Title: Read and Write Matlab Files
Diff between rmatio versions 0.10.0 dated 2014-05-10 and 0.11.0 dated 2014-12-16
Description: rmatio is a package for reading and writing Matlab MAT
files from R. The rmatio package supports reading MAT version 4,
MAT version 5 and MAT compressed version 5. The rmatio package can
write version 5 MAT files and version 5 files with variable
compression.
Author: Stefan Widgren [aut, cre] (Author of the R interface to the C-library
matio),
Christopher Hulbert [aut] (Author of the C-library matio,
http://sourceforge.net/projects/matio/)
Maintainer: Stefan Widgren
DESCRIPTION | 15 ++++++++-------
MD5 | 16 ++++++++--------
NAMESPACE | 4 ++--
NEWS | 14 ++++++++++++++
man/have.zlib.Rd | 3 ++-
man/read.mat.Rd | 3 ++-
man/rmatio.Rd | 3 ++-
man/write.mat-methods.Rd | 3 ++-
src/Makevars.win | 2 +-
9 files changed, 41 insertions(+), 22 deletions(-)
Title: Partial Least Squares Regression for Generalized Linear Models
Diff between plsRglm versions 1.1.0 dated 2014-07-19 and 1.1.1 dated 2014-12-16
Description: Provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand
Maintainer: Frederic Bertrand
DESCRIPTION | 16 -
MD5 | 34 +-
NAMESPACE | 215 +++++++-------
NEWS | 1
R/kfolds2CVinfos_glm.R | 2
R/plsR.dof.R | 4
build/vignette.rds |binary
demo/pls.R | 3
man/bootpls.Rd | 2
man/bootplsglm.Rd | 260 ++++++++---------
man/confints.bootpls.Rd | 4
man/kfolds2CVinfos_glm.Rd | 16 -
man/plots.confints.bootpls.Rd | 2
man/plsR.Rd | 20 -
man/plsRglm.Rd | 642 +++++++++++++++++++++---------------------
man/simul_data_YX.Rd | 146 ++++-----
man/tilt.bootpls.Rd | 2
man/tilt.bootplsglm.Rd | 33 --
18 files changed, 695 insertions(+), 707 deletions(-)
Title: Linear Quantile Mixed Models
Diff between lqmm versions 1.5 dated 2014-05-01 and 1.5.1 dated 2014-12-16
Description: Fit quantile regression models for independent and hierarchical data
Author: Marco Geraci
Maintainer: Marco Geraci
DESCRIPTION | 12 +++++++-----
MD5 | 13 ++++++++-----
R/lqmm.R | 44 ++++++++++++++++++++++++++++++++++++++++++--
build |only
inst/ChangeLog | 8 ++++++++
inst/doc/lqmm.pdf |binary
inst/doc/lqmm.pdf.asis |only
man/lqmm-package.Rd | 6 +++---
vignettes |only
9 files changed, 68 insertions(+), 15 deletions(-)
Title: Multiple Ordinal Tobit (MOT) model
Diff between lmmot versions 0.1.1 dated 2014-08-18 and 0.1.2 dated 2014-12-16
Description: Fit right censored Multiple Ordinal Tobit (MOT) model.
Author: Marvin N. Wright
Maintainer: Marvin N. Wright
DESCRIPTION | 6 +++---
MD5 | 20 ++++++++++----------
NAMESPACE | 2 ++
R/lmmot.R | 17 +++++++++++++----
man/lmmot.Rd | 50 ++++++++++++++++++++++++++------------------------
man/motFisher.Rd | 14 ++++++--------
man/motGradient.Rd | 13 ++++++-------
man/motHessian.Rd | 13 ++++++-------
man/motLogLik.Rd | 13 ++++++-------
man/print.lmmot.Rd | 8 ++++----
man/summary.lmmot.Rd | 8 ++++----
11 files changed, 86 insertions(+), 78 deletions(-)
Title: Statistical Analysis and Data Display: Heiberger and Holland
Diff between HH versions 3.1-5 dated 2014-09-13 and 3.1-8 dated 2014-12-16
Description: Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger
HH-3.1-5/HH/R/ARIMA-trellis.s |only
HH-3.1-8/HH/DESCRIPTION | 13
HH-3.1-8/HH/MD5 | 104 ++++---
HH-3.1-8/HH/NAMESPACE | 23 +
HH-3.1-8/HH/NEWS | 79 +++++
HH-3.1-8/HH/R/ARIMA-trellis.R |only
HH-3.1-8/HH/R/HHscriptnames.R | 55 +++
HH-3.1-8/HH/R/OneWayVarPlot.R | 2
HH-3.1-8/HH/R/ancovaplot.R | 4
HH-3.1-8/HH/R/bivariateNormal.R |only
HH-3.1-8/HH/R/ci.plot.R | 60 +---
HH-3.1-8/HH/R/extra.r | 10
HH-3.1-8/HH/R/hhpdf.R | 2
HH-3.1-8/HH/R/interaction2wt.R | 424 ++++++++++++++++--------------
HH-3.1-8/HH/R/mmcplot.R | 28 +
HH-3.1-8/HH/R/normal.and.t.R |only
HH-3.1-8/HH/R/normal.and.t.htest.R |only
HH-3.1-8/HH/R/normal.and.t.power.R |only
HH-3.1-8/HH/R/normal.and.t.support.R |only
HH-3.1-8/HH/R/normalTable.R |only
HH-3.1-8/HH/R/panel.interaction2wt.R | 23 -
HH-3.1-8/HH/inst/CITATION | 18 +
HH-3.1-8/HH/inst/scripts/hh2/HHApx.R |only
HH-3.1-8/HH/inst/scripts/hh2/RApx.R | 65 +++-
HH-3.1-8/HH/inst/scripts/hh2/RExcelApx.R | 12
HH-3.1-8/HH/inst/scripts/hh2/RcmdrApx.R |only
HH-3.1-8/HH/inst/scripts/hh2/conc.R |only
HH-3.1-8/HH/inst/scripts/hh2/dsgn.R | 105 +++----
HH-3.1-8/HH/inst/scripts/hh2/dsgntwo.R | 53 ++-
HH-3.1-8/HH/inst/scripts/hh2/grap.R | 112 ++++---
HH-3.1-8/HH/inst/scripts/hh2/mcomp.R | 9
HH-3.1-8/HH/inst/scripts/hh2/rega.R | 21 -
HH-3.1-8/HH/inst/scripts/hh2/regb.R | 2
HH-3.1-8/HH/inst/scripts/hh2/regbb.R | 65 ++--
HH-3.1-8/HH/inst/scripts/hh2/tser.R |only
HH-3.1-8/HH/inst/scripts/hh2/tway.R | 93 +++---
HH-3.1-8/HH/inst/scripts/hh2/twtb.R | 128 +++++----
HH-3.1-8/HH/inst/shiny |only
HH-3.1-8/HH/man/HH.package.Rd | 8
HH-3.1-8/HH/man/HHscriptnames.Rd | 31 +-
HH-3.1-8/HH/man/ancovaplot.Rd | 2
HH-3.1-8/HH/man/bivariateNormal.Rd |only
HH-3.1-8/HH/man/ci.plot.Rd | 7
HH-3.1-8/HH/man/extra.Rd | 4
HH-3.1-8/HH/man/hhpdf.Rd | 9
HH-3.1-8/HH/man/interaction2wt.Rd | 18 -
HH-3.1-8/HH/man/mmc.Rd | 7
HH-3.1-8/HH/man/mmcplot.Rd | 8
HH-3.1-8/HH/man/normal.and.t.Rd |only
HH-3.1-8/HH/man/normal.and.t.and.power.Rd |only
HH-3.1-8/HH/man/panel.interaction2wt.Rd | 13
HH-3.1-8/HH/man/panel.isomeans.Rd | 19 +
HH-3.1-8/HH/man/print.tsdiagplot.Rd | 9
HH-3.1-8/HH/man/rbind.trellis.Rd | 3
HH-3.1-8/HH/man/seqplot.Rd | 24 +
HH-3.1-8/HH/man/summary.arma.loop.Rd | 18 +
HH-3.1-8/HH/man/tsacfplots.Rd | 9
HH-3.1-8/HH/man/tsdiagplot.Rd | 9
58 files changed, 1026 insertions(+), 682 deletions(-)
Title: Export grid Graphics as SVG
Diff between gridSVG versions 1.4-0 dated 2013-09-18 and 1.4-2 dated 2014-12-16
Description: Functions to export graphics drawn with package grid to SVG
format. Additional functions provide access to SVG features that
are not available in standard R graphics, such as hyperlinks,
animation, filters, masks, clipping paths, and gradient and pattern fills.
