Title: Data Exchange between R and LabKey Server
Diff between Rlabkey versions 2.1.125 dated 2014-08-28 and 2.1.126 dated 2014-12-17
Description: Allow a user to discover, query and modify data from a LabKey Server.
Author: Peter Hussey
Maintainer: Cory Nathe
DESCRIPTION | 12 ++++++------
MD5 | 18 +++++++++---------
NEWS | 4 ++++
R/labkey.executeSql.R | 4 +++-
R/labkey.getQueryLists.R | 2 +-
R/labkey.setCurlOptions.R | 4 ++--
build/vignette.rds |binary
man/Rlabkey-package.Rd | 4 ++--
man/labkey.acceptSelfSignedCerts.Rd | 2 +-
man/labkey.executeSql.Rd | 12 +++++++++++-
10 files changed, 39 insertions(+), 23 deletions(-)
Title: Deep Learning Methods via Rcpp
Diff between RcppDL versions 0.0.3 dated 2014-12-15 and 0.0.5 dated 2014-12-17
Description: This package is based on the C++ code from Yusuke Sugomori,
which implements basic machine learning methods with
many layers (deep learning), including dA (Denoising Autoencoder),
SdA (Stacked Denoising Autoencoder), RBM (Restricted Boltzmann machine) and
DBN (Deep Belief Nets).
Author: Qiang Kou, Yusuke Sugomori
Maintainer: Qiang Kou
DESCRIPTION | 6 +--
MD5 | 16 +++++-----
man/RcppDL-package.Rd | 2 -
man/dl-class.Rd | 12 +++----
src/RcppDL.cpp | 62 +++++++++++++++++++++++++++++++++------
src/deeplearning/DBN.cpp | 7 +++-
src/deeplearning/HiddenLayer.cpp | 1
src/deeplearning/RBM.cpp | 29 +++++++++++++-----
src/deeplearning/SdA.cpp | 7 ++--
9 files changed, 102 insertions(+), 40 deletions(-)
More information about RcmdrPlugin.RMTCJags at CRAN
Permanent link
Title: Discrete Choice (Binary, Poisson and Ordered) Models with Random
Parameters
Diff between Rchoice versions 0.1 dated 2014-04-02 and 0.2 dated 2014-12-17
Description: Estimate Binary (Probit and Logit), Ordered (Probit and Logit) and
Poisson models with random parameters using Simulated Maximum Likelihood.
Rchoice handles cross-sectional and panel databases.
Author: Mauricio Sarrias
Maintainer: Mauricio Sarrias
Rchoice-0.1/Rchoice/R/lnbinary.R |only
Rchoice-0.1/Rchoice/R/lnlbinary.ran.R |only
Rchoice-0.1/Rchoice/R/lnlbinaryH.ran.R |only
Rchoice-0.1/Rchoice/R/lnlpoisson.ran.R |only
Rchoice-0.1/Rchoice/R/lnlpoissonH.ran.R |only
Rchoice-0.1/Rchoice/R/lnordered.R |only
Rchoice-0.1/Rchoice/R/lnordered.ran.R |only
Rchoice-0.1/Rchoice/R/lnorderedH.ran.R |only
Rchoice-0.1/Rchoice/R/lnpoisson.R |only
Rchoice-0.1/Rchoice/vignettes/Rchoice-concordance.tex |only
Rchoice-0.1/Rchoice/vignettes/figure/unnamed-chunk-19.pdf |only
Rchoice-0.1/Rchoice/vignettes/figure/unnamed-chunk-20.pdf |only
Rchoice-0.1/Rchoice/vignettes/figure/unnamed-chunk-21.pdf |only
Rchoice-0.2/Rchoice/DESCRIPTION | 16
Rchoice-0.2/Rchoice/MD5 | 66 -
Rchoice-0.2/Rchoice/NAMESPACE | 14
Rchoice-0.2/Rchoice/R/Rchoice.MakeDraws.R | 228 +++---
Rchoice-0.2/Rchoice/R/Rchoice.R | 393 ++++++-----
Rchoice-0.2/Rchoice/R/Rchoice.logLiks.R |only
Rchoice-0.2/Rchoice/R/Rchoice.methods.R | 469 ++++++++++---
Rchoice-0.2/Rchoice/R/Rchoice.modelform.R |only
Rchoice-0.2/Rchoice/R/Rchoice.tools.R | 29
Rchoice-0.2/Rchoice/build/vignette.rds |binary
Rchoice-0.2/Rchoice/data/Articles.rda |binary
Rchoice-0.2/Rchoice/data/Attitudes.rda |binary
Rchoice-0.2/Rchoice/data/Health.rda |binary
Rchoice-0.2/Rchoice/data/Workmroz.rda |binary
Rchoice-0.2/Rchoice/inst/doc/Rchoice.R | 255 +++----
Rchoice-0.2/Rchoice/inst/doc/Rchoice.Rnw | 499 +++++++++-----
Rchoice-0.2/Rchoice/inst/doc/Rchoice.pdf |binary
Rchoice-0.2/Rchoice/man/AIC.Rchoice.Rd | 16
Rchoice-0.2/Rchoice/man/Health.Rd | 2
Rchoice-0.2/Rchoice/man/Rchoice.Rd | 234 +++---
Rchoice-0.2/Rchoice/man/bread.Rchoice.Rd | 11
Rchoice-0.2/Rchoice/man/cov.Rchoice.Rd | 57 +
Rchoice-0.2/Rchoice/man/effect.Rchoice.Rd |only
Rchoice-0.2/Rchoice/man/estfun.Rchoice.Rd | 13
Rchoice-0.2/Rchoice/man/getSummary.Rchoice.Rd |only
Rchoice-0.2/Rchoice/man/plot.Rchoice.Rd | 90 +-
Rchoice-0.2/Rchoice/man/rFormula.Rd |only
Rchoice-0.2/Rchoice/vignettes/Rchoice.Rnw | 499 +++++++++-----
Rchoice-0.2/Rchoice/vignettes/Rchoice.bib | 167 +++-
Rchoice-0.2/Rchoice/vignettes/figure/plot1-1.pdf |only
Rchoice-0.2/Rchoice/vignettes/figure/plot2-1.pdf |only
44 files changed, 1917 insertions(+), 1141 deletions(-)
Title: Plot principal component histograms around a scatter plot.
Diff between plotpc versions 1.0-2 dated 2009-03-23 and 1.0.3 dated 2014-12-17
Description: Plot principal component histograms around a bivariate
scatter plot.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow
DESCRIPTION | 7 ++++---
MD5 |only
NEWS | 4 ++++
R/plotpc.R | 2 +-
4 files changed, 9 insertions(+), 4 deletions(-)
More information about MenuCollection at CRAN
Permanent link
Title: Extreme Value Analysis
Diff between extRemes versions 2.0-3 dated 2014-08-26 and 2.0-4 dated 2014-12-17
Description: Functions for performing extreme value analysis.
