Title: Estimation of Transition Probabilities in Multistate Models
Diff between TPmsm versions 1.1.1 dated 2014-03-18 and 1.2.0 dated 2014-12-09
Description: Estimation of transition probabilities for the
illness-death model and or the three-state progressive model
Author: Artur Araujo, Javier Roca-Pardinas
Maintainer: Artur Araujo
TPmsm-1.1.1/TPmsm/R/threadsTP.R |only
TPmsm-1.1.1/TPmsm/man/threadsTP.Rd |only
TPmsm-1.1.1/TPmsm/src/boot.c |only
TPmsm-1.1.1/TPmsm/src/boot.h |only
TPmsm-1.2.0/TPmsm/DESCRIPTION | 14 -
TPmsm-1.2.0/TPmsm/MD5 | 158 +++++++-------
TPmsm-1.2.0/TPmsm/NAMESPACE | 40 +--
TPmsm-1.2.0/TPmsm/R/TransBoot.R | 4
TPmsm-1.2.0/TPmsm/R/TransWidth.R | 30 +-
TPmsm-1.2.0/TPmsm/R/contour.TPCmsm.R | 122 +++++------
TPmsm-1.2.0/TPmsm/R/csample.int.R |only
TPmsm-1.2.0/TPmsm/R/image.TPCmsm.R | 190 ++++++++---------
TPmsm-1.2.0/TPmsm/R/lines.TPCmsm.R | 150 ++++++-------
TPmsm-1.2.0/TPmsm/R/lines.TPmsm.R | 62 ++---
TPmsm-1.2.0/TPmsm/R/plot.TPCmsm.R | 170 +++++++--------
TPmsm-1.2.0/TPmsm/R/plot.TPmsm.R | 68 +++---
TPmsm-1.2.0/TPmsm/R/setPackageSeedTP.R |only
TPmsm-1.2.0/TPmsm/R/setSeedTP.R |only
TPmsm-1.2.0/TPmsm/R/setThreadsTP.R |only
TPmsm-1.2.0/TPmsm/R/survTP.R | 18 +
TPmsm-1.2.0/TPmsm/inst/CITATION | 37 +--
TPmsm-1.2.0/TPmsm/inst/NEWS.Rd | 20 +
TPmsm-1.2.0/TPmsm/man/TPmsm-package.Rd | 145 ++++++-------
TPmsm-1.2.0/TPmsm/man/TPmsmOut.Rd | 20 +
TPmsm-1.2.0/TPmsm/man/as.data.frame.survTP.Rd | 17 -
TPmsm-1.2.0/TPmsm/man/bladderTP.Rd | 12 -
TPmsm-1.2.0/TPmsm/man/colonTP.Rd | 40 +--
TPmsm-1.2.0/TPmsm/man/contour.TPCmsm.Rd | 48 ++--
TPmsm-1.2.0/TPmsm/man/corrTP.Rd | 23 +-
TPmsm-1.2.0/TPmsm/man/dgpTP.Rd | 45 ++--
TPmsm-1.2.0/TPmsm/man/heartTP.Rd | 10
TPmsm-1.2.0/TPmsm/man/image.TPCmsm.Rd | 49 ++--
TPmsm-1.2.0/TPmsm/man/lines.TPCmsm.Rd | 39 ++-
TPmsm-1.2.0/TPmsm/man/lines.TPmsm.Rd | 32 +-
TPmsm-1.2.0/TPmsm/man/plot.TPCmsm.Rd | 37 ++-
TPmsm-1.2.0/TPmsm/man/plot.TPmsm.Rd | 34 +--
TPmsm-1.2.0/TPmsm/man/setPackageSeedTP.Rd |only
TPmsm-1.2.0/TPmsm/man/setSeedTP.Rd |only
TPmsm-1.2.0/TPmsm/man/setThreadsTP.Rd |only
TPmsm-1.2.0/TPmsm/man/survTP.Rd | 32 +-
TPmsm-1.2.0/TPmsm/man/transAJ.Rd | 35 +--
TPmsm-1.2.0/TPmsm/man/transIPCW.Rd | 288 +++++++++++++-------------
TPmsm-1.2.0/TPmsm/man/transKMPW.Rd | 35 +--
TPmsm-1.2.0/TPmsm/man/transKMW.Rd | 35 +--
TPmsm-1.2.0/TPmsm/man/transLIN.Rd | 266 ++++++++++++------------
TPmsm-1.2.0/TPmsm/man/transLS.Rd | 219 ++++++++++---------
TPmsm-1.2.0/TPmsm/man/transPAJ.Rd | 33 +-
TPmsm-1.2.0/TPmsm/src/BtoTPCmsm.c | 6
TPmsm-1.2.0/TPmsm/src/BtoTPmsm.c | 83 +++++--
TPmsm-1.2.0/TPmsm/src/RngArray.c |only
TPmsm-1.2.0/TPmsm/src/RngArray.h |only
TPmsm-1.2.0/TPmsm/src/RngBoot.c |only
TPmsm-1.2.0/TPmsm/src/RngBoot.h |only
TPmsm-1.2.0/TPmsm/src/RngStream.c |only
TPmsm-1.2.0/TPmsm/src/RngStream.h |only
TPmsm-1.2.0/TPmsm/src/TPmsm-win.def | 1
TPmsm-1.2.0/TPmsm/src/dgpTP.c | 72 ++++--
TPmsm-1.2.0/TPmsm/src/get.c | 6
TPmsm-1.2.0/TPmsm/src/init.c | 17 +
TPmsm-1.2.0/TPmsm/src/kmsurv.c | 2
TPmsm-1.2.0/TPmsm/src/logistic.c | 75 ++++--
TPmsm-1.2.0/TPmsm/src/logistic.h | 12 -
TPmsm-1.2.0/TPmsm/src/quantile.c | 2
TPmsm-1.2.0/TPmsm/src/rseed.c |only
TPmsm-1.2.0/TPmsm/src/rseed.h |only
TPmsm-1.2.0/TPmsm/src/rthreads.c | 20 -
TPmsm-1.2.0/TPmsm/src/rthreads.h | 1
TPmsm-1.2.0/TPmsm/src/sample.c |only
TPmsm-1.2.0/TPmsm/src/sample.h |only
TPmsm-1.2.0/TPmsm/src/sort.c | 40 +--
TPmsm-1.2.0/TPmsm/src/splines.c | 2
TPmsm-1.2.0/TPmsm/src/toTPCmsm.c | 6
TPmsm-1.2.0/TPmsm/src/toTPmsm.c | 83 +++++--
TPmsm-1.2.0/TPmsm/src/transAJ.c | 70 +++---
TPmsm-1.2.0/TPmsm/src/transIPCW1.c | 67 +++---
TPmsm-1.2.0/TPmsm/src/transIPCW2.c | 122 ++++++-----
TPmsm-1.2.0/TPmsm/src/transKMPW1.c | 100 +++++----
TPmsm-1.2.0/TPmsm/src/transKMPW2.c | 126 +++++++----
TPmsm-1.2.0/TPmsm/src/transKMW.c | 68 +++---
TPmsm-1.2.0/TPmsm/src/transKMW1.c | 4
TPmsm-1.2.0/TPmsm/src/transKMW2.c | 4
TPmsm-1.2.0/TPmsm/src/transLIN1.c | 65 +++--
TPmsm-1.2.0/TPmsm/src/transLIN2.c | 102 +++++----
TPmsm-1.2.0/TPmsm/src/transLS.c | 266 +++++++++++++-----------
TPmsm-1.2.0/TPmsm/src/transPAJ.c | 106 ++++++---
TPmsm-1.2.0/TPmsm/src/unique.c | 2
TPmsm-1.2.0/TPmsm/src/uniqueTP.c | 14 -
TPmsm-1.2.0/TPmsm/src/unload.c |only
TPmsm-1.2.0/TPmsm/src/wikmsurv.c | 2
TPmsm-1.2.0/TPmsm/src/window.c | 24 +-
TPmsm-1.2.0/TPmsm/src/wkmsurv.c | 2
91 files changed, 2398 insertions(+), 1751 deletions(-)
Title: Robust Variance Meta-regression
Diff between robumeta versions 1.3 dated 2014-08-20 and 1.4 dated 2014-12-09
Description: Functions for conducting robust variance estimation (RVE) meta-regression using both large and small sample RVE estimators under various weighting schemes. These methods are distribution free and provide valid point estimates, standard errors and hypothesis tests even when the degree and structure of dependence between effect sizes is unknown. Also included are functions for conducting sensitivity analyses under correlated effects weighting and producing RVE-based forest plots.
