/tigerstats/man/tSampler.Rd | 2
tigerstats-0.2/tigerstats/man/temperature.Rd | 2
tigerstats-0.2/tigerstats/man/theme.rpres.Rd | 2
tigerstats-0.2/tigerstats/man/themerpres.Rd | 2
tigerstats-0.2/tigerstats/man/tigerstats-package.Rd | 2
tigerstats-0.2/tigerstats/man/tips.Rd |only
tigerstats-0.2/tigerstats/man/tornado.Rd | 2
tigerstats-0.2/tigerstats/man/ttestGC.Rd | 17
tigerstats-0.2/tigerstats/man/ucdavis1.Rd | 2
tigerstats-0.2/tigerstats/man/verlander.Rd | 2
tigerstats-0.2/tigerstats/man/youthrisk03.Rd | 2
tigerstats-0.2/tigerstats/vignettes |only
230 files changed, 1967 insertions(+), 637 deletions(-)
Title: R Client for Adobe Analytics API v1.4
Diff between RSiteCatalyst versions 1.4.1 dated 2014-11-09 and 1.4.2 dated 2014-12-03
Description: Functions for accessing the Adobe Analytics Reporting API
Author: Willem Paling, Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch
RSiteCatalyst-1.4.1/RSiteCatalyst/R/JsonQueueReport.R |only
RSiteCatalyst-1.4.1/RSiteCatalyst/man/JsonQueueReport.Rd |only
RSiteCatalyst-1.4.2/RSiteCatalyst/DESCRIPTION | 8 -
RSiteCatalyst-1.4.2/RSiteCatalyst/MD5 | 56 +++++-----
RSiteCatalyst-1.4.2/RSiteCatalyst/NAMESPACE | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/NEWS | 9 +
RSiteCatalyst-1.4.2/RSiteCatalyst/R/BuildInnerBreakdownsRecursively.R | 24 ++--
RSiteCatalyst-1.4.2/RSiteCatalyst/R/ParseRanked.R | 4
RSiteCatalyst-1.4.2/RSiteCatalyst/R/ParseTrended.R | 4
RSiteCatalyst-1.4.2/RSiteCatalyst/R/QueueFallout.R | 2
RSiteCatalyst-1.4.2/RSiteCatalyst/R/QueueOvertime.R | 13 +-
RSiteCatalyst-1.4.2/RSiteCatalyst/R/QueuePathing.R | 2
RSiteCatalyst-1.4.2/RSiteCatalyst/R/QueueRanked.R | 12 +-
RSiteCatalyst-1.4.2/RSiteCatalyst/R/QueueTrended.R | 2
RSiteCatalyst-1.4.2/RSiteCatalyst/R/RSiteCatalyst.R | 4
RSiteCatalyst-1.4.2/RSiteCatalyst/R/SubmitJsonQueueReport.R |only
RSiteCatalyst-1.4.2/RSiteCatalyst/man/ApiRequest.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/BuildHeader.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/BuildInnerBreakdownsRecursively.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/GetEndpoint.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/GetUsageLog.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/JsonQueueRealTimeReport.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/ParseFallout.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/ParseOvertime.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/ParsePathing.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/ParseRanked.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/ParseTrended.Rd | 1
RSiteCatalyst-1.4.2/RSiteCatalyst/man/QueueOvertime.Rd | 11 +
RSiteCatalyst-1.4.2/RSiteCatalyst/man/QueueRanked.Rd | 2
RSiteCatalyst-1.4.2/RSiteCatalyst/man/RSiteCatalyst.Rd | 4
RSiteCatalyst-1.4.2/RSiteCatalyst/man/SubmitJsonQueueReport.Rd |only
31 files changed, 96 insertions(+), 73 deletions(-)
Title: Tools for Reading SDMX Data and Metadata
Diff between rsdmx versions 0.4-2 dated 2014-11-03 and 0.4-3 dated 2014-12-03
Description: rsdmx provides a set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework. The
package currently focuses on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb]
Maintainer: Emmanuel Blondel
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
R/SDMXCompactData-methods.R | 2 +-
R/SDMXGenericData-methods.R | 2 +-
R/readSDMX.R | 2 +-
man/rsdmx-package.Rd | 6 +++---
6 files changed, 16 insertions(+), 16 deletions(-)
Title: Functions for the Bayesian Analysis of GWAS Data
Diff between genMOSS versions 1.1 dated 2013-09-19 and 1.2 dated 2014-12-03
Description: Implements the Mode Oriented Stochastic Search (MOSS) algorithm as well as a simple moving window approach to look for combinations of SNPs that are associated with a response.