Author: Eric Gilleland
Maintainer: Eric Gilleland
DESCRIPTION | 9 +++++----
MD5 | 24 ++++++++++++++++--------
NAMESPACE | 4 ++--
R/abba.R |only
R/distfuns.R | 2 +-
R/fitdiagnostics.R | 4 ++--
R/hwmi.R |only
data/CarcasonneHeat.rda |only
data/datalist | 1 +
man/CarcasonneHeat.Rd |only
man/abba.Rd |only
man/devd.Rd | 8 ++++----
man/extRemes-internal.Rd | 7 ++++++-
man/fevd.Rd | 2 +-
man/hwmi.Rd |only
src |only
16 files changed, 38 insertions(+), 23 deletions(-)
Title: Event History Analysis
Diff between eha versions 2.4-1 dated 2014-02-17 and 2.4-2 dated 2014-12-17
Description: Sampling of risk sets in Cox regression, selections in
the Lexis diagram, bootstrapping. Parametric proportional
hazards fitting with left truncation and right censoring for
common families of distributions, piecewise constant hazards,
and discrete models. AFT regression for left truncated and
right censored data. Binary and Poisson regression for
clustered data, fixed and random effects with bootstrapping.
Author: Göran Broström [aut, cre]
Maintainer: Göran Broström
eha-2.4-1/eha/ToDo |only
eha-2.4-2/eha/ChangeLog | 11 +++-
eha-2.4-2/eha/DESCRIPTION | 33 ++++++------
eha-2.4-2/eha/MD5 | 79 +++++++++++++++---------------
eha-2.4-2/eha/R/aftp0.R | 2
eha-2.4-2/eha/R/aftp0g.R | 2
eha-2.4-2/eha/R/aftp1.R | 2
eha-2.4-2/eha/R/check.dist.R | 6 +-
eha-2.4-2/eha/R/coxreg.R | 55 ++++++++++++++++-----
eha-2.4-2/eha/R/coxreg.fit.R | 6 +-
eha-2.4-2/eha/R/frail.fit.R | 2
eha-2.4-2/eha/R/geome.fit.R | 6 +-
eha-2.4-2/eha/R/getHaz.R | 3 -
eha-2.4-2/eha/R/glmmML.fit.R | 2
eha-2.4-2/eha/R/glmmMLBoot.R | 4 -
eha-2.4-2/eha/R/make.communal.R | 2
eha-2.4-2/eha/R/phfunc.R | 8 +--
eha-2.4-2/eha/R/phreg.fit.R | 4 -
eha-2.4-2/eha/R/plot.aftreg.R | 3 +
eha-2.4-2/eha/R/plot.coxreg.R | 87 ++++++++++++++++++----------------
eha-2.4-2/eha/R/plot.hazdata.R | 24 +++++----
eha-2.4-2/eha/R/plot.phreg.R | 3 -
eha-2.4-2/eha/R/plot.surv.R | 32 +++++++++++-
eha-2.4-2/eha/R/print.pchreg.R | 4 -
eha-2.4-2/eha/R/risksets.R | 4 -
eha-2.4-2/eha/R/weibreg.fit.R | 4 -
eha-2.4-2/eha/R/wfunk.R | 4 -
eha-2.4-2/eha/build/vignette.rds |binary
eha-2.4-2/eha/inst/doc/glmmML.pdf |binary
eha-2.4-2/eha/inst/doc/parametric.pdf |binary
eha-2.4-2/eha/man/coxreg.Rd | 3 -
eha-2.4-2/eha/man/glmmML.Rd | 4 -
eha-2.4-2/eha/man/glmmML.fit.Rd | 4 -
eha-2.4-2/eha/man/glmmboot.Rd | 4 -
eha-2.4-2/eha/man/plot.Surv.Rd | 5 +
eha-2.4-2/eha/man/plot.aftreg.Rd | 12 +++-
eha-2.4-2/eha/man/plot.coxreg.Rd | 86 ++++++++++++++++-----------------
eha-2.4-2/eha/man/plot.hazdata.Rd | 4 +
eha-2.4-2/eha/src/coxfun.c | 2
eha-2.4-2/eha/src/eha_zeroin.c | 2
eha-2.4-2/eha/src/sup.c | 2
41 files changed, 306 insertions(+), 214 deletions(-)
Title: Multivariate Adaptive Regression Splines
Diff between earth versions 4.0.0 dated 2014-12-12 and 4.1.0 dated 2014-12-17
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines". (The term "MARS" is trademarked and thus not used in
the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and
Rob Tibshirani. Uses Alan Miller's Fortran utilities
with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow
earth-4.0.0/earth/inst/slowtests/test.earthmain.bat |only
earth-4.1.0/earth/DESCRIPTION | 6
earth-4.1.0/earth/MD5 | 47 ++--
earth-4.1.0/earth/NEWS | 14 +
earth-4.1.0/earth/R/earth.R | 30 +--
earth-4.1.0/earth/R/print.earth.R | 28 +-
earth-4.1.0/earth/inst/doc/earth-notes.pdf |binary
earth-4.1.0/earth/inst/doc/earth-varmod.pdf |binary
earth-4.1.0/earth/inst/slowtests/make.bat | 6
earth-4.1.0/earth/inst/slowtests/test.big.Rout.save | 2
earth-4.1.0/earth/inst/slowtests/test.cv.Rout.save | 50 ++---
earth-4.1.0/earth/inst/slowtests/test.earthc.out.save | 84 ++++----
earth-4.1.0/earth/inst/slowtests/test.earthmain.clang.bat |only
earth-4.1.0/earth/inst/slowtests/test.earthmain.gcc.bat | 6
earth-4.1.0/earth/inst/slowtests/test.earthmain.out.save | 2
earth-4.1.0/earth/inst/slowtests/test.earthmain.vc.bat |only
earth-4.1.0/earth/inst/slowtests/test.full.Rout.save | 94 ++++-----
earth-4.1.0/earth/inst/slowtests/test.glm.Rout.save | 134 +++++++-------
earth-4.1.0/earth/inst/slowtests/test.varmod.Rout.save | 2
earth-4.1.0/earth/inst/slowtests/test.weights.R | 57 +++--
earth-4.1.0/earth/inst/slowtests/test.weights.Rout.save | 72 ++++---
earth-4.1.0/earth/man/earth.Rd | 15 -
earth-4.1.0/earth/man/plot.earth.Rd | 21 +-
earth-4.1.0/earth/man/plot.varmod.Rd | 2
earth-4.1.0/earth/src/earth.c | 118 ++++++------
earth-4.1.0/earth/src/earth.h | 4
26 files changed, 422 insertions(+), 372 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Diff between dataRetrieval versions 2.0.1 dated 2014-12-03 and 2.1.0 dated 2014-12-17
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from the
National Water Information Services (NWIS) tools found here:
