Title: Tools for Analyzing QTL Experiments
Diff between qtl versions 1.35-1 dated 2014-12-12 and 1.35-3 dated 2014-12-15
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Author: Karl W Broman
Maintainer: Karl W Broman
DESCRIPTION | 10 +++++-----
MD5 | 24 ++++++++++++------------
inst/INSTALL_ME.txt | 16 ++++++++--------
inst/STATUS.txt | 4 +++-
inst/doc/rqtltour.pdf |binary
man/scanonevar.Rd | 2 +-
src/hmm_bcsft.c | 20 ++++++++++----------
src/hmm_main.c | 16 ++++++++--------
src/lapackutil.c | 2 +-
src/mqmdatatypes.cpp | 2 +-
src/mqmmixture.cpp | 4 +---
src/mqmprob.cpp | 47 +++++++++++++++++++++++------------------------
src/simulate.c | 6 +++---
13 files changed, 76 insertions(+), 77 deletions(-)
Title: Hierarchical Exponential-Family Random Graph Models with Local
Dependence
Diff between hergm versions 1.3-11 dated 2013-12-01 and 2.0-0 dated 2014-12-15
Description: Estimate and simulate hierarchical exponential-family random graph models with local dependence.
Author: Michael Schweinberger
Maintainer: Michael Schweinberger
hergm-1.3-11/hergm/demo |only
hergm-1.3-11/hergm/man/hergm.dirichlet.Rd |only
hergm-2.0-0/hergm/DESCRIPTION | 20
hergm-2.0-0/hergm/MD5 | 103 +--
hergm-2.0-0/hergm/NAMESPACE | 4
hergm-2.0-0/hergm/R/hergm.R | 100 +--
hergm-2.0-0/hergm/R/hergm.gof.R |only
hergm-2.0-0/hergm/R/hergm.initialize.R |only
hergm-2.0-0/hergm/R/hergm.mcmc.R | 67 +-
hergm-2.0-0/hergm/R/hergm.misc.R | 9
hergm-2.0-0/hergm/R/hergm.multiple.R |only
hergm-2.0-0/hergm/R/hergm.permutation.wrapper.R | 2
hergm-2.0-0/hergm/R/hergm.plot.R |only
hergm-2.0-0/hergm/R/hergm.postprocess.R | 52 +
hergm-2.0-0/hergm/R/hergm.preprocess.R | 171 +++---
hergm-2.0-0/hergm/R/hergm.relabel.R | 71 ++
hergm-2.0-0/hergm/R/hergm.set.mcmc.R | 15
hergm-2.0-0/hergm/R/hergm.terms.R | 88 +--
hergm-2.0-0/hergm/R/hergm.wrapper.R | 11
hergm-2.0-0/hergm/R/zzz.R | 7
hergm-2.0-0/hergm/data/bali.RData |binary
hergm-2.0-0/hergm/data/sampson.RData |only
hergm-2.0-0/hergm/man/bali.Rd | 7
hergm-2.0-0/hergm/man/example.Rd | 9
hergm-2.0-0/hergm/man/hergm-internal.Rd | 16
hergm-2.0-0/hergm/man/hergm.Rd | 121 ++--
hergm-2.0-0/hergm/man/hergm.gof.Rd |only
hergm-2.0-0/hergm/man/hergm.plot.Rd |only
hergm-2.0-0/hergm/man/hergm.postprocess.Rd | 71 +-
hergm-2.0-0/hergm/man/hergm.terms.Rd | 69 +-
hergm-2.0-0/hergm/man/sampson.Rd |only
hergm-2.0-0/hergm/src/MCMC.c | 15
hergm-2.0-0/hergm/src/MCMC.h | 9
hergm-2.0-0/hergm/src/MHproposal.c | 9
hergm-2.0-0/hergm/src/MHproposal.h | 9
hergm-2.0-0/hergm/src/MHproposals.c | 20
hergm-2.0-0/hergm/src/MHproposals.h | 9
hergm-2.0-0/hergm/src/changestat.c | 9
hergm-2.0-0/hergm/src/changestat.h | 9
hergm-2.0-0/hergm/src/changestats.c | 164 +++++
hergm-2.0-0/hergm/src/changestats.h | 13
hergm-2.0-0/hergm/src/edgelist.c | 42 -
hergm-2.0-0/hergm/src/edgelist.h | 9
hergm-2.0-0/hergm/src/edgetree.c | 108 +--
hergm-2.0-0/hergm/src/edgetree.h | 26
hergm-2.0-0/hergm/src/h_ergm.c | 678 +++++++++++++-----------
hergm-2.0-0/hergm/src/h_ergm.h | 29 -
hergm-2.0-0/hergm/src/h_ergm_basics.c | 11
hergm-2.0-0/hergm/src/h_ergm_latent.c | 25
hergm-2.0-0/hergm/src/h_ergm_latent.h | 4
hergm-2.0-0/hergm/src/h_ergm_mcmc.c | 27
hergm-2.0-0/hergm/src/h_ergm_mcmc.h | 8
hergm-2.0-0/hergm/src/h_ergm_variational.c | 2
hergm-2.0-0/hergm/src/model.c | 9
hergm-2.0-0/hergm/src/model.h | 9
hergm-2.0-0/hergm/src/netstats.c | 9
hergm-2.0-0/hergm/src/netstats.h | 9
57 files changed, 1280 insertions(+), 1004 deletions(-)
Title: Global Optimization by Differential Evolution
Diff between DEoptim versions 2.2-2 dated 2013-04-20 and 2.2-3 dated 2014-12-15
Description: Implements the differential evolution algorithm for global optimization of a real-valued function of a real-valued parameter vector.
Author: David Ardia [aut],
Katharine Mullen [aut, cre],
Brian Peterson [aut],
Joshua Ulrich [aut],
Kris Boudt [ctb]
Maintainer: Katharine Mullen
DEoptim-2.2-2/DEoptim/COPYING |only
DEoptim-2.2-2/DEoptim/COPYRIGHTS |only
DEoptim-2.2-3/DEoptim/DESCRIPTION | 27 ++---
DEoptim-2.2-3/DEoptim/MD5 | 19 ++-
DEoptim-2.2-3/DEoptim/NEWS | 7 +
DEoptim-2.2-3/DEoptim/R/DEoptim.R | 49 +++++++---
DEoptim-2.2-3/DEoptim/THANKS | 5 -
DEoptim-2.2-3/DEoptim/build |only
DEoptim-2.2-3/DEoptim/man/DEoptim.Rd | 3
DEoptim-2.2-3/DEoptim/man/DEoptim.control.Rd | 4
DEoptim-2.2-3/DEoptim/src/de4_0.c | 21 ++--
DEoptim-2.2-3/DEoptim/vignettes/DEoptim.tex |only
DEoptim-2.2-3/DEoptim/vignettes/DEoptimPortfolioOptimization.tex |only
13 files changed, 86 insertions(+), 49 deletions(-)
Title: Actuarial functions
Diff between actuar versions 1.1-7 dated 2014-12-11 and 1.1-8 dated 2014-12-15
Description: Additional actuarial science functionality, mostly in the
fields of loss distributions, risk theory (including ruin theory),
simulation of compound hierarchical models and credibility theory.
The package also features 17 probability laws commonly used in
insurance, mostly heavy tailed distributions.
Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Maintainer: Vincent Goulet
actuar-1.1-7/actuar/inst/po/en@quot |only
actuar-1.1-8/actuar/DESCRIPTION | 8 +++----
actuar-1.1-8/actuar/MD5 | 28 ++++++++++++---------------
actuar-1.1-8/actuar/build/vignette.rds |binary
actuar-1.1-8/actuar/inst/NEWS.Rd | 11 ++++++++++
actuar-1.1-8/actuar/inst/doc/actuar.pdf |binary
actuar-1.1-8/actuar/inst/doc/coverage.pdf |binary
actuar-1.1-8/actuar/inst/doc/credibility.pdf |binary
actuar-1.1-8/actuar/inst/doc/lossdist.pdf |binary
actuar-1.1-8/actuar/inst/doc/risk.pdf |binary
actuar-1.1-8/actuar/inst/doc/simulation.pdf |binary
actuar-1.1-8/actuar/man/UniformSupp.Rd | 6 ++---
actuar-1.1-8/actuar/src/hierarc.c | 20 +++++++++----------
actuar-1.1-8/actuar/src/panjer.c | 2 -
actuar-1.1-8/actuar/src/unif.c | 4 +--
15 files changed, 44 insertions(+), 35 deletions(-)
Title: Group Iterative Multiple Model Estimation
Diff between gimme versions 0.1 dated 2014-12-12 and 0.1-1 dated 2014-12-15
Description: Automated identification and estimation of group- and
individual-level relations in time series data from within a structural
equation modeling framework.