Author: Paul Murrell [cre, aut],
Simon Potter [aut]
Maintainer: Paul Murrell
DESCRIPTION | 13 ++++++++-----
MD5 | 41 +++++++++++++++++++++--------------------
NAMESPACE | 6 ++++++
R/animate.R | 11 +++++++++++
R/attrib.R | 11 +++++++++++
R/comment.R | 1 +
R/devsvg.R | 16 ++++++++++++++--
R/filters.R | 30 +++++++++++++++++++++++-------
R/gradients.R | 16 ++++++++++++++++
R/griddev.R | 12 +++++++++---
R/hyper.R | 12 ++++++++++++
R/patterns.R | 12 ++++++++++++
R/svg.R | 30 ++++++++++++++++++++++++++++++
build/vignette.rds |binary
inst/NEWS.Rd | 26 ++++++++++++++++++++++++++
inst/doc/animation.pdf |binary
inst/doc/extensibility.pdf |binary
inst/doc/gridSVG.pdf |binary
src/buffer.c | 7 +++++++
tests/testattrib.R | 6 ++++++
tests/testforce.R |only
tests/testpatternfill.R | 13 +++++++++++++
22 files changed, 226 insertions(+), 37 deletions(-)
Title: R Wrapper for the Energy Information Administration (EIA) API
Diff between EIAdata versions 0.0.1 dated 2014-08-04 and 0.0.2 dated 2014-12-16
Description: An R wrapper to allow the user to query categories and Series IDs, and import data, from the EIA's API.
Author: Matthew Brigida
Maintainer: Matthew Brigida
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
R/source.R | 27 ++++++++++++++-------------
man/EIAdata-package.Rd | 7 ++++---
man/getCatEIA.Rd | 6 +++---
5 files changed, 30 insertions(+), 28 deletions(-)
Title: Flexible Cluster-Weighted Modeling
Diff between flexCWM versions 1.1 dated 2013-11-09 and 1.3 dated 2014-12-16
Description: This package implements a flexible version of the Cluster Weighted Model (CWM), which is an eminent member of the class of mixtures of regression models with random covariates.
Author: Mazza A., Punzo A., Ingrassia S.
Maintainer: Angelo Mazza
flexCWM-1.1/flexCWM/man/glmcwm.Rd |only
flexCWM-1.3/flexCWM/DESCRIPTION | 15
flexCWM-1.3/flexCWM/MD5 | 26
flexCWM-1.3/flexCWM/NAMESPACE | 4
flexCWM-1.3/flexCWM/R/Extractors.R |only
flexCWM-1.3/flexCWM/R/Gamma.R |only
flexCWM-1.3/flexCWM/R/PostInit.R |only
flexCWM-1.3/flexCWM/R/PostProbs.R |only
flexCWM-1.3/flexCWM/R/code.R | 961 +++++------------------------
flexCWM-1.3/flexCWM/R/cwm.R |only
flexCWM-1.3/flexCWM/R/familyY2.R |only
flexCWM-1.3/flexCWM/R/inv.gauss.R |only
flexCWM-1.3/flexCWM/R/ncovpar.R |only
flexCWM-1.3/flexCWM/R/plot.R |only
flexCWM-1.3/flexCWM/R/summary.R |only
flexCWM-1.3/flexCWM/R/t.R |only
flexCWM-1.3/flexCWM/data/students.RData |only
flexCWM-1.3/flexCWM/man/cwm.Rd |only
flexCWM-1.3/flexCWM/man/flexCWM-package.Rd | 21
flexCWM-1.3/flexCWM/man/plot.Rd |only
flexCWM-1.3/flexCWM/man/students.Rd |only
flexCWM-1.3/flexCWM/man/tourism.Rd | 9
22 files changed, 227 insertions(+), 809 deletions(-)
Title: Comparing Objects for Differences
Description: Functions to compare a model object to a comparison object.
If the objects are not identical, the functions can be instructed to
explore various modifications of the objects (e.g., sorting rows,
dropping names) to see if the modified versions are identical.