Author: Zachary Fisher and Elizabeth Tipton.
Maintainer: Zachary Fisher
DESCRIPTION | 10 +++++-----
MD5 | 4 ++--
R/robumeta.R | 2 +-
3 files changed, 8 insertions(+), 8 deletions(-)
Title: Bayesian Inference on Causal Genetic Variants using Affected
Sib-Pairs Data
Diff between ASPBay versions 1.0 dated 2014-12-02 and 1.1 dated 2014-12-09
Description: This package allows to make inference on the properties of causal genetic
variants in linkage disequilibrium with genotyped markers. In a first step,
we select a subset of variants using a score statistic for affected
sib-pairs. In a second step, on the selected subset, we make
inference on causal genetic variants in the considered region.
Author: Claire Dandine-Roulland
Maintainer: Claire Dandine-Roulland
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
R/ASP.Bayesian.R | 4 ++--
inst/doc/ASPBay.R | 6 +++---
inst/doc/ASPBay.Rnw | 6 +++---
inst/doc/ASPBay.pdf |binary
man/ASP.Bayesian.Rd | 7 ++++---
man/ASP.Score.Rd | 2 +-
man/ASP.Selection.Rd | 2 +-
man/Graphs.Bayesian.Rd | 2 +-
src/MH.cpp | 10 ++++++----
src/RcppExports.cpp | 7 ++++---
vignettes/ASPBay.Rnw | 6 +++---
13 files changed, 44 insertions(+), 40 deletions(-)
Title: Geographically weighted regression
Diff between spgwr versions 0.6-25 dated 2014-10-14 and 0.6-26 dated 2014-12-09
Description: Functions for computing geographically weighted
regressions based on work by Chris
Brunsdon, Martin Charlton and Stewart Fotheringham,
http://gwr.nuim.ie/
Author: Roger Bivand [cre, aut],
Danlin Yu [aut],
Tomoki Nakaya [ctb],
Miquel-Angel Garcia-Lopez [ctb]
Maintainer: Roger Bivand
ChangeLog | 10 ++++++++++
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
build/vignette.rds |binary
inst/ChangeLog | 10 ++++++++++
inst/doc/GWR.pdf |binary
man/gw.cov.Rd | 3 ++-
7 files changed, 32 insertions(+), 11 deletions(-)
Title: Robust Linear Regression with Compositional Data as Covariates
Diff between complmrob versions 0.5.6 dated 2014-12-03 and 0.5.8 dated 2014-12-09
Description: Provides functionality to perform robust regression
on compositional data. To get information on the distribution of the
estimates, various bootstrapping methods are implemented for the
compositional as well as for standard robust regression models, to provide
a direct comparison between them.
Author: David Kepplinger
Maintainer: David Kepplinger
complmrob-0.5.6/complmrob/man/isomLRinv.Rd |only
complmrob-0.5.8/complmrob/ChangeLog | 6 ++
complmrob-0.5.8/complmrob/DESCRIPTION | 10 +--
complmrob-0.5.8/complmrob/MD5 | 27 ++++-----
complmrob-0.5.8/complmrob/R/bootcoefs-methods.R | 15 +----
complmrob-0.5.8/complmrob/R/complmrob.R | 10 +--
complmrob-0.5.8/complmrob/R/confint-methods.R | 18 ++----
complmrob-0.5.8/complmrob/R/isomLR.R | 65 ++++++++++++++----------
complmrob-0.5.8/complmrob/R/plot-methods.R | 28 ++--------
complmrob-0.5.8/complmrob/man/bootcoefs.Rd | 15 +----
complmrob-0.5.8/complmrob/man/complmrob.Rd | 11 +---
complmrob-0.5.8/complmrob/man/confint.Rd | 18 ++----
complmrob-0.5.8/complmrob/man/isomLR.Rd | 33 ++++++++++--
complmrob-0.5.8/complmrob/man/plot.bootcoefs.Rd | 13 +---
complmrob-0.5.8/complmrob/man/plot.complmrob.Rd | 15 +----
15 files changed, 135 insertions(+), 149 deletions(-)
Title: Categorical Bayesian Network Inference
Diff between catnet versions 1.14.3 dated 2013-12-11 and 1.14.5 dated 2014-12-09
Description: A package that handles discrete Bayesian network models and provides inference using the frequentist approach
Author: Nikolay Balov, Peter Salzman
Maintainer: Nikolay Balov
catnet-1.14.3/catnet/man/as.igraph.Rd |only
catnet-1.14.5/catnet/DESCRIPTION | 8
catnet-1.14.5/catnet/MD5 | 55 ++--
catnet-1.14.5/catnet/NAMESPACE | 3
catnet-1.14.5/catnet/R/catnet.class.R | 9
catnet-1.14.5/catnet/R/catnet.dags.R | 11
catnet-1.14.5/catnet/R/catnet.plot.R | 36 --
catnet-1.14.5/catnet/R/graph2catnet.R | 75 ------
catnet-1.14.5/catnet/R/zzz.R | 16 -
catnet-1.14.5/catnet/build/vignette.rds |binary
catnet-1.14.5/catnet/inst/doc/catnet.Rnw | 2
catnet-1.14.5/catnet/inst/doc/catnet.pdf |binary
catnet-1.14.5/catnet/man/catnet-package.Rd | 27 --
catnet-1.14.5/catnet/src/cache.cpp | 15 -
catnet-1.14.5/catnet/src/cache.h | 9
catnet-1.14.5/catnet/src/catnet_class.h | 306 +++++++++++++++++-------
catnet-1.14.5/catnet/src/catnet_entropy.cpp | 349 ++++++++++++++--------------
catnet-1.14.5/catnet/src/catnet_rexport.cpp | 27 +-
catnet-1.14.5/catnet/src/catnet_search.h | 141 +++++++++--