Author: Stephanie Lane
Maintainer: Stephanie Lane
gimme-0.1-1/gimme/DESCRIPTION | 6 ++--
gimme-0.1-1/gimme/MD5 | 34 +++++++++++------------
gimme-0.1-1/gimme/R/gimme.R | 48 ++++++++++++++++++++++++---------
gimme-0.1-1/gimme/data/ts1.rda |only
gimme-0.1-1/gimme/data/ts2.rda |only
gimme-0.1-1/gimme/data/ts3.rda |only
gimme-0.1-1/gimme/data/ts4.rda |only
gimme-0.1-1/gimme/data/ts5.rda |only
gimme-0.1-1/gimme/man/aggregate.Rd | 23 ++++++++-------
gimme-0.1-1/gimme/man/gimme-package.Rd | 10 ++++--
gimme-0.1-1/gimme/man/gimme.Rd | 9 ++++--
gimme-0.1-1/gimme/man/indSEM.Rd | 7 ++++
gimme-0.1-1/gimme/man/semigimme.Rd | 8 ++++-
gimme-0.1-1/gimme/man/ts1.Rd |only
gimme-0.1-1/gimme/man/ts2.Rd |only
gimme-0.1-1/gimme/man/ts3.Rd |only
gimme-0.1-1/gimme/man/ts4.Rd |only
gimme-0.1-1/gimme/man/ts5.Rd |only
gimme-0.1/gimme/data/het1.rda |only
gimme-0.1/gimme/data/het2.rda |only
gimme-0.1/gimme/data/het3.rda |only
gimme-0.1/gimme/data/het4.rda |only
gimme-0.1/gimme/data/het5.rda |only
gimme-0.1/gimme/man/het1.Rd |only
gimme-0.1/gimme/man/het2.Rd |only
gimme-0.1/gimme/man/het3.Rd |only
gimme-0.1/gimme/man/het4.Rd |only
gimme-0.1/gimme/man/het5.Rd |only
28 files changed, 94 insertions(+), 51 deletions(-)
Title: Data Analysis for Therapeutic Drug Monitoring
Diff between tdm versions 3.0.2 dated 2014-05-14 and 3.0.3 dated 2014-12-15
Description: Therapeutic Drug Monitoring (TDM) is designed to
estimate individual pharmacokinetic parameters with one
or more drug serum/plasma concentrations obtained from
a single subject or multiple subjects using a Bayesian
inference porgram, JAGS (Just Another Gibbs Sampling;
a computer program for analysis of Bayesian hierarchical
models using Markov Chain Monte Carlo simulation),
interfaced with rjags. Besides, it also can calculate
a suggested dose based on the target drug concentration
(C ->D) or calculate a predicted drug concentration
with a given dose (D -> C).
Author: Miou-ting Chen, Yung-jin Lee
Maintainer: Yung-jin Lee
DESCRIPTION | 28 ++++++++++++++++------------
MD5 | 8 ++++----
NEWS | 12 +++++++++---
R/run.R | 2 +-
R/zzz.R | 8 +++-----
5 files changed, 33 insertions(+), 25 deletions(-)
Title: Approximate String Matching and String Distance Functions
Diff between stringdist versions 0.8.1 dated 2014-10-07 and 0.8.2 dated 2014-12-15
Description: Implements an approximate string matching version of R's native 'match' function. Can calculate various string distances based on edits (damerau-levenshtein, hamming, levenshtein, optimal sting alignment), qgrams (q-gram, cosine, jaccard distance) or heuristic metrics (jaro, jaro-winkler). An implementation of soundex is provided as well.
Author: Mark van der Loo [aut, cre],
Jan van der Laan [ctb]
Maintainer: Mark van der Loo
stringdist-0.8.1/stringdist/inst/tests |only
stringdist-0.8.1/stringdist/tests/testpackage.R |only
stringdist-0.8.2/stringdist/DESCRIPTION | 19 +++------
stringdist-0.8.2/stringdist/MD5 | 36 +++++++++---------
stringdist-0.8.2/stringdist/NAMESPACE | 2 -
stringdist-0.8.2/stringdist/NEWS | 5 ++
stringdist-0.8.2/stringdist/man/amatch.Rd | 3 +
stringdist-0.8.2/stringdist/man/phonetic.Rd | 3 +
stringdist-0.8.2/stringdist/man/printable_ascii.Rd | 3 +
stringdist-0.8.2/stringdist/man/qgrams.Rd | 7 ++-
stringdist-0.8.2/stringdist/man/stringdist-package.Rd | 3 +
stringdist-0.8.2/stringdist/man/stringdist.Rd | 3 +
stringdist-0.8.2/stringdist/src/dl.c | 9 ++--
stringdist-0.8.2/stringdist/src/osa.c | 7 ++-
stringdist-0.8.2/stringdist/src/qgram.c | 4 +-
stringdist-0.8.2/stringdist/src/soundex.c | 4 +-
stringdist-0.8.2/stringdist/tests/testthat |only
stringdist-0.8.2/stringdist/tests/testthat.R |only
18 files changed, 58 insertions(+), 50 deletions(-)
Title: Reads Mass Spectrometry Data in Bruker *flex Format
Diff between readBrukerFlexData versions 1.8.1 dated 2014-11-04 and 1.8.2 dated 2014-12-15
More information about readBrukerFlexData at CRAN
Description: Reads data files acquired by MALDI-TOF MS on Bruker Daltonics
machines of the *flex series.
Author: Sebastian Gibb [aut, cre]
Maintainer: Sebastian Gibb
DESCRIPTION | 8 +++----
MD5 | 42 +++++++++++++++++++-------------------
NAMESPACE | 2 -
NEWS | 5 ++++
R/package.R | 4 +--
R/readAcquFile-functions.R | 2 -
R/sampleName-functions.R | 17 +++++++++++----
man/changePrecision.Rd | 3 +-
man/cpSpecHpcMzXml.Rd | 3 +-
man/double2singlePrecision.Rd | 3 +-
man/extractHPCConstants.Rd | 3 +-
man/grepAcquDoubleValue.Rd | 3 +-
man/grepAcquValue.Rd | 3 +-
man/hpc.Rd | 3 +-
man/readAcquFile.Rd | 3 +-
man/readBrukerFlexData-defunct.Rd | 3 +-
man/readBrukerFlexData-package.Rd | 7 +++---
man/readBrukerFlexDir.Rd | 3 +-
man/readBrukerFlexFile.Rd | 3 +-
man/readFidFile.Rd | 3 +-
man/sampleName.Rd | 3 +-
man/tof2mass.Rd | 3 +-
22 files changed, 79 insertions(+), 50 deletions(-)
Permanent link
Title: Relevant Component Analysis for Supervised Distance Metric
Learning
Diff between RECA versions 1.0 dated 2014-08-16 and 1.1 dated 2014-12-15
Description: Relevant Component Analysis (RCA) tries to find a linear
transformation of the feature space such that the effect of irrelevant
variability is reduced in the transformed space.