Author: Paul Murrell
Maintainer: Paul Murrell
Diff between compare versions 0.2-4 dated 2014-02-24 and 0.2-5 dated 2014-12-16
DESCRIPTION | 11 +++++++---- MD5 | 13 +++++++------ R/same.R | 40 ++++++++++++++++++++-------------------- build/vignette.rds |binary inst/NEWS.Rd |only inst/doc/compare-intro.pdf |binary inst/doc/fundamentals.pdf |binary tests/test.R | 6 ++++++ 8 files changed, 40 insertions(+), 30 deletions(-)
Title: Soft Discretization-based Bayesian Network Inference
Diff between sdnet versions 2.01.3 dated 2014-02-27 and 2.03.3 dated 2014-12-16
Description: Fitting discrete Bayesian networks using marginal mixture distributions
Author: Nikolay Balov
Maintainer: Nikolay Balov
sdnet-2.01.3/sdnet/src/Makevars.win |only
sdnet-2.03.3/sdnet/DESCRIPTION | 6
sdnet-2.03.3/sdnet/MD5 | 59 ++---
sdnet-2.03.3/sdnet/R/class.R | 66 +++---
sdnet-2.03.3/sdnet/R/eval.R | 10
sdnet-2.03.3/sdnet/R/samples.R | 4
sdnet-2.03.3/sdnet/demo/tyroid.r | 34 +++
sdnet-2.03.3/sdnet/man/cnSearchHist.Rd | 7
sdnet-2.03.3/sdnet/src/cache.cpp | 60 -----
sdnet-2.03.3/sdnet/src/cache.h | 9
sdnet-2.03.3/sdnet/src/catnet_base.h | 160 +++++++++++----
sdnet-2.03.3/sdnet/src/catnet_entropy.cpp | 318 ++++++++++++++----------------
sdnet-2.03.3/sdnet/src/catnet_quant.cpp | 182 ++++++++++-------
sdnet-2.03.3/sdnet/src/catnet_rexport.cpp | 100 +++++----
sdnet-2.03.3/sdnet/src/catnet_search.h | 100 ++++++---
sdnet-2.03.3/sdnet/src/catnetd.h | 35 ++-
sdnet-2.03.3/sdnet/src/catnetp.h | 31 ++
sdnet-2.03.3/sdnet/src/ccnInit.c | 2
sdnet-2.03.3/sdnet/src/dag_list.h | 66 ++----
sdnet-2.03.3/sdnet/src/dag_search.h | 139 +++++++++----
sdnet-2.03.3/sdnet/src/dag_search_dc.h | 230 +++++++++++++++------
sdnet-2.03.3/sdnet/src/problist.h | 137 +++++++-----
sdnet-2.03.3/sdnet/src/pthread.cpp | 16 -
sdnet-2.03.3/sdnet/src/rcatnet.cpp | 178 +++++++++++-----
sdnet-2.03.3/sdnet/src/rcatnet_hist.cpp | 104 ++++++---
sdnet-2.03.3/sdnet/src/rcatnet_prob.cpp | 29 +-
sdnet-2.03.3/sdnet/src/rcatnet_sa.cpp | 157 ++++++++++----
sdnet-2.03.3/sdnet/src/rcatnet_search.cpp | 246 +++++++++++++----------
sdnet-2.03.3/sdnet/src/search_params.h | 4
sdnet-2.03.3/sdnet/src/utils.cpp | 7
sdnet-2.03.3/sdnet/src/utils.h | 19 +
31 files changed, 1529 insertions(+), 986 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Diff between packrat versions 0.4.2 dated 2014-12-15 and 0.4.2-1 dated 2014-12-16
Description: Packrat is a tool for managing the R packages your project depends
on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, JJ Allaire
Maintainer: Kevin Ushey
packrat-0.4.2-1/packrat/DESCRIPTION | 6 ++--
packrat-0.4.2-1/packrat/MD5 | 45 ------------------------------------
packrat-0.4.2/packrat/tests |only
3 files changed, 4 insertions(+), 47 deletions(-)
Title: Evaluation of the proportional hazards assumption with a
standardized score process
Diff between PHeval versions 0.5.1 dated 2014-05-27 and 0.5.2 dated 2014-12-16
Description: This package provides tools for the evaluation of the goodness of fit and the predictive capacity of the proportional hazards model.
Author: Cecile Chauvel
Maintainer: Cecile Chauvel
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
man/plotscore.Rd | 2 +-
3 files changed, 7 insertions(+), 7 deletions(-)
More information about NeuralNetTools at CRAN
Permanent link
Title: Functional Data Analysis
Diff between fda versions 2.4.3 dated 2014-05-23 and 2.4.4 dated 2014-12-16
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer. They were
ported from earlier versions in Matlab and S-PLUS. An
introduction appears in Ramsay, J. O., Hooker, Giles, and
Graves, Spencer (2009) Functional Data Analysis with R and
Matlab (Springer). The package includes data sets and script
files working many examples including all but one of the 76
figures in this latter book. Matlab versions of the code and
sample analyses are no longer distributed through CRAN, as they
were when the book was published. For those, ftp from
http://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/
There you find a set of .zip files containing the functions and
sample analyses, as well as two .txt files giving instructions for
installation and some additional information.
The changes from Version 2.4.1 are fixes of bugs in density.fd and
removal of functions create.polynomial.basis, polynompen, and
polynomial. These were deleted because the monomial basis
does the same thing and because there were errors in the code.
Author: J. O. Ramsay
Maintainer: J. O. Ramsay
DESCRIPTION | 13 --
MD5 | 64 +++++-----
NAMESPACE | 7 -
R/TaylorSpline.R | 260 +++++++++++++++++++++---------------------
R/as.fd.R | 6
R/axisIntervals.R | 8 -
R/phaseplanePlot.R | 2
R/polyg.R | 2
R/readHMD.R | 2
data/CanadianWeather.rda |binary
data/MontrealTemp.rda |binary
data/ReginaPrecip.rda |binary
data/StatSciChinese.rda |binary
data/daily.rda |binary
data/dateAccessories.rda |binary
data/gait.rda |binary
data/growth.rda |binary
data/handwrit.rda |binary
data/infantGrowth.rda |binary
data/landmark.reg.expData.rda |binary
data/lip.rda |binary
data/melanoma.rda |binary
data/nondurables.rda |binary
data/onechild.rda |binary
data/pinch.rda |binary
data/pinchraw.rda |binary
data/refinery.rda |binary
data/seabird.rda |binary
man/TaylorSpline.Rd | 5
man/as.fd.Rd | 32 -----
man/axisIntervals.Rd | 232 ++++++++++++++++++-------------------
man/knots.fd.Rd | 13 --
man/phaseplanePlot.Rd | 2
33 files changed, 305 insertions(+), 343 deletions(-)
Title: A Collection of Epidemic/Network-Related Tools
Diff between epinet versions 2.0.8 dated 2014-10-14 and 2.0.9 dated 2014-12-16
Description: A collection of epidemic/network-related tools. Simulates transmission of diseases through contact networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data.
Author: Chris Groendyke [aut, cre],
David Welch [aut],
David Hunter [ctb]
Maintainer: Chris Groendyke
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
src/NetworkEpiMCMCSEIR.c | 16 +++++++---------
3 files changed, 13 insertions(+), 15 deletions(-)
Title: Analysis of diffusion weighted imaging (DWI) data
Diff between dti versions 1.2-0 dated 2014-05-12 and 1.2-0.1 dated 2014-12-16
Description: Diffusion Weighted Imaging (DWI) is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the human
brain. The package contains R-functions to process diffusion-weighted
data. The functionality includes diffusion tensor imaging (DTI),
diffusion kurtosis imaging (DKI), modeling for high angular resolution
diffusion weighted imaging (HARDI) using Q-ball-reconstruction and
tensor mixture models, several methods for structural adaptive
smoothing including POAS and msPOAS, and a streamline fiber tracking
for tensor and tensor mixture models.
The package provides functionality to manipulate and visualize results
in 2D and 3D.
Author: Karsten Tabelow [aut, cre],
Joerg Polzehl [aut],
Felix Anker [ctb]
Maintainer: Karsten Tabelow
DESCRIPTION | 12 ++++++------
MD5 | 14 +++++++-------
NAMESPACE | 2 +-
R/awsse3mstestprop.r | 2 +-
R/dki.r | 2 +-
R/misc.r | 2 +-
R/parallel.r | 2 +-
src/mixtensorpl.c | 2 +-
8 files changed, 19 insertions(+), 19 deletions(-)
Title: Spatial Areal Unit Modelling
Diff between CARBayes versions 3.0 dated 2014-04-04 and 4.0 dated 2014-12-16
Description: Implements Bayesian hierarchical spatial areal unit models. In such models the spatial autocorrelation is modelled by a set of random effects, which are assigned a conditional autoregressive (CAR) prior distribution. Examples of the models included are the BYM model as well as a recently developed localised spatial smoothing model.The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development is supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1.