http://waterservices.usgs.gov/ Both EPA and USGS water quality data are
obtained from the Water Quality Portal found here:
http://www.waterqualitydata.us/portal.jsp
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut]
Maintainer: Laura DeCicco
dataRetrieval-2.0.1/dataRetrieval/data |only
dataRetrieval-2.0.1/dataRetrieval/man/pCodeToName.Rd |only
dataRetrieval-2.0.1/dataRetrieval/man/parameterCdFile.Rd |only
dataRetrieval-2.1.0/dataRetrieval/DESCRIPTION | 12 -
dataRetrieval-2.1.0/dataRetrieval/MD5 | 78 ++++-----
dataRetrieval-2.1.0/dataRetrieval/NAMESPACE | 2
dataRetrieval-2.1.0/dataRetrieval/NEWS | 7
dataRetrieval-2.1.0/dataRetrieval/R/constructNWISURL.r | 25 ---
dataRetrieval-2.1.0/dataRetrieval/R/getWebServiceData.R |only
dataRetrieval-2.1.0/dataRetrieval/R/importRDB1.r | 56 ++----
dataRetrieval-2.1.0/dataRetrieval/R/importWQP.R | 63 ++++---
dataRetrieval-2.1.0/dataRetrieval/R/importWaterML1.r | 42 +----
dataRetrieval-2.1.0/dataRetrieval/R/importWaterML2.r | 72 ++++----
dataRetrieval-2.1.0/dataRetrieval/R/readNWISdv.r | 4
dataRetrieval-2.1.0/dataRetrieval/R/readNWISpCode.r | 78 ++++-----
dataRetrieval-2.1.0/dataRetrieval/R/readNWISqw.r | 2
dataRetrieval-2.1.0/dataRetrieval/R/readNWISunit.r | 53 +++---
dataRetrieval-2.1.0/dataRetrieval/R/readWQPdata.R | 71 ++++----
dataRetrieval-2.1.0/dataRetrieval/R/readWQPqw.r | 9 -
dataRetrieval-2.1.0/dataRetrieval/R/sysdata.rda |only
dataRetrieval-2.1.0/dataRetrieval/R/tabbedDataRetrievals.R | 60 -------
dataRetrieval-2.1.0/dataRetrieval/R/whatNWISdata.r | 20 +-
dataRetrieval-2.1.0/dataRetrieval/R/whatNWISsites.R | 81 +++-------
dataRetrieval-2.1.0/dataRetrieval/R/whatWQPsites.R | 66 ++------
dataRetrieval-2.1.0/dataRetrieval/README.md | 7
dataRetrieval-2.1.0/dataRetrieval/inst/doc/dataRetrieval.R | 6
dataRetrieval-2.1.0/dataRetrieval/inst/doc/dataRetrieval.Rnw | 9 -
dataRetrieval-2.1.0/dataRetrieval/inst/doc/dataRetrieval.pdf |binary
dataRetrieval-2.1.0/dataRetrieval/man/constructNWISURL.Rd | 3
dataRetrieval-2.1.0/dataRetrieval/man/dataRetrieval-package.Rd | 4
dataRetrieval-2.1.0/dataRetrieval/man/getWebServiceData.Rd |only
dataRetrieval-2.1.0/dataRetrieval/man/importRDB1.Rd | 9 -
dataRetrieval-2.1.0/dataRetrieval/man/importWQP.Rd | 9 -
dataRetrieval-2.1.0/dataRetrieval/man/importWaterML2.Rd | 3
dataRetrieval-2.1.0/dataRetrieval/man/readNWISgwl.Rd | 27 +--
dataRetrieval-2.1.0/dataRetrieval/man/readNWISmeas.Rd | 3
dataRetrieval-2.1.0/dataRetrieval/man/readNWISpCode.Rd | 12 -
dataRetrieval-2.1.0/dataRetrieval/man/readNWISpeak.Rd | 6
dataRetrieval-2.1.0/dataRetrieval/man/readNWISrating.Rd | 3
dataRetrieval-2.1.0/dataRetrieval/man/readNWISuv.Rd | 4
dataRetrieval-2.1.0/dataRetrieval/vignettes/dataRetrieval-concordance.tex |only
dataRetrieval-2.1.0/dataRetrieval/vignettes/dataRetrieval.Rnw | 9 -
dataRetrieval-2.1.0/dataRetrieval/vignettes/figure/getNWIStemperaturePlot-1.pdf |binary
43 files changed, 403 insertions(+), 512 deletions(-)
Title: Cognitive Diagnosis Modeling
Diff between CDM versions 4.0 dated 2014-11-21 and 4.1 dated 2014-12-17
Description: Functions for cognitive diagnosis modeling
and multidimensional item response modeling for dichotomous
and polytomous data. This package enables the estimation of the
DINA and DINO model, the multiple group (polytomous) GDINA model,
the multiple choice DINA model, the general diagnostic model (GDM),
the multidimensional linear compensatory item response model and
the structured latent class model (SLCA).
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut],
Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch
DESCRIPTION | 10 ++--
MD5 | 51 ++++++++++++--------
NAMESPACE | 116 ++++++++++++++++++++++++++++++++++-------------
R/IRT.IC.R |only
R/IRT.anova.R |only
R/IRT.compareModels.R |only
R/IRT.itemfit.R | 6 --
R/IRT.modelfit.R |only
R/IRT.se.R |only
R/IRT.se.din.R |only
R/anova.din.R | 85 +++++++++++++++++++---------------
R/check.input.R | 26 +++++++---
R/confint.din.R |only
R/din.R | 1
R/logLik_CDM.R | 2
R/modelfit.cor.din.R | 8 ++-
R/modelfit.cor2.R | 14 ++++-
R/print.summary.din.R | 4 -
R/zzz.R | 8 ++-
inst/NEWS | 38 ++++++++++++---
man/CDM-package.Rd | 85 +++++++++++++++++++---------------
man/IRT.IC.Rd |only
man/IRT.anova.Rd |only
man/IRT.compareModels.Rd |only
man/IRT.factor.scores.Rd | 1
man/IRT.modelfit.Rd |only
man/anova.din.Rd | 22 ++++----
man/coef.Rd | 2
man/logLik.Rd | 4 +
man/modelfit.cor.Rd | 17 +++---
man/slca.Rd | 3 +
man/vcov.Rd | 51 +++++++++++++++++---
32 files changed, 362 insertions(+), 192 deletions(-)
Title: Another Multidimensional Analysis Package
Diff between amap versions 0.8-12 dated 2014-03-01 and 0.8-14 dated 2014-12-17
Description: Tools for Clustering and Principal Component Analysis
(With robust methods, and parallelized functions).