Author: Nan Xiao
Maintainer: Nan Xiao
DESCRIPTION | 9 +++++----
MD5 | 11 ++++++-----
NAMESPACE | 2 +-
R/RECA-package.R | 2 +-
README.md |only
man/RECA-package.Rd | 4 ++--
man/rca.Rd | 2 +-
7 files changed, 16 insertions(+), 14 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Diff between packrat versions 0.4.1-1 dated 2014-09-03 and 0.4.2 dated 2014-12-15
Description: Packrat is a tool for managing the R packages your project depends
on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, JJ Allaire
Maintainer: Kevin Ushey
DESCRIPTION | 14 +-
MD5 | 131 ++++++++++++++------
NAMESPACE | 3
R/available-updates.R |only
R/bundle.R | 235 +++++++++++++++++++++++++++++++++++--
R/cache.R | 28 ++++
R/dependencies.R | 103 ++++++++++------
R/disable.R | 6
R/downloader.R | 29 ++++
R/hooks.R | 39 +++++-
R/install-local.R | 3
R/library-support.R | 40 ++++--
R/options.R | 9 +
R/packrat-mode.R | 11 +
R/packrat.R | 43 +++---
R/paths.R | 11 -
R/pkg.R | 26 +++-
R/recursive-package-dependencies.R | 24 +--
R/restore.R | 16 +-
R/snapshot.R | 66 ++++++++--
R/status.R | 16 --
R/update.R | 2
R/utils.R | 66 +++++++++-
inst/resources/init-rprofile.R | 2
inst/resources/init.R | 37 +++--
inst/rstudio |only
man/appDependencies.Rd |only
man/bundle.Rd | 29 +++-
man/clean.Rd | 2
man/disable.Rd | 2
man/init.Rd | 2
man/install.Rd | 2
man/install_github.Rd | 2
man/install_local.Rd | 10 -
man/migrate.Rd | 2
man/packify.Rd | 2
man/packrat-external.Rd | 2
man/packrat-mode.Rd | 2
man/packrat-options.Rd | 5
man/packrat.Rd | 2
man/restore.Rd | 2
man/search_path.Rd | 2
man/snapshot.Rd | 2
man/snapshotImpl.Rd |only
man/status.Rd | 2
man/unbundle.Rd | 2
man/unused_packages.Rd | 2
tests |only
48 files changed, 794 insertions(+), 242 deletions(-)
Title: Model-Based Boosting
Diff between mboost versions 2.4-0 dated 2014-10-02 and 2.4-1 dated 2014-12-15
Description: Functional gradient descent algorithm
(boosting) for optimizing general risk functions utilizing
component-wise (penalised) least squares estimates or regression
trees as base-learners for fitting generalized linear, additive
and interaction models to potentially high-dimensional data.
Author: Torsten Hothorn [aut, cre],
Peter Buehlmann [aut],
Thomas Kneib [aut],
Matthias Schmid [aut],
Benjamin Hofner [aut],
Fabian Sobotka [ctb],
Fabian Scheipl [ctb]
Maintainer: Torsten Hothorn
mboost-2.4-0/mboost/inst/AML_Bullinger.Rda |only
mboost-2.4-1/mboost/DESCRIPTION | 14 +-
mboost-2.4-1/mboost/MD5 | 45 ++++-----
mboost-2.4-1/mboost/NAMESPACE | 3
mboost-2.4-1/mboost/R/AAA.R | 3
mboost-2.4-1/mboost/R/crossvalidation.R | 47 +++++++--
mboost-2.4-1/mboost/R/methods.R | 5 -
mboost-2.4-1/mboost/R/stabsel.R | 4
mboost-2.4-1/mboost/build/vignette.rds |binary
mboost-2.4-1/mboost/inst/CITATION | 2
mboost-2.4-1/mboost/inst/NEWS.Rd | 88 +++++++++++-------
mboost-2.4-1/mboost/inst/doc/SurvivalEnsembles.R | 2
mboost-2.4-1/mboost/inst/doc/SurvivalEnsembles.Rnw | 2
mboost-2.4-1/mboost/inst/doc/SurvivalEnsembles.pdf |binary
mboost-2.4-1/mboost/inst/doc/mboost.pdf |binary
mboost-2.4-1/mboost/inst/doc/mboost_illustrations.pdf |binary
mboost-2.4-1/mboost/inst/doc/mboost_tutorial.pdf |binary
mboost-2.4-1/mboost/man/Family.Rd | 10 +-
mboost-2.4-1/mboost/man/baselearners.Rd | 7 -
mboost-2.4-1/mboost/man/confint.Rd | 4
mboost-2.4-1/mboost/man/cvrisk.Rd | 10 +-
mboost-2.4-1/mboost/man/mboost_package.Rd | 14 +-
mboost-2.4-1/mboost/man/stabsel.Rd | 8 +
mboost-2.4-1/mboost/vignettes/SurvivalEnsembles.Rnw | 2
24 files changed, 172 insertions(+), 98 deletions(-)
Title: Financial Instrument Model Infrastructure for R
Diff between FinancialInstrument versions 1.1 dated 2012-12-12 and 1.2.0 dated 2014-12-15
More information about FinancialInstrument at CRAN
Description: Infrastructure for defining meta-data and
relationships for financial instruments.
Author: Peter Carl, Brian G. Peterson, Garrett See
Maintainer: Garrett See
FinancialInstrument-1.1/FinancialInstrument/inst/parser/download.pitrader.R |only
FinancialInstrument-1.2.0/FinancialInstrument/DESCRIPTION | 35
FinancialInstrument-1.2.0/FinancialInstrument/MD5 | 201 ++--
FinancialInstrument-1.2.0/FinancialInstrument/NAMESPACE | 115 +-
FinancialInstrument-1.2.0/FinancialInstrument/NEWS | 73 +
FinancialInstrument-1.2.0/FinancialInstrument/R/CompareInstrumentFiles.R | 6
FinancialInstrument-1.2.0/FinancialInstrument/R/FinancialInstrument-package.R | 77 +
FinancialInstrument-1.2.0/FinancialInstrument/R/all.equal.instrument.R | 5
FinancialInstrument-1.2.0/FinancialInstrument/R/buildSpread.R | 30
FinancialInstrument-1.2.0/FinancialInstrument/R/build_symbols.R | 410 +++++-----
FinancialInstrument-1.2.0/FinancialInstrument/R/expires.R | 14
FinancialInstrument-1.2.0/FinancialInstrument/R/format_id.R | 4
FinancialInstrument-1.2.0/FinancialInstrument/R/instrument.R | 303 +++++--
FinancialInstrument-1.2.0/FinancialInstrument/R/load.instruments.R | 138 +--
FinancialInstrument-1.2.0/FinancialInstrument/R/ls_by_currency.R | 6
FinancialInstrument-1.2.0/FinancialInstrument/R/ls_by_expiry.R | 6
FinancialInstrument-1.2.0/FinancialInstrument/R/ls_expiries.R | 4
FinancialInstrument-1.2.0/FinancialInstrument/R/ls_instruments.R | 80 -
FinancialInstrument-1.2.0/FinancialInstrument/R/ls_instruments_by.R | 4
FinancialInstrument-1.2.0/FinancialInstrument/R/ls_strikes.R | 6
FinancialInstrument-1.2.0/FinancialInstrument/R/ls_underlyings.R | 4
FinancialInstrument-1.2.0/FinancialInstrument/R/parse_id.R | 8
FinancialInstrument-1.2.0/FinancialInstrument/R/redenominate.R | 18
FinancialInstrument-1.2.0/FinancialInstrument/R/saveInstruments.R | 18
FinancialInstrument-1.2.0/FinancialInstrument/R/synthetic.R | 115 +-
FinancialInstrument-1.2.0/FinancialInstrument/R/update_instruments.morningstar.R | 6
FinancialInstrument-1.2.0/FinancialInstrument/R/update_instruments.yahoo.R | 8
FinancialInstrument-1.2.0/FinancialInstrument/inst/THANKS |only