Author: Duncan Lee
Maintainer: Duncan Lee
CARBayes-3.0/CARBayes/R/binomial.properCAR.R |only
CARBayes-3.0/CARBayes/R/bymCAR.re.R |only
CARBayes-3.0/CARBayes/R/clusterCAR.re.R |only
CARBayes-3.0/CARBayes/R/dissimilarityCAR.re.R |only
CARBayes-3.0/CARBayes/R/gaussian.properCAR.R |only
CARBayes-3.0/CARBayes/R/iarCAR.re.R |only
CARBayes-3.0/CARBayes/R/independent.re.R |only
CARBayes-3.0/CARBayes/R/lerouxCAR.re.R |only
CARBayes-3.0/CARBayes/R/poisson.properCAR.R |only
CARBayes-3.0/CARBayes/R/properCAR.re.R |only
CARBayes-3.0/CARBayes/data/dbf.rda |only
CARBayes-3.0/CARBayes/data/housedata.rda |only
CARBayes-3.0/CARBayes/data/respdata.rda |only
CARBayes-3.0/CARBayes/data/shp.rda |only
CARBayes-3.0/CARBayes/inst/doc/CARBayes-Vignette.pdf |only
CARBayes-3.0/CARBayes/man/bymCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/clusterCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/dbf.Rd |only
CARBayes-3.0/CARBayes/man/dissimilarityCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/housedata.Rd |only
CARBayes-3.0/CARBayes/man/iarCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/independent.re.Rd |only
CARBayes-3.0/CARBayes/man/lerouxCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/properCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/respdata.Rd |only
CARBayes-3.0/CARBayes/man/shp.Rd |only
CARBayes-3.0/CARBayes/src/Makevars |only
CARBayes-3.0/CARBayes/src/Makevars.win |only
CARBayes-3.0/CARBayes/src/cppfunctions.cpp |only
CARBayes-4.0/CARBayes/DESCRIPTION | 16
CARBayes-4.0/CARBayes/MD5 | 106 +--
CARBayes-4.0/CARBayes/NAMESPACE | 22
CARBayes-4.0/CARBayes/R/RcppExports.R | 51 -
CARBayes-4.0/CARBayes/R/S.CARbym.R |only
CARBayes-4.0/CARBayes/R/S.CARcluster.R |only
CARBayes-4.0/CARBayes/R/S.CARdissimilarity.R |only
CARBayes-4.0/CARBayes/R/S.CARiar.R |only
CARBayes-4.0/CARBayes/R/S.CARleroux.R |only
CARBayes-4.0/CARBayes/R/S.independent.R |only
CARBayes-4.0/CARBayes/R/binomial.bymCAR.R | 101 +--
CARBayes-4.0/CARBayes/R/binomial.clusterCAR.R | 597 ++++++++++++------
CARBayes-4.0/CARBayes/R/binomial.dissimilarityCAR.R | 84 --
CARBayes-4.0/CARBayes/R/binomial.iarCAR.R | 90 +-
CARBayes-4.0/CARBayes/R/binomial.independent.R | 59 -
CARBayes-4.0/CARBayes/R/binomial.lerouxCAR.R | 135 +---
CARBayes-4.0/CARBayes/R/gaussian.bymCAR.R | 93 +-
CARBayes-4.0/CARBayes/R/gaussian.clusterCAR.R | 591 ++++++++++++------
CARBayes-4.0/CARBayes/R/gaussian.dissimilarityCAR.R | 84 +-
CARBayes-4.0/CARBayes/R/gaussian.iarCAR.R | 86 +-
CARBayes-4.0/CARBayes/R/gaussian.independent.R | 53 -
CARBayes-4.0/CARBayes/R/gaussian.lerouxCAR.R | 137 +---
CARBayes-4.0/CARBayes/R/poisson.bymCAR.R | 103 +--
CARBayes-4.0/CARBayes/R/poisson.clusterCAR.R | 608 ++++++++++++-------
CARBayes-4.0/CARBayes/R/poisson.clusterCARagg.R |only
CARBayes-4.0/CARBayes/R/poisson.dissimilarityCAR.R | 93 +-
CARBayes-4.0/CARBayes/R/poisson.iarCAR.R | 90 +-
CARBayes-4.0/CARBayes/R/poisson.independent.R | 58 -
CARBayes-4.0/CARBayes/R/poisson.lerouxCAR.R | 125 +--
CARBayes-4.0/CARBayes/R/summarise.lincomb.R |only
CARBayes-4.0/CARBayes/R/summarise.samples.R |only
CARBayes-4.0/CARBayes/build |only
CARBayes-4.0/CARBayes/data/datalist | 6
CARBayes-4.0/CARBayes/data/spatialhousedata.rda |only
CARBayes-4.0/CARBayes/data/spatialrespdata.rda |only
CARBayes-4.0/CARBayes/inst/doc/CARBayesvignette.R |only
CARBayes-4.0/CARBayes/inst/doc/CARBayesvignette.Rnw |only
CARBayes-4.0/CARBayes/inst/doc/CARBayesvignette.pdf |only
CARBayes-4.0/CARBayes/man/CARBayes-package.Rd | 128 ----
CARBayes-4.0/CARBayes/man/S.CARbym.Rd |only
CARBayes-4.0/CARBayes/man/S.CARcluster.Rd |only
CARBayes-4.0/CARBayes/man/S.CARdissimilarity.Rd |only
CARBayes-4.0/CARBayes/man/S.CARiar.Rd |only
CARBayes-4.0/CARBayes/man/S.CARleroux.Rd |only
CARBayes-4.0/CARBayes/man/S.independent.Rd |only
CARBayes-4.0/CARBayes/man/spatialhousedata.Rd |only
CARBayes-4.0/CARBayes/man/spatialrespdata.Rd |only
CARBayes-4.0/CARBayes/man/summarise.lincomb.Rd |only
CARBayes-4.0/CARBayes/man/summarise.samples.Rd |only
CARBayes-4.0/CARBayes/src/CARBayes.cpp |only
CARBayes-4.0/CARBayes/src/RcppExports.cpp | 243 +------
CARBayes-4.0/CARBayes/vignettes |only
81 files changed, 1927 insertions(+), 1832 deletions(-)
Title: Tools for ABC analyses
Diff between abctools versions 0.3-2 dated 2014-06-25 and 1.0 dated 2014-12-16
Description: Tools for approximate Bayesian computation including summary statistic selection and assessing coverage
Author: Matt Nunes [aut, cre],
Dennis Prangle [aut]
Maintainer: Matt Nunes
abctools-0.3-2/abctools/R/pls.abc.R |only
abctools-0.3-2/abctools/data/Routput_test.rda |only
abctools-0.3-2/abctools/man/pls.abc.Rd |only
abctools-1.0/abctools/DESCRIPTION | 11
abctools-1.0/abctools/MD5 | 47 +-
abctools-1.0/abctools/NAMESPACE | 4
abctools-1.0/abctools/R/AS.select.R | 446 +++++++++++++-------------
abctools-1.0/abctools/R/AS.test.R | 2
abctools-1.0/abctools/R/mincrit.R | 230 ++++++++-----
abctools-1.0/abctools/R/selectsumm.R | 43 --
abctools-1.0/abctools/R/semiauto.abc.R | 25 +
abctools-1.0/abctools/R/stage2.R | 69 ++--
abctools-1.0/abctools/data/coal.rda |binary
abctools-1.0/abctools/data/coalobs.rda |binary
abctools-1.0/abctools/data/datalist | 1
abctools-1.0/abctools/man/AS.select.Rd | 15
abctools-1.0/abctools/man/AS.test.Rd | 7
abctools-1.0/abctools/man/abctools-package.Rd | 11
abctools-1.0/abctools/man/coal.Rd | 44 ++
abctools-1.0/abctools/man/cov.pi.Rd | 64 ++-
abctools-1.0/abctools/man/mc.ci.Rd | 12
abctools-1.0/abctools/man/mincrit.Rd | 10
abctools-1.0/abctools/man/saABC.Rd | 5
abctools-1.0/abctools/man/selectsumm.Rd | 20 -
abctools-1.0/abctools/man/semiauto.abc.Rd | 20 -
abctools-1.0/abctools/man/stage2.Rd | 16
26 files changed, 628 insertions(+), 474 deletions(-)
Title: Stellar CharactEristics Pisa Estimation gRid
Diff between SCEPtER versions 0.1-0 dated 2013-06-04 and 0.2-0 dated 2014-12-16
Description: SCEPtER pipeline for estimating the stellar age, mass, and radius
given observational
effective temperature, [Fe/H], and astroseismic
parameters. The results are obtained adopting a maximum likelihood
technique over a grid of pre-computed stellar models.