catnet-1.14.5/catnet/src/catnet_search2.h | 110 ++++++--
catnet-1.14.5/catnet/src/problist.h | 72 +++--
catnet-1.14.5/catnet/src/pthread.cpp | 6
catnet-1.14.5/catnet/src/rcatnet.cpp | 207 +++++++++-------
catnet-1.14.5/catnet/src/rcatnet_hist.cpp | 26 +-
catnet-1.14.5/catnet/src/rcatnet_sa.cpp | 115 ++++++---
catnet-1.14.5/catnet/src/rcatnet_search.cpp | 17 +
catnet-1.14.5/catnet/src/search_params.h | 28 +-
catnet-1.14.5/catnet/src/utils.h | 33 +-
catnet-1.14.5/catnet/vignettes/catnet.Rnw | 2
29 files changed, 973 insertions(+), 732 deletions(-)
Title: Data Analysis Tool for Average Bioequivalence and
Bioavailability
Diff between bear versions 2.6.3 dated 2014-04-22 and 2.6.4 dated 2014-12-09
Description: An average bioequivalence (ABE) and bioavailability data
analysis tool including sample size estimation, noncompartmental
analysis (NCA), ANOVA (lm) for a standard RT/TR 2x2x2 crossover
design or a parallel study. And linear mixed effect model (lme
of nlme) for a 2-treatment, 2-sequence with 2 periods or more
(i.e. 2x2x3/2x2x4) replicate crossover design.
Author: Hsin-ya Lee, Yung-jin Lee
Maintainer: Yung-jin Lee
DESCRIPTION | 12 +++++++-----
MD5 | 46 +++++++++++++++++++++++-----------------------
NAMESPACE | 1 -
NEWS | 16 ++++++++++++++--
R/ARS.r | 12 +++++++++---
R/NCAoutput.r | 12 +++++++-----
R/NCAplot.r | 1 +
R/RepMIX.r | 12 +++++++-----
R/TTT.r | 8 ++++++++
R/TTTAIC.r | 4 ++++
R/TTTARS.r | 12 +++++++++++-
R/about.bear.r | 5 ++---
R/aic.r | 18 +++++++++++++-----
R/bear.setup.r | 3 ++-
R/create.products_sum.r | 2 +-
R/description_plot.r | 4 ++--
R/description_version.r | 19 ++++++++++++-------
R/go.r | 11 +++++------
R/go2menu.r | 1 +
R/helper.func.r | 10 ++++++----
R/icd.check.r | 2 ++
R/lme_lm.mod.r | 12 +++++++-----
R/logo_plot_desc.r | 10 +++++-----
R/zzz.R | 2 +-
24 files changed, 150 insertions(+), 85 deletions(-)
Title: Functions for Processing Minute-to-Minute Accelerometer Data
Diff between accelerometry versions 2.2.3 dated 2014-11-24 and 2.2.4 dated 2014-12-09
Description: A collection of functions that perform operations on time-series accelerometer data, such as identify non-wear time, flag minutes that are part of an activity bout, and find the maximum 10-minute average count value. The functions are generally very flexible, allowing for a variety of algorithms to be implemented. Most of the functions are written in C++ for efficiency.
Author: Dane R. Van Domelen
Maintainer: Dane R. Van Domelen
accelerometry-2.2.3/accelerometry/man/rle2_char.Rd |only
accelerometry-2.2.3/accelerometry/man/rle2_num.Rd |only
accelerometry-2.2.4/accelerometry/DESCRIPTION | 14 +++++-----
accelerometry-2.2.4/accelerometry/MD5 | 8 ++---
accelerometry-2.2.4/accelerometry/NAMESPACE | 4 ++
accelerometry-2.2.4/accelerometry/man/accelerometry-package.Rd | 6 ++--
6 files changed, 16 insertions(+), 16 deletions(-)
Title: Stability Selection with Error Control
Diff between stabs versions 0.1-0 dated 2014-10-02 and 0.5-0 dated 2014-12-09
Description: Resampling procedures to assess the stability of selected variables
with additional finite sample error control for high-dimensional variable
selection procedures such as Lasso or boosting
Author: Benjamin Hofner [aut, cre],
Torsten Hothorn [aut]
Maintainer: Benjamin Hofner
ChangeLog | 190 +++++++++++++++++++++++++++++++++++++---------
DESCRIPTION | 12 +-
MD5 | 29 ++++---
NAMESPACE | 13 ++-
R/fitfuns.R | 29 +++++++
R/helpers.R | 63 ---------------
R/methods.R | 51 ++++++++++--
R/stabsel.R | 127 ++++++++++++++++++++++++++++++
inst/CITATION |only
inst/NEWS.Rd | 43 ++++++++++
man/fitfuns.Rd | 6 +
man/parameters.Rd |only
man/plot.Rd | 5 +
man/run_stabsel.Rd |only
man/selected.Rd |only
man/stabsel.Rd | 15 +++
man/stabsel_parameters.Rd | 22 ++++-
man/stabsel_stabsel.Rd |only
18 files changed, 466 insertions(+), 139 deletions(-)
Title: Bayesian non-parametric dependent models for time-indexed
functional data
Diff between growfunctions versions 0.1 dated 2014-08-08 and 0.11 dated 2014-12-09
Description: Estimates a collection of time-indexed functions under
either of Gaussian process (GP) or intrinsic Gaussian Markov
random field (iGMRF) prior formulations where a Dirichlet process
mixture allows sub-groupings of the functions to share the same
covariance or precision parameters. The GP and iGMRF formulations
both support any number of additive covariance or precision terms,
respectively, expressing either or both of multiple trend and
seasonality.
