Sun, 21 Dec 2014

Package V8 updated to version 0.3 with previous version 0.2 dated 2014-12-15

Title: Embedded JavaScript Engine
Description: V8 is Google's open source, high performance JavaScript engine. It is written in C++ and implements ECMAScript as specified in ECMA-262, 5th edition.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms

Diff between V8 versions 0.2 dated 2014-12-15 and 0.3 dated 2014-12-21

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Package qdapTools updated to version 1.1.0 with previous version 1.0.3 dated 2014-10-04

Title: Tools for the qdap Package
Description: A collection of tools associated with the qdap package that may be useful outside of the context of text analysis.
Author: Bryan Goodrich [ctb], Dason Kurkiewicz [ctb], Kirill Muller [ctb], Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker

Diff between qdapTools versions 1.0.3 dated 2014-10-04 and 1.1.0 dated 2014-12-21

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Package qdapRegex updated to version 0.2.0 with previous version 0.1.2 dated 2014-09-23

Title: Regular Expression Removal, Extraction, and Replacement Tools
Description: A collection of regular expression tools associated with the qdap package that may be useful outside of the context of discourse analysis. Tools include removal/extraction/replacement of abbreviations, dates, dollar amounts, email addresses, hash tags, numbers, percentages, person tags, phone numbers, times, and zip codes.
Author: Jason Gray [ctb], Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker

Diff between qdapRegex versions 0.1.2 dated 2014-09-23 and 0.2.0 dated 2014-12-21

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Package hydrostats updated to version 0.2.3 with previous version 0.2.1 dated 2014-08-20

Title: Hydrologic indices for daily time series data
Description: Calculates a suite of hydrologic indices for daily time series data that are widely used in hydrology and stream ecology.
Author: Nick Bond
Maintainer: Nick Bond

Diff between hydrostats versions 0.2.1 dated 2014-08-20 and 0.2.3 dated 2014-12-21

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New package convevol with initial version 1.0
Package: convevol
Title: Quantifies and assesses the significance of convergent evolution
Version: 1.0
Authors@R: "C. Tristan Stayton [aut, cre]"
Description: Quantifies and assesses the significance of convergent evolution.
Depends: R (>= 3.1.2), ape, geiger, MASS, phytools
Imports: cluster
License: GPL-2
LazyData: true
Packaged: 2014-12-21 20:18:58 UTC; tstayton
Author: "C. Tristan Stayton" [aut, cre]
Maintainer: "C. Tristan Stayton"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-22 05:00:28

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Package MAd updated to version 0.8-2 with previous version 0.8-1 dated 2014-02-02

Title: Meta-Analysis with Mean Differences
Description: A collection of functions for conducting a meta-analysis with mean differences data. It uses recommended procedures as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re

Diff between MAd versions 0.8-1 dated 2014-02-02 and 0.8-2 dated 2014-12-21

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Package AGD updated to version 0.31 with previous version 0.30 dated 2013-07-15

Title: Analysis of Growth Data
Description: Tools for NIHES course EP18 'Analysis of Growth Data', May 22-23 2012, Rotterdam.
Author: Stef van Buuren
Maintainer: Stef van Buuren

Diff between AGD versions 0.30 dated 2013-07-15 and 0.31 dated 2014-12-21

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Package sysfonts updated to version 0.3 with previous version 0.2 dated 2014-02-23

Title: Loading System Fonts into R
Description: This package uses FreeType to load system fonts and Google Fonts (https://www.google.com/fonts) into R. It is supposed to support other packages like R2SWF and showtext.
Author: Yixuan Qiu and authors/contributors of the included fonts. See file AUTHORS for details.
Maintainer: Yixuan Qiu

Diff between sysfonts versions 0.2 dated 2014-02-23 and 0.3 dated 2014-12-21

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Package graphicsQC updated to version 1.0-6 with previous version 1.0-5 dated 2014-02-24

Title: Quality Control for Graphics in R
Description: The package provides functions to generate graphics files, compare them with ``model'' files, and report the results.
Author: Stephen Gardiner and Paul Murrell
Maintainer: Paul Murrell

Diff between graphicsQC versions 1.0-5 dated 2014-02-24 and 1.0-6 dated 2014-12-21

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Package depmix updated to version 0.9.13 with previous version 0.9.12 dated 2014-04-02

Title: Dependent Mixture Models
Description: Fit (multigroup) mixtures of latent Markov models on mixed categorical and continuous (timeseries) data. The Rdonlp2 package can optionally be used for optimization of the log-likelihood and is available from R-forge: https://r-forge.r-project.org/R/?group_id=156
Author: Ingmar Visser
Maintainer: Ingmar Visser

Diff between depmix versions 0.9.12 dated 2014-04-02 and 0.9.13 dated 2014-12-21

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Package adabag updated to version 4.0 with previous version 3.2 dated 2013-08-16

Title: Applies Multiclass AdaBoost.M1, SAMME and Bagging
Description: It implements Freund and Schapire's Adaboost.M1 algorithm and Breiman's Bagging algorithm using classification trees as individual classifiers. Once these classifiers have been trained, they can be used to predict on new data. Also, cross validation estimation of the error can be done. Since version 2.0 the function "margins" is available to calculate the margins for these classifiers. Also a higher flexibility is achieved giving access to the "rpart.control" argument of "rpart". Four important new features were introduced on version 3.0, AdaBoost-SAMME (Zhu et al., 2009) is implemented and a new function "errorevol" shows the error of the ensembles as a function of the number of iterations. In addition, the ensembles can be pruned using the option "newmfinal" in the predict.bagging and predict.boosting functions and the posterior probability of each class for observations can be obtained. Version 3.1 modifies the relative importance measure to take into account the gain of the Gini index given by a variable in each tree and the weights of these trees. Version 4.0 includes the margin-based ordered aggregation for Bagging pruning (Guo and Boukir, 2013) and a function to auto prune the rpart tree. Moreover, three new plots are also available importanceplot, plot.errorevol and plot.margins.
Author: Alfaro, Esteban; Gamez, Matias and Garcia, Noelia; with contributions from Li Guo
Maintainer: Esteban Alfaro

Diff between adabag versions 3.2 dated 2013-08-16 and 4.0 dated 2014-12-21

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Package BH updated to version 1.55.0-1 with previous version 1.54.0-5 dated 2014-11-10

Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel

Diff between BH versions 1.54.0-5 dated 2014-11-10 and 1.55.0-1 dated 2014-12-21

 BH-1.55.0-1/BH/ChangeLog                                                                                   |   15 
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 BH-1.55.0-1/BH/inst/include/boost/accumulators/statistics/weighted_skewness.hpp                            |    4 
 BH-1.55.0-1/BH/inst/include/boost/accumulators/statistics/weighted_tail_mean.hpp                           |    6 
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 BH-1.55.0-1/BH/inst/include/boost/accumulators/statistics/weighted_tail_variate_means.hpp                  |    4 
 BH-1.55.0-1/BH/inst/include/boost/accumulators/statistics/weighted_variance.hpp                            |   10 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/cxx14/equal.hpp                                                |   82 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/cxx14/mismatch.hpp                                             |   19 
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 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/detail/find_format.hpp                                  |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/detail/find_format_all.hpp                              |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/detail/find_format_store.hpp                            |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/detail/find_iterator.hpp                                |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/detail/finder.hpp                                       |    7 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/detail/finder_regex.hpp                                 |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/detail/formatter.hpp                                    |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/detail/util.hpp                                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/erase.hpp                                               |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/find.hpp                                                |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/find_format.hpp                                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/find_iterator.hpp                                       |    9 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/finder.hpp                                              |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/formatter.hpp                                           |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/iter_find.hpp                                           |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/predicate.hpp                                           |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/regex.hpp                                               |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/replace.hpp                                             |    2 
 BH-1.55.0-1/BH/inst/include/boost/algorithm/string/trim.hpp                                                |    2 
 BH-1.55.0-1/BH/inst/include/boost/any.hpp                                                                  |   65 
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 BH-1.55.0-1/BH/inst/include/boost/atomic/detail/base.hpp                                                   |   70 
 BH-1.55.0-1/BH/inst/include/boost/atomic/detail/cas128strong.hpp                                           |only
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 BH-1.55.0-1/BH/inst/include/boost/atomic/detail/config.hpp                                                 |   40 
 BH-1.55.0-1/BH/inst/include/boost/atomic/detail/gcc-alpha.hpp                                              |    2 
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 BH-1.55.0-1/BH/inst/include/boost/atomic/detail/gcc-x86.hpp                                                |  573 +-
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 BH-1.55.0-1/BH/inst/include/boost/atomic/detail/linux-arm.hpp                                              |    3 
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 BH-1.55.0-1/BH/inst/include/boost/atomic/detail/type-classification.hpp                                    |    4 
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 BH-1.55.0-1/BH/inst/include/boost/circular_buffer/base.hpp                                                 |  724 +-
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 BH-1.55.0-1/BH/inst/include/boost/circular_buffer/space_optimized.hpp                                      |  481 +
 BH-1.55.0-1/BH/inst/include/boost/config.hpp                                                               |   17 
 BH-1.55.0-1/BH/inst/include/boost/config/auto_link.hpp                                                     |    8 
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 BH-1.55.0-1/BH/inst/include/boost/config/compiler/cray.hpp                                                 |    5 
 BH-1.55.0-1/BH/inst/include/boost/config/compiler/digitalmars.hpp                                          |   25 
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 BH-1.55.0-1/BH/inst/include/boost/config/compiler/mpw.hpp                                                  |   11 
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 BH-1.55.0-1/BH/inst/include/boost/config/compiler/pgi.hpp                                                  |    6 
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 BH-1.55.0-1/BH/inst/include/boost/container/deque.hpp                                                      |  576 --
 BH-1.55.0-1/BH/inst/include/boost/container/detail/adaptive_node_pool_impl.hpp                             |    2 
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 BH-1.55.0-1/BH/inst/include/boost/container/detail/node_pool_impl.hpp                                      |    2 
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 BH-1.55.0-1/BH/inst/include/boost/container/detail/type_traits.hpp                                         |    2 
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 BH-1.55.0-1/BH/inst/include/boost/container/flat_map.hpp                                                   |   41 
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 BH-1.55.0-1/BH/inst/include/boost/container/scoped_allocator_fwd.hpp                                       |    2 
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 BH-1.55.0-1/BH/inst/include/boost/date_time/time_facet.hpp                                                 |    6 
 BH-1.55.0-1/BH/inst/include/boost/date_time/tz_db_base.hpp                                                 |    2 
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 BH-1.55.0-1/BH/inst/include/boost/detail/winapi                                                            |only
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 BH-1.55.0-1/BH/inst/include/boost/fusion/view/iterator_range/detail/segmented_iterator_range.hpp           |    8 
 BH-1.55.0-1/BH/inst/include/boost/fusion/view/nview/nview.hpp                                              |    2 
 BH-1.55.0-1/BH/inst/include/boost/fusion/view/zip_view/detail/value_at_impl.hpp                            |    2 
 BH-1.55.0-1/BH/inst/include/boost/fusion/view/zip_view/detail/value_of_impl.hpp                            |    2 
 BH-1.55.0-1/BH/inst/include/boost/fusion/view/zip_view/zip_view.hpp                                        |    4 
 BH-1.55.0-1/BH/inst/include/boost/geometry                                                                 |only
 BH-1.55.0-1/BH/inst/include/boost/geometry.hpp                                                             |only
 BH-1.55.0-1/BH/inst/include/boost/graph/accounting.hpp                                                     |only
 BH-1.55.0-1/BH/inst/include/boost/graph/breadth_first_search.hpp                                           |   19 
 BH-1.55.0-1/BH/inst/include/boost/graph/detail/adjacency_list.hpp                                          |    1 
 BH-1.55.0-1/BH/inst/include/boost/graph/dijkstra_shortest_paths.hpp                                        |only
 BH-1.55.0-1/BH/inst/include/boost/graph/distributed/breadth_first_search.hpp                               |    3 
 BH-1.55.0-1/BH/inst/include/boost/graph/distributed/concepts.hpp                                           |    4 
 BH-1.55.0-1/BH/inst/include/boost/graph/distributed/crauser_et_al_shortest_paths.hpp                       |only
 BH-1.55.0-1/BH/inst/include/boost/graph/distributed/detail/dijkstra_shortest_paths.hpp                     |only
 BH-1.55.0-1/BH/inst/include/boost/graph/distributed/detail/remote_update_set.hpp                           |only
 BH-1.55.0-1/BH/inst/include/boost/graph/distributed/dijkstra_shortest_paths.hpp                            |only
 BH-1.55.0-1/BH/inst/include/boost/graph/distributed/eager_dijkstra_shortest_paths.hpp                      |only
 BH-1.55.0-1/BH/inst/include/boost/graph/exception.hpp                                                      |only
 BH-1.55.0-1/BH/inst/include/boost/graph/graph_traits.hpp                                                   |    8 
 BH-1.55.0-1/BH/inst/include/boost/graph/named_function_params.hpp                                          |    1 
 BH-1.55.0-1/BH/inst/include/boost/graph/relax.hpp                                                          |only
 BH-1.55.0-1/BH/inst/include/boost/graph/visitors.hpp                                                       |    3 
 BH-1.55.0-1/BH/inst/include/boost/heap/d_ary_heap.hpp                                                      |    2 
 BH-1.55.0-1/BH/inst/include/boost/heap/detail/heap_node.hpp                                                |    1 
 BH-1.55.0-1/BH/inst/include/boost/heap/detail/mutable_heap.hpp                                             |   14 
 BH-1.55.0-1/BH/inst/include/boost/integer_traits.hpp                                                       |    2 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/atomic.hpp                                           |    2 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/intermodule_singleton_common.hpp                     |    9 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/managed_open_or_create_impl.hpp                      |   10 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/os_thread_functions.hpp                              |  377 +
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/robust_emulation.hpp                                 |   16 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/tmp_dir_helpers.hpp                                  |    2 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/win32_api.hpp                                        |  119 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/windows_intermodule_singleton.hpp                    |    5 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/detail/workaround.hpp                                       |   21 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/errors.hpp                                                  |    2 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/segment_manager.hpp                                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/smart_ptr/detail/sp_counted_impl.hpp                        |    9 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/streams/bufferstream.hpp                                    |  137 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/streams/vectorstream.hpp                                    |  113 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/file_lock.hpp                                          |    8 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/named_mutex.hpp                                        |   10 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/posix/mutex.hpp                                        |    4 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/posix/recursive_mutex.hpp                              |    5 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/posix/semaphore_wrapper.hpp                            |    4 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/spin/condition.hpp                                     |   13 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/spin/mutex.hpp                                         |    7 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/spin/semaphore.hpp                                     |    9 
 BH-1.55.0-1/BH/inst/include/boost/interprocess/sync/spin/wait.hpp                                          |only
 BH-1.55.0-1/BH/inst/include/boost/intrusive/any_hook.hpp                                                   |   27 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/avl_set.hpp                                                    | 2682 +--------
 BH-1.55.0-1/BH/inst/include/boost/intrusive/avl_set_hook.hpp                                               |   14 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/avltree.hpp                                                    | 1860 +-----
 BH-1.55.0-1/BH/inst/include/boost/intrusive/avltree_algorithms.hpp                                         |  665 --
 BH-1.55.0-1/BH/inst/include/boost/intrusive/bs_set.hpp                                                     |only
 BH-1.55.0-1/BH/inst/include/boost/intrusive/bs_set_hook.hpp                                                |   24 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/bstree.hpp                                                     |only
 BH-1.55.0-1/BH/inst/include/boost/intrusive/bstree_algorithms.hpp                                          |only
 BH-1.55.0-1/BH/inst/include/boost/intrusive/circular_list_algorithms.hpp                                   |   13 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/circular_slist_algorithms.hpp                                  |   13 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/derivation_value_traits.hpp                                    |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/any_node_and_algorithms.hpp                             |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/assert.hpp                                              |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/avltree_node.hpp                                        |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/clear_on_destructor_base.hpp                            |    8 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/common_slist_algorithms.hpp                             |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/config_begin.hpp                                        |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/config_end.hpp                                          |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/ebo_functor_holder.hpp                                  |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/function_detector.hpp                                   |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/generic_hook.hpp                                        |  167 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/has_member_function_callable_with.hpp                   |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/hashtable_node.hpp                                      |  160 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/is_stateful_value_traits.hpp                            |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/list_node.hpp                                           |   92 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/memory_util.hpp                                         |    6 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/mpl.hpp                                                 |   21 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/parent_from_member.hpp                                  |   28 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/preprocessor.hpp                                        |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/rbtree_node.hpp                                         |    4 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/slist_node.hpp                                          |   88 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/transform_iterator.hpp                                  |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/tree_node.hpp                                           |   83 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/utilities.hpp                                           |  696 +-
 BH-1.55.0-1/BH/inst/include/boost/intrusive/detail/workaround.hpp                                          |    6 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/hashtable.hpp                                                  | 1839 +++---
 BH-1.55.0-1/BH/inst/include/boost/intrusive/intrusive_fwd.hpp                                              |  360 -
 BH-1.55.0-1/BH/inst/include/boost/intrusive/linear_slist_algorithms.hpp                                    |   13 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/link_mode.hpp                                                  |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/list.hpp                                                       |  134 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/list_hook.hpp                                                  |   14 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/member_value_traits.hpp                                        |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/options.hpp                                                    |  144 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/parent_from_member.hpp                                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/pointer_plus_bits.hpp                                          |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/pointer_traits.hpp                                             |    6 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/priority_compare.hpp                                           |   17 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/rbtree.hpp                                                     | 1825 +-----
 BH-1.55.0-1/BH/inst/include/boost/intrusive/rbtree_algorithms.hpp                                          |  721 --
 BH-1.55.0-1/BH/inst/include/boost/intrusive/set.hpp                                                        | 2621 +--------
 BH-1.55.0-1/BH/inst/include/boost/intrusive/set_hook.hpp                                                   |   14 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/sg_set.hpp                                                     | 2735 +--------
 BH-1.55.0-1/BH/inst/include/boost/intrusive/sgtree.hpp                                                     | 1783 +-----
 BH-1.55.0-1/BH/inst/include/boost/intrusive/sgtree_algorithms.hpp                                          |  735 --
 BH-1.55.0-1/BH/inst/include/boost/intrusive/slist.hpp                                                      |  188 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/slist_hook.hpp                                                 |   14 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/splay_set.hpp                                                  | 2861 ++--------
 BH-1.55.0-1/BH/inst/include/boost/intrusive/splay_set_hook.hpp                                             |   68 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/splaytree.hpp                                                  | 1867 +-----
 BH-1.55.0-1/BH/inst/include/boost/intrusive/splaytree_algorithms.hpp                                       |  849 --
 BH-1.55.0-1/BH/inst/include/boost/intrusive/treap.hpp                                                      | 1335 +---
 BH-1.55.0-1/BH/inst/include/boost/intrusive/treap_algorithms.hpp                                           |  479 -
 BH-1.55.0-1/BH/inst/include/boost/intrusive/treap_set.hpp                                                  | 2626 +--------
 BH-1.55.0-1/BH/inst/include/boost/intrusive/trivial_value_traits.hpp                                       |    2 
 BH-1.55.0-1/BH/inst/include/boost/intrusive/unordered_set.hpp                                              |  383 -
 BH-1.55.0-1/BH/inst/include/boost/intrusive/unordered_set_hook.hpp                                         |   20 
 BH-1.55.0-1/BH/inst/include/boost/lexical_cast.hpp                                                         |   49 
 BH-1.55.0-1/BH/inst/include/boost/math/bindings/mpfr.hpp                                                   |   24 
 BH-1.55.0-1/BH/inst/include/boost/math/constants/constants.hpp                                             |   16 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/beta.hpp                                              |    2 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/binomial.hpp                                          |   10 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/cauchy.hpp                                            |    8 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/detail/common_error_handling.hpp                      |    7 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/detail/inv_discrete_quantile.hpp                      |  158 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/exponential.hpp                                       |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/gamma.hpp                                             |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/hypergeometric.hpp                                    |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/inverse_chi_squared.hpp                               |    2 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/inverse_gamma.hpp                                     |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/inverse_gaussian.hpp                                  |   10 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/laplace.hpp                                           |    4 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/logistic.hpp                                          |   42 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/lognormal.hpp                                         |    8 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/negative_binomial.hpp                                 |    4 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/non_central_chi_squared.hpp                           |   45 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/non_central_t.hpp                                     |   22 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/normal.hpp                                            |   34 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/pareto.hpp                                            |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/poisson.hpp                                           |   68 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/rayleigh.hpp                                          |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/skew_normal.hpp                                       |   10 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/students_t.hpp                                        |   12 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/triangular.hpp                                        |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/uniform.hpp                                           |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/distributions/weibull.hpp                                           |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/policies/error_handling.hpp                                         |   31 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/airy.hpp                                          |    8 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/bessel.hpp                                        |   14 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/beta.hpp                                          |   45 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_ik.hpp                              |   17 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/detail/bessel_jy_series.hpp                       |    6 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/detail/ibeta_inverse.hpp                          |   73 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/detail/t_distribution_inv.hpp                     |   19 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/ellint_1.hpp                                      |    7 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/ellint_2.hpp                                      |    7 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/ellint_3.hpp                                      |    7 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/ellint_rj.hpp                                     |    2 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/fpclassify.hpp                                    |    8 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/gamma.hpp                                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/math_fwd.hpp                                      |    4 