Author: Antoine Lucas
Maintainer: Antoine Lucas
amap-0.8-12/amap/src/distance_T.cpp |only
amap-0.8-12/amap/src/hclust_T.cpp |only
amap-0.8-14/amap/Changes | 3 ++
amap-0.8-14/amap/DESCRIPTION | 8 +++----
amap-0.8-14/amap/MD5 | 30 ++++++++++++++--------------
amap-0.8-14/amap/R/Kmeans.R | 2 -
amap-0.8-14/amap/R/hcluster.R | 4 +--
amap-0.8-14/amap/build/vignette.rds |binary
amap-0.8-14/amap/inst/doc/amap.pdf |binary
amap-0.8-14/amap/src/acprob.cpp | 12 +++++------
amap-0.8-14/amap/src/distance_T.h | 2 -
amap-0.8-14/amap/src/distance_T.inl |only
amap-0.8-14/amap/src/hclust_T.h | 2 -
amap-0.8-14/amap/src/hclust_T.inl |only
amap-0.8-14/amap/src/matrice.cpp |only
amap-0.8-14/amap/src/matrice.h | 31 ++++++++++++++++++++++++++++-
amap-0.8-14/amap/src/matriceTriangle.h |only
amap-0.8-14/amap/tests/amap-test.R | 14 +++++++++++++
amap-0.8-14/amap/tests/amap-test.Rout.save | 30 +++++++++++++++++++++++++++-
19 files changed, 107 insertions(+), 31 deletions(-)
Title: Analysis of animal movements
Diff between adehabitatLT versions 0.3.16 dated 2014-06-02 and 0.3.17 dated 2014-12-17
Description: A collection of tools for the analysis of animal movements
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
src/tests.c | 23 ++++++++++++-----------
3 files changed, 18 insertions(+), 17 deletions(-)
Title: Analysis of habitat selection by animals
Diff between adehabitatHS versions 0.3.9 dated 2014-03-08 and 0.3.10 dated 2014-12-17
Description: A collection of tools for the analysis of habitat selection
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/biv.plot.r | 5 ++---
R/biv.test.r | 5 ++---
build/vignette.rds |binary
src/tests.c | 15 ++++++++-------
6 files changed, 21 insertions(+), 22 deletions(-)
Title: Home range Estimation
Diff between adehabitatHR versions 0.4.11 dated 2014-03-08 and 0.4.12 dated 2014-12-17
Description: A collection of tools for the estimation of animals home range
Author: Clement Calenge, contributions from Scott Fortmann-Roe
Maintainer: Clement Calenge
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/LoCoH.r | 12 ++----------
build/vignette.rds |binary
src/tests.c | 21 +++++++++++----------
5 files changed, 21 insertions(+), 28 deletions(-)
Title: Analysis of habitat selection by animals
Diff between adehabitat versions 1.8.14 dated 2014-04-25 and 1.8.15 dated 2014-12-17
Description: A collection of tools for the analysis of habitat selection by animals
Author: Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe
Maintainer: Clement Calenge
DESCRIPTION | 8 +-
MD5 | 16 ++---
R/asc2im.r | 3 -
R/biv.plot.r | 5 -
R/biv.test.r | 5 -
R/explore.kasc.r | 42 +++++++--------
R/simm.crw.r | 3 -
R/trajdyn.r | 147 +++++++++++++++++++++++++++----------------------------
src/tests.c | 29 +++++-----
9 files changed, 127 insertions(+), 131 deletions(-)
Title: Biological Sequences Retrieval and Analysis
Diff between seqinr versions 3.1-2 dated 2014-12-02 and 3.1-3 dated 2014-12-17
Description: Exploratory data analysis and data visualization
for biological sequence (DNA and protein) data. Includes also
utilities for sequence data management under the ACNUC system.
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and Leonor Palmeira and Simon Penel and Guy Perriere
Maintainer: Simon Penel
DESCRIPTION | 11 +++++++----
MD5 | 4 ++--
R/read.abif.R | 6 +++---
3 files changed, 12 insertions(+), 9 deletions(-)
Title: Tools for Graphical Inference
Diff between nullabor versions 0.3.0 dated 2014-10-29 and 0.3.1 dated 2014-12-17
Description: Tools for visual inference. Generate null data sets
and null plots using permutation and simulation. Calculate distance metrics
for a lineup, and examine the distributions of metrics.
Author: Hadley Wickham
Maintainer: Di Cook
DESCRIPTION | 6 -
MD5 | 14 +--
R/distmet.r | 79 ++++++++++++----------
inst/doc/nullabor.R | 12 +--
inst/doc/nullabor.Rmd | 14 +--
inst/doc/nullabor.html | 174 ++++++++++++++++++++++---------------------------
man/distmet.Rd | 64 ++++++++++--------
man/distplot.Rd | 11 +--
8 files changed, 186 insertions(+), 188 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-10 1.0-1
2014-04-16 1.0-0
Title: R Binder for the Yhat API
Diff between yhatr versions 0.13.1 dated 2014-11-21 and 0.13.2 dated 2014-12-17
Description: yhatr lets you deploy, maintain, and invoke models via the Yhat
REST API.
Author: Greg Lamp
Maintainer: Greg Lamp
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/yhatR.R | 9 ++++++---
3 files changed, 12 insertions(+), 9 deletions(-)
Title: Analysis of Quaternary Science Data
Diff between rioja versions 0.8-7 dated 2014-06-30 and 0.9-3 dated 2014-12-17
Description: Functions for the analysis of Quaternary science data, including
constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer
functions, and stratigraphic diagrams.
Author: Steve Juggins
Maintainer: Steve Juggins
DESCRIPTION | 14 +++++++-------
MD5 | 40 +++++++++++++++++++++-------------------
NAMESPACE | 35 +++++++++++++++++++++++++++++++----
R/IKFA.r | 9 ++++++++-
R/MLRC2.R | 2 +-
R/MR.r |only
R/PTF.r | 2 +-
R/WA.r | 10 +++++-----
R/cep.r | 14 +++++++-------
R/compare.datasets.r | 2 +-
R/readC2Model.r | 36 +++++++++++++++++++-----------------
R/sp.plot.r | 2 +-
R/strat.plot.r | 2 +-
R/utils.r | 13 ++++++-------
inst/CITATION | 4 ++--
inst/ChangeLog | 10 ++++++++++
man/IKFA.Rd | 5 -----
man/MR.Rd |only
man/chclust.Rd | 3 +++
man/read.C2Model.Rd | 6 +++---
man/rioja-internal.Rd | 3 +++
man/rioja.package.Rd | 5 +++--
22 files changed, 133 insertions(+), 84 deletions(-)
Title: Partial Least Squares Regression for Cox Models and Related
Techniques
Diff between plsRcox versions 1.7.0 dated 2014-07-19 and 1.7.2 dated 2014-12-17
Description: Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings.