FinancialInstrument-1.2.0/FinancialInstrument/inst/parser/download.TrueFX.R | 23
FinancialInstrument-1.2.0/FinancialInstrument/inst/parser/download.tblox.R | 2
FinancialInstrument-1.2.0/FinancialInstrument/inst/parser/parse.SP500TR.R | 5
FinancialInstrument-1.2.0/FinancialInstrument/inst/tests |only
FinancialInstrument-1.2.0/FinancialInstrument/man/C2M.Rd | 22
FinancialInstrument-1.2.0/FinancialInstrument/man/CompareInstrumentFiles.Rd | 42 -
FinancialInstrument-1.2.0/FinancialInstrument/man/FinancialInstrument-package.Rd | 237 ++---
FinancialInstrument-1.2.0/FinancialInstrument/man/FindCommonInstrumentAttributes.Rd | 23
FinancialInstrument-1.2.0/FinancialInstrument/man/Notionalize.Rd | 39
FinancialInstrument-1.2.0/FinancialInstrument/man/Tick2Sec.Rd | 84 --
FinancialInstrument-1.2.0/FinancialInstrument/man/add.defined.by.Rd | 50 -
FinancialInstrument-1.2.0/FinancialInstrument/man/add.identifier.Rd | 19
FinancialInstrument-1.2.0/FinancialInstrument/man/all.equal.instrument.Rd | 35
FinancialInstrument-1.2.0/FinancialInstrument/man/buildHierarchy.Rd | 24
FinancialInstrument-1.2.0/FinancialInstrument/man/buildRatio.Rd | 58 -
FinancialInstrument-1.2.0/FinancialInstrument/man/buildSpread.Rd | 72 -
FinancialInstrument-1.2.0/FinancialInstrument/man/build_series_symbols.Rd | 36
FinancialInstrument-1.2.0/FinancialInstrument/man/build_spread_symbols.Rd | 84 --
FinancialInstrument-1.2.0/FinancialInstrument/man/currencies.Rd | 5
FinancialInstrument-1.2.0/FinancialInstrument/man/exchange_rate.Rd | 62 -
FinancialInstrument-1.2.0/FinancialInstrument/man/expires.Rd | 51 -
FinancialInstrument-1.2.0/FinancialInstrument/man/expires.character.Rd | 43 -
FinancialInstrument-1.2.0/FinancialInstrument/man/expires.instrument.Rd | 36
FinancialInstrument-1.2.0/FinancialInstrument/man/expires.spread.Rd | 35
FinancialInstrument-1.2.0/FinancialInstrument/man/expires.xts.Rd | 32
FinancialInstrument-1.2.0/FinancialInstrument/man/find.instrument.Rd | 57 -
FinancialInstrument-1.2.0/FinancialInstrument/man/fn_SpreadBuilder.Rd | 140 +--
FinancialInstrument-1.2.0/FinancialInstrument/man/formatSpreadPrice.Rd | 22
FinancialInstrument-1.2.0/FinancialInstrument/man/format_id.Rd | 45 -
FinancialInstrument-1.2.0/FinancialInstrument/man/getInstrument.Rd | 40
FinancialInstrument-1.2.0/FinancialInstrument/man/getSymbols.FI.Rd | 134 +--
FinancialInstrument-1.2.0/FinancialInstrument/man/get_rate.Rd | 19
FinancialInstrument-1.2.0/FinancialInstrument/man/instrument.Rd | 225 ++---
FinancialInstrument-1.2.0/FinancialInstrument/man/instrument.auto.Rd | 109 +-
FinancialInstrument-1.2.0/FinancialInstrument/man/instrument.table.Rd | 34
FinancialInstrument-1.2.0/FinancialInstrument/man/instrument_attr.Rd | 63 -
FinancialInstrument-1.2.0/FinancialInstrument/man/is.currency.Rd | 7
FinancialInstrument-1.2.0/FinancialInstrument/man/is.currency.name.Rd | 10
FinancialInstrument-1.2.0/FinancialInstrument/man/is.instrument.Rd | 7
FinancialInstrument-1.2.0/FinancialInstrument/man/is.instrument.name.Rd | 12
FinancialInstrument-1.2.0/FinancialInstrument/man/load.instruments.Rd | 77 -
FinancialInstrument-1.2.0/FinancialInstrument/man/ls_by_currency.Rd | 72 -
FinancialInstrument-1.2.0/FinancialInstrument/man/ls_by_expiry.Rd | 38
FinancialInstrument-1.2.0/FinancialInstrument/man/ls_expiries.Rd | 50 -
FinancialInstrument-1.2.0/FinancialInstrument/man/ls_instruments.Rd | 163 +--
FinancialInstrument-1.2.0/FinancialInstrument/man/ls_instruments_by.Rd | 38
FinancialInstrument-1.2.0/FinancialInstrument/man/ls_strikes.Rd | 20
FinancialInstrument-1.2.0/FinancialInstrument/man/ls_underlyings.Rd | 25
FinancialInstrument-1.2.0/FinancialInstrument/man/make_spread_id.Rd | 32
FinancialInstrument-1.2.0/FinancialInstrument/man/month_cycle2numeric.Rd | 27
FinancialInstrument-1.2.0/FinancialInstrument/man/next.future_id.Rd | 71 -
FinancialInstrument-1.2.0/FinancialInstrument/man/option_series.yahoo.Rd | 60 -
FinancialInstrument-1.2.0/FinancialInstrument/man/parse_id.Rd | 47 -
FinancialInstrument-1.2.0/FinancialInstrument/man/parse_suffix.Rd | 61 -
FinancialInstrument-1.2.0/FinancialInstrument/man/print.id.list.Rd | 5
FinancialInstrument-1.2.0/FinancialInstrument/man/print.instrument.Rd | 7
FinancialInstrument-1.2.0/FinancialInstrument/man/print.suffix.list.Rd | 5
FinancialInstrument-1.2.0/FinancialInstrument/man/redenominate.Rd | 57 -
FinancialInstrument-1.2.0/FinancialInstrument/man/root_contracts.Rd | 5
FinancialInstrument-1.2.0/FinancialInstrument/man/saveInstruments.Rd | 65 -
FinancialInstrument-1.2.0/FinancialInstrument/man/saveSymbols.days.Rd | 40
FinancialInstrument-1.2.0/FinancialInstrument/man/series_instrument.Rd | 106 +-
FinancialInstrument-1.2.0/FinancialInstrument/man/setSymbolLookup.FI.Rd | 70 -
FinancialInstrument-1.2.0/FinancialInstrument/man/sort.instrument.Rd | 8
FinancialInstrument-1.2.0/FinancialInstrument/man/sort_ids.Rd | 36
FinancialInstrument-1.2.0/FinancialInstrument/man/synthetic.instrument.Rd | 164 +---
FinancialInstrument-1.2.0/FinancialInstrument/man/to_daily.Rd | 15
FinancialInstrument-1.2.0/FinancialInstrument/man/update_instruments.iShares.Rd | 41 -
FinancialInstrument-1.2.0/FinancialInstrument/man/update_instruments.instrument.Rd | 73 -
FinancialInstrument-1.2.0/FinancialInstrument/man/update_instruments.masterDATA.Rd | 83 --
FinancialInstrument-1.2.0/FinancialInstrument/man/update_instruments.morningstar.Rd | 26
FinancialInstrument-1.2.0/FinancialInstrument/man/update_instruments.yahoo.Rd | 49 -
FinancialInstrument-1.2.0/FinancialInstrument/man/volep.Rd | 11
FinancialInstrument-1.2.0/FinancialInstrument/tests |only
102 files changed, 2697 insertions(+), 2687 deletions(-)
Permanent link
Title: Plotting ggplot2 graphics in an XKCD style
Diff between xkcd versions 0.0.3 dated 2014-03-05 and 0.0.4 dated 2014-12-15
Description: This package allows the representation of ggplot2 graphs using the
XKCD style.