 BH-1.55.0-1/BH/inst/include/boost/math/special_functions/sign.hpp                                          |   10 
 BH-1.55.0-1/BH/inst/include/boost/math/tools/big_constant.hpp                                              |    4 
 BH-1.55.0-1/BH/inst/include/boost/math/tools/fraction.hpp                                                  |    2 
 BH-1.55.0-1/BH/inst/include/boost/math/tools/promotion.hpp                                                 |   27 
 BH-1.55.0-1/BH/inst/include/boost/math/tools/tuple.hpp                                                     |    2 
 BH-1.55.0-1/BH/inst/include/boost/move/algorithm.hpp                                                       |    1 
 BH-1.55.0-1/BH/inst/include/boost/move/core.hpp                                                            |    7 
 BH-1.55.0-1/BH/inst/include/boost/move/detail/move_helpers.hpp                                             |   26 
 BH-1.55.0-1/BH/inst/include/boost/move/traits.hpp                                                          |   12 
 BH-1.55.0-1/BH/inst/include/boost/move/utility.hpp                                                         |   22 
 BH-1.55.0-1/BH/inst/include/boost/mpi/collectives.hpp                                                      |   30 
 BH-1.55.0-1/BH/inst/include/boost/mpi/collectives/all_reduce.hpp                                           |   31 
 BH-1.55.0-1/BH/inst/include/boost/mpi/collectives/gather.hpp                                               |    7 
 BH-1.55.0-1/BH/inst/include/boost/mpi/collectives/reduce.hpp                                               |   19 
 BH-1.55.0-1/BH/inst/include/boost/mpi/communicator.hpp                                                     |    3 
 BH-1.55.0-1/BH/inst/include/boost/mpi/config.hpp                                                           |    7 
 BH-1.55.0-1/BH/inst/include/boost/mpi/detail/binary_buffer_iprimitive.hpp                                  |    4 
 BH-1.55.0-1/BH/inst/include/boost/mpi/detail/forward_skeleton_iarchive.hpp                                 |    1 
 BH-1.55.0-1/BH/inst/include/boost/mpi/detail/ignore_iprimitive.hpp                                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/mpi/detail/ignore_oprimitive.hpp                                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/mpi/detail/mpi_datatype_primitive.hpp                                    |   27 
 BH-1.55.0-1/BH/inst/include/boost/mpi/detail/packed_iprimitive.hpp                                         |    4 
 BH-1.55.0-1/BH/inst/include/boost/mpi/detail/packed_oprimitive.hpp                                         |    3 
 BH-1.55.0-1/BH/inst/include/boost/mpi/environment.hpp                                                      |   84 
 BH-1.55.0-1/BH/inst/include/boost/mpi/inplace.hpp                                                          |only
 BH-1.55.0-1/BH/inst/include/boost/mpi/packed_iarchive.hpp                                                  |   44 
 BH-1.55.0-1/BH/inst/include/boost/mpi/packed_oarchive.hpp                                                  |   39 
 BH-1.55.0-1/BH/inst/include/boost/mpl/assert.hpp                                                           |    8 
 BH-1.55.0-1/BH/inst/include/boost/multi_index/detail/do_not_copy_elements_tag.hpp                          |only
 BH-1.55.0-1/BH/inst/include/boost/multi_index/detail/index_base.hpp                                        |  100 
 BH-1.55.0-1/BH/inst/include/boost/multi_index/detail/scope_guard.hpp                                       |    3 
 BH-1.55.0-1/BH/inst/include/boost/multi_index/detail/vartempl_support.hpp                                  |only
 BH-1.55.0-1/BH/inst/include/boost/multi_index/hashed_index.hpp                                             |  158 
 BH-1.55.0-1/BH/inst/include/boost/multi_index/ordered_index.hpp                                            |  153 
 BH-1.55.0-1/BH/inst/include/boost/multi_index/sequenced_index.hpp                                          |  199 
 BH-1.55.0-1/BH/inst/include/boost/multi_index_container.hpp                                                |  330 +
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/cpp_dec_float.hpp                                         |   90 
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/detail/default_ops.hpp                                    |  172 
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/detail/digits.hpp                                         |only
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/detail/et_ops.hpp                                         |   13 
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/detail/functions/constants.hpp                            |    1 
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/detail/functions/pow.hpp                                  |   61 
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/detail/functions/trig.hpp                                 |  101 
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/detail/generic_interconvert.hpp                           |    1 
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/detail/integer_ops.hpp                                    |only
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/gmp.hpp                                                   |only
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/mpfr.hpp                                                  |only
 BH-1.55.0-1/BH/inst/include/boost/multiprecision/number.hpp                                                |   89 
 BH-1.55.0-1/BH/inst/include/boost/phoenix/function/function.hpp                                            |    7 
 BH-1.55.0-1/BH/inst/include/boost/polygon                                                                  |only
 BH-1.55.0-1/BH/inst/include/boost/predef                                                                   |only
 BH-1.55.0-1/BH/inst/include/boost/preprocessor/tuple/rem.hpp                                               |    1 
 BH-1.55.0-1/BH/inst/include/boost/program_options                                                          |only
 BH-1.55.0-1/BH/inst/include/boost/program_options.hpp                                                      |only
 BH-1.55.0-1/BH/inst/include/boost/progress.hpp                                                             |    4 
 BH-1.55.0-1/BH/inst/include/boost/property_map/parallel/caching_property_map.hpp                           |only
 BH-1.55.0-1/BH/inst/include/boost/property_map/property_map.hpp                                            |    3 
 BH-1.55.0-1/BH/inst/include/boost/property_map/property_map_iterator.hpp                                   |only
 BH-1.55.0-1/BH/inst/include/boost/random/detail/integer_log2.hpp                                           |    2 
 BH-1.55.0-1/BH/inst/include/boost/random/discrete_distribution.hpp                                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/random/piecewise_constant_distribution.hpp                               |    2 
 BH-1.55.0-1/BH/inst/include/boost/random/piecewise_linear_distribution.hpp                                 |    2 
 BH-1.55.0-1/BH/inst/include/boost/random/seed_seq.hpp                                                      |    2 
 BH-1.55.0-1/BH/inst/include/boost/random/subtract_with_carry.hpp                                           |    2 
 BH-1.55.0-1/BH/inst/include/boost/ratio/detail/ratio_io.hpp                                                |only
 BH-1.55.0-1/BH/inst/include/boost/ratio/ratio_io.hpp                                                       |only
 BH-1.55.0-1/BH/inst/include/boost/ratio/ratio_static_string.hpp                                            |only
 BH-1.55.0-1/BH/inst/include/boost/rational.hpp                                                             |   12 
 BH-1.55.0-1/BH/inst/include/boost/regex/v4/perl_matcher_non_recursive.hpp                                  |   24 
 BH-1.55.0-1/BH/inst/include/boost/regex/v4/perl_matcher_recursive.hpp                                      |   16 
 BH-1.55.0-1/BH/inst/include/boost/smart_ptr/detail/yield_k.hpp                                             |    1 
 BH-1.55.0-1/BH/inst/include/boost/smart_ptr/intrusive_ref_counter.hpp                                      |only
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/karma/directive/omit.hpp                                     |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/karma/nonterminal/rule.hpp                                   |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/karma/numeric/detail/numeric_utils.hpp                       |   16 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/karma/numeric/detail/real_utils.hpp                          |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/karma/numeric/real_policies.hpp                              |   13 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/karma/operator/alternative.hpp                               |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/karma/operator/sequence.hpp                                  |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/karma/string/symbols.hpp                                     |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/lex/lexer/lexer.hpp                                          |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/phoenix/core/value.hpp                                       |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/phoenix/function/function.hpp                                |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/phoenix/object/construct.hpp                                 |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/action/action.hpp                                         |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/auxiliary/attr.hpp                                        |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/auxiliary/attr_cast.hpp                                   |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/auxiliary/eps.hpp                                         |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/auxiliary/lazy.hpp                                        |   14 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/binary/binary.hpp                                         |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/char/char.hpp                                             |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/char/char_parser.hpp                                      |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/detail/alternative_function.hpp                           |   14 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/detail/expect_function.hpp                                |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/detail/fail_function.hpp                                  |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/detail/pass_container.hpp                                 |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/detail/pass_function.hpp                                  |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/detail/permute_function.hpp                               |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/detail/unused_skipper.hpp                                 |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/as.hpp                                          |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/hold.hpp                                        |   10 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/lexeme.hpp                                      |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/matches.hpp                                     |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/no_skip.hpp                                     |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/omit.hpp                                        |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/raw.hpp                                         |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/repeat.hpp                                      |   28 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/directive/skip.hpp                                        |   16 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/nonterminal/debug_handler.hpp                             |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/nonterminal/detail/parameterized.hpp                      |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/nonterminal/detail/parser_binder.hpp                      |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/nonterminal/error_handler.hpp                             |    6 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/nonterminal/grammar.hpp                                   |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/nonterminal/rule.hpp                                      |   28 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/nonterminal/success_handler.hpp                           |    6 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/numeric/bool.hpp                                          |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/numeric/bool_policies.hpp                                 |   16 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/numeric/int.hpp                                           |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/numeric/numeric_utils.hpp                                 |   22 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/numeric/real.hpp                                          |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/numeric/real_policies.hpp                                 |   20 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/numeric/uint.hpp                                          |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/alternative.hpp                                  |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/and_predicate.hpp                                |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/difference.hpp                                   |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/expect.hpp                                       |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/kleene.hpp                                       |   10 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/list.hpp                                         |   10 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/not_predicate.hpp                                |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/optional.hpp                                     |   16 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/permutation.hpp                                  |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/plus.hpp                                         |   10 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/sequence_base.hpp                                |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/operator/sequential_or.hpp                                |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/parse_attr.hpp                                            |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/reference.hpp                                             |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp                         |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/string/detail/tst.hpp                                     |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/string/lit.hpp                                            |   12 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/qi/string/symbols.hpp                                        |   14 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/action_dispatch.hpp                                  |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/attributes.hpp                                       |    8 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/char_encoding/unicode/query.hpp                      |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/char_set/range.hpp                                   |    2 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/context.hpp                                          |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/detail/scoped_enum_emulation.hpp                     |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/detail/what_function.hpp                             |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/extended_variant.hpp                                 |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/info.hpp                                             |   36 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/iterators/detail/buffering_input_iterator_policy.hpp |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/nonterminal/expand_arg.hpp                           |    4 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/numeric_traits.hpp                                   |   13 
 BH-1.55.0-1/BH/inst/include/boost/spirit/home/support/terminal.hpp                                         |   58 
 BH-1.55.0-1/BH/inst/include/boost/spirit/repository/home/qi/operator/detail/keywords.hpp                   |   11 
 BH-1.55.0-1/BH/inst/include/boost/thread/barrier.hpp                                                       |  216 
 BH-1.55.0-1/BH/inst/include/boost/thread/detail/config.hpp                                                 |    5 
 BH-1.55.0-1/BH/inst/include/boost/thread/detail/is_convertible.hpp                                         |    7 
 BH-1.55.0-1/BH/inst/include/boost/thread/detail/memory.hpp                                                 |    7 
 BH-1.55.0-1/BH/inst/include/boost/thread/detail/thread.hpp                                                 |   13 
 BH-1.55.0-1/BH/inst/include/boost/thread/future.hpp                                                        | 1727 +++---
 BH-1.55.0-1/BH/inst/include/boost/thread/lock_types.hpp                                                    |    6 
 BH-1.55.0-1/BH/inst/include/boost/thread/pthread/condition_variable.hpp                                    |   16 
 BH-1.55.0-1/BH/inst/include/boost/thread/pthread/condition_variable_fwd.hpp                                |   18 
 BH-1.55.0-1/BH/inst/include/boost/thread/pthread/thread_data.hpp                                           |    6 
 BH-1.55.0-1/BH/inst/include/boost/thread/win32/condition_variable.hpp                                      |   30 
 BH-1.55.0-1/BH/inst/include/boost/thread/win32/once.hpp                                                    |    2 
 BH-1.55.0-1/BH/inst/include/boost/thread/win32/thread_data.hpp                                             |    8 
 BH-1.55.0-1/BH/inst/include/boost/thread/win32/thread_primitives.hpp                                       |    3 
 BH-1.55.0-1/BH/inst/include/boost/throw_exception.hpp                                                      |    7 
 BH-1.55.0-1/BH/inst/include/boost/type_erasure                                                             |only
 BH-1.55.0-1/BH/inst/include/boost/type_traits.hpp                                                          |    1 
 BH-1.55.0-1/BH/inst/include/boost/type_traits/is_copy_constructible.hpp                                    |only
 BH-1.55.0-1/BH/inst/include/boost/type_traits/is_integral.hpp                                              |    6 
 BH-1.55.0-1/BH/inst/include/boost/unordered/detail/allocate.hpp                                            |   54 
 BH-1.55.0-1/BH/inst/include/boost/unordered/detail/buckets.hpp                                             |   80 
 BH-1.55.0-1/BH/inst/include/boost/unordered/detail/extract_key.hpp                                         |   32 
 BH-1.55.0-1/BH/inst/include/boost/unordered/detail/table.hpp                                               |    4 
 BH-1.55.0-1/BH/inst/include/boost/unordered/detail/unique.hpp                                              |    2 
 BH-1.55.0-1/BH/inst/include/boost/unordered/detail/util.hpp                                                |    5 
 BH-1.55.0-1/BH/inst/include/boost/unordered/unordered_map.hpp                                              |   12 
 BH-1.55.0-1/BH/inst/include/boost/unordered/unordered_set.hpp                                              |   12 
 BH-1.55.0-1/BH/inst/include/boost/utility/base_from_member.hpp                                             |   73 
 BH-1.55.0-1/BH/inst/include/boost/utility/declval.hpp                                                      |   41 
 BH-1.55.0-1/BH/inst/include/boost/utility/detail/result_of_iterate.hpp                                     |   23 
 BH-1.55.0-1/BH/inst/include/boost/utility/empty_deleter.hpp                                                |only
 BH-1.55.0-1/BH/inst/include/boost/utility/explicit_operator_bool.hpp                                       |only
 BH-1.55.0-1/BH/inst/include/boost/utility/result_of.hpp                                                    |   29 
 BH-1.55.0-1/BH/inst/include/boost/variant/detail/move.hpp                                                  |   92 
 BH-1.55.0-1/BH/inst/include/boost/variant/get.hpp                                                          |    7 
 BH-1.55.0-1/BH/inst/include/boost/variant/variant.hpp                                                      |   81 
 BH-1.55.0-1/BH/inst/include/boost/variant/visitor_ptr.hpp                                                  |    3 
 BH-1.55.0-1/BH/inst/include/boost/version.hpp                                                              |    4 
 BH-1.55.0-1/BH/man/BH-package.Rd                                                                           |    4 
 614 files changed, 19549 insertions(+), 29752 deletions(-)