Author: Matthew Friedlander, Adrian Dobra, Helene Massam, and Laurent Briollais
Maintainer: Matthew Friedlander
DESCRIPTION | 16 ++++++++--------
MD5 | 32 ++++++++++++++++++--------------
NAMESPACE | 9 +++++----
R/MOSS_GWAS.R | 6 +++---
R/MOSS_GWAS_main.R | 43 ++++++++++++++++++++++++++++++++-----------
R/check_args_MOSS_GWAS.R | 16 ++++++++++++++--
R/cvFunc.R | 40 +++++++++++++++++-----------------------
R/findNeighbours.R | 15 +++++++--------
R/logLaplace.R | 3 +--
R/mWindow_main.R | 4 ++--
build |only
inst |only
man/MOSS_GWAS.Rd | 17 ++++++++++-------
man/genMOSS.Rd | 10 +++++-----
man/mWindow.Rd | 6 +++---
man/recode_data.Rd | 6 +++---
man/simuCC.Rd | 24 ++++++++++++------------
vignettes |only
18 files changed, 140 insertions(+), 107 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Diff between dataRetrieval versions 2.0.0 dated 2014-11-13 and 2.0.1 dated 2014-12-03
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from the
National Water Information Services (NWIS) tools found here:
http://waterservices.usgs.gov/ Both EPA and USGS water quality data are
obtained from the Water Quality Portal found here:
http://www.waterqualitydata.us/portal.jsp
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut]
Maintainer: Laura DeCicco
dataRetrieval-2.0.0/dataRetrieval/LICENSE |only
dataRetrieval-2.0.0/dataRetrieval/R/deprecatedFunctions.R |only
dataRetrieval-2.0.0/dataRetrieval/vignettes/dataRetrieval-concordance.tex |only
dataRetrieval-2.0.1/dataRetrieval/DESCRIPTION | 13
dataRetrieval-2.0.1/dataRetrieval/LICENSE.note |only
dataRetrieval-2.0.1/dataRetrieval/MD5 | 112 ++--
dataRetrieval-2.0.1/dataRetrieval/NAMESPACE | 11
dataRetrieval-2.0.1/dataRetrieval/NEWS | 7
dataRetrieval-2.0.1/dataRetrieval/R/constructNWISURL.r | 31 -
dataRetrieval-2.0.1/dataRetrieval/R/importRDB1.r | 64 +-
dataRetrieval-2.0.1/dataRetrieval/R/importWQP.R | 24
dataRetrieval-2.0.1/dataRetrieval/R/importWaterML1.r | 250 ++++++----
dataRetrieval-2.0.1/dataRetrieval/R/importWaterML2.r | 19
dataRetrieval-2.0.1/dataRetrieval/R/readNWISdata.r | 29 +
dataRetrieval-2.0.1/dataRetrieval/R/readNWISdv.r | 50 +-
dataRetrieval-2.0.1/dataRetrieval/R/readNWISpCode.r | 16
dataRetrieval-2.0.1/dataRetrieval/R/readNWISqw.r | 76 ++-
dataRetrieval-2.0.1/dataRetrieval/R/readNWISsite.r | 57 ++
dataRetrieval-2.0.1/dataRetrieval/R/readNWISunit.r | 227 +++++++--
dataRetrieval-2.0.1/dataRetrieval/R/readWQPdata.R | 119 ++++
dataRetrieval-2.0.1/dataRetrieval/R/readWQPqw.r | 152 +++++-
dataRetrieval-2.0.1/dataRetrieval/R/tabbedDataRetrievals.R | 59 ++
dataRetrieval-2.0.1/dataRetrieval/R/whatNWISdata.r | 51 +-
dataRetrieval-2.0.1/dataRetrieval/R/whatNWISsites.R | 19