Author: Emilio Torres-Manzanera
Maintainer: Emilio Torres-Manzanera
xkcd-0.0.3/xkcd/R/createdefaultmapping.r |only
xkcd-0.0.3/xkcd/R/doforeachrow.r |only
xkcd-0.0.3/xkcd/R/mappingjoin.r |only
xkcd-0.0.3/xkcd/R/pointscircunference.r |only
xkcd-0.0.3/xkcd/R/pointssegment.r |only
xkcd-0.0.3/xkcd/R/theme_xkcd.r |only
xkcd-0.0.3/xkcd/R/xkcdaxis.r |only
xkcd-0.0.3/xkcd/R/xkcdline.r |only
xkcd-0.0.3/xkcd/R/xkcdman.r |only
xkcd-0.0.3/xkcd/R/xkcdrect.r |only
xkcd-0.0.3/xkcd/man/createdefaultmappinganddata.Rd |only
xkcd-0.0.3/xkcd/man/doforeachrow.Rd |only
xkcd-0.0.3/xkcd/man/mappingjoin.Rd |only
xkcd-0.0.3/xkcd/man/pointscircunference.Rd |only
xkcd-0.0.3/xkcd/man/pointssegment.Rd |only
xkcd-0.0.4/xkcd/DESCRIPTION | 26
xkcd-0.0.4/xkcd/MD5 | 83 -
xkcd-0.0.4/xkcd/NAMESPACE | 13
xkcd-0.0.4/xkcd/NEWS |only
xkcd-0.0.4/xkcd/R/theme_xkcd.R |only
xkcd-0.0.4/xkcd/R/xkcd-package.R |only
xkcd-0.0.4/xkcd/R/xkcdaxis.R |only
xkcd-0.0.4/xkcd/R/xkcdline.R |only
xkcd-0.0.4/xkcd/R/xkcdman.R |only
xkcd-0.0.4/xkcd/R/xkcdrect.R |only
xkcd-0.0.4/xkcd/R/zzz.R |only
xkcd-0.0.4/xkcd/build/vignette.rds |binary
xkcd-0.0.4/xkcd/inst/doc/xkcd-intro.R | 744 ++++++-----
xkcd-0.0.4/xkcd/inst/doc/xkcd-intro.Rnw | 1123 ++++++++++--------
xkcd-0.0.4/xkcd/inst/doc/xkcd-intro.pdf |binary
xkcd-0.0.4/xkcd/man/theme_xkcd.Rd | 56
xkcd-0.0.4/xkcd/man/xkcd-package.Rd | 49
xkcd-0.0.4/xkcd/man/xkcdaxis.Rd | 34
xkcd-0.0.4/xkcd/man/xkcdline.Rd | 77 -
xkcd-0.0.4/xkcd/man/xkcdman.Rd | 93 -
xkcd-0.0.4/xkcd/man/xkcdrect.Rd | 67 -
xkcd-0.0.4/xkcd/vignettes/article-ref.bib |only
xkcd-0.0.4/xkcd/vignettes/gr1.pdf |only
xkcd-0.0.4/xkcd/vignettes/gr1.png |only
xkcd-0.0.4/xkcd/vignettes/graxis.png |only
xkcd-0.0.4/xkcd/vignettes/grbar.png |only
xkcd-0.0.4/xkcd/vignettes/grcaritas.png |only
xkcd-0.0.4/xkcd/vignettes/grfonts.png |only
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xkcd-0.0.4/xkcd/vignettes/grhomosapiens.png |only
xkcd-0.0.4/xkcd/vignettes/grlatex.png |only
xkcd-0.0.4/xkcd/vignettes/grmathematica.png |only
xkcd-0.0.4/xkcd/vignettes/grmotherday.png |only
xkcd-0.0.4/xkcd/vignettes/grnofonts.png |only
xkcd-0.0.4/xkcd/vignettes/grpython.png |only
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xkcd-0.0.4/xkcd/vignettes/grsevan.png |only
xkcd-0.0.4/xkcd/vignettes/grstickfigure.png |only
xkcd-0.0.4/xkcd/vignettes/grtwo.png |only
xkcd-0.0.4/xkcd/vignettes/jsslogo.jpg |only
xkcd-0.0.4/xkcd/vignettes/xkcd-intro-008.png |only
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xkcd-0.0.4/xkcd/vignettes/xkcd-intro-motherday.png |only
xkcd-0.0.4/xkcd/vignettes/xkcd-intro-twoman.png |only
xkcd-0.0.4/xkcd/vignettes/xkcd-intro.Rnw | 1123 ++++++++++--------
71 files changed, 1875 insertions(+), 1613 deletions(-)
Title: Calculate Indices of Dynamic Interaction for Wildlife Telemetry
Data
Diff between wildlifeDI versions 0.1 dated 2014-08-18 and 0.2 dated 2014-12-15
Description: Dynamic interaction refers to spatial-temporal associations in the
movements of two (or more) animals. This package provides tools for
calculating a suite of indices used for quantifying dynamic interaction
with wildlife telemetry data. For more information on each of the methods
employed see the references within. The package draws heavily on the
classes and methods developed in the 'adehabitat' packages.
Author: Jed Long
Maintainer: Jed Long
DESCRIPTION | 10 ++---
MD5 | 38 +++++++++++--------
NAMESPACE | 3 +
NEWS | 9 ++++
R/Cs.r | 4 +-
R/IAB.R |only
R/Prox.R | 2 -
R/checkTO.R |only
R/contacts.r |only
R/deer.r | 2 -
R/wildlifeDI-package.r | 16 +++++---
build/vignette.rds |binary
inst/doc/wildlifeDI-vignette.R | 14 +++++++
inst/doc/wildlifeDI-vignette.Rnw | 76 +++++++++++++++++++++++++++++++-------
inst/doc/wildlifeDI-vignette.pdf |binary
man/Cs.Rd | 4 +-
man/IAB.Rd |only
man/Prox.Rd | 2 -
man/checkTO.Rd |only
man/contacts.Rd |only
man/deer.Rd | 2 -
man/wildlifeDI-package.Rd | 13 +++++-
vignettes/wildlifeDI-vignette.Rnw | 76 +++++++++++++++++++++++++++++++-------
23 files changed, 206 insertions(+), 65 deletions(-)
Title: Quantitative Financial Modelling Framework
Diff between quantmod versions 0.4-2 dated 2014-10-08 and 0.4-3 dated 2014-12-15
Description: Specify, build, trade, and analyse quantitative financial trading strategies
Author: Jeffrey A. Ryan
Maintainer: Joshua M. Ulrich
quantmod-0.4-2/quantmod/WISHLIST |only
quantmod-0.4-3/quantmod/DESCRIPTION | 21 --
quantmod-0.4-3/quantmod/MD5 | 79 ++++----
quantmod-0.4-3/quantmod/NAMESPACE | 25 +-
quantmod-0.4-3/quantmod/R/Defaults.R |only
quantmod-0.4-3/quantmod/R/TA.R | 20 +-
quantmod-0.4-3/quantmod/R/addAroon.R | 36 ++--
quantmod-0.4-3/quantmod/R/addCLV.R | 21 +-
quantmod-0.4-3/quantmod/R/addCMF.R | 10 -
quantmod-0.4-3/quantmod/R/addCMO.R | 11 -
quantmod-0.4-3/quantmod/R/addChaikin.R | 41 ++--
quantmod-0.4-3/quantmod/R/addEMV.R | 25 +-
quantmod-0.4-3/quantmod/R/addKST.R | 23 +-
quantmod-0.4-3/quantmod/R/addMFI.R | 18 +-
quantmod-0.4-3/quantmod/R/addOBV.R | 21 +-
quantmod-0.4-3/quantmod/R/addSMI.R | 19 +-
quantmod-0.4-3/quantmod/R/addTA.R | 204 ++++++++++++-----------
quantmod-0.4-3/quantmod/R/addTDI.R | 18 +-
quantmod-0.4-3/quantmod/R/addVolatility.R | 18 +-
quantmod-0.4-3/quantmod/R/addWPR.R | 11 -
quantmod-0.4-3/quantmod/R/addZigZag.R | 22 +-
quantmod-0.4-3/quantmod/R/add_Last.R | 10 -
quantmod-0.4-3/quantmod/R/adjustOHLC.R | 4
quantmod-0.4-3/quantmod/R/chartSeries.R | 2
quantmod-0.4-3/quantmod/R/chart_Series.R | 120 ++++++-------
quantmod-0.4-3/quantmod/R/getFinancials.R | 4
quantmod-0.4-3/quantmod/R/getOptionChain.R | 4
quantmod-0.4-3/quantmod/R/getSplits.R | 24 +-
quantmod-0.4-3/quantmod/R/getSymbols.R | 127 +++++++-------
quantmod-0.4-3/quantmod/R/getSymbols.skeleton.R | 9 -
quantmod-0.4-3/quantmod/R/newTA.R | 22 +-
quantmod-0.4-3/quantmod/R/peak.R | 8
quantmod-0.4-3/quantmod/R/reChart.R | 36 ++--
quantmod-0.4-3/quantmod/man/Defaults.Rd |only
quantmod-0.4-3/quantmod/man/Delt.Rd | 2
quantmod-0.4-3/quantmod/man/getSymbols.FRED.Rd | 2
quantmod-0.4-3/quantmod/man/getSymbols.MySQL.Rd | 10 +
quantmod-0.4-3/quantmod/man/getSymbols.Rd | 12 +
quantmod-0.4-3/quantmod/man/getSymbols.google.Rd | 2
quantmod-0.4-3/quantmod/man/getSymbols.rda.Rd | 2
quantmod-0.4-3/quantmod/man/getSymbols.yahoo.Rd | 2
quantmod-0.4-3/quantmod/man/quantmod-package.Rd | 12 -
42 files changed, 561 insertions(+), 496 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Diff between mirtCAT versions 0.2 dated 2014-10-15 and 0.3 dated 2014-12-15
Description: Provides tools to generate an HTML interface for creating adaptive
and non-adaptive educational and psychological tests using the shiny
package. Suitable for applying unidimensional and multidimensional
computerized adaptive tests using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers
DESCRIPTION | 8 ++--
MD5 | 28 +++++++--------
NEWS | 17 +++++++++
R/DesignClass.R | 6 +--
R/FI.R | 15 ++------
R/PersonClass.R | 29 +++++++++-------
R/TestClass.R | 17 +++++----
R/findNextCATItem.R | 4 ++
R/mirtCAT.R | 26 +++++++++-----
R/selection_criteria.R | 13 +++++++
R/server.R | 5 ++
build/vignette.rds |binary
man/mirtCAT.Rd | 25 +++++++++-----
tests/tests/test-mirtCAT_multi.R | 65 +++++++++++++++++++------------------
tests/tests/test-mirtCAT_ordered.R | 48 +++++++++++++++++++++++++++
15 files changed, 206 insertions(+), 100 deletions(-)
Title: Multidimensional Item Response Theory
Diff between mirt versions 1.6.1 dated 2014-10-10 and 1.7 dated 2014-12-15
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm. Exploratory and confirmatory models can be
estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item functioning and modelling item and person
covariates.