More information about BH at CRAN
Permanent link

Package TBEST (with last version 3.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-05-30 3.0
2014-02-24 1.4
2014-01-17 1.2
2013-11-17 1.0

Permanent link
Package CORE (with last version 2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-06-02 2.0
2013-07-25 1.2
2013-06-23 1.1
2013-06-21 1.0

Permanent link
Package spfrontier updated to version 0.1.12 with previous version 0.1.10 dated 2014-07-03

Title: Spatial Stochastic Frontier models estimation
Description: A set of tools for estimation of various spatial specifications of stochastic frontier models
Author: Dmitry Pavlyuk
Maintainer: Dmitry Pavlyuk

Diff between spfrontier versions 0.1.10 dated 2014-07-03 and 0.1.12 dated 2014-12-21

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 MD5                         |   40 ++++++------
 NAMESPACE                   |    5 -
 NEWS                        |    6 +
 R/spfrontier.R              |  136 +++++++++++++++++++++++++++++++++-----------
 R/spfrontier_mle.R          |   80 ++++++++++++-------------
 R/test_ezsim.R              |   21 ++++--
 R/util_mle.R                |   47 +++++++++++----
 data/airports.greece.rda    |binary
 data/airports.rda           |binary
 demo/airports.R             |   95 ++++++------------------------
 demo/frontier_comparison.R  |   10 ++-
 demo/simulation.R           |   68 +++++++++++++---------
 man/ModelEstimates-class.Rd |   20 ++----
 man/data-airports-greece.Rd |   15 ++--
 man/data-airports.Rd        |   25 +++-----
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 man/simulation.Rd           |   63 +++++++-------------
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 man/spfrontier.Rd           |   88 +++++++++++-----------------
 man/util-misc.Rd            |   57 ++++++------------
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More information about spfrontier at CRAN
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Package rgl updated to version 0.95.1201 with previous version 0.95.1158 dated 2014-11-12

Title: 3D visualization device system (OpenGL)
Description: Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler , Duncan Murdoch , and others (see README)
Maintainer: Duncan Murdoch