Author: Frederic Bertrand
Maintainer: Frederic Bertrand
DESCRIPTION | 15 +++++++--------
MD5 | 10 +++++-----
NEWS | 1 +
R/cv.larsDR.R | 4 ++--
man/cv.coxDKsplsDR.Rd | 2 +-
man/cv.larsDR.Rd | 1 +
6 files changed, 17 insertions(+), 16 deletions(-)
Title: Partial Least Squares Regression for Beta Regression Models
Diff between plsRbeta versions 0.1.8 dated 2014-03-11 and 0.2.0 dated 2014-12-17
Description: Provides Partial least squares Regression for (weighted) beta regression models and k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand
Maintainer: Frederic Bertrand
DESCRIPTION | 14 +--
MD5 | 8 -
NEWS | 1
man/bootplsbeta.Rd | 204 +++++++++++++++++++++++-------------------------
man/tilt.bootplsbeta.Rd | 106 ++++++++++++------------
5 files changed, 163 insertions(+), 170 deletions(-)
Title: MWA package for causal inference in spatiotemporal event data
Diff between mwa versions 0.3.2 dated 2014-07-30 and 0.4 dated 2014-12-17
Description: MWA grants insights into causal relationships in spatiotemporal event data.
Author: Sebastian Schutte and Karsten Donnay
Maintainer: Sebastian Schutte
mwa-0.3.2/mwa/inst/javasrc |only
mwa-0.4/mwa/DESCRIPTION | 8 ++++----
mwa-0.4/mwa/MD5 | 10 +++++-----
mwa-0.4/mwa/NAMESPACE | 11 +++++++----
mwa-0.4/mwa/R/mwa.R | 14 +++++++-------
mwa-0.4/mwa/inst/java/WakeCounter.jar |binary
mwa-0.4/mwa/java |only
7 files changed, 23 insertions(+), 20 deletions(-)
Title: Tools for Detecting Influential Data in Mixed Effects Models
Diff between influence.ME versions 0.9-4 dated 2014-03-17 and 0.9-5 dated 2014-12-17
Description: influence.ME provides a collection of tools for
detecting influential cases in generalized mixed effects
models. It analyses models that were estimated using lme4. The
basic rationale behind identifying influential data is that
when iteratively single units are omitted from the data, models
based on these data should not produce substantially different
estimates. To standardize the assessment of how influential a
(single group of) observation(s) is, several measures of
influence are common practice, such as DFBETAS and Cook's Distance.
In addition, we provide a measure of percentage change of the fixed point
estimates and a simple procedure to detect changing levels of significance.
Author: Rense Nieuwenhuis, Ben Pelzer, Manfred te Grotenhuis
Maintainer: Rense Nieuwenhuis
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
R/exclude.influence.R | 14 ++++++++++++++
R/influence.R | 19 +++++++++++++++++++
4 files changed, 41 insertions(+), 8 deletions(-)
Title: A Database Exploration Tool with Assisted Querying and Schema
Exploration
Diff between db.r versions 0.1.1 dated 2014-12-04 and 0.1.3 dated 2014-12-17
Description: db.r uses OOP style objects (with an API akin to C++, Python, Ruby,
Javascript, etc.) to help make visualizing the tables, columns, and
available operations on your database easier. db.r dynamically loads
database schemas, execute queries, and manage credentials.
Author: Greg Lamp
Maintainer: Greg Lamp
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/db.r | 2 ++
3 files changed, 7 insertions(+), 5 deletions(-)
Title: Design and Analysis of Experiments with R
Diff between daewr versions 1.0-10 dated 2013-10-03 and 1.1-4 dated 2014-12-17
Description: Data frames and functions used in the book "Design and Analysis of Experiments with R"
Author: John Lawson
Maintainer: John Lawson
DESCRIPTION | 16 ++---
MD5 | 152 +++++++++++++++++++++++++++------------------------
NAMESPACE | 57 +++++++++++--------
R/Fpower1.R |only
R/Fpower2.R |only
R/Gaptest.R | 13 +++-
R/LGB.R | 65 +--------------------
R/LGBc.R |only
R/OptPB.R | 100 ++++++++++++++++++++++-----------
R/Tukey1df.R | 2
R/colormap.R |only
R/halfnorm.R |only
data/Apo.rda |binary
data/BPmonitor.rda |binary
data/Bdish.rda |binary
data/Bff.rda |binary
data/BoxM.rda |binary
data/COdata.rda |binary
data/MPV.rda |binary
data/Naph.rda |binary
data/SPMPV.rda |binary
data/Smotor.rda |binary
data/Tet.rda |binary
data/Treb.rda |binary
data/antifungal.rda |binary
data/apple.rda |binary
data/arso.rda |binary
data/augm.rda |binary
data/bha.rda |binary
data/bioequiv.rda |binary
data/bioeqv.rda |binary
data/blood.rda |binary
data/bread.rda |binary
data/cake.rda |binary
data/cement.rda |binary
data/chem.rda |binary
data/chipman.rda |binary
data/cont.rda |binary
data/cpipe.rda |binary
data/culture.rda |binary
data/dairy.rda |binary
data/drug.rda |binary
data/eptaxr.rda |binary
data/eptaxs2.rda |binary
data/eptaxyb.rda |binary
data/gagerr.rda |binary
data/gear.rda |binary
data/hardwood.rda |binary
data/inject.rda |binary
data/pastry.rda |binary
data/pest.rda |binary
data/pesticide.rda |binary
data/plasma.rda |binary
data/polvdat.rda |binary
data/polymer.rda |binary
data/prodstd.rda |binary
data/qsar.rda |binary
data/rcb.rda |binary
data/residue.rda |binary
data/rubber.rda |binary
data/sausage.rda |binary
data/soup.rda |binary
data/soupmx.rda |binary
data/splitPdes.rda |binary
data/strung.rda |binary
data/strungtile.rda |binary
data/sugarbeet.rda |binary
data/taste.rda |binary
data/teach.rda |binary
data/tile.rda |binary
data/virus.rda |binary
data/volt.rda |binary
data/web.rda |binary
man/Fpower.Rd | 7 --
man/Fpower1.Rd |only
man/Fpower2.Rd |only
man/LGB.Rd | 68 +---------------------
man/LGBc.Rd |only
man/colormap.Rd |only
man/daewr-package.Rd | 2
man/halfnorm.Rd |only
man/volt.Rd | 6 +-
82 files changed, 213 insertions(+), 275 deletions(-)
Title: An R package for the analysis of epidemiological data
Diff between epiR versions 0.9-59 dated 2014-08-06 and 0.9-61 dated 2014-12-17
Description: An R package for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson
Maintainer: Mark Stevenson
DESCRIPTION | 8 ++---
MD5 | 24 +++++++++--------
R/epi.betabuster.r |only
R/epi.conf.R | 16 +++++++++++
R/epi.studysize.R | 69 +++++++++++++++++++++++++++++++++++---------------
man/epi.2by2.Rd | 2 -
man/epi.about.Rd | 4 +-
man/epi.betabuster.Rd |only
man/epi.bohning.Rd | 2 -
man/epi.conf.Rd | 7 +++--
man/epi.ltd.Rd | 2 -
man/epi.stratasize.Rd | 2 -
man/epi.studysize.Rd | 17 +++++-------
man/epi.tests.Rd | 2 -
14 files changed, 102 insertions(+), 53 deletions(-)
Title: Soil Spectroscopy Tools and Reference Models
Diff between soil.spec versions 2.1.3 dated 2013-08-27 and 2.1.4 dated 2014-12-17
Description: Methods and classes for processing and analyzing soil and plant infrared (MIR, alpha-MIR and VISNIR) spectroscopy readings based on the Africa Soil Information Services (AfSIS) project data.