Author: Matteo Dell'Omodarme [aut, cre],
Giada Valle [aut]
Maintainer: Matteo Dell'Omodarme
SCEPtER-0.1-0/SCEPtER/man/estimateError.Rd |only
SCEPtER-0.1-0/SCEPtER/man/estimatePert.Rd |only
SCEPtER-0.1-0/SCEPtER/src/lik2.c |only
SCEPtER-0.2-0/SCEPtER/DESCRIPTION | 29 ++--
SCEPtER-0.2-0/SCEPtER/MD5 | 21 +--
SCEPtER-0.2-0/SCEPtER/NAMESPACE | 4
SCEPtER-0.2-0/SCEPtER/R/SCEPtER.R | 158 ++++++++++++---------------
SCEPtER-0.2-0/SCEPtER/data/stdGrid.rda |binary
SCEPtER-0.2-0/SCEPtER/man/SCEPtER-package.Rd | 13 +-
SCEPtER-0.2-0/SCEPtER/man/errorObs.Rd | 19 ++-
SCEPtER-0.2-0/SCEPtER/man/estimate.Rd |only
SCEPtER-0.2-0/SCEPtER/man/sampleStar.Rd | 8 -
SCEPtER-0.2-0/SCEPtER/man/stdGrid.Rd | 8 +
SCEPtER-0.2-0/SCEPtER/src/lik4.c |only
14 files changed, 133 insertions(+), 127 deletions(-)
Title: A package for Multilevel Joint Modelling Multiple Imputation
Diff between jomo versions 0.1-0 dated 2014-12-10 and 0.1-1 dated 2014-12-16
Description: Building on Schafer's pan and on standalone program REALCOM, jomo is a package for multilevel joint modelling multiple imputation.
Binary and categorical variables are handled through latent normal variables and algorithms for cluster specific covariance matrices are introduced.
Author: Matteo Quartagno, James Carpenter
Maintainer: Matteo Quartagno
DESCRIPTION | 8 ++++----
MD5 | 50 +++++++++++++++++++++++++-------------------------
R/jomo1cat.R | 5 ++++-
R/jomo1con.R | 5 ++++-
R/jomo1mix.R | 6 +++++-
R/jomo1rancat.R | 6 +++++-
R/jomo1rancathr.R | 6 +++++-
R/jomo1rancon.R | 6 +++++-
R/jomo1ranconhr.R | 6 +++++-
R/jomo1ranmix.R | 7 ++++++-
R/jomo1ranmixhr.R | 7 ++++++-
man/jomo-package.Rd | 2 +-
man/jomo1cat.Rd | 10 +++-------
man/jomo1con.Rd | 6 +-----
man/jomo1mix.Rd | 11 ++++-------
man/jomo1rancat.Rd | 10 +++-------
man/jomo1rancathr.Rd | 11 ++++-------
man/jomo1rancon.Rd | 7 ++-----
man/jomo1ranconhr.Rd | 7 ++-----
man/jomo1ranmix.Rd | 11 ++++-------
man/jomo1ranmixhr.Rd | 10 +++-------
src/jomo1mix.c | 2 +-
src/jomo1ranconhr.c | 4 ++--
src/jomo1ranmix.c | 2 +-
src/jomo1ranmixhr.c | 4 ++--
src/pdflib.c | 6 +++---
26 files changed, 110 insertions(+), 105 deletions(-)
Title: Manipulations of triangular meshes (smoothing, quadric edge
collapse decimation, im- and export of various mesh
file-formats, cleaning, etc.) based on the VCGLIB API.
Diff between Rvcg versions 0.9 dated 2014-09-23 and 0.10 dated 2014-12-16
Description: Operations on triangular meshes based on VCGLIB. This package
integrates nicely with the R-package "rgl" to render the meshes processed
by Rvcg. The Visualization and Computer Graphics Library (VCG for short) is
an open source portable C++ templated library for manipulation, processing
and displaying with OpenGL of triangle and tetrahedral meshes. The library,
composed by more than 100k lines of code, is released under the GPL
license, and it is the base of most of the software tools of the Visual
Computing Lab of the Italian National Research Council Institute ISTI
(http://vcg.isti.cnr.it), like metro and MeshLab.
The vcglib source is pulled from
trunk (svn://svn.code.sf.net/p/vcg/code/trunk/vcglib) and patched to work
with options determined by the configure script as well as
to work with the header files included by RcppEigen.