Diff between rgl versions 0.95.1158 dated 2014-11-12 and 0.95.1201 dated 2014-12-21

 rgl-0.95.1158/rgl/inst/WebGL/CanvasMatrix.js |only
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 rgl-0.95.1201/rgl/R/bgplot3d.R               |   17 +-
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 rgl-0.95.1201/rgl/R/webGL.R                  |  154 +++++++++++++++-------
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 rgl-0.95.1201/rgl/src/rglview.cpp            |  103 +++++++++------
 rgl-0.95.1201/rgl/src/subscene.cpp           |   66 ++++++---
 rgl-0.95.1201/rgl/src/subscene.h             |   17 ++
 rgl-0.95.1201/rgl/src/x11gui.cpp             |    8 -
 rgl-0.95.1201/rgl/tests/demos.R              |    3 
 rgl-0.95.1201/rgl/vignettes                  |only
 87 files changed, 1203 insertions(+), 741 deletions(-)

More information about rgl at CRAN
Permanent link

Package PredictABEL updated to version 1.2-2 with previous version 1.2-1 dated 2012-07-27

Title: Assessment of Risk Prediction Models
Description: PredictABEL includes functions to assess the performance of risk models. The package contains functions for the various measures that are used in empirical studies, including univariate and multivariate odds ratios (OR) of the predictors, the c-statistic (or area under the receiver operating characteristic (ROC) curve (AUC)), Hosmer-Lemeshow goodness of fit test, reclassification table, net reclassification improvement (NRI) and integrated discrimination improvement (IDI). Also included are functions to create plots, such as risk distributions, ROC curves, calibration plot, discrimination box plot and predictiveness curves. In addition to functions to assess the performance of risk models, the package includes functions to obtain weighted and unweighted risk scores as well as predicted risks using logistic regression analysis. These logistic regression functions are specifically written for models that include genetic variables, but they can also be applied to models that are based on non-genetic risk factors only. Finally, the package includes function to construct a simulated dataset with genotypes, genetic risks, and disease status for a hypothetical population, which is used for the evaluation of genetic risk models.
Author: Suman Kundu, Yurii S. Aulchenko, A. Cecile J.W. Janssens
Maintainer: Suman Kundu

Diff between PredictABEL versions 1.2-1 dated 2012-07-27 and 1.2-2 dated 2014-12-21

 DESCRIPTION     |   52 ++++++++++++++++++++++++----------------------------
 MD5             |    4 ++--
 R/PredictABEL.R |    2 +-
 3 files changed, 27 insertions(+), 31 deletions(-)

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Package OPI updated to version 2.1 with previous version 1.6 dated 2013-11-15

Title: Open Perimetry Interface
Description: Implementation of the Open Perimetry Interface (OPI) for simulating and controlling visual field machines using R. The OPI is a standard for interfacing with visual field testing machines (perimeters). It specifies basic functions that allow many visual field tests to be constructed. As of December 2014 it is fully implemented on the Octopus 600 and Octopus 900 and partially on the Heidelberg Edge Perimeter and the Kowa AP 7000. It also has a cousin: the R package visualFields, which has tools for analysing and manipulating visual field data.
Author: Andrew Turpin, David Lawson
Maintainer: Andrew Turpin

Diff between OPI versions 1.6 dated 2013-11-15 and 2.1 dated 2014-12-21

 OPI-1.6/OPI/R/octopus900.r            |only
 OPI-2.1/OPI/ChangeLog                 |   16 +++++
 OPI-2.1/OPI/DESCRIPTION               |   15 ++---
 OPI-2.1/OPI/MD5                       |   46 +++++++++--------
 OPI-2.1/OPI/NAMESPACE                 |   92 +++++++++++++++++++---------------
 OPI-2.1/OPI/R/dbTocd.r                |   20 +++----
 OPI-2.1/OPI/R/fourTwo.r               |only
 OPI-2.1/OPI/R/kowaAP7000Client.r      |only
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 OPI-2.1/OPI/R/octopus900Client.r      |only
 OPI-2.1/OPI/R/opi.r                   |   32 +++++++++--
 OPI-2.1/OPI/R/simG.r                  |   10 ++-
 OPI-2.1/OPI/R/simH.r                  |   26 +++++++--
 OPI-2.1/OPI/R/simH_RT.r               |   29 ++++++++--
 OPI-2.1/OPI/R/zest.r                  |    7 +-
 OPI-2.1/OPI/man/FT.Rd                 |    3 -
 OPI-2.1/OPI/man/OPI-package.Rd        |    2 
 OPI-2.1/OPI/man/cdTodb.Rd             |   10 ++-
 OPI-2.1/OPI/man/chooseOpi.Rd          |    1 
 OPI-2.1/OPI/man/dbTocd.Rd             |   14 +++--
 OPI-2.1/OPI/man/fourTwo.Rd            |only
 OPI-2.1/OPI/man/opiInitialize.Rd      |   85 +++++++++++++++++++++++++------
 OPI-2.1/OPI/man/opiKineticStimulus.Rd |   13 ++++
 OPI-2.1/OPI/man/opiPresent.Rd         |   42 ++++++++++++++-
 OPI-2.1/OPI/man/opiQueryDevice.Rd     |   24 +++++++-
 OPI-2.1/OPI/man/opiSetBackground.Rd   |   17 ++++++
 OPI-2.1/OPI/man/opiStaticStimulus.Rd  |   11 ++++
 27 files changed, 380 insertions(+), 135 deletions(-)

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New package FeatureHashing with initial version 0.7
Package: FeatureHashing
Type: Package
Title: Implement Feature Hashing on Model Matrix
Version: 0.7
Date: 2014-08-01
Authors@R: as.person(c( "Wush Wu [aut, cre]", "Austin Appleby (for the included Murmurhash3 sources) [ctb]"))
Author: Wush Wu [aut, cre], Austin Appleby [ctb] (for the included Murmurhash3 sources)
Maintainer: Wush Wu
Description: Feature hashing, also called as the hashing trick, is a method to transform features to vector. Without looking the indices up in an associative array, it applies a hash function to the features and uses their hash values as indices directly. This package implements the method of feature hashing proposed in Weinberger et. al. (2009) with Murmurhash3 and provides a formula interface in R. See the README.md for more information.
License: GPL (>= 3)
Depends: methods
Imports: Rcpp (>= 0.11), Matrix
LinkingTo: Rcpp
Suggests: pack
SystemRequirements: C++11
BugReports: https://github.com/wush978/FeatureHashing/issues
URL: https://github.com/rstats-db/RSQLite
Packaged: 2014-12-21 16:37:48 UTC; wush
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-21 18:00:50

More information about FeatureHashing at CRAN
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Package reports updated to version 0.1.4 with previous version 0.1.2 dated 2013-03-12

Title: Assist the Workflow of Writing Academic Articles and Other Reports
Description: Assists in writing reports and presentations by providing a frame work that brings together existing R, LaTeX/.docx and Pandoc tools. The package is designed to be used with RStudio, MiKTex/Tex Live/LibreOffice, knitr, knitcitations, Pandoc and pander. The user will want to download these free programs/packages to maximize the effectiveness of the reports package. Functions with two letter names are general text formatting functions for copying text from articles for inclusion as a citation.
Author: Tyler Rinker
Maintainer: Tyler Rinker

Diff between reports versions 0.1.2 dated 2013-03-12 and 0.1.4 dated 2014-12-21

 DESCRIPTION      |   15 +++++++--------
 MD5              |   10 +++++-----
 R/presentation.R |    7 +++++++
 README.md        |    6 +++---
 data/themes.rda  |binary
 inst/CITATION    |    4 ++--
 6 files changed, 24 insertions(+), 18 deletions(-)

More information about reports at CRAN
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New package Rdsdp with initial version 1.0.0
Package: Rdsdp
Version: 1.0.0
Title: R Interface to DSDP Semidefinite Programming Library
Author: Zhisu Zhu, Yinyu Ye (DSDP by Steve Benson, Yinyu Ye and Xiong Zhang)
Maintainer: Zhisu Zhu
Description: R interface to DSDP semidefinite programming library. Installs version 5.8 of DSDP from DSDP website. An existing installation of DSDP may be used by passing the proper configure arguments to the installation command.
LazyLoad: yes
License: GPL-3
URL: www.mcs.anl.gov/hs/software/DSDP
NeedsCompilation: yes
Packaged: 2014-12-18 20:52:32 UTC; zhisu
Repository: CRAN
Date/Publication: 2014-12-21 07:02:03

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New package rDEA with initial version 1.0-2
Package: rDEA
Version: 1.0-2
Title: Robust Data Envelopment Analysis (DEA) for R
Description: Data Envelopment Analysis for R, estimating robust DEA scores without and with environmental variables and doing returns-to-scale tests.
Authors@R: c(person("Jaak", "Simm", role = c("aut", "cre"), email = "jaak.simm@gmail.com"), person("Galina", "Besstremyannaya", role = c("aut") ))
Imports: slam (>= 0.1-9), truncreg(>= 0.2-1), truncnorm(>= 1.0-7), maxLik
Suggests: testthat
SystemRequirements: GLPK (>= 4.52)
License: GPL-2 | GPL-3
URL: https://github.com/jaak-s/rDEA
Packaged: 2014-12-20 23:31:26 UTC; jaak
Author: Jaak Simm [aut, cre], Galina Besstremyannaya [aut]
Maintainer: Jaak Simm
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-21 07:06:51

More information about rDEA at CRAN
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Package RcppMLPACK updated to version 1.0.10 with previous version 1.0.9-3 dated 2014-08-20

Title: Rcpp Integration for MLPACK Library
Description: MLPACK is an intuitive, fast, scalable C++ machine learning library, meant to be a machine learning analog to LAPACK. It aims to implement a wide array of machine learning methods and function as a Swiss army knife for machine learning researchers: MLPACK is from http://www.mlpack.org/: sources are included in the package.
Author: Qiang Kou, Ryan Curtin
Maintainer: Qiang Kou