Author: Phil Chalmers [aut, cre, cph],
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb]
Maintainer: Phil Chalmers
mirt-1.6.1/mirt/R/Confirmatory-methods.R |only
mirt-1.6.1/mirt/R/Exploratory-methods.R |only
mirt-1.6.1/mirt/man/ConfirmatoryClass-class.Rd |only
mirt-1.6.1/mirt/man/ExploratoryClass-class.Rd |only
mirt-1.7/mirt/DESCRIPTION | 6
mirt-1.7/mirt/MD5 | 212 +++++------
mirt-1.7/mirt/NAMESPACE | 6
mirt-1.7/mirt/NEWS | 63 +++
mirt-1.7/mirt/R/00-classes.R | 132 +-----
mirt-1.7/mirt/R/01-itemtypes.R | 24 +
mirt-1.7/mirt/R/02-item_methods.R | 53 --
mirt-1.7/mirt/R/03-estimation.R | 115 +++--
mirt-1.7/mirt/R/04-derivatives.R | 21 -
mirt-1.7/mirt/R/DIF.R | 96 ++--
mirt-1.7/mirt/R/DTF.R | 70 +--
mirt-1.7/mirt/R/Discrete-methods.R | 4
mirt-1.7/mirt/R/EMstep.group.R | 81 ++--
mirt-1.7/mirt/R/EMstep.utils.R | 61 ++-
mirt-1.7/mirt/R/M2.R | 63 +--
mirt-1.7/mirt/R/MHRM.group.R | 89 +++-
mirt-1.7/mirt/R/Mixed-methods.R | 68 ++-
mirt-1.7/mirt/R/MultipleGroup-methods.R | 15
mirt-1.7/mirt/R/PLCI.mirt.R | 137 +++++--
mirt-1.7/mirt/R/PrepData.R | 5
mirt-1.7/mirt/R/SE.methods.R | 35 -
mirt-1.7/mirt/R/SingleGroup-methods.R |only
mirt-1.7/mirt/R/averageMI.R |only
mirt-1.7/mirt/R/bfactor.R | 27 +
mirt-1.7/mirt/R/boot.mirt.R | 83 ++--
mirt-1.7/mirt/R/calcLogLik.R | 84 ----
mirt-1.7/mirt/R/extract.item.R | 6
mirt-1.7/mirt/R/fscores.R | 69 ++-
mirt-1.7/mirt/R/fscores.internal.R | 152 ++++---
mirt-1.7/mirt/R/imputeMissing.R | 18
mirt-1.7/mirt/R/itemfit.R | 111 ++---
mirt-1.7/mirt/R/itemplot.R | 2
mirt-1.7/mirt/R/itemplot.internal.R | 17
mirt-1.7/mirt/R/mdirt.R | 8
mirt-1.7/mirt/R/mirt.R | 424 ++++++++++++----------
mirt-1.7/mirt/R/mirt.model.R | 87 ++--
mirt-1.7/mirt/R/mixedmirt.R | 178 +++++++--
mirt-1.7/mirt/R/mod2values.R | 26 +
mirt-1.7/mirt/R/model.elements.R | 6
mirt-1.7/mirt/R/multipleGroup.R | 41 +-
mirt-1.7/mirt/R/personfit.R | 25 -
mirt-1.7/mirt/R/randef.R | 26 +
mirt-1.7/mirt/R/utils.R | 250 +++++++++---
mirt-1.7/mirt/build/vignette.rds |binary
mirt-1.7/mirt/man/Bock1997.Rd | 3
mirt-1.7/mirt/man/DIF.Rd | 25 -
mirt-1.7/mirt/man/DTF.Rd | 11
mirt-1.7/mirt/man/DiscreteClass-class.Rd | 5
mirt-1.7/mirt/man/LSAT6.Rd | 3
mirt-1.7/mirt/man/LSAT7.Rd | 3
mirt-1.7/mirt/man/M2.Rd | 3
mirt-1.7/mirt/man/MixedClass-class.Rd | 8
mirt-1.7/mirt/man/MultipleGroupClass-class.Rd | 5
mirt-1.7/mirt/man/PLCI.mirt.Rd | 10
mirt-1.7/mirt/man/SAT12.Rd | 3
mirt-1.7/mirt/man/Science.Rd | 3
mirt-1.7/mirt/man/SingleGroupClass-class.Rd |only
mirt-1.7/mirt/man/anova-method.Rd | 10
mirt-1.7/mirt/man/averageMI.Rd |only
mirt-1.7/mirt/man/bfactor.Rd | 24 -
mirt-1.7/mirt/man/boot.mirt.Rd | 11
mirt-1.7/mirt/man/coef-method.Rd | 17
mirt-1.7/mirt/man/createItem.Rd | 3
mirt-1.7/mirt/man/deAyala.Rd | 3
mirt-1.7/mirt/man/expand.table.Rd | 3
mirt-1.7/mirt/man/expected.item.Rd | 3
mirt-1.7/mirt/man/expected.test.Rd | 3
mirt-1.7/mirt/man/extract.group.Rd | 3
mirt-1.7/mirt/man/extract.item.Rd | 5
mirt-1.7/mirt/man/fscores.Rd | 34 +
mirt-1.7/mirt/man/imputeMissing.Rd | 7
mirt-1.7/mirt/man/itemfit.Rd | 10
mirt-1.7/mirt/man/iteminfo.Rd | 3
mirt-1.7/mirt/man/itemplot.Rd | 5
mirt-1.7/mirt/man/key2binary.Rd | 3
mirt-1.7/mirt/man/mdirt.Rd | 7
mirt-1.7/mirt/man/mirt-package.Rd | 3
mirt-1.7/mirt/man/mirt.Rd | 97 +++--
mirt-1.7/mirt/man/mirt.model.Rd | 12
mirt-1.7/mirt/man/mirtCluster.Rd | 3
mirt-1.7/mirt/man/mixedmirt.Rd | 130 ++++++
mirt-1.7/mirt/man/mod2values.Rd | 7
mirt-1.7/mirt/man/multipleGroup.Rd | 8
mirt-1.7/mirt/man/personfit.Rd | 8
mirt-1.7/mirt/man/plot-method.Rd | 12
mirt-1.7/mirt/man/print-method.Rd | 10
mirt-1.7/mirt/man/probtrace.Rd | 3
mirt-1.7/mirt/man/randef.Rd | 7
mirt-1.7/mirt/man/residuals-method.Rd | 10
mirt-1.7/mirt/man/show-method.Rd | 10
mirt-1.7/mirt/man/simdata.Rd | 3
mirt-1.7/mirt/man/summary-method.Rd | 10
mirt-1.7/mirt/man/testinfo.Rd | 3
mirt-1.7/mirt/man/wald.Rd | 3
mirt-1.7/mirt/src/Estep.cpp | 135 +++++--
mirt-1.7/mirt/src/traceLinePts.cpp | 52 +-
mirt-1.7/mirt/tests/extratests/test-02-wideData.R | 4
mirt-1.7/mirt/tests/tests/test-01-mirtOne.R | 33 -
mirt-1.7/mirt/tests/tests/test-02-mirtTwo.R | 45 +-
mirt-1.7/mirt/tests/tests/test-03-bfactor.R | 22 -
mirt-1.7/mirt/tests/tests/test-04-multipleGroup.R | 14
mirt-1.7/mirt/tests/tests/test-05-confmirtOne.R | 26 -
mirt-1.7/mirt/tests/tests/test-06-confmirtTwo.R | 18
mirt-1.7/mirt/tests/tests/test-07-mixedmirt.R | 104 ++++-
mirt-1.7/mirt/tests/tests/test-08-createItem.R | 6
mirt-1.7/mirt/tests/tests/test-10-extras.R | 20 -
mirt-1.7/mirt/tests/tests/test-11-discrete.R | 233 ++++++------
111 files changed, 2647 insertions(+), 1636 deletions(-)
Title: Fit, Simulate and Diagnose Models for Network Evolution based on
Exponential-Family Random Graph Models
Diff between tergm versions 3.2.3 dated 2014-12-11 and 3.2.4 dated 2014-12-15
Description: An integrated set of extensions to the `ergm` package to analyze and simulate network evolution based on exponential-family random graph models (ERGM). "tergm" is a part of the "statnet" suite of packages for network analysis.