Author: Stefan Schlager; the authors of VCGLIB for the included version of the
code
Maintainer: Stefan Schlager
Rvcg-0.10/Rvcg/DESCRIPTION | 8
Rvcg-0.10/Rvcg/MD5 | 108 ++++++------
Rvcg-0.10/Rvcg/NAMESPACE | 4
Rvcg-0.10/Rvcg/R/Rvcg-package.R | 4
Rvcg-0.10/Rvcg/R/onUnload.r |only
Rvcg-0.10/Rvcg/R/vcgClean.r | 8
Rvcg-0.10/Rvcg/R/vcgClost.r | 10 -
Rvcg-0.10/Rvcg/R/vcgClostKD.r | 18 +-
Rvcg-0.10/Rvcg/R/vcgImport.r | 9 +
Rvcg-0.10/Rvcg/R/vcgIsolated.r | 53 ++---
Rvcg-0.10/Rvcg/R/vcgIsosurface.r | 7
Rvcg-0.10/Rvcg/R/vcgPlyWrite.r | 25 ++
Rvcg-0.10/Rvcg/R/vcgSmooth.r | 6
Rvcg-0.10/Rvcg/R/vcgUniformRemesh.r |only
Rvcg-0.10/Rvcg/README.md | 14 -
Rvcg-0.10/Rvcg/inst/NEWS.Rd |only
Rvcg-0.10/Rvcg/man/Rvcg-package.Rd | 6
Rvcg-0.10/Rvcg/man/dummyhead.Rd | 2
Rvcg-0.10/Rvcg/man/humface.Rd | 2
Rvcg-0.10/Rvcg/man/meshintegrity.Rd | 2
Rvcg-0.10/Rvcg/man/setRays.Rd | 2
Rvcg-0.10/Rvcg/man/vcgBary.Rd | 2
Rvcg-0.10/Rvcg/man/vcgBorder.Rd | 2
Rvcg-0.10/Rvcg/man/vcgClean.Rd | 3
Rvcg-0.10/Rvcg/man/vcgClost.Rd | 8
Rvcg-0.10/Rvcg/man/vcgClostKD.Rd | 10 -
Rvcg-0.10/Rvcg/man/vcgCurve.Rd | 2
Rvcg-0.10/Rvcg/man/vcgGetEdge.Rd | 2
Rvcg-0.10/Rvcg/man/vcgImport.Rd | 7
Rvcg-0.10/Rvcg/man/vcgIsolated.Rd | 11 -
Rvcg-0.10/Rvcg/man/vcgIsosurface.Rd | 6
Rvcg-0.10/Rvcg/man/vcgKDtree.Rd | 2
Rvcg-0.10/Rvcg/man/vcgMeshres.Rd | 2
Rvcg-0.10/Rvcg/man/vcgNonBorderEdge.Rd | 2
Rvcg-0.10/Rvcg/man/vcgPlyRead.Rd | 2
Rvcg-0.10/Rvcg/man/vcgPlyWrite.Rd | 2
Rvcg-0.10/Rvcg/man/vcgQEdecim.Rd | 2
Rvcg-0.10/Rvcg/man/vcgRaySearch.Rd | 2
Rvcg-0.10/Rvcg/man/vcgSample.Rd | 2
Rvcg-0.10/Rvcg/man/vcgSmooth.Rd | 7
Rvcg-0.10/Rvcg/man/vcgStlWrite.Rd |only
Rvcg-0.10/Rvcg/man/vcgUniformRemesh.Rd |only
Rvcg-0.10/Rvcg/man/vcgUpdateNormals.Rd | 2
Rvcg-0.10/Rvcg/man/vcgVFadj.Rd | 2
Rvcg-0.10/Rvcg/src/Makevars.in | 2
Rvcg-0.10/Rvcg/src/Makevars.win | 2
Rvcg-0.10/Rvcg/src/RallRead.cpp | 28 ++-
Rvcg-0.10/Rvcg/src/Rclean.cpp | 35 ---
Rvcg-0.10/Rvcg/src/Rclost.cpp | 31 ++-
Rvcg-0.10/Rvcg/src/Rexport.cpp |only
Rvcg-0.10/Rvcg/src/Risolated.cpp | 58 +++---
Rvcg-0.10/Rvcg/src/Rkdtree.cpp | 66 +++++--
Rvcg-0.10/Rvcg/src/Rmarch.cpp | 7
Rvcg-0.10/Rvcg/src/Rsmooth.cpp | 5
Rvcg-0.10/Rvcg/src/Runiform_resample.cpp |only
Rvcg-0.10/Rvcg/src/RvcgIO.h | 43 ++++
Rvcg-0.10/Rvcg/src/typedefImport.h | 3
Rvcg-0.10/Rvcg/src/vcglib/vcg/space/index/space_iterators.h | 2
Rvcg-0.9/Rvcg/src/RPly.cpp |only
59 files changed, 396 insertions(+), 254 deletions(-)
Title: Calculations and visualisations related to Geometric
Morphometrics
Diff between Morpho versions 2.1 dated 2014-09-25 and 2.2 dated 2014-12-16
Description: A toolset for Geometric Morphometrics and mesh processing. This
includes (among other stuff) mesh deformations based on reference points,
permutation tests, detection of outliers, processing of sliding
semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager
Maintainer: Stefan Schlager
Morpho-2.1/Morpho/man/conv2backf.Rd |only
Morpho-2.1/Morpho/man/tanplan.Rd |only
Morpho-2.2/Morpho/DESCRIPTION | 8 -
Morpho-2.2/Morpho/MD5 | 114 ++++++++------
Morpho-2.2/Morpho/NAMESPACE | 12 +
Morpho-2.2/Morpho/R/ComputeTransform.r | 4
Morpho-2.2/Morpho/R/CreateL.r | 48 ++++--
Morpho-2.2/Morpho/R/Morpho-package.R | 30 +++
Morpho-2.2/Morpho/R/ProcGPA.r | 10 -
Morpho-2.2/Morpho/R/RegScore.r | 19 ++
Morpho-2.2/Morpho/R/Semislide.r | 16 +-
Morpho-2.2/Morpho/R/applyTransform.r | 7
Morpho-2.2/Morpho/R/calcGamma.r | 35 ++--
Morpho-2.2/Morpho/R/calcTang_U_s.r | 221 +++++++++++++++--------------
Morpho-2.2/Morpho/R/conv2backf.r | 4
Morpho-2.2/Morpho/R/createMissingList.r |only
Morpho-2.2/Morpho/R/crossp.r | 5
Morpho-2.2/Morpho/R/cutSpace.r | 40 +++--
Morpho-2.2/Morpho/R/deform.grid.r | 36 ++--
Morpho-2.2/Morpho/R/deformGrid2d.r |only
Morpho-2.2/Morpho/R/groupPCA.r | 6
Morpho-2.2/Morpho/R/groupPCAcrova.r | 4
Morpho-2.2/Morpho/R/meshDist.r | 2
Morpho-2.2/Morpho/R/meshPlaneIntersect.r | 4
Morpho-2.2/Morpho/R/mirror.r | 6
Morpho-2.2/Morpho/R/onUnload.r |only
Morpho-2.2/Morpho/R/pcAlign.r | 116 +++++++++------
Morpho-2.2/Morpho/R/place.patch.r | 10 -
Morpho-2.2/Morpho/R/points2plane.r |only
Morpho-2.2/Morpho/R/procSym.r | 18 +-
Morpho-2.2/Morpho/R/read.lmdta.r | 49 +++---
Morpho-2.2/Morpho/R/relax.lm.r | 115 ++++++++++-----
Morpho-2.2/Morpho/R/relwarps.r | 2
Morpho-2.2/Morpho/R/retrodeform.r | 10 -
Morpho-2.2/Morpho/R/rotmesh.onto.r | 2
Morpho-2.2/Morpho/R/slider3d.r | 93 ++++++++----
Morpho-2.2/Morpho/R/symmetrize.r |only
Morpho-2.2/Morpho/R/tanplan.r | 18 +-
Morpho-2.2/Morpho/R/tps3d.r | 10 -
Morpho-2.2/Morpho/R/warp.mesh.r | 2
Morpho-2.2/Morpho/README.md | 21 --
Morpho-2.2/Morpho/inst/NEWS.Rd | 35 ++++
Morpho-2.2/Morpho/man/CreateL.Rd | 5
Morpho-2.2/Morpho/man/Morpho-deprecated.Rd | 9 +
Morpho-2.2/Morpho/man/Morpho-package.Rd | 4
Morpho-2.2/Morpho/man/ProcGPA.Rd | 4
Morpho-2.2/Morpho/man/RegScore.Rd | 19 ++
Morpho-2.2/Morpho/man/computeTransform.Rd | 4
Morpho-2.2/Morpho/man/createMissingList.Rd |only
Morpho-2.2/Morpho/man/cutMeshPlane.Rd | 5
Morpho-2.2/Morpho/man/cutSpace.Rd | 12 +