Author: Terrance Savitsky
Maintainer: Terrance Savitsky
DESCRIPTION | 12 ++++++------
MD5 | 28 ++++++++++++++--------------
NEWS | 8 +++++++-
R/gmrfdpgrow.R | 2 +-
R/help.R | 6 +++---
man/growfunctions-package.Rd | 6 +++---
src/dpmix.cpp | 8 +++++---
src/dpmix_moves.cpp | 18 +++++++++---------
src/gp.cpp | 2 +-
src/gpbfix.cpp | 2 +-
src/gpdpbmix.cpp | 2 +-
src/gpdpmix.cpp | 2 +-
src/gpfix.cpp | 2 +-
src/growfunctions.h | 11 +++++++----
src/utility.cpp | 4 ++--
15 files changed, 62 insertions(+), 51 deletions(-)
Title: Microsoft Word, Microsoft Powerpoint and HTML Documents
Generation
Diff between ReporteRs versions 0.7.0 dated 2014-11-20 and 0.7.2 dated 2014-12-09
Description: Create Microsoft Word document (>=2007),
Microsoft Powerpoint document (>=2007) and HTML documents from R. There are
several features to let you format and present R outputs ; e.g. Editable
Vector Graphics, functions for complex tables reporting, reuse of corporate
template document (*.docx and *.pptx). You can use the package as a tool
for fast reporting and as a tool for reporting automation. The package does
not require any installation of Microsoft product to be able to write
Microsoft files (docx and pptx).
Author: David Gohel [aut, cre],
Bootstrap [ctb, cph] (Bootstrap development team),
jQuery [ctb, cph] (The jQuery Foundation),
Dmitry Baranovskiy [ctb, cph] (raphael javascript
libraries)
Maintainer: David Gohel
ReporteRs-0.7.0/ReporteRs/data |only
ReporteRs-0.7.0/ReporteRs/inst/bootstrap/js/g.raphael-min.js |only
ReporteRs-0.7.0/ReporteRs/man/pbc_summary.Rd |only
ReporteRs-0.7.2/ReporteRs/DESCRIPTION | 18
ReporteRs-0.7.2/ReporteRs/MD5 | 202 +++++------
ReporteRs-0.7.2/ReporteRs/NAMESPACE | 3
ReporteRs-0.7.2/ReporteRs/NEWS | 32 +
ReporteRs-0.7.2/ReporteRs/R/00_AllGeneric.R | 27 +
ReporteRs-0.7.2/ReporteRs/R/BootstrapMenu.R | 2
ReporteRs-0.7.2/ReporteRs/R/DropDownMenu.R | 2
ReporteRs-0.7.2/ReporteRs/R/FlexCell.R | 2
ReporteRs-0.7.2/ReporteRs/R/FlexRow.R | 4
ReporteRs-0.7.2/ReporteRs/R/FlexTable.R | 6
ReporteRs-0.7.2/ReporteRs/R/FlexTablePublicAPI.R | 26 -
ReporteRs-0.7.2/ReporteRs/R/FlexTable_theme.R | 4
ReporteRs-0.7.2/ReporteRs/R/Footnote.R | 2
ReporteRs-0.7.2/ReporteRs/R/Lists.R | 2
ReporteRs-0.7.2/ReporteRs/R/RScript.R | 4
ReporteRs-0.7.2/ReporteRs/R/ReporteRs.R | 22 -
ReporteRs-0.7.2/ReporteRs/R/Section.R | 4
ReporteRs-0.7.2/ReporteRs/R/add.plot.interactivity.R | 4
ReporteRs-0.7.2/ReporteRs/R/addBootstrapMenu.R | 2
ReporteRs-0.7.2/ReporteRs/R/addDate.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/addDocument.docx.R |only
ReporteRs-0.7.2/ReporteRs/R/addFlexTable.bsdoc.R | 2
ReporteRs-0.7.2/ReporteRs/R/addFlexTable.docx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addFlexTable.pptx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addFooter.bsdoc.R | 4
ReporteRs-0.7.2/ReporteRs/R/addFooter.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/addImage.bsdoc.R | 2
ReporteRs-0.7.2/ReporteRs/R/addImage.docx.R | 31 -
ReporteRs-0.7.2/ReporteRs/R/addImage.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/addLinkItem.R | 2
ReporteRs-0.7.2/ReporteRs/R/addMarkdown.bsdoc.R | 2
ReporteRs-0.7.2/ReporteRs/R/addMarkdown.docx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addMarkdown.pptx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addPageBreak.docx.R | 4
ReporteRs-0.7.2/ReporteRs/R/addPageNumber.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/addParagraph.bsdoc.R | 2
ReporteRs-0.7.2/ReporteRs/R/addParagraph.docx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addParagraph.pptx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addPlot.bsdoc.R | 2
ReporteRs-0.7.2/ReporteRs/R/addPlot.docx.R | 6
ReporteRs-0.7.2/ReporteRs/R/addPlot.pptx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addRScript.bsdoc.R | 2
ReporteRs-0.7.2/ReporteRs/R/addRScript.docx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addRScript.pptx.R | 2
ReporteRs-0.7.2/ReporteRs/R/addSlide.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/addSubtitle.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/addTOC.bsdoc.R |only
ReporteRs-0.7.2/ReporteRs/R/addTOC.docx.R | 23 -
ReporteRs-0.7.2/ReporteRs/R/addTitle.bsdoc.R | 25 +
ReporteRs-0.7.2/ReporteRs/R/addTitle.docx.R | 4
ReporteRs-0.7.2/ReporteRs/R/addTitle.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/as.html.FlexTable.R | 2
ReporteRs-0.7.2/ReporteRs/R/bsdoc.R | 7
ReporteRs-0.7.2/ReporteRs/R/cellProperties.R | 6
ReporteRs-0.7.2/ReporteRs/R/dim.docx.R | 4
ReporteRs-0.7.2/ReporteRs/R/dim.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/docx.R | 2
ReporteRs-0.7.2/ReporteRs/R/markdown.api.R | 4
ReporteRs-0.7.2/ReporteRs/R/parProperties.R | 4
ReporteRs-0.7.2/ReporteRs/R/pot.R | 4
ReporteRs-0.7.2/ReporteRs/R/pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/print.docx.R | 4
ReporteRs-0.7.2/ReporteRs/R/print.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/R/raphael.html.R | 2
ReporteRs-0.7.2/ReporteRs/R/set_of_pot.R | 4
ReporteRs-0.7.2/ReporteRs/R/slide.layouts.pptx.R | 2
ReporteRs-0.7.2/ReporteRs/R/styles.docx.R | 4
ReporteRs-0.7.2/ReporteRs/R/textProperties.R | 4
ReporteRs-0.7.2/ReporteRs/R/toc.options.R | 4
ReporteRs-0.7.2/ReporteRs/R/writeDoc.bsdoc.R | 2
ReporteRs-0.7.2/ReporteRs/R/writeDoc.docx.R | 4
ReporteRs-0.7.2/ReporteRs/R/writeDoc.pptx.R | 4
ReporteRs-0.7.2/ReporteRs/inst/COPYRIGHTS | 6
ReporteRs-0.7.2/ReporteRs/inst/java/ReporteRs-0.7.jar |binary
ReporteRs-0.7.2/ReporteRs/java/ReporteRs-0.7-src.jar |binary
ReporteRs-0.7.2/ReporteRs/man/FlexTable.Rd | 12
ReporteRs-0.7.2/ReporteRs/man/ReporteRs-package.Rd | 6
ReporteRs-0.7.2/ReporteRs/man/add.plot.interactivity.Rd | 2
ReporteRs-0.7.2/ReporteRs/man/addBootstrapMenu.Rd | 2
ReporteRs-0.7.2/ReporteRs/man/addDocument.Rd |only
ReporteRs-0.7.2/ReporteRs/man/addDocument.docx.Rd |only
ReporteRs-0.7.2/ReporteRs/man/addFlexTable.bsdoc.Rd | 5
ReporteRs-0.7.2/ReporteRs/man/addFlexTable.docx.Rd | 5
ReporteRs-0.7.2/ReporteRs/man/addFlexTable.pptx.Rd | 5
ReporteRs-0.7.2/ReporteRs/man/addFooterRow.Rd | 21 -
ReporteRs-0.7.2/ReporteRs/man/addHeaderRow.Rd | 89 ----
ReporteRs-0.7.2/ReporteRs/man/addImage.docx.Rd | 26 +
ReporteRs-0.7.2/ReporteRs/man/addPlot.bsdoc.Rd | 17
ReporteRs-0.7.2/ReporteRs/man/addPlot.docx.Rd | 17
ReporteRs-0.7.2/ReporteRs/man/addPlot.pptx.Rd | 17