Author: Andrew Sila, Tomislav Hengl and Thomas Terhoeven-Urselmans
Maintainer: Andrew Sila
soil.spec-2.1.3/soil.spec/R/align.col.R |only
soil.spec-2.1.3/soil.spec/R/average.R |only
soil.spec-2.1.3/soil.spec/R/copy.R |only
soil.spec-2.1.3/soil.spec/R/explore.data.R |only
soil.spec-2.1.3/soil.spec/R/plot.regr.R |only
soil.spec-2.1.3/soil.spec/R/pred.regr.R |only
soil.spec-2.1.3/soil.spec/R/regr.R |only
soil.spec-2.1.3/soil.spec/R/summary.regr.R |only
soil.spec-2.1.3/soil.spec/R/view.spectra.R |only
soil.spec-2.1.3/soil.spec/man/align.col.Rd |only
soil.spec-2.1.3/soil.spec/man/average.Rd |only
soil.spec-2.1.3/soil.spec/man/copy.Rd |only
soil.spec-2.1.3/soil.spec/man/explore.data.Rd |only
soil.spec-2.1.3/soil.spec/man/regr.Rd |only
soil.spec-2.1.3/soil.spec/man/view.spectra.Rd |only
soil.spec-2.1.4/soil.spec/DESCRIPTION | 25 -
soil.spec-2.1.4/soil.spec/MD5 | 69 ++--
soil.spec-2.1.4/soil.spec/NAMESPACE | 30 -
soil.spec-2.1.4/soil.spec/R/AAA-classes.R |only
soil.spec-2.1.4/soil.spec/R/ZZZ.R |only
soil.spec-2.1.4/soil.spec/R/fit.SpectraModel.R |only
soil.spec-2.1.4/soil.spec/R/ken.sto.R | 272 ++++++++---------
soil.spec-2.1.4/soil.spec/R/plot.spectra.R |only
soil.spec-2.1.4/soil.spec/R/plot.trans.R | 44 +-
soil.spec-2.1.4/soil.spec/R/predict.SpectraPoints.R |only
soil.spec-2.1.4/soil.spec/R/read.opus.R |only
soil.spec-2.1.4/soil.spec/R/read.spc.R | 5
soil.spec-2.1.4/soil.spec/R/reshape.R |only
soil.spec-2.1.4/soil.spec/R/spec.env.R |only
soil.spec-2.1.4/soil.spec/R/spectra.R |only
soil.spec-2.1.4/soil.spec/R/spectra.outliers.R |only
soil.spec-2.1.4/soil.spec/R/trans.R | 46 +-
soil.spec-2.1.4/soil.spec/R/validate.R |only
soil.spec-2.1.4/soil.spec/data |only
soil.spec-2.1.4/soil.spec/inst |only
soil.spec-2.1.4/soil.spec/man/SpectraPoints.Rd |only
soil.spec-2.1.4/soil.spec/man/afspec.Rd |only
soil.spec-2.1.4/soil.spec/man/afss.Rd |only
soil.spec-2.1.4/soil.spec/man/fit.SpectraModel.Rd |only
soil.spec-2.1.4/soil.spec/man/ken.sto.Rd | 2
soil.spec-2.1.4/soil.spec/man/plot.Spectra.Rd |only
soil.spec-2.1.4/soil.spec/man/predict.SpectraPoints.Rd |only
soil.spec-2.1.4/soil.spec/man/read.opus.Rd |only
soil.spec-2.1.4/soil.spec/man/spec.env.Rd |only
soil.spec-2.1.4/soil.spec/man/spectra.outliers.Rd |only
soil.spec-2.1.4/soil.spec/man/trans.Rd | 18 -
soil.spec-2.1.4/soil.spec/man/wavenumbers.Rd |only
47 files changed, 261 insertions(+), 250 deletions(-)
Title: Slow Feature Analysis in R
Diff between rSFA versions 1.03 dated 2014-02-15 and 1.04 dated 2014-12-17
Description: Slow Feature Analysis in R, ported to R based on the
matlab versions SFA toolkit 1.0 by Pietro Berkes and SFA toolkit
2.8 by Wolfgang Konen for matlab.