Author: Pavel N. Krivitsky [aut, cre],
Mark S. Handcock [aut, ths],
David R. Hunter [ctb],
Steven M. Goodreau [ctb, ths],
Martina Morris [ctb, ths],
Nicole Bohme Carnegie [ctb],
Carter T. Butts [ctb],
Ayn Leslie-Cook [ctb],
Skye Bender-deMoll [ctb],
Li Wang [ctb],
Kirk Li [ctb]
Maintainer: Pavel N. Krivitsky
DESCRIPTION | 8 ++---
MD5 | 10 +++---
build/vignette.rds |binary
inst/NEWS.Rd | 76 ++++++++++++++++++++++++++++++++--------------------
inst/doc/STERGM.pdf |binary
src/MCMCDyn.c | 6 ++--
6 files changed, 60 insertions(+), 40 deletions(-)
Title: Data Visualization for Statistics in Social Science
Diff between sjPlot versions 1.6 dated 2014-11-19 and 1.6.5 dated 2014-12-15
Description: Collection of several plotting and table output functions for
visualizing data, and utility functions.
Author: Daniel Lüdecke
Maintainer: Daniel Luedecke
sjPlot-1.6.5/sjPlot/DESCRIPTION | 12
sjPlot-1.6.5/sjPlot/MD5 | 208 +-
sjPlot-1.6.5/sjPlot/NAMESPACE | 6
sjPlot-1.6.5/sjPlot/NEWS | 805 ++++----
sjPlot-1.6.5/sjPlot/R/sjImportSPSS.R | 792 ++++----
sjPlot-1.6.5/sjPlot/R/sjPlotAncovaLSMeans.R | 2
sjPlot-1.6.5/sjPlot/R/sjPlotAnova.R | 1078 +++++------
sjPlot-1.6.5/sjPlot/R/sjPlotClusterAnalysis.R | 1816 +++++++++----------
sjPlot-1.6.5/sjPlot/R/sjPlotCorr.R | 696 +++----
sjPlot-1.6.5/sjPlot/R/sjPlotFrequencies.R | 1638 ++++++++---------
sjPlot-1.6.5/sjPlot/R/sjPlotGLME.R | 376 +++-
sjPlot-1.6.5/sjPlot/R/sjPlotGroupFrequencies.R | 75
sjPlot-1.6.5/sjPlot/R/sjPlotInteractions.R | 1450 ++++++++-------
sjPlot-1.6.5/sjPlot/R/sjPlotLinreg.R | 112 -
sjPlot-1.6.5/sjPlot/R/sjPlotOdds.R | 35
sjPlot-1.6.5/sjPlot/R/sjPlotPCA.R | 828 ++++-----
sjPlot-1.6.5/sjPlot/R/sjPlotPropTable.R | 1423 +++++++--------
sjPlot-1.6.5/sjPlot/R/sjPlotScatter.R | 632 +++---
sjPlot-1.6.5/sjPlot/R/sjPlotSetTheme.R | 17
sjPlot-1.6.5/sjPlot/R/sjRecode.R | 2113 +++++++++++------------
sjPlot-1.6.5/sjPlot/R/sjStatistics.R | 28
sjPlot-1.6.5/sjPlot/R/sjTabDataFrame.R | 740 ++++----
sjPlot-1.6.5/sjPlot/R/sjTabFrequencies.R | 4
sjPlot-1.6.5/sjPlot/R/sjTabLinReg.R | 2
sjPlot-1.6.5/sjPlot/R/sjTabPCA.R | 1170 ++++++------
sjPlot-1.6.5/sjPlot/R/sjTabPropTable.R | 1600 ++++++++---------
sjPlot-1.6.5/sjPlot/R/sjTabSPSS.R | 660 +++----
sjPlot-1.6.5/sjPlot/R/sjTabStackFrq.R | 1044 +++++------
sjPlot-1.6.5/sjPlot/README.md | 90
sjPlot-1.6.5/sjPlot/man/efc.Rd | 3
sjPlot-1.6.5/sjPlot/man/sj.setGeomColors.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjPlot-package.Rd | 18
sjPlot-1.6.5/sjPlot/man/sjc.cluster.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjc.dend.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjc.elbow.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjc.grpdisc.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjc.kgap.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjc.qclus.Rd | 3
sjPlot-1.6.5/sjPlot/man/sji.SPSS.Rd | 101 -
sjPlot-1.6.5/sjPlot/man/sji.convertToLabel.Rd | 3
sjPlot-1.6.5/sjPlot/man/sji.convertToValue.Rd | 3
sjPlot-1.6.5/sjPlot/man/sji.getValueLabels.Rd | 93 -
sjPlot-1.6.5/sjPlot/man/sji.getVariableLabels.Rd | 91
sjPlot-1.6.5/sjPlot/man/sji.setValueLabels.Rd | 93 -
sjPlot-1.6.5/sjPlot/man/sji.setVariableLabels.Rd | 123 -
sjPlot-1.6.5/sjPlot/man/sji.viewSPSS.Rd | 247 +-
sjPlot-1.6.5/sjPlot/man/sjp.aov1.Rd | 307 +--
sjPlot-1.6.5/sjPlot/man/sjp.chi2.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjp.corr.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjp.emm.int.Rd | 5
sjPlot-1.6.5/sjPlot/man/sjp.frq.Rd | 570 +++---
sjPlot-1.6.5/sjPlot/man/sjp.glm.Rd | 6
sjPlot-1.6.5/sjPlot/man/sjp.glm.ma.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjp.glmer.Rd | 375 ++--
sjPlot-1.6.5/sjPlot/man/sjp.glmm.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjp.grpfrq.Rd | 571 +++---
sjPlot-1.6.5/sjPlot/man/sjp.int.Rd |only
sjPlot-1.6.5/sjPlot/man/sjp.likert.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjp.lm.Rd | 7
sjPlot-1.6.5/sjPlot/man/sjp.lm.ma.Rd | 5
sjPlot-1.6.5/sjPlot/man/sjp.lm1.Rd | 22
sjPlot-1.6.5/sjPlot/man/sjp.lmer.Rd | 34
sjPlot-1.6.5/sjPlot/man/sjp.lmm.Rd | 311 +--
sjPlot-1.6.5/sjPlot/man/sjp.pca.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjp.reglin.Rd | 5
sjPlot-1.6.5/sjPlot/man/sjp.scatter.Rd | 309 +--
sjPlot-1.6.5/sjPlot/man/sjp.setTheme.Rd | 21
sjPlot-1.6.5/sjPlot/man/sjp.stackfrq.Rd | 359 +--
sjPlot-1.6.5/sjPlot/man/sjp.vif.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjp.xtab.Rd | 43
sjPlot-1.6.5/sjPlot/man/sjs.aov1.levene.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.chi2.gof.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.cramer.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.cronbach.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.etasq.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.mic.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.mwu.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.phi.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.reliability.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.se.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjs.stdb.Rd |only
sjPlot-1.6.5/sjPlot/man/sjs.table.values.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjt.corr.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjt.df.Rd | 289 +--
sjPlot-1.6.5/sjPlot/man/sjt.frq.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjt.glm.Rd | 507 ++---
sjPlot-1.6.5/sjPlot/man/sjt.grpmean.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjt.itemanalysis.Rd | 391 ++--
sjPlot-1.6.5/sjPlot/man/sjt.lm.Rd | 551 +++--
sjPlot-1.6.5/sjPlot/man/sjt.pca.Rd | 3