dataRetrieval-2.0.1/dataRetrieval/R/whatWQPsites.R | 44 +
dataRetrieval-2.0.1/dataRetrieval/R/zeroPad.r | 6
dataRetrieval-2.0.1/dataRetrieval/README.md | 63 +-
dataRetrieval-2.0.1/dataRetrieval/build/vignette.rds |binary
dataRetrieval-2.0.1/dataRetrieval/data/pCodeToName.RData |only
dataRetrieval-2.0.1/dataRetrieval/inst/doc/dataRetrieval.R | 35 -
dataRetrieval-2.0.1/dataRetrieval/inst/doc/dataRetrieval.Rnw | 113 ++--
dataRetrieval-2.0.1/dataRetrieval/inst/doc/dataRetrieval.pdf |binary
dataRetrieval-2.0.1/dataRetrieval/man/constructNWISURL.Rd | 10
dataRetrieval-2.0.1/dataRetrieval/man/constructWQPURL.Rd | 6
dataRetrieval-2.0.1/dataRetrieval/man/dataRetrieval-package.Rd | 13
dataRetrieval-2.0.1/dataRetrieval/man/importRDB1.Rd | 40 +
dataRetrieval-2.0.1/dataRetrieval/man/importWQP.Rd | 13
dataRetrieval-2.0.1/dataRetrieval/man/importWaterML1.Rd | 45 +
dataRetrieval-2.0.1/dataRetrieval/man/importWaterML2.Rd | 11
dataRetrieval-2.0.1/dataRetrieval/man/pCodeToName.Rd |only
dataRetrieval-2.0.1/dataRetrieval/man/parameterCdFile.Rd | 21
dataRetrieval-2.0.1/dataRetrieval/man/readNWISdata.Rd | 35 +
dataRetrieval-2.0.1/dataRetrieval/man/readNWISdv.Rd | 49 +
dataRetrieval-2.0.1/dataRetrieval/man/readNWISgwl.Rd | 45 +
dataRetrieval-2.0.1/dataRetrieval/man/readNWISmeas.Rd | 43 +
dataRetrieval-2.0.1/dataRetrieval/man/readNWISpCode.Rd | 20
dataRetrieval-2.0.1/dataRetrieval/man/readNWISpeak.Rd | 45 +
dataRetrieval-2.0.1/dataRetrieval/man/readNWISqw.Rd | 67 +-
dataRetrieval-2.0.1/dataRetrieval/man/readNWISrating.Rd | 33 +
dataRetrieval-2.0.1/dataRetrieval/man/readNWISsite.Rd | 62 ++
dataRetrieval-2.0.1/dataRetrieval/man/readNWISuv.Rd | 52 +-
dataRetrieval-2.0.1/dataRetrieval/man/readWQPdata.Rd | 87 +++
dataRetrieval-2.0.1/dataRetrieval/man/readWQPqw.Rd | 100 +++-
dataRetrieval-2.0.1/dataRetrieval/man/whatNWISdata.Rd | 55 +-
dataRetrieval-2.0.1/dataRetrieval/man/whatNWISsites.Rd | 24
dataRetrieval-2.0.1/dataRetrieval/man/whatWQPsites.Rd | 48 +
dataRetrieval-2.0.1/dataRetrieval/man/zeroPad.Rd | 6
dataRetrieval-2.0.1/dataRetrieval/vignettes/Rhelp.png |binary
dataRetrieval-2.0.1/dataRetrieval/vignettes/dataRetrieval.Rnw | 113 ++--
dataRetrieval-2.0.1/dataRetrieval/vignettes/figure/getNWIStemperaturePlot-1.pdf |binary
60 files changed, 2059 insertions(+), 631 deletions(-)
Title: Simplify the Creation of Choropleth Maps in R
Diff between choroplethr versions 2.0.0 dated 2014-10-27 and 2.1.0 dated 2014-12-03
Description: Choropleths are thematic maps where geographic regions, such as
states, are colored according to some metric, such as the number of people
who live in that state. choroplethr simplifies this process by 1.