Author: Wolfgang Konen
Maintainer: Martin Zaefferer
DESCRIPTION | 12 ++----
MD5 | 92 +++++++++++++++++++++++------------------------
NAMESPACE | 4 +-
NEWS | 6 +++
R/eta.R | 12 +++---
R/sfa.R | 4 +-
R/sfaClassify.R | 2 -
man/addNoisyCopies.Rd | 38 ++++++++-----------
man/customRep.Rd | 12 +++---
man/customRepmat.Rd | 14 +++----
man/customSize.Rd | 13 +++---
man/etaval.Rd | 14 +++----
man/gaussClassifier.Rd | 51 ++++++++++++--------------
man/gaussCreate.Rd | 13 +++---
man/gaussLoad.Rd | 11 +++--
man/gaussSave.Rd | 12 +++---
man/lcovCreate.Rd | 12 +++---
man/lcovFix.Rd | 16 ++++----
man/lcovPca.Rd | 35 ++++++++---------
man/lcovPca2.Rd | 41 +++++++++-----------
man/lcovTransform.Rd | 22 +++++------
man/lcovUpdate.Rd | 17 ++++----
man/nlDim.Rd | 11 +++--
man/nlExpand.Rd | 16 +++-----
man/rSFA-package.Rd | 29 ++++++++------
man/sfa1.Rd | 24 +++++-------
man/sfa1Create.Rd | 22 +++++------
man/sfa1Step.Rd | 43 +++++++++------------
man/sfa2.Rd | 54 +++++++++++----------------
man/sfa2Create.Rd | 48 ++++++++++--------------
man/sfa2Step.Rd | 54 +++++++++++----------------
man/sfaBSh.Rd | 12 +++---
man/sfaCheckCondition.Rd | 11 ++---
man/sfaClassPredict.Rd | 41 +++++++++-----------
man/sfaClassify.Rd | 49 +++++++++++--------------
man/sfaExecute.Rd | 33 ++++++++--------
man/sfaExpand.Rd | 17 ++++----
man/sfaGetHf.Rd | 53 ++++++++++++++-------------
man/sfaGetIntRange.Rd | 9 ++--
man/sfaLoad.Rd | 12 +++---
man/sfaNlRegress.Rd | 31 +++++++--------
man/sfaPBootstrap.Rd | 35 +++++++----------
man/sfaPreproc.Rd | 17 ++++----
man/sfaSave.Rd | 12 +++---
man/sfaStep.Rd | 44 ++++++++--------------
man/sfaTimediff.Rd | 20 ++++------
man/xpDim.Rd | 13 +++---
47 files changed, 546 insertions(+), 617 deletions(-)
Title: Ordination Methods for the Analysis of Beta-Diversity Indices
Diff between recluster versions 2.5 dated 2013-07-31 and 2.7 dated 2014-12-17
Description: Beta-diversity indices provide dissimilarity matrices with particular distribution of data requiring specific treatment. For example the high frequency of ties and zero values in turnover indices produces hierarchical cluster dendrograms whose topology and bootstrap supports are affected by the order of rows in the original matrix. Moreover, biogeographical regionalization can be facilitated by a combination of hierarchical clustering and multi-dimensional scaling. The recluster package provides robust techniques to analyze pattern of similarity in species composition.
Author: Leonardo Dapporto, Matteo Ramazzotti, Simone Fattorini, Roger
Vila, Gerard Talavera, Roger H.L. Dennis
Maintainer: Leonardo Dapporto
recluster-2.5/recluster/R/recluster.group.colours.R |only
recluster-2.7/recluster/DESCRIPTION | 10 +-
recluster-2.7/recluster/MD5 | 62 +++++++++------
recluster-2.7/recluster/NAMESPACE | 16 ++--
recluster-2.7/recluster/R/recluster.col.R | 64 ++++++++++------
recluster-2.7/recluster/R/recluster.dist.R | 12 ++-
recluster-2.7/recluster/R/recluster.expl.R |only
recluster-2.7/recluster/R/recluster.expl.diss.R | 45 +++++------
recluster-2.7/recluster/R/recluster.group.col.R |only
recluster-2.7/recluster/R/recluster.line.R |only
recluster-2.7/recluster/R/recluster.plot.col.R | 14 ++-
recluster-2.7/recluster/R/recluster.plot.sites.col.R | 11 ++
recluster-2.7/recluster/R/recluster.procrustes.R |only
recluster-2.7/recluster/R/recluster.region.R |only
recluster-2.7/recluster/R/recluster.rotate.R |only
recluster-2.7/recluster/R/recluster.test.dist.R |only
recluster-2.7/recluster/man/recluster.Rd | 26 ++++++
recluster-2.7/recluster/man/recluster.boot.Rd | 8 +-
recluster-2.7/recluster/man/recluster.check.Rd | 4 -
recluster-2.7/recluster/man/recluster.col.Rd | 15 +++
recluster-2.7/recluster/man/recluster.cons.Rd | 11 +-
recluster-2.7/recluster/man/recluster.dist.Rd | 9 +-
recluster-2.7/recluster/man/recluster.expl.Rd |only
recluster-2.7/recluster/man/recluster.expl.diss.Rd | 22 +++--
recluster-2.7/recluster/man/recluster.group.col.Rd | 7 +
recluster-2.7/recluster/man/recluster.hist.Rd | 4 -
recluster-2.7/recluster/man/recluster.identify.nodes.Rd | 8 --
recluster-2.7/recluster/man/recluster.line.Rd |only
recluster-2.7/recluster/man/recluster.multi.Rd | 5 -
recluster-2.7/recluster/man/recluster.node.strength.Rd | 15 +--
recluster-2.7/recluster/man/recluster.phybetadiv.Rd | 5 -
recluster-2.7/recluster/man/recluster.plot.Rd | 19 ++--
recluster-2.7/recluster/man/recluster.plot.col.Rd | 34 +++++++-
recluster-2.7/recluster/man/recluster.plot.matrix.Rd | 7 -
recluster-2.7/recluster/man/recluster.plot.sites.col.Rd | 17 ++--
recluster-2.7/recluster/man/recluster.procrustes.Rd |only
recluster-2.7/recluster/man/recluster.region.Rd |only
recluster-2.7/recluster/man/recluster.rotate.Rd |only
recluster-2.7/recluster/man/recluster.test.dist.Rd |only
39 files changed, 280 insertions(+), 170 deletions(-)
Title: Viewing Binary Files
Diff between hexView versions 0.3-2 dated 2010-08-06 and 0.3-3 dated 2014-12-17
Description: Functions to view files in raw binary form like in a hex editor. Additional functions to specify and read arbitrary binary formats.
Author: Paul Murrell
Maintainer: Paul Murrell
ChangeLog | 25 +++++++++++++------------
DESCRIPTION | 10 +++++-----
MD5 |only
R/eviews.R | 2 +-
4 files changed, 19 insertions(+), 18 deletions(-)
Title: Efficient Approximate Bayesian Computation Sampling Schemes
Diff between EasyABC versions 1.3.1 dated 2014-04-04 and 1.4 dated 2014-12-17
Description: Enables launching a series of simulations of a computer code from the R session, and to retrieve the simulation outputs in an appropriate format for post-processing treatments. Five sequential sampling schemes and three coupled-to-MCMC schemes are implemented.
Author: Franck Jabot, Thierry Faure, Nicolas Dumoullin
Maintainer: Nicolas Dumoulin
CHANGELOG | 7
DESCRIPTION | 18
MD5 | 26
NAMESPACE | 1
R/ABC_emulation.R |only
R/ABC_mcmc.R | 17
R/ABC_rejection.R | 14
R/ABC_sequential.R | 27
R/EasyABC-internal.R | 9780 +++++++++++++++++++++++++------------------------
build/vignette.rds |binary
inst/doc/EasyABC.pdf |binary
man/ABC_emulation.Rd |only
man/ABC_mcmc.Rd | 10
man/ABC_sequential.Rd | 36
man/EasyABC-package.Rd | 4
15 files changed, 5151 insertions(+), 4789 deletions(-)
Title: Multi-Model Inference
Diff between MuMIn versions 1.10.5 dated 2014-08-12 and 1.12.1 dated 2014-12-17
Description: Model selection and model averaging based on information criteria
(AICc and alike).