Diff between RcppMLPACK versions 1.0.9-3 dated 2014-08-20 and 1.0.10 dated 2014-12-21

 RcppMLPACK-1.0.10/RcppMLPACK/DESCRIPTION                                                                               |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/MD5                                                                                       |  959 ++---
 RcppMLPACK-1.0.10/RcppMLPACK/R/RcppMLPACK.package.skeleton.R                                                           |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/build/vignette.rds                                                                        |binary
 RcppMLPACK-1.0.10/RcppMLPACK/inst/doc/RcppMLPACK-intro.pdf                                                             |binary
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core.hpp                                                              |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/arma_extend/arma_extend.hpp                                      |    1 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/arma_extend/typedef.hpp                                          |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/data/load.hpp                                                    |    9 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/data/load_impl.hpp                                               |  347 +-
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/data/normalize_labels.hpp                                        |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/data/normalize_labels_impl.hpp                                   |   76 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/data/save.hpp                                                    |    9 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/data/save_impl.hpp                                               |  242 -
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/dists/discrete_distribution.hpp                                  |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/dists/gaussian_distribution.hpp                                  |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/dists/laplace_distribution.hpp                                   |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/cosine_distance.hpp                                      |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/cosine_distance_impl.hpp                                 |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/epanechnikov_kernel.hpp                                  |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/epanechnikov_kernel_impl.hpp                             |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/example_kernel.hpp                                       |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/gaussian_kernel.hpp                                      |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/hyperbolic_tangent_kernel.hpp                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/kernel_traits.hpp                                        |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/laplacian_kernel.hpp                                     |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/linear_kernel.hpp                                        |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/polynomial_kernel.hpp                                    |    2 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/spherical_kernel.hpp                                     |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/kernels/triangular_kernel.hpp                                    |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/math/clamp.hpp                                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/math/lin_alg.hpp                                                 |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/math/random.hpp                                                  |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/math/range.hpp                                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/math/range_impl.hpp                                              |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/math/round.hpp                                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/metrics/ip_metric.hpp                                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/metrics/ip_metric_impl.hpp                                       |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/metrics/lmetric.hpp                                              |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/metrics/lmetric_impl.hpp                                         |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/metrics/mahalanobis_distance.hpp                                 |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/metrics/mahalanobis_distance_impl.hpp                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian.hpp                     |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian_function.hpp            |    2 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/lbfgs/lbfgs.hpp                                       |   34 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/lbfgs/test_functions.hpp                              |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/lrsdp/lrsdp.hpp                                       |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/lrsdp/lrsdp_function.hpp                              |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/sa/exponential_schedule.hpp                           |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/sa/sa.hpp                                             |   40 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/sa/sa_impl.hpp                                        |   36 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/sgd/sgd.hpp                                           |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/sgd/sgd_impl.hpp                                      |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/optimizers/sgd/test_function.hpp                                 |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/ballbound.hpp                                               |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/ballbound_impl.hpp                                          |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/binary_space_tree.hpp                                       |    2 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/binary_space_tree/dual_tree_traverser.hpp                   |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/binary_space_tree/dual_tree_traverser_impl.hpp              |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/binary_space_tree/mean_split.hpp                            |   38 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/binary_space_tree/single_tree_traverser.hpp                 |   10 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/binary_space_tree/traits.hpp                                |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/bounds.hpp                                                  |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/cosine_tree/cosine_tree.hpp                                 |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/cover_tree.hpp                                              |    2 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/statistic.hpp                                               |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/traversal_info.hpp                                          |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/tree/tree_traits.hpp                                             |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/util/arma_traits.hpp                                             |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/util/nulloutstream.hpp                                           |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/util/option.hpp                                                  |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/util/option_impl.hpp                                             |    2 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/util/sfinae_utility.hpp                                          |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/util/string_util.hpp                                             |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/util/timers.hpp                                                  |only
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/core/util/version.hpp                                                 |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/amf/amf.hpp                                                   |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/amf/amf_impl.hpp                                              |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/amf/init_rules/random_acol_init.hpp                           |   14 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/amf/update_rules/svd_complete_incremental_learning.hpp        |   26 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/cf/cf.hpp                                                     |   44 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/cf/cf_impl.hpp                                                |   50 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/decision_stump/decision_stump.hpp                             |   24 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/decision_stump/decision_stump_impl.hpp                        |   63 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/det/dt_utils.hpp                                              |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/det/dtree.hpp                                                 |   52 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/emst/dtb.hpp                                                  |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/emst/dtb_impl.hpp                                             |   53 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/emst/dtb_rules.hpp                                            |   30 
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 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/emst/dtb_stat.hpp                                             |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/emst/edge_pair.hpp                                            |   19 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/emst/union_find.hpp                                           |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/fastmks/fastmks.hpp                                           |  344 +-
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/fastmks/fastmks_impl.hpp                                      |  306 -
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/fastmks/fastmks_rules.hpp                                     |  256 -
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/fastmks/fastmks_rules_impl.hpp                                |  804 ++--
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/fastmks/fastmks_stat.hpp                                      |  206 -
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/diagonal_constraint.hpp                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/eigenvalue_ratio_constraint.hpp                           |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/em_fit.hpp                                                |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/em_fit_impl.hpp                                           |   40 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/gmm.hpp                                                   |   32 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/gmm_impl.hpp                                              |   52 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/no_constraint.hpp                                         |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/phi.hpp                                                   |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/gmm/positive_definite_constraint.hpp                          |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/hmm/hmm.hpp                                                   |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/hmm/hmm_impl.hpp                                              |   72 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/hmm/hmm_util.hpp                                              |only
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/hmm/hmm_util_impl.hpp                                         |only
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kernel_pca/kernel_pca.hpp                                     |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kernel_pca/kernel_pca_impl.hpp                                |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kernel_pca/kernel_rules/naive_method.hpp                      |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kernel_pca/kernel_rules/nystroem_method.hpp                   |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kmeans/allow_empty_clusters.hpp                               |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kmeans/kmeans.hpp                                             |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kmeans/kmeans_impl.hpp                                        |   94 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kmeans/max_variance_new_cluster.hpp                           |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kmeans/max_variance_new_cluster_impl.hpp                      |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kmeans/random_partition.hpp                                   |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kmeans/refined_start.hpp                                      |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/kmeans/refined_start_impl.hpp                                 |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/lars/lars.hpp                                                 |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/linear_regression/linear_regression.hpp                       |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/local_coordinate_coding/lcc.hpp                               |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/local_coordinate_coding/lcc_impl.hpp                          |   58 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/logistic_regression/logistic_regression.hpp                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/logistic_regression/logistic_regression_function.hpp          |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/logistic_regression/logistic_regression_impl.hpp              |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/lsh/lsh_search.hpp                                            |   50 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/lsh/lsh_search_impl.hpp                                       |  107 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/mvu/mvu.hpp                                                   |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/naive_bayes/naive_bayes_classifier.hpp                        |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/naive_bayes/naive_bayes_classifier_impl.hpp                   |   41 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nca/nca.hpp                                                   |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nca/nca_impl.hpp                                              |    7 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nca/nca_softmax_error_function.hpp                            |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nca/nca_softmax_error_function_impl.hpp                       |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/neighbor_search.hpp                           |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/neighbor_search_impl.hpp                      |   59 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/neighbor_search_rules.hpp                     |   34 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/neighbor_search_rules_impl.hpp                |  239 -
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/neighbor_search_stat.hpp                      |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/ns_traversal_info.hpp                         |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/sort_policies/furthest_neighbor_sort.hpp      |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/sort_policies/furthest_neighbor_sort_impl.hpp |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/sort_policies/nearest_neighbor_sort.hpp       |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/sort_policies/nearest_neighbor_sort_impl.hpp  |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/typedef.hpp                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/neighbor_search/unmap.hpp                                     |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nystroem_method/kmeans_selection.hpp                          |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nystroem_method/nystroem_method.hpp                           |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nystroem_method/nystroem_method_impl.hpp                      |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nystroem_method/ordered_selection.hpp                         |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/nystroem_method/random_selection.hpp                          |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/pca/pca.hpp                                                   |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/perceptron/initialization_methods/random_init.hpp             |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/perceptron/initialization_methods/zero_init.hpp               |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/perceptron/learning_policies/simple_weight_update.hpp         |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/perceptron/perceptron.hpp                                     |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/perceptron/perceptron_impl.hpp                                |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/quic_svd/quic_svd.hpp                                         |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/quic_svd/quic_svd_impl.hpp                                    |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/radical/radical.hpp                                           |   34 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/range_search/range_search.hpp                                 |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/range_search/range_search_impl.hpp                            |   45 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/range_search/range_search_rules.hpp                           |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/range_search/range_search_rules_impl.hpp                      |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/range_search/range_search_stat.hpp                            |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/rann/ra_query_stat.hpp                                        |   82 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/rann/ra_search.hpp                                            |  466 +-
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/rann/ra_search_impl.hpp                                       |  521 +--
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/rann/ra_search_rules.hpp                                      |  587 +--
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/rann/ra_search_rules_impl.hpp                                 | 1622 ++++------
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/rann/ra_typedef.hpp                                           |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/regularized_svd/regularized_svd.hpp                           |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/regularized_svd/regularized_svd_function.hpp                  |   20 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/regularized_svd/regularized_svd_impl.hpp                      |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/sparse_autoencoder/sparse_autoencoder.hpp                     |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/sparse_autoencoder/sparse_autoencoder_function.hpp            |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/sparse_autoencoder/sparse_autoencoder_impl.hpp                |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/sparse_coding/data_dependent_random_initializer.hpp           |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/sparse_coding/nothing_initializer.hpp                         |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/sparse_coding/random_initializer.hpp                          |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/sparse_coding/sparse_coding.hpp                               |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/methods/sparse_coding/sparse_coding_impl.hpp                          |   44 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/include/mlpack/prereqs.hpp                                                           |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/inst/skeleton/kmeans.cpp                                                                  |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/man/RcppMLPACK-package.Rd                                                                 |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/Makevars                                                                              |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/Makevars.win                                                                          |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/RcppMLPACK.h                                                                          |    1 
 RcppMLPACK-1.0.10/RcppMLPACK/src/kmeans.cpp                                                                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core.hpp                                                                       |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/arma_extend/arma_extend.hpp                                               |    1 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/arma_extend/typedef.hpp                                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/data/load.hpp                                                             |    9 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/data/load_impl.hpp                                                        |  347 +-
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/data/normalize_labels.hpp                                                 |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/data/normalize_labels_impl.hpp                                            |   76 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/data/save.hpp                                                             |    9 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/data/save_impl.hpp                                                        |  242 -