ReporteRs-0.7.2/ReporteRs/man/addTOC.bsdoc.Rd |only
ReporteRs-0.7.2/ReporteRs/man/addTOC.docx.Rd | 19 -
ReporteRs-0.7.2/ReporteRs/man/addTitle.bsdoc.Rd | 5
ReporteRs-0.7.2/ReporteRs/man/bsdoc.Rd | 33 -
ReporteRs-0.7.2/ReporteRs/man/cellProperties.Rd | 4
ReporteRs-0.7.2/ReporteRs/man/docx-bookmark.Rd | 3
ReporteRs-0.7.2/ReporteRs/man/docx.Rd | 28 -
ReporteRs-0.7.2/ReporteRs/man/pptx.Rd | 20 -
ReporteRs-0.7.2/ReporteRs/man/raphael.html.Rd | 21 -
ReporteRs-0.7.2/ReporteRs/man/spanFlexTableColumns.Rd | 16
ReporteRs-0.7.2/ReporteRs/man/spanFlexTableRows.Rd | 17
ReporteRs-0.7.2/ReporteRs/src/RAPHAEL.cpp | 22 -
ReporteRs-0.7.2/ReporteRs/src/utils.cpp | 6
106 files changed, 538 insertions(+), 490 deletions(-)
Title: Functions to support the Multicriteria Decision Aiding process
Diff between MCDA versions 0.0.6 dated 2014-09-04 and 0.0.7 dated 2014-12-09
Description: MCDA, which stands for Multicriteria Decision Aiding, is an R package implementing functions which can be useful to support the analyst in the decision aiding process involving multiple, conflicting criteria. These functions include, but are not limited to, data pre-processing tools, preference elicitation procedures, aggregation functions, as well as post-processing techniques and data visualisation functions.
Author: Patrick Meyer, Sébastien Bigaret.
Maintainer: Patrick Meyer
DESCRIPTION | 14 +++++++-------
MD5 | 7 +++++--
NAMESPACE | 3 ++-
R/plotRadarPerformanceTable.R |only
man/plotRadarPerformanceTable.Rd |only
tests/plotRadarPerformanceTable.R |only
6 files changed, 14 insertions(+), 10 deletions(-)
Title: Isopam (Clustering)
Diff between isopam versions 0.9-12 dated 2012-11-01 and 0.9-13 dated 2014-12-09
Description: Isopam clustering algorithm and utilities.
Isopam optimizes clusters and optionally cluster numbers in
a brute force style and aims at an optimum separation
by all or some descriptors (typically species).
Author:
Sebastian Schmidtlein
Maintainer: Sebastian Schmidtlein
isopam-0.9-12/isopam/isopam-Ex.R |only
isopam-0.9-13/isopam/DESCRIPTION | 24 ++++++++++++------------
isopam-0.9-13/isopam/MD5 | 7 +++----
isopam-0.9-13/isopam/R/isopam.R | 18 ++++++++++++------
isopam-0.9-13/isopam/man/isopam.Rd | 6 ++++--
5 files changed, 31 insertions(+), 24 deletions(-)
Title: Global Soil Information Facilities
Diff between GSIF versions 0.4-2 dated 2014-11-10 and 0.4-3 dated 2014-12-09
Description: Global Soil Information Facilities - tools (standards and functions) and sample datasets for global soil mapping.
Author: Tomislav Hengl [cre, aut],
Bas Kempen [ctb],
Gerard Heuvelink [ctb],
Brendan Malone [ctb]
Maintainer: Tomislav Hengl
DESCRIPTION | 14 -
MD5 | 36 +--
NAMESPACE | 4
R/AAAA.R | 4
R/MaxEnt.R | 4
R/as.data.frame.R | 19 -
R/extract.list.R | 8
R/mpspline.R | 551 ++++++++++++++++++++++++++-------------------------
R/spline.krige.R | 13 -
R/spsample.prob.R |only
data/afsp.rda |binary
man/AWCPTF.Rd | 4
man/MaxEnt.Rd | 16 -
man/afsp.Rd | 5
man/as.data.frame.Rd | 2
man/extract.Rd | 7
man/isis.Rd | 5
man/mpspline.Rd | 131 ++++++------
man/spline.krige.Rd | 6
man/spsample.prob.Rd |only
20 files changed, 433 insertions(+), 396 deletions(-)
Title: Empirical Transition Matrix
Diff between etm versions 0.6-1 dated 2014-03-27 and 0.6-2 dated 2014-12-09
Description: Matrix of transition probabilities for any time-inhomogeneous multistate model with finite state space
Author: Arthur Allignol
Maintainer: Arthur Allignol
ChangeLog | 14 ++++++
DESCRIPTION | 9 +--
MD5 | 24 ++++++----
NAMESPACE | 5 +-
R/etm.R | 98 +++++++++++++++++++++++++++++++++++++++----
R/ggtransfo.etm.R |only
R/prepare.los.data.R |only
build/vignette.rds |binary
data/los.data.csv.gz |only
inst/doc/etmCIF_tutorial.pdf |binary
man/clos.Rd | 5 --
man/ggtransfo.Rd |only
man/los.data.Rd |only
man/prepare.los.data.Rd |only
tests/tests.etm.R | 7 +--
tests/tests.etm.Rout.save | 15 +++---
16 files changed, 138 insertions(+), 39 deletions(-)
Title: Conditional probability function of a competing event
Diff between Cprob versions 1.2.3 dated 2014-09-04 and 1.2.4 dated 2014-12-09
Description: Estimates the conditional probability function of a competing event, and fits, using the temporal process regression or the pseudo-value approach, a proportional-odds model to the conditional probability function
Author: Arthur Allignol
Maintainer: Arthur Allignol
ChangeLog | 8 ++
DESCRIPTION | 6 -
MD5 | 12 +--
R/print.pseudocpf.R | 2
R/summary.pseudocpf.R | 4 -
tests/tests.Cprob.R | 21 ++----
tests/tests.Cprob.Rout.save | 140 ++++----------------------------------------
7 files changed, 43 insertions(+), 150 deletions(-)
Title: Data Modelling with Additive Bayesian Networks
Diff between abn versions 0.83 dated 2013-03-07 and 0.85 dated 2014-12-09
Description: Bayesian network analysis is a form of probabilistic graphical models which derives from empirical data a directed acyclic graph, DAG, describing the dependency structure between random variables. An additive Bayesian network model consists of a form of a DAG where each node comprises a generalized linear model, GLM. ABN models are equivalent to Bayesian multivariate regression using graphical modelling, they generalises the usual multivariable regression, GLM, to multiple dependent variables. "abn" provides routines to help determine optimal Bayesian network models for a given data set, where these models are used to identify statistical dependencies in messy, complex data. The additive formulation of these models is equivalent to multivariate generalised linear modelling (including mixed models with iid random effects). The usual term to describe this model selection process is structure discovery. The core functionality is concerned with model selection - determining the most robust empirical model of data from interdependent variables. Laplace approximations are used to estimate goodness of fit metrics and model parameters, and wrappers are also included to the INLA package which can be obtained from http://www.r-inla.org. It is recommended the testing version, which can be downloaded by running: source("http://www.math.ntnu.no/inla/givemeINLA-testing.R"). A comprehensive set of documented case studies, numerical accuracy/quality assurance exercises, and additional documentation are available from the abn website.