Author: Kamil Bartoń
Maintainer: Kamil Bartoń
MuMIn-1.10.5/MuMIn/tests/_r_squared_glmm.R |only
MuMIn-1.12.1/MuMIn/DESCRIPTION | 25 +--
MuMIn-1.12.1/MuMIn/MD5 | 118 +++++++++--------
MuMIn-1.12.1/MuMIn/NAMESPACE | 50 +++----
MuMIn-1.12.1/MuMIn/NEWS | 48 +++++++
MuMIn-1.12.1/MuMIn/R/Cp.R | 2
MuMIn-1.12.1/MuMIn/R/coefTable.R | 12 +
MuMIn-1.12.1/MuMIn/R/coeffs.R | 26 +--
MuMIn-1.12.1/MuMIn/R/dredge.R | 119 ++++++++---------
MuMIn-1.12.1/MuMIn/R/ext-mark.R | 6
MuMIn-1.12.1/MuMIn/R/ext.R | 20 ++-
MuMIn-1.12.1/MuMIn/R/formulas.R | 2
MuMIn-1.12.1/MuMIn/R/getAllTerms.R | 118 ++++++++++-------
MuMIn-1.12.1/MuMIn/R/importance.R | 2
MuMIn-1.12.1/MuMIn/R/makeArgs.R | 2
MuMIn-1.12.1/MuMIn/R/methods-logLik.R | 8 +
MuMIn-1.12.1/MuMIn/R/methods-nobs.R | 5
MuMIn-1.12.1/MuMIn/R/model.avg.R | 30 +---
MuMIn-1.12.1/MuMIn/R/model.selection.R | 42 +++---
MuMIn-1.12.1/MuMIn/R/nested.R |only
MuMIn-1.12.1/MuMIn/R/pdredge.R | 153 +++++++++++------------
MuMIn-1.12.1/MuMIn/R/plots.R | 90 +++++++++----
MuMIn-1.12.1/MuMIn/R/quasiLik.R | 4
MuMIn-1.12.1/MuMIn/R/r.squaredGLMM.R | 135 +++++++++++---------
MuMIn-1.12.1/MuMIn/R/r.squaredLR.R | 2
MuMIn-1.12.1/MuMIn/R/stdize.R |only
MuMIn-1.12.1/MuMIn/R/substitution.R |only
MuMIn-1.12.1/MuMIn/R/termdeps.R |only
MuMIn-1.12.1/MuMIn/R/updateable.R | 33 +---
MuMIn-1.12.1/MuMIn/R/utils-misc.R | 87 ++-----------
MuMIn-1.12.1/MuMIn/R/utils-models.R | 110 +++++++++++-----
MuMIn-1.12.1/MuMIn/data/Beetle.rda |binary
MuMIn-1.12.1/MuMIn/data/Cement.rda |binary
MuMIn-1.12.1/MuMIn/demo/dredge.subset.R | 4
MuMIn-1.12.1/MuMIn/demo/dredge.varying.R | 1
MuMIn-1.12.1/MuMIn/demo/gees.R | 10 -
MuMIn-1.12.1/MuMIn/demo/pdredge.pcount.R | 2
MuMIn-1.12.1/MuMIn/man/AICc.Rd | 7 -
MuMIn-1.12.1/MuMIn/man/MuMIn-package.Rd | 9 -
MuMIn-1.12.1/MuMIn/man/QIC.Rd | 4
MuMIn-1.12.1/MuMIn/man/beetle.Rd | 15 +-
MuMIn-1.12.1/MuMIn/man/cement.Rd | 4
MuMIn-1.12.1/MuMIn/man/dredge.Rd | 109 +++++++---------
MuMIn-1.12.1/MuMIn/man/exprApply.Rd |only
MuMIn-1.12.1/MuMIn/man/importance.Rd | 3
MuMIn-1.12.1/MuMIn/man/merge.model.selection.Rd | 12 -
MuMIn-1.12.1/MuMIn/man/mod.sel.Rd | 9 -
MuMIn-1.12.1/MuMIn/man/model.avg.Rd | 3
MuMIn-1.12.1/MuMIn/man/nested.Rd |only
MuMIn-1.12.1/MuMIn/man/par.avg.Rd | 2
MuMIn-1.12.1/MuMIn/man/pdredge.Rd | 5
MuMIn-1.12.1/MuMIn/man/plot.Rd |only
MuMIn-1.12.1/MuMIn/man/predict.averaging.Rd | 19 +-
MuMIn-1.12.1/MuMIn/man/r.squaredGLMM.Rd | 10 -
MuMIn-1.12.1/MuMIn/man/stdize.Rd |only
MuMIn-1.12.1/MuMIn/man/subset.model.selection.Rd | 15 +-
MuMIn-1.12.1/MuMIn/man/supported-classes.Rd | 79 ++++++-----
MuMIn-1.12.1/MuMIn/man/updateable.Rd | 41 +++++-
MuMIn-1.12.1/MuMIn/man/weights.Rd | 8 -
MuMIn-1.12.1/MuMIn/tests/_gam.R | 15 ++
MuMIn-1.12.1/MuMIn/tests/classes.R | 12 -
MuMIn-1.12.1/MuMIn/tests/coxme.R | 10 -
MuMIn-1.12.1/MuMIn/tests/parallel.R | 7 -
MuMIn-1.12.1/MuMIn/tests/r_squared_glmm.R |only
MuMIn-1.12.1/MuMIn/tests/unmarked.R | 6
65 files changed, 912 insertions(+), 758 deletions(-)
Title: Forecasting functions for time series and linear models
Diff between forecast versions 5.6 dated 2014-09-24 and 5.7 dated 2014-12-17
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 14 +
DESCRIPTION | 9 -
MD5 | 48 ++---
NAMESPACE | 2
R/bats.R | 2
R/etsforecast.R | 386 +++++++++++++++++++++++-----------------------
R/forecast.R | 24 +-
R/fpp.R | 79 ++++-----
R/graph.R | 17 --
R/lm.R | 6
R/newarima2.R | 7
R/season.R | 92 ++++------
R/simulate.R | 28 ++-
R/tbats.R | 2
inst/CITATION |only
man/Acf.Rd | 9 -
man/bats.Rd | 2
man/findfrequency.Rd |only
man/forecastplot.Rd | 2
man/seasonplot.Rd | 4
man/ses.Rd | 4
man/simulate.Rd | 2
man/tbats.Rd | 2
man/ts.display.Rd | 12 -
src/etsTargetFunction.cpp | 4
src/makeTBATSMatrices.cpp | 2
26 files changed, 395 insertions(+), 364 deletions(-)