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/dists/discrete_distribution.cpp                                           |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/dists/discrete_distribution.hpp                                           |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/dists/gaussian_distribution.cpp                                           |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/dists/gaussian_distribution.hpp                                           |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/dists/laplace_distribution.cpp                                            |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/dists/laplace_distribution.hpp                                            |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/cosine_distance.hpp                                               |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/cosine_distance_impl.hpp                                          |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/epanechnikov_kernel.cpp                                           |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/epanechnikov_kernel.hpp                                           |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/epanechnikov_kernel_impl.hpp                                      |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/example_kernel.hpp                                                |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/gaussian_kernel.hpp                                               |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/hyperbolic_tangent_kernel.hpp                                     |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/kernel_traits.hpp                                                 |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/laplacian_kernel.hpp                                              |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/linear_kernel.hpp                                                 |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/polynomial_kernel.hpp                                             |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/pspectrum_string_kernel.cpp                                       |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/pspectrum_string_kernel.hpp                                       |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/pspectrum_string_kernel_impl.hpp                                  |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/spherical_kernel.hpp                                              |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/kernels/triangular_kernel.hpp                                             |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/math/clamp.hpp                                                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/math/lin_alg.cpp                                                          |   20 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/math/lin_alg.hpp                                                          |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/math/random.cpp                                                           |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/math/random.hpp                                                           |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/math/range.hpp                                                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/math/range_impl.hpp                                                       |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/math/round.hpp                                                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/metrics/ip_metric.hpp                                                     |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/metrics/ip_metric_impl.hpp                                                |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/metrics/lmetric.hpp                                                       |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/metrics/lmetric_impl.hpp                                                  |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/metrics/mahalanobis_distance.hpp                                          |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/metrics/mahalanobis_distance_impl.hpp                                     |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian.hpp                              |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian_function.hpp                     |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian_function_impl.hpp                |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian_impl.hpp                         |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian_test_functions.cpp               |   42 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian_test_functions.hpp               |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/lbfgs/lbfgs.hpp                                                |   34 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/lbfgs/lbfgs_impl.hpp                                           |   36 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/lbfgs/test_functions.cpp                                       |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/lbfgs/test_functions.hpp                                       |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/lrsdp/lrsdp.cpp                                                |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/lrsdp/lrsdp.hpp                                                |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/lrsdp/lrsdp_function.cpp                                       |   20 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/lrsdp/lrsdp_function.hpp                                       |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/sa/exponential_schedule.hpp                                    |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/sa/sa.hpp                                                      |   40 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/sa/sa_impl.hpp                                                 |   36 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/sgd/sgd.hpp                                                    |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/sgd/sgd_impl.hpp                                               |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/sgd/test_function.cpp                                          |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/optimizers/sgd/test_function.hpp                                          |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/ballbound.hpp                                                        |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/ballbound_impl.hpp                                                   |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree.hpp                                                |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/binary_space_tree.hpp                              |   96 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/binary_space_tree_impl.hpp                         |   99 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/dual_tree_traverser.hpp                            |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/dual_tree_traverser_impl.hpp                       |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/mean_split.hpp                                     |   38 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/mean_split_impl.hpp                                |   53 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/single_tree_traverser.hpp                          |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/single_tree_traverser_impl.hpp                     |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/binary_space_tree/traits.hpp                                         |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/bounds.hpp                                                           |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cosine_tree/cosine_tree.cpp                                          |   52 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cosine_tree/cosine_tree.hpp                                          |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree.hpp                                                       |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree/cover_tree.hpp                                            |   88 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree/cover_tree_impl.hpp                                       |  175 -
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree/dual_tree_traverser.hpp                                   |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree/dual_tree_traverser_impl.hpp                              |   17 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree/first_point_is_root.hpp                                   |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree/single_tree_traverser.hpp                                 |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree/single_tree_traverser_impl.hpp                            |   20 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/cover_tree/traits.hpp                                                |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/example_tree.hpp                                                     |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/hrectbound.hpp                                                       |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/hrectbound_impl.hpp                                                  |   50 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/mrkd_statistic.cpp                                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/mrkd_statistic.hpp                                                   |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/mrkd_statistic_impl.hpp                                              |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/rectangle_tree.hpp                                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/statistic.hpp                                                        |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/traversal_info.hpp                                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/tree/tree_traits.hpp                                                      |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/arma_traits.hpp                                                      |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/nulloutstream.hpp                                                    |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/option.cpp                                                           |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/option.hpp                                                           |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/option_impl.hpp                                                      |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/prefixedoutstream.cpp                                                |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/prefixedoutstream.hpp                                                |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/prefixedoutstream_impl.hpp                                           |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/sfinae_utility.hpp                                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/string_util.cpp                                                      |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/string_util.hpp                                                      |    4 
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 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/core/util/version.hpp                                                          |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/amf.hpp                                                            |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/amf_impl.hpp                                                       |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/init_rules/random_acol_init.hpp                                    |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/init_rules/random_init.hpp                                         |    8 
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 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/termination_policies/simple_tolerance_termination.hpp              |   28 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/termination_policies/validation_RMSE_termination.hpp               |   38 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/update_rules/nmf_als.hpp                                           |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/update_rules/nmf_mult_dist.hpp                                     |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/update_rules/nmf_mult_div.hpp                                      |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/update_rules/svd_batch_learning.hpp                                |   48 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/update_rules/svd_complete_incremental_learning.hpp                 |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/amf/update_rules/svd_incomplete_incremental_learning.hpp               |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/cf/cf.hpp                                                              |   44 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/cf/cf_impl.hpp                                                         |   50 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/decision_stump/decision_stump.hpp                                      |   24 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/decision_stump/decision_stump_impl.hpp                                 |   63 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/det/dt_utils.cpp                                                       |   57 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/det/dt_utils.hpp                                                       |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/det/dtree.cpp                                                          |   99 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/det/dtree.hpp                                                          |   52 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/emst/dtb.hpp                                                           |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/emst/dtb_impl.hpp                                                      |   53 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/emst/dtb_rules.hpp                                                     |   30 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/emst/dtb_rules_impl.hpp                                                |   36 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/emst/dtb_stat.hpp                                                      |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/emst/edge_pair.hpp                                                     |   19 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/emst/union_find.hpp                                                    |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/fastmks/fastmks.hpp                                                    |  344 +-
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 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/fastmks/fastmks_rules.hpp                                              |  256 -
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/fastmks/fastmks_rules_impl.hpp                                         |  804 ++--
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/fastmks/fastmks_stat.hpp                                               |  206 -
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/diagonal_constraint.hpp                                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/eigenvalue_ratio_constraint.hpp                                    |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/em_fit.hpp                                                         |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/em_fit_impl.hpp                                                    |   40 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/gmm.hpp                                                            |   32 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/gmm_impl.hpp                                                       |   52 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/no_constraint.hpp                                                  |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/phi.hpp                                                            |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/gmm/positive_definite_constraint.hpp                                   |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/hmm/hmm.hpp                                                            |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/hmm/hmm_impl.hpp                                                       |   72 
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 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kernel_pca/kernel_pca_impl.hpp                                         |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kernel_pca/kernel_rules/naive_method.hpp                               |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kernel_pca/kernel_rules/nystroem_method.hpp                            |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kmeans/allow_empty_clusters.hpp                                        |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kmeans/kmeans.hpp                                                      |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kmeans/kmeans_impl.hpp                                                 |   94 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kmeans/max_variance_new_cluster.hpp                                    |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kmeans/max_variance_new_cluster_impl.hpp                               |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kmeans/random_partition.hpp                                            |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kmeans/refined_start.hpp                                               |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/kmeans/refined_start_impl.hpp                                          |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/lars/lars.cpp                                                          |   46 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/lars/lars.hpp                                                          |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/linear_regression/linear_regression.cpp                                |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/linear_regression/linear_regression.hpp                                |    4 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/local_coordinate_coding/lcc.hpp                                        |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/local_coordinate_coding/lcc_impl.hpp                                   |   58 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/logistic_regression/logistic_regression.hpp                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/logistic_regression/logistic_regression_function.cpp                   |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/logistic_regression/logistic_regression_function.hpp                   |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/logistic_regression/logistic_regression_impl.hpp                       |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/lsh/lsh_search.hpp                                                     |   50 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/lsh/lsh_search_impl.hpp                                                |  107 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/mvu/mvu.cpp                                                            |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/mvu/mvu.hpp                                                            |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/naive_bayes/naive_bayes_classifier.hpp                                 |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/naive_bayes/naive_bayes_classifier_impl.hpp                            |   41 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/nca/nca.hpp                                                            |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/nca/nca_impl.hpp                                                       |    7 
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 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/neighbor_search_rules.hpp                              |   34 
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 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/ns_traversal_info.hpp                                  |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/sort_policies/furthest_neighbor_sort.cpp               |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/sort_policies/furthest_neighbor_sort.hpp               |   10 
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 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/sort_policies/nearest_neighbor_sort.cpp                |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/sort_policies/nearest_neighbor_sort.hpp                |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/sort_policies/nearest_neighbor_sort_impl.hpp           |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/typedef.hpp                                            |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/unmap.cpp                                              |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/neighbor_search/unmap.hpp                                              |   16 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/nystroem_method/kmeans_selection.hpp                                   |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/nystroem_method/nystroem_method.hpp                                    |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/nystroem_method/nystroem_method_impl.hpp                               |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/nystroem_method/ordered_selection.hpp                                  |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/nystroem_method/random_selection.hpp                                   |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/pca/pca.cpp                                                            |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/pca/pca.hpp                                                            |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/perceptron/initialization_methods/random_init.hpp                      |   10 
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 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/perceptron/perceptron.hpp                                              |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/perceptron/perceptron_impl.hpp                                         |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/quic_svd/quic_svd.hpp                                                  |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/quic_svd/quic_svd_impl.hpp                                             |    2 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/radical/radical.cpp                                                    |   42 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/radical/radical.hpp                                                    |   34 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/range_search/range_search.hpp                                          |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/range_search/range_search_impl.hpp                                     |   45 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/range_search/range_search_rules.hpp                                    |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/range_search/range_search_rules_impl.hpp                               |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/range_search/range_search_stat.hpp                                     |    6 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/rann/ra_query_stat.hpp                                                 |   82 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/rann/ra_search.hpp                                                     |  466 +-
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/rann/ra_search_impl.hpp                                                |  521 +--
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/rann/ra_search_rules.hpp                                               |  587 +--
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/rann/ra_search_rules_impl.hpp                                          | 1622 ++++------
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/rann/ra_typedef.hpp                                                    |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/regularized_svd/regularized_svd.hpp                                    |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/regularized_svd/regularized_svd_function.cpp                           |   36 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/regularized_svd/regularized_svd_function.hpp                           |   20 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/regularized_svd/regularized_svd_impl.hpp                               |   14 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_autoencoder/sparse_autoencoder.hpp                              |   26 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_autoencoder/sparse_autoencoder_function.cpp                     |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_autoencoder/sparse_autoencoder_function.hpp                     |   18 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_autoencoder/sparse_autoencoder_impl.hpp                         |   22 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_coding/data_dependent_random_initializer.hpp                    |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_coding/nothing_initializer.hpp                                  |    8 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_coding/random_initializer.hpp                                   |   10 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_coding/sparse_coding.hpp                                        |   12 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/methods/sparse_coding/sparse_coding_impl.hpp                                   |   44 
 RcppMLPACK-1.0.10/RcppMLPACK/src/mlpack/prereqs.hpp                                                                    |    2 
 RcppMLPACK-1.0.9-3/RcppMLPACK/README.md                                                                                |only
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Package qmrparser updated to version 0.1.5 with previous version 0.1.4 dated 2013-12-12