Author: Fraser Ian Lewis [aut], Marta Pittavino [cre, ctb], Reinhard Furrer [ctb]
Maintainer: Marta Pittavino
abn-0.83/abn/R/fit_dag.R |only
abn-0.83/abn/TODO |only
abn-0.83/abn/src/Makevars.win |only
abn-0.85/abn/ChangeLog |only
abn-0.85/abn/DESCRIPTION | 36 ++--------
abn-0.85/abn/MD5 | 86 +++++++++++++++---------
abn-0.85/abn/NAMESPACE | 3
abn-0.85/abn/R/abn-internal.R | 14 +--
abn-0.85/abn/R/build_score_cache.R | 28 +++----
abn-0.85/abn/R/calc_node_inla_glm.R | 4 -
abn-0.85/abn/R/calc_node_inla_glmm.R | 2
abn-0.85/abn/R/fitabn.R |only
abn-0.85/abn/R/getmarginals.R | 27 +++----
abn-0.85/abn/R/mostprobable.R | 2
abn-0.85/abn/R/search_hillclimber.R | 14 +--
abn-0.85/abn/R/tographviz.R | 116 +++++++++++++++++----------------
abn-0.85/abn/build |only
abn-0.85/abn/cleanup |only
abn-0.85/abn/data/ex0data.RData |binary
abn-0.85/abn/data/ex1data.RData |binary
abn-0.85/abn/data/ex2data.RData |binary
abn-0.85/abn/data/ex3data.RData |binary
abn-0.85/abn/data/ex4data.RData |binary
abn-0.85/abn/data/ex5data.RData |binary
abn-0.85/abn/data/ex6data.RData |binary
abn-0.85/abn/data/ex7data.RData |binary
abn-0.85/abn/data/pigs1par.RData |only
abn-0.85/abn/data/var33.RData |only
abn-0.85/abn/inst |only
abn-0.85/abn/man/abninla-internal.Rd | 26 ++++---
abn-0.85/abn/man/build_score_cache.Rd | 9 +-
abn-0.85/abn/man/dag_ex0.Rd | 6 +
abn-0.85/abn/man/fitabn.Rd | 31 ++++----
abn-0.85/abn/man/mostprobable.Rd | 33 ++++-----
abn-0.85/abn/man/pigs.1par.rd |only
abn-0.85/abn/man/search_hillclimber.Rd | 43 +++++-------
abn-0.85/abn/man/tographviz.Rd | 26 ++++---
abn-0.85/abn/man/var33.rd |only
abn-0.85/abn/src/Makevars.in | 11 ++-
abn-0.85/abn/src/node_gaussian.c | 4 -
abn-0.85/abn/vignettes |only
41 files changed, 277 insertions(+), 244 deletions(-)
Title: Common R Scripts and Utilities Used by the Statnet Project
Software
Diff between statnet.common versions 3.1.1 dated 2013-11-28 and 3.2.2 dated 2014-12-09
More information about statnet.common at CRAN
Description: This package contains non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre]
Maintainer: Pavel N. Krivitsky
DESCRIPTION | 8 ++---
LICENSE | 4 +-
MD5 | 36 +++++++++++++-------------
R/cite.utilities.R | 9 ------
R/control.utilities.R | 14 ++--------
R/misc.utilities.R | 9 ------
R/startup.utilities.R | 59 ++++++++++++++++++++++++++++++++++++-------
R/string.utilities.R | 9 ------
inst |only
man/NVL.Rd | 9 ------
man/check.control.class.Rd | 9 ------
man/compress.data.frame.Rd | 9 ------
man/control.list.accessor.Rd |only
man/opttest.Rd | 9 ------
man/paste.and.Rd | 9 ------
man/print.control.list.Rd | 9 ------
man/set.control.class.Rd | 9 ------
man/sort.data.frame.Rd | 9 ------
man/statnet.cite.Rd | 9 ------
man/statnetStartupMessage.Rd | 9 ------
20 files changed, 79 insertions(+), 159 deletions(-)
Permanent link
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Diff between PrevMap versions 1.1.1 dated 2014-12-02 and 1.1.2 dated 2014-12-09
Description: It provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data. 'PrevMap' is
also an extension of the 'geoR' package which should be installed first
together with the 'maxLik', 'raster' and 'pdist' packages.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi
DESCRIPTION | 10 +++++-----
MD5 | 14 +++++++-------
R/foo.R | 35 ++++++++++++++++++++---------------
man/binomial.logistic.Bayes.Rd | 2 ++
man/linear.model.Bayes.Rd | 3 +++
man/linear.model.MLE.Rd | 3 +++
man/loglik.ci.Rd | 2 +-
man/shape.matern.Rd | 2 +-
8 files changed, 42 insertions(+), 29 deletions(-)
Title: Affinity Propagation Clustering
Diff between apcluster versions 1.4.0 dated 2014-12-01 and 1.4.1 dated 2014-12-09
Description: The apcluster package implements Frey's and Dueck's
Affinity Propagation clustering in R. The algorithms are
largely analogous to the Matlab code published by Frey and
Dueck. The package further provides leveraged affinity
propagation and an algorithm for exemplar-based agglomerative
clustering that can also be used to join clusters obtained
from affinity propagation. Various plotting functions are
available for analyzing clustering results.