Morpho-2.2/Morpho/man/deformGrid2d.Rd |only
Morpho-2.2/Morpho/man/deformGrid3d.Rd | 8 -
Morpho-2.2/Morpho/man/invertFaces.Rd |only
Morpho-2.2/Morpho/man/meshDist.Rd | 2
Morpho-2.2/Morpho/man/pcAlign.Rd | 16 +-
Morpho-2.2/Morpho/man/points2plane.Rd |only
Morpho-2.2/Morpho/man/procSym.Rd | 19 +-
Morpho-2.2/Morpho/man/relaxLM.Rd | 53 +++++-
Morpho-2.2/Morpho/man/retroDeform3d.Rd | 2
Morpho-2.2/Morpho/man/retroDeformMesh.Rd | 2
Morpho-2.2/Morpho/man/slider3d.Rd | 45 +++--
Morpho-2.2/Morpho/man/symmetrize.Rd |only
Morpho-2.2/Morpho/man/tangentPlane.Rd |only
Morpho-2.2/Morpho/src/tweakU.cpp |only
65 files changed, 845 insertions(+), 496 deletions(-)
Title: Import, plot and analyze bathymetric and topographic data
Diff between marmap versions 0.9 dated 2014-11-06 and 0.9.1 dated 2014-12-16
Description: Import, plot and analyze bathymetric and topographic data
Author: Eric Pante, Benoit Simon-Bouhet, and Jean-Olivier Irisson
Maintainer: Eric Pante
DESCRIPTION | 10 +++++-----
MD5 | 38 +++++++++++++++++++++++---------------
NAMESPACE | 3 ++-
R/combine.buffers.R |only
R/create.buffer.R |only
R/get.area.R | 1 +
R/get.depth.R | 11 ++++++-----
R/outline.buffer.R |only
R/plotArea.R |only
R/plotProfile.R | 4 ++--
R/read.bathy.R | 4 ++--
R/setSQL.R | 4 ++--
R/subsetBathy.R | 2 +-
R/subsetSQL.R | 5 +++--
inst/doc/marmap-DataAnalysis.pdf |binary
inst/doc/marmap-ImportExport.pdf |binary
man/combine.buffers.Rd |only
man/create.buffer.Rd |only
man/get.area.Rd | 32 +++++++++++++++++---------------
man/marmap.Rd | 4 ++--
man/outline.buffer.Rd |only
man/plotArea.Rd |only
man/read.bathy.Rd | 5 ++++-
man/subsetSQL.Rd | 9 ++++++---
24 files changed, 76 insertions(+), 56 deletions(-)
Title: Predicting Causal Direction from Dependency Features
Diff between D2C versions 1.0 dated 2014-11-10 and 1.1 dated 2014-12-16
Description: The relationship between statistical dependency and causality lies
at the heart of all statistical approaches to causal inference. The D2C
package implements a supervised machine learning approach to infer the
existence of a directed causal link between two variables in multivariate
settings with n>2 variables. The approach relies on the asymmetry of some
conditional (in)dependence relations between the members of the Markov
blankets of two variables causally connected. The D2C algorithm predicts
the existence of a direct causal link between two variables in a
multivariate setting by (i) creating a set of of features of the
relationship based on asymmetric descriptors of the multivariate dependency
and (ii) using a classifier to learn a mapping between the features and the
presence of a causal link
Author: Gianluca Bontempi, Catharina Olsen, Maxime Flauder
Maintainer: Catharina Olsen
D2C-1.0/D2C/R/D2c.predict.R |only
D2C-1.0/D2C/R/data.R |only
D2C-1.0/D2C/R/train.R |only
D2C-1.0/D2C/data/example.rdata |only
D2C-1.0/D2C/data/linear.rdata |only
D2C-1.0/D2C/data/linearSmall.rdata |only
D2C-1.0/D2C/data/quadratic.rdata |only
D2C-1.0/D2C/data/quadraticSmall.rdata |only
D2C-1.0/D2C/man/D2C.Data-class.Rd |only
D2C-1.0/D2C/man/D2C.network-class.Rd |only
D2C-1.0/D2C/man/compute-D2C.network-method.Rd |only
D2C-1.0/D2C/man/computeDescriptor-D2C.Data-method.Rd |only
D2C-1.0/D2C/man/example_prediction.Rd |only
D2C-1.0/D2C/man/initialize-D2C.Data-method.Rd |only
D2C-1.0/D2C/man/initialize-D2C.Predict-method.Rd |only
D2C-1.0/D2C/man/initialize-D2C.network-method.Rd |only
D2C-1.0/D2C/man/linear.Rd |only
D2C-1.0/D2C/man/linearSmall.Rd |only
D2C-1.0/D2C/man/predict-D2C.Predict-method.Rd |only
D2C-1.0/D2C/man/quadratic.Rd |only
D2C-1.0/D2C/man/quadraticSmall.Rd |only
D2C-1.1/D2C/CHANGES |only
D2C-1.1/D2C/DESCRIPTION | 11
D2C-1.1/D2C/MD5 | 52 +--
D2C-1.1/D2C/NAMESPACE | 11
D2C-1.1/D2C/R/D2c.Data.R | 312 +++++++++++++------
D2C-1.1/D2C/R/D2c.network.R | 254 ++++++++++-----
D2C-1.1/D2C/R/d2c.R | 93 ++---
D2C-1.1/D2C/R/util.R | 141 +++-----
D2C-1.1/D2C/data/datalist | 5
D2C-1.1/D2C/data/example.RData |only
D2C-1.1/D2C/man/D2C-class.Rd |only
D2C-1.1/D2C/man/D2C.descriptor-class.Rd |only
D2C-1.1/D2C/man/DAG.network-class.Rd |only
D2C-1.1/D2C/man/compute-DAG.network-method.Rd |only
D2C-1.1/D2C/man/descriptor.Rd | 29 +
D2C-1.1/D2C/man/example.Rd | 16
D2C-1.1/D2C/man/initialize-D2C-method.Rd |only
D2C-1.1/D2C/man/initialize-D2C.descriptor-method.Rd |only
D2C-1.1/D2C/man/initialize-DAG.network-method.Rd |only
D2C-1.1/D2C/man/initialize-simulatedDAG-method.Rd |only
D2C-1.1/D2C/man/mimr.Rd |only
D2C-1.1/D2C/man/predict-D2C-method.Rd |only
D2C-1.1/D2C/man/simulatedDAG-class.Rd |only
44 files changed, 561 insertions(+), 363 deletions(-)
Title: Seasonal analysis of health data
Diff between season versions 0.3-4 dated 2014-08-23 and 0.3-5 dated 2014-12-16
Description: Routines for the seasonal analysis of health data,
including regression models, time-stratified case-crossover,
plotting functions and residual checks. Thanks to Yuming Guo
for checking the case-crossover code.