sjPlot-1.6.5/sjPlot/man/sjt.stackfrq.Rd | 385 ++--
sjPlot-1.6.5/sjPlot/man/sjt.xtab.Rd | 46
sjPlot-1.6.5/sjPlot/man/sju.adjustPlotRange.y.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.dicho.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.groupString.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.groupVar.Rd | 6
sjPlot-1.6.5/sjPlot/man/sju.groupVarLabels.Rd | 6
sjPlot-1.6.5/sjPlot/man/sju.mean.n.Rd | 20
sjPlot-1.6.5/sjPlot/man/sju.recode.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.recodeTo.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.setNA.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.strpos.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.weight.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.weight2.Rd | 3
sjPlot-1.6.5/sjPlot/man/sju.wordwrap.Rd | 3
sjPlot-1.6/sjPlot/man/sjp.lm.int.Rd |only
sjPlot-1.6/sjPlot/man/sjs.betaCoef.Rd |only
107 files changed, 13016 insertions(+), 12479 deletions(-)
Title: A Toolkit for Recursive Partytioning
Diff between partykit versions 0.8-2 dated 2014-09-12 and 0.8-3 dated 2014-12-15
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources (rpart, RWeka, PMML) yielding objects that share
functionality for print/plot/predict methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree) and model-based
recursive partitioning (mob) from the party package are provided based
on the new infrastructure.
Author: Torsten Hothorn [aut, cre],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn
DESCRIPTION | 11 ++++++-----
MD5 | 20 ++++++++++----------
build/vignette.rds |binary
inst/NEWS | 4 ++++
inst/doc/constparty.pdf |binary
inst/doc/ctree.R | 13 ++++++++++++-
inst/doc/ctree.Rnw | 15 +++++++++++++--
inst/doc/ctree.pdf |binary
inst/doc/mob.pdf |binary
inst/doc/partykit.pdf |binary
vignettes/ctree.Rnw | 15 +++++++++++++--
11 files changed, 58 insertions(+), 20 deletions(-)
Title: Linear Group Fixed Effects
Diff between lfe versions 1.7-1404 dated 2014-10-10 and 1.7-1416 dated 2014-12-15
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors as pure control variables.
Includes support for instrumented variables, robust and multi-way clustered standard errors,
as well as limited mobility bias correction.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure
DESCRIPTION | 11 ++++++-----
MD5 | 19 ++++++++++---------
inst/CITATION | 30 +++++++++++++++++++++++++-----
inst/doc/CHANGELOG | 4 +++-
inst/doc/identification.pdf |binary
inst/doc/lfehow.pdf |binary
inst/doc/speed.pdf |binary
man/bccorr.Rd |only
man/felm.Rd | 6 +++---
man/lfe-package.Rd | 13 ++++++++++---
src/lfe.c | 4 ++--
11 files changed, 59 insertions(+), 28 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-14 0.0-2
Title: Embedded JavaScript Engine
Diff between V8 versions 0.1 dated 2014-12-08 and 0.2 dated 2014-12-15
Description: V8 is Google's open source, high performance JavaScript engine. It
is written in C++ and implements ECMAScript as specified in ECMA-262, 5th
edition.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
V8-0.1/V8/src/Makevars |only
V8-0.2/V8/DESCRIPTION | 19 +++---
V8-0.2/V8/MD5 | 17 ++----
V8-0.2/V8/NAMESPACE | 4 -
V8-0.2/V8/R/RcppExports.R | 12 ++++
V8-0.2/V8/R/V8.R | 119 ++++++++++++++++++++++++------------------
V8-0.2/V8/configure | 28 +++++----
V8-0.2/V8/man/new_context.Rd | 7 ++
V8-0.2/V8/src/RcppExports.cpp | 47 ++++++++++++++++
V8-0.2/V8/src/V8.cpp | 32 ++++++++++-
10 files changed, 199 insertions(+), 86 deletions(-)
Title: Taxonomic Standardization of Plant Species Names
Diff between Taxonstand versions 1.6 dated 2014-11-27 and 1.7 dated 2014-12-15
Description: Automated standardization of taxonomic names and removal of orthographic errors in plant species names using 'The Plant List' website (www.theplantlist.org).
Author: Luis Cayuela, Jari Oksanen
Maintainer: Luis Cayuela
DESCRIPTION | 12 ++--
MD5 | 10 +--
R/TPL.R | 148 +++++++++++++----------------------------------------------
R/TPLck.R | 110 +++++++++++++++++++++++++++++++++++++------
man/TPL.Rd | 6 +-
man/TPLck.Rd | 12 +++-
6 files changed, 152 insertions(+), 146 deletions(-)
Title: Calculate Indices and Theoretical Properties of Protein
Sequences
Diff between Peptides versions 1.0.2 dated 2014-11-18 and 1.0.3 dated 2014-12-15
Description: Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot XVG output files from GROMACS molecular dynamics package.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio
Peptides-1.0.2/Peptides/R/aacomp.R |only
Peptides-1.0.2/Peptides/R/boman.R |only
Peptides-1.0.2/Peptides/R/mw.R |only
Peptides-1.0.2/Peptides/man/aacomp.Rd |only
Peptides-1.0.2/Peptides/man/boman.Rd |only
Peptides-1.0.2/Peptides/man/mw.Rd |only
Peptides-1.0.2/Peptides/man/pepdata.Rd |only
Peptides-1.0.2/Peptides/man/peptides-package.Rd |only
Peptides-1.0.3/Peptides/DESCRIPTION | 8 +++---
Peptides-1.0.3/Peptides/MD5 | 28 ++++++++++++------------
Peptides-1.0.3/Peptides/NEWS | 4 +++
Peptides-1.0.3/Peptides/R/AAcomp.R |only
Peptides-1.0.3/Peptides/R/Boman.R |only
Peptides-1.0.3/Peptides/R/MW.R |only
Peptides-1.0.3/Peptides/R/hmoment.R | 2 -
Peptides-1.0.3/Peptides/R/membpos.R | 8 +-----
Peptides-1.0.3/Peptides/data/pepdata.RData |binary
Peptides-1.0.3/Peptides/man/AAcomp.Rd |only
Peptides-1.0.3/Peptides/man/Boman.Rd |only
Peptides-1.0.3/Peptides/man/MW.Rd |only
Peptides-1.0.3/Peptides/man/Pepdata.Rd |only
Peptides-1.0.3/Peptides/man/Peptides-package.Rd |only
Peptides-1.0.3/Peptides/tests/doRUnit.R | 20 ++++++++---------
23 files changed, 35 insertions(+), 35 deletions(-)