Author: Ulrich Bodenhofer, Johannes Palme, Chrats Melkonian, Andreas Kothmeier
Maintainer: Ulrich Bodenhofer
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 3 +++
TODO | 2 ++
inst/doc/apcluster.pdf |binary
src/apclusterSparseC.cpp | 42 ++++++++++++++++++++++++++++--------------
6 files changed, 42 insertions(+), 23 deletions(-)
Title: R Bindings for ZeroMQ
Diff between rzmq versions 0.6.8 dated 2013-08-10 and 0.7.7 dated 2014-12-09
Description: Interface to the ZeroMQ lightweight messaging kernel (see
Author: Whit Armstrong
Maintainer: Whit Armstrong
rzmq-0.6.8/rzmq/README.rst |only
rzmq-0.7.7/rzmq/DESCRIPTION | 14 +
rzmq-0.7.7/rzmq/MD5 | 34 ++--
rzmq-0.7.7/rzmq/NAMESPACE | 9 +
rzmq-0.7.7/rzmq/R/rzmq.R | 43 +++++
rzmq-0.7.7/rzmq/inst |only
rzmq-0.7.7/rzmq/man/bind.socket.Rd | 2
rzmq-0.7.7/rzmq/man/connect.socket.Rd | 2
rzmq-0.7.7/rzmq/man/init.context.Rd | 2
rzmq-0.7.7/rzmq/man/poll.socket.Rd |only
rzmq-0.7.7/rzmq/man/receive.multipart.Rd |only
rzmq-0.7.7/rzmq/man/receive.socket.Rd | 23 ++-
rzmq-0.7.7/rzmq/man/send.multipart.Rd |only
rzmq-0.7.7/rzmq/man/send.socket.Rd | 2
rzmq-0.7.7/rzmq/man/socket.options.Rd | 7
rzmq-0.7.7/rzmq/man/zmq.error.Rd |only
rzmq-0.7.7/rzmq/src/Makevars | 4
rzmq-0.7.7/rzmq/src/cppzmq.h |only
rzmq-0.7.7/rzmq/src/interface.cpp | 225 ++++++++++++++++++++++++++++---
rzmq-0.7.7/rzmq/src/interface.h | 7
rzmq-0.7.7/rzmq/tests |only
21 files changed, 321 insertions(+), 53 deletions(-)
Title: Visualization of spatial and spatio-temporal objects in Google
Earth
Diff between plotKML versions 0.4-7 dated 2014-12-01 and 0.4-8 dated 2014-12-09
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules.
Author: Tomislav Hengl [cre, aut],
Pierre Roudier [ctb],
Dylan Beaudette [ctb],
Edzer Pebesma [ctb],
Michael Blaschek [ctb]
Maintainer: Tomislav Hengl
DESCRIPTION | 10 +++++-----
MD5 | 28 ++++++++++++++++------------
R/layer.SpatialPolygons.R | 3 ++-
build/vignette.rds |binary
data/datalist | 2 ++
data/fmd.rda |only
data/northcumbria.rda |only
demo/plotKML.R | 1 -
inst/doc/jss1079.R | 5 ++---
inst/doc/jss1079.Rnw | 5 ++---
inst/doc/jss1079.pdf |binary
man/fmd.Rd |only
man/layer.SpatialPolygons.Rd | 4 +++-
man/northcumbria.Rd |only
man/plotKML.Rd | 1 -
man/reproject.Rd | 2 +-
vignettes/jss1079.Rnw | 5 ++---
17 files changed, 35 insertions(+), 31 deletions(-)
Title: Routines for Exponential Power Distribution
Diff between normalp versions 0.6.9 dated 2012-09-03 and 0.7.0 dated 2014-12-09
Description: Collection of utilities referred to Exponential Power distribution,
also known as General Error Distribution (see Mineo, A.M. and Ruggieri, M. (2005), A software Tool for the Exponential Power Distribution: The normalp package. In Journal of Statistical Software, Vol. 12, Issue 4)
Author: Angelo M. Mineo
Maintainer: Angelo M. Mineo
normalp-0.6.9/normalp/R/normalp.R |only
normalp-0.6.9/normalp/index |only
normalp-0.6.9/normalp/title |only
normalp-0.7.0/normalp/DESCRIPTION | 17 +++++++++--------
normalp-0.7.0/normalp/MD5 | 23 +++++++++++++++++++----
normalp-0.7.0/normalp/R/dnormp.R |only
normalp-0.7.0/normalp/R/estimatep.R |only
normalp-0.7.0/normalp/R/graphnp.R |only
normalp-0.7.0/normalp/R/kurtosis.R |only
normalp-0.7.0/normalp/R/lmp.R |only
normalp-0.7.0/normalp/R/paramp.R |only
normalp-0.7.0/normalp/R/plot.lmp.R |only
normalp-0.7.0/normalp/R/plot.simul.lmp.R |only
normalp-0.7.0/normalp/R/plot.simul.mp.R |only
normalp-0.7.0/normalp/R/pnormp.R |only
normalp-0.7.0/normalp/R/qnormp.R |only
normalp-0.7.0/normalp/R/qqnormp.R |only
normalp-0.7.0/normalp/R/rnormp.R |only
normalp-0.7.0/normalp/R/simul.lmp.R |only
normalp-0.7.0/normalp/R/simul.mp.R |only
normalp-0.7.0/normalp/R/summary.lmp.R |only
normalp-0.7.0/normalp/R/summary.simul.lmp.R |only
normalp-0.7.0/normalp/man/normalp-package.Rd |only
23 files changed, 28 insertions(+), 12 deletions(-)
Title: Estimating Local Gaussian Parameters
Diff between localgauss versions 0.33 dated 2014-02-10 and 0.34 dated 2014-12-09
Description: Computational routines for estimating and visualizing local Gaussian parameters. Local Gaussian parameters are useful for characterizing and testing for non-linear dependence within bivariate data. See e.g. Tjostheim and Hufthammer, Local Gaussian correlation: A new measure of dependence, Journal of Econometrics, 2013, Volume 172 (1), pages 33-48.
Author: Tore Selland Kleppe
Maintainer: Tore Selland Kleppe
DESCRIPTION | 16 ++++++++--------
MD5 | 4 ++--
R/localgauss.R | 4 ++--
3 files changed, 12 insertions(+), 12 deletions(-)
Title: Searching for optimal clustering procedure for a data set
Diff between clusterSim versions 0.43-5 dated 2014-07-07 and 0.44-1 dated 2014-12-09
Description: GDM Distance,
Sokal-Michener Distance,
Bray-Curtis Distance,
Calinski-Harabasz Index,
G2 Index,
G3 Index,
Silhouette Index,
Krzanowski-Lai Index,
Hartigan Index,
Gap Index,
DB Index,
Data Normalization,
HINoV method,
Replication analysis for cluster validation,
Clustering with several algorithms, distances,
Symbolic interval distances,
Plot functions,
Random cluster generation,
Linear ordering methods,
Comparing partitions,
Spectral clustering,
Ordinal to metric scale transformation,
Untypical data generation.