Author: Adrian Barnett and Peter Baker
Maintainer: Adrian Barnett
DESCRIPTION | 8 ++++----
MD5 | 24 +++++++++++++-----------
R/cosinor.R | 30 ++++++++++++++++++++----------
R/invyrfraction.R | 5 +++++
R/plot.Cosinor.R | 11 ++++++++++-
R/print.summary.Cosinor.R | 10 ++++++++--
R/summary.Cosinor.R | 8 +++++---
data/indoor.RData |only
man/cosinor.Rd | 11 ++++++++---
man/indoor.Rd |only
man/plot.monthglm.Rd | 2 +-
man/seasrescheck.Rd | 2 +-
man/summary.Cosinor.Rd | 5 ++++-
man/wtest.Rd | 2 +-
14 files changed, 80 insertions(+), 38 deletions(-)
Title: Read and Analyze PLEXOS Solutions from R
Diff between rplexos versions 0.10.0.1 dated 2014-10-20 and 0.11 dated 2014-12-16
Description: Efficiently read and analyze PLEXOS solutions by converting them
into SQLite databases that can be easily queried. It supports collation of
solutions that may have been divided into different time partitions,
as well as the comparison across different scenarios.
Author: Eduardo Ibanez [aut, cre],
National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez
DESCRIPTION | 17 +-
MD5 | 45 +++----
NAMESPACE | 12 -
R/auxiliary.R | 9 +
R/globalVariables.R | 2
R/log_parser.R | 44 +++----
R/plexos_open.R | 17 +-
R/process_folder.R | 4
R/process_solution.R | 297 ++++++++++++++++++++++++++++---------------------
R/query.R | 86 ++++++++++----
R/zzz.R |only
build/vignette.rds |binary
man/is_sample_stats.Rd | 3
man/list_folders.Rd | 3
man/plexos_close.Rd | 3
man/plexos_open.Rd | 3
man/process_folder.Rd | 3
man/query_config.Rd | 3
man/query_log.Rd | 3
man/query_master.Rd | 11 +
man/query_property.Rd | 3
man/rplexos.Rd | 3
man/valid_columns.Rd | 3
vignettes/rplexos.Rmd | 2
24 files changed, 348 insertions(+), 228 deletions(-)
Title: Tools for Working with Rotation Data
Diff between rotations versions 1.2 dated 2014-04-07 and 1.3 dated 2014-12-16
Description: Tools for working with rotational data, including
simulation from the most commonly used distributions on SO(3),
methods for different Bayes, mean and median type estimators for
the central orientation of a sample, confidence/credible
regions for the central orientation based on those estimators and
a novel visualization technique for rotation data. Most recently,
functions to identify potentially discordant (outlying) values
have been added.
Author: Bryan Stanfill
Maintainer: Bryan Stanfill
DESCRIPTION | 28
LICENSE | 2
MD5 | 161 +--
NAMESPACE | 219 ++--
NEWS | 229 ++--
R/RcppExports.R | 342 +++---
R/bayes.R | 534 +++++-----
R/distributions.R | 986 +++++++++----------
R/estimators.R | 580 +++++------
R/grid-search.R | 200 +--
R/help.R | 20
R/kappa.R | 196 +--
R/parameterizations.R | 1004 +++++++++----------
R/plot.R | 1011 +++++++++----------
R/preliminary.R | 1436 ++++++++++++++--------------
R/primatives.R | 644 ++++++------
R/regions.R | 1076 ++++++++++-----------
R/robust.R |only
build/vignette.rds |binary
data/datalist | 4
inst/CITATION |only
inst/REFERENCES.bib | 366 +++----
inst/doc/rotations-intro.R | 169 +--
inst/doc/rotations-intro.Rnw | 728 +++++++-------
inst/doc/rotations-intro.pdf |binary
inst/include/rotations.h | 18
inst/include/rotations_RcppExports.h | 1618 ++++++++++++++++----------------
man/Angular-distributions.Rd | 40
man/Arithmetic.Rd | 160 +--
man/Cayley.Rd | 164 +--
man/Fisher.Rd | 154 +--
man/Haar.Rd | 142 +-
man/MCMCSO3.Rd | 166 +--
man/Mises.Rd | 142 +-
man/Q4-class.Rd | 20
man/Q4.Rd | 212 ++--
man/SO3-class.Rd | 22
man/SO3.Rd | 218 ++--
man/UARS.Rd | 172 +--
man/bayes.mean.Rd | 188 +--
man/bayesCR.Rd | 186 +--
man/cayley.kappa.Rd | 84 -
man/center.Rd | 88 -
man/chang.Rd | 122 +-
man/discord.Rd |only
man/drill.Rd | 114 +-
man/fisher.kappa.Rd | 84 -
man/fisheretal.Rd | 134 +-
man/genR.Rd | 92 -
man/gradient.search.Rd | 98 -
man/log.SO3.Rd | 86 -
man/mean.SO3.Rd | 166 +--
man/median.SO3.Rd | 152 +--
man/mis.angle.Rd | 108 +-
man/mis.axis.Rd | 116 +-
man/nickel.Rd | 120 +-
man/plot.SO3.Rd | 182 +--
man/pointsXYZ.Rd | 68 -
man/prentice.Rd | 118 +-
man/project.SO3.Rd | 88 -
man/region.Rd | 140 +-
man/rot.dist.Rd | 132 +-
man/rotations.Rd | 30
man/rotdist.sum.Rd | 130 +-
man/skew.exp.Rd | 68 -
man/vmises.kappa.Rd | 84 -
man/weighted.mean.SO3.Rd | 168 +--
man/zhang.Rd | 122 +-
src/CppBayesFunctions.cpp | 1
src/Makevars.win | 12
src/RcppExports.cpp | 146 ++
src/ZhangMethod.cpp | 1
src/estimators.cpp | 2
src/robustCpp.cpp |only
tests/test-all.R | 2
tests/testthat/test_arithmetic.R | 78 -
tests/testthat/test_basics.R | 90 -
tests/testthat/test_conversions.R | 40
tests/testthat/test_discord.R |only
tests/testthat/test_estimators.R | 60 -
tests/testthat/test_metrics.R | 24
vignettes/RJournal_edited.sty | 670 ++++++-------
vignettes/rotations-intro.Rnw | 728 +++++++-------
vignettes/stanfill-hofmann-genschel.bib | 733 +++++++-------
84 files changed, 9688 insertions(+), 9350 deletions(-)
Title: Graphical Representation and Modeling of Metagenomic Reads
Diff between GrammR versions 1.0.0 dated 2014-08-11 and 1.0.1 dated 2014-12-16
Description: Represents metagenomic samples on the Euclidean space to examine similarity amongst samples by studying clusters in the model. Given the matrix of metagenomic counts for samples, this package (1) quantifies dissimilarity between samples using Kendall's tau-distance, (2) constructs multidimensional models of different dimension, and (3) plots the models for visualization and comparison.
Author: Deepak N. Ayyala, Shili Lin, Department of Statistics, The Ohio State University, Columbus, Ohio, USA.
Maintainer: Deepak Nag Ayyala
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
R/GrammRServ.R | 4 +++-
R/Make2DPlots.R | 8 ++------
R/Make3DPlots.R | 15 ++-------------
R/Make4DPlots.R | 33 +++------------------------------
R/MakePlots2D.R | 11 ++---------
R/MakePlots3D.R | 17 ++---------------
R/MakePlots4D.R | 43 ++-----------------------------------------
R/OptimClusts.R | 19 +++++++++++++------
man/MCError.Rd | 6 +++++-
man/MakeGUIPlots.Rd | 18 +++++++++++++++++-
man/MakeServPlots.Rd | 19 ++++++++++++++++++-
13 files changed, 85 insertions(+), 140 deletions(-)