Providing ready-made functions for creating choropleths of common maps. 2.
Providing API connections to interesting data sources for making
choropleths. 3. Providing a framework for creating choropleths from
arbitrary shapefiles. Please see the vignettes for more details.
Author: Ari Lamstein
Maintainer: Ari Lamstein
DESCRIPTION | 33 +++++++++++-------------
MD5 | 47 ++++++++++++++++++++++-------------
NAMESPACE | 4 ++
NEWS | 10 +++++++
R/admin1.R |only
R/admin1_data.R |only
R/choropleth.R | 2 -
R/county_zoom.R |only
R/state_data.R | 3 +-
README.md | 16 +++++------
build/vignette.rds |binary
data/df_japan_census.rdata |only
data/df_president.rdata |binary
inst/doc/j-creating-admin1-maps.R |only
inst/doc/j-creating-admin1-maps.Rmd |only
inst/doc/j-creating-admin1-maps.html |only
man/Admin1Choropleth.Rd |only
man/CountryChoropleth.Rd | 2 -
man/CountyChoropleth.Rd | 2 -
man/CountyZoomChoropleth.Rd |only
man/StateChoropleth.Rd | 2 -
man/USAChoropleth.Rd | 2 -
man/ZipMap.Rd | 2 -
man/admin1_choropleth.Rd |only
man/county_zoom_choropleth.Rd |only
man/df_japan_census.Rd |only
man/df_president.Rd | 5 ++-
vignettes/b-state-choropleth.Rmd | 9 +++++-
vignettes/c-county-choropleth.Rmd | 9 +++++-
vignettes/d-zip-map.Rmd | 7 ++++-
vignettes/j-creating-admin1-maps.Rmd |only
31 files changed, 102 insertions(+), 53 deletions(-)
Title: Diagnostics plots for Bicluster Data
Diff between BcDiag versions 1.0.6 dated 2014-12-02 and 1.0.7 dated 2014-12-03
Description: Diagnostic tools based on two-way
anova and median-polish residual plots for Bicluster output
obtained from packages; "biclust" by Kaiser et al.(2008),"isa2"
by Csardi et al. (2010) and "fabia" by Hochreiter et al.
(2010). Moreover, It provides visualization tools for bicluster
output and corresponding non-bicluster rows- or columns
outcomes. It has also extended the idea of Kaiser et al.(2008)
which is, extracting bicluster output in a text format, by
adding two bicluster methods from the fabia and isa2 R
packages.
Author: Aregay Mengsteab, Martin Otava, Tatsiana Khamiakova, Ewoud De Troyer
Maintainer: Ewoud De Troyer
DESCRIPTION | 18 +++++++++---------
MD5 | 24 ++++++++++++------------
R/anomedOnlybic.R | 4 ++--
R/exploreBic.R | 4 ++--
R/exploreOnlybic.R | 4 ++--
R/profileBic.R | 4 ++--
R/support.R | 5 +++--
R/writeBic.R | 4 ++--
man/anomedOnlybic.Rd | 5 ++++-
man/exploreBic.Rd | 6 +++++-
man/exploreOnlybic.Rd | 5 ++++-
man/profileBic.Rd | 4 +++-
man/writeBic.Rd | 5 ++++-
13 files changed, 54 insertions(+), 38 deletions(-)