Author: Marek Walesiak
Maintainer: Andrzej Dudek
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
R/pattern.GDM1.r | 2 +-
R/replication.Mod.r | 6 +++---
man/HINoV.Mod.rd | 2 +-
man/HINoV.Symbolic.rd | 2 +-
man/data.Normalization.rd | 2 +-
man/index.GAP.rd | 2 +-
man/replication.Mod.rd | 4 ++--
9 files changed, 22 insertions(+), 22 deletions(-)
Title: Type-specific Failure Rate and Hazard Rate on Competing Risks
Data
Diff between NPMLEcmprsk versions 1.0 dated 2013-08-09 and 2.0 dated 2014-12-09
Description: Given a failure type, the function computes covariate-specific probability of failure over time and covariate-specific conditional hazard rate based on possibly right-censored competing risk data. Specifically, it computes the non-parametric maximum-likelihood estimates of these quantities and their asymptotic variances in a semi-parametric mixture model for competing-risks data, as described in Chang et al. (2007a).
Author: Chung-Hsing Chen, I-Shou Chang and Chao A. Hsiung
Maintainer: Chung-Hsing Chen
NPMLEcmprsk-1.0/NPMLEcmprsk/R/NPMLEcmprsk.r |only
NPMLEcmprsk-1.0/NPMLEcmprsk/doc |only
NPMLEcmprsk-2.0/NPMLEcmprsk/DESCRIPTION | 14
NPMLEcmprsk-2.0/NPMLEcmprsk/MD5 | 11
NPMLEcmprsk-2.0/NPMLEcmprsk/NAMESPACE | 2
NPMLEcmprsk-2.0/NPMLEcmprsk/R/improved_CompetingRisk_Code_v10.1.r |only
NPMLEcmprsk-2.0/NPMLEcmprsk/man/NPMLEcmprsk.Rd | 148 ++++++----
7 files changed, 112 insertions(+), 63 deletions(-)
Title: Fit GLD Regression Model and GLD Quantile Regression Model to
Empirical Data
Diff between GLDreg versions 1.0 dated 2014-11-11 and 1.0.1 dated 2014-12-09
Description: Owing to the rich shapes of GLDs, GLD standard/quantile regression is a competitive flexible model compared to standard/quantile regression. The proposed method has some major advantages: 1) it provides a reference line which is very robust to outliers with the attractive property of zero mean residuals and 2) it gives a unified, elegant quantile regression model from the reference line with smooth regression coefficients across different quantiles. The goodness of fit of the proposed model can be assessed via QQ plots and the Kolmogorov-Smirnov test, to ensure the appropriateness of the statistical inference under consideration. Statistical distributions of coefficients of the GLD regression line are obtained using simulation, and interval estimates are obtained directly from simulated data.
Author: Steve Su, with contributions from: R core team for qqgld.default function.
Maintainer: Steve Su
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
NAMESPACE | 2 ++
man/GLDreg-package.Rd | 4 ++--
4 files changed, 12 insertions(+), 10 deletions(-)
More information about GeneticSubsetter at CRAN
Permanent link
Title: Create Cryptographic Hash Digests of R Objects
Diff between digest versions 0.6.4 dated 2013-12-03 and 0.6.5 dated 2014-12-09
Description: Implementation of a function 'digest()' for the creation
of hash digests of arbitrary R objects (using the md5, sha-1, sha-256,
crc32 and xxhash algorithms) permitting easy comparison of R language
objects, as well as a function 'hmac()' to create hash-based message
authentication code.
The md5 algorithm by Ron Rivest is specified in RFC 1321, the sha-1
and sha-256 algorithms are specified in FIPS-180-1 and FIPS-180-2,
and the crc32 algorithm is described in
ftp://ftp.rocksoft.com/cliens/rocksoft/papers/crc_v3.txt.
For md5, sha-1, sha-256 and aes, this package uses a small standalone
implementations that were provided by Christophe Devine. For crc32, code
from the zlib library is used. For sha-512, an implementation by Aaron
D. Gifford is used. For xxHash, the implementation by Yann Collet is used.
Please note that this package is not meant to be deployed for
cryptographic purposes for which more comprehensive (and widely
tested) libraries such as OpenSSL should be used.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 54 +++
DESCRIPTION | 22 -
MD5 | 25 -
NAMESPACE | 2
R/AES.R | 152 +++++-----
R/digest.R | 158 +++++-----
R/hmac.R | 54 ++-
README.md |only
man/digest.Rd | 68 +++-
man/hmac.Rd | 1
src/digest.c | 676 ++++++++++++++++++++++++---------------------
src/xxhash.c |only
src/xxhash.h |only
tests/digestTest.R | 34 ++
tests/digestTest.Rout.save | 55 +++
15 files changed, 783 insertions(+), 518 deletions(-)
Title: Cross-Validated Area Under the ROC Curve Confidence Intervals
Diff between cvAUC versions 1.0.2 dated 2014-11-17 and 1.1.0 dated 2014-12-09
Description: This package contains various tools for working with and evaluating cross-validated area under the ROC curve (AUC) estimators. The primary functions of the package are ci.cvAUC and ci.pooled.cvAUC, which report cross-validated AUC and compute confidence intervals for cross-validated AUC estimates based on influence curves for i.i.d. and pooled repeated measures data, respectively. One benefit to using influence curve based confidence intervals is that they require much less computation time than bootstrapping methods. The utility functions, AUC and cvAUC, are simple wrappers for functions from the ROCR package.
Author: Erin LeDell, Maya Petersen, Mark van der Laan
Maintainer: Erin LeDell
DESCRIPTION | 12 ++++---
MD5 | 21 ++++++-------
NAMESPACE | 1
NEWS | 10 +++++-
R/AUC.R | 3 +
R/ci.cvAUC.R | 74 +++++++++++++++++++++++++++-------------------
R/ci.pooled.cvAUC.R | 81 +++++++++++++++++++++++++++++----------------------
R/cvAUC.R | 14 +++++---
R/internals.R | 23 +++++++-------
R/zzz.R | 3 +
README.md |only
man/cvAUC-package.Rd | 8 ++---
12 files changed, 150 insertions(+), 100 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-04 1.1-9
2013-01-21 1.1-8
2012-05-06 1.1-5
2009-11-01 1.1-4
2009-04-16 1.1-3
2009-01-13 1.1-2
2008-01-19 1.0-9
2008-01-01 1.0-7