Title: Parser combinator in R
Description: Basic functions for building parsers, with an application to PC-AXIS format files.
Author: Juan Gea Rosat, Ramon MartĂ­nez CoscollĂ  .
Maintainer: Juan Gea

Diff between qmrparser versions 0.1.4 dated 2013-12-12 and 0.1.5 dated 2014-12-21

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 MD5                             |   19 +++++++++---------
 NEWS                            |only
 R/commentParser.R               |    7 ++++--
 build/vignette.rds              |binary
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 inst/noweb/README               |    2 -
 inst/noweb/qmrparser.nw         |   41 +++++++++++++++++++++++++++++++++++-----
 man/qmrparser-package.Rd        |    4 +--
 tests/runit/runit.01tokens.R    |    8 +++++++
 11 files changed, 66 insertions(+), 23 deletions(-)

More information about qmrparser at CRAN
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Package powerGWASinteraction updated to version 1.1.1 with previous version 1.1.0 dated 2014-09-05

Title: Power Calculations for GxE and GxG Interactions for GWAS
Description: Analytical power calculations for GxE and GxG interactions for case-control studies of candidate genes and genome-wide association studies (GWAS). This includes power calculation for four two-step screening and testing procedures. It can also calculate power for GxE and GxG without any screening.
Author: Charles Kooperberg and Li Hsu
Maintainer: Charles Kooperberg

Diff between powerGWASinteraction versions 1.1.0 dated 2014-09-05 and 1.1.1 dated 2014-12-21

 DESCRIPTION              |   12 ++++++------
 MD5                      |    6 +++---
 R/powerGWASinteraction.R |    6 ++++--
 man/powerGG.Rd           |    2 +-
 4 files changed, 14 insertions(+), 12 deletions(-)

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Package hypred updated to version 0.5 with previous version 0.4 dated 2013-11-20

Title: Simulation of Genomic Data in Applied Genetics
Description: The package is intended for simulating high density genomic data. The meiosis is simulated under a count-location model, the genetic structure can include additive and dominance effects. The low level nature of the package provides great flexibility in creating all kinds of populations.
Author: Frank Technow
Maintainer: Frank Technow

Diff between hypred versions 0.4 dated 2013-11-20 and 0.5 dated 2014-12-21

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 inst/doc/hypred.pdf   |binary
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 6 files changed, 19 insertions(+), 24 deletions(-)

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New package htmlTable with initial version 1.0
Package: htmlTable
Version: 1.0
Date: 2014-12-19
Title: Advanced Tables for Markdown/HTML
Author: Max Gordon
Maintainer: Max Gordon
Description: A package for creating tables with state of the art layout containing row spanners, column spanners, table spanners, zebra striping, and more. While allowing advanced layout the underlying CSS structure is simple in order to maximize compatibility with MS Word/LibreOffice. The package also contains a few text formatting functions that help outputting text compatible with HTML/LaTeX.
License: GPL (>= 3)
URL: http://gforge.se/packages/
BugReports: https://github.com/gforge/htmlTable/issues
Biarch: yes
Imports: stringr, magrittr, Hmisc, methods
Suggests: testthat, XML, knitr, xtable, reshape
Encoding: UTF-8
NeedsCompilation: no
VignetteBuilder: knitr
Packaged: 2014-12-20 16:22:58 UTC; Max
Repository: CRAN
Date/Publication: 2014-12-21 07:02:08

More information about htmlTable at CRAN
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Package breakpoint updated to version 1.1 with previous version 1.0 dated 2014-01-17

Title: Multiple Break-Point Detection via the Cross-Entropy Method
Description: Implements the cross-entropy (CE) method, which is a model based stochastic optimization technique to estimate both the number and their corresponding locations of break-points in biological sequences of continuous and discrete measurements as described in Priyadarshana and Sofronov (2014, 2012a, 2012b).
Author: Priyadarshana W.J.R.M. and Georgy Sofronov
Maintainer: Priyadarshana W.J.R.M.

Diff between breakpoint versions 1.0 dated 2014-01-17 and 1.1 dated 2014-12-21

 breakpoint-1.0/breakpoint/R/CE.R                    |only
 breakpoint-1.0/breakpoint/R/ce.beta.R               |only
 breakpoint-1.0/breakpoint/R/create.folder.R         |only
 breakpoint-1.0/breakpoint/R/fun_alpha.R             |only
 breakpoint-1.0/breakpoint/R/fun_beta.R              |only
 breakpoint-1.0/breakpoint/R/modi.BICnorm.new.R      |only
 breakpoint-1.0/breakpoint/data/data.rda             |only
 breakpoint-1.0/breakpoint/man/CE.Rd                 |only
 breakpoint-1.0/breakpoint/man/data.Rd               |only
 breakpoint-1.1/breakpoint/DESCRIPTION               |   18 ++++----
 breakpoint-1.1/breakpoint/MD5                       |   45 +++++++++++++-------
 breakpoint-1.1/breakpoint/NAMESPACE                 |    4 -
 breakpoint-1.1/breakpoint/R/BICnb.R                 |only
 breakpoint-1.1/breakpoint/R/BICzinb.R               |only
 breakpoint-1.1/breakpoint/R/CE.NB.R                 |only
 breakpoint-1.1/breakpoint/R/CE.Normal.R             |only
 breakpoint-1.1/breakpoint/R/CE.ZINB.R               |only
 breakpoint-1.1/breakpoint/R/betarand.R              |   12 ++---
 breakpoint-1.1/breakpoint/R/ce.4betaNB.R            |only
 breakpoint-1.1/breakpoint/R/ce.4betaZINB.R          |only
 breakpoint-1.1/breakpoint/R/ce.sim4beta.R           |only
 breakpoint-1.1/breakpoint/R/ce.simNormalNB.R        |only
 breakpoint-1.1/breakpoint/R/ce.simNormalZINB.R      |only
 breakpoint-1.1/breakpoint/R/ce.simnormal.R          |only
 breakpoint-1.1/breakpoint/R/fun.alpha.R             |only
 breakpoint-1.1/breakpoint/R/fun.beta.R              |only
 breakpoint-1.1/breakpoint/R/llhoodnb.R              |only
 breakpoint-1.1/breakpoint/R/llhoodzinb.R            |only
 breakpoint-1.1/breakpoint/R/logliknb.R              |only
 breakpoint-1.1/breakpoint/R/loglikzinb.R            |only
 breakpoint-1.1/breakpoint/R/mBIC.R                  |only
 breakpoint-1.1/breakpoint/R/normrand.R              |only
 breakpoint-1.1/breakpoint/R/plott.R                 |    8 +--
 breakpoint-1.1/breakpoint/R/profilePlot.R           |only
 breakpoint-1.1/breakpoint/data/ch1.GM03563.rda      |only
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 breakpoint-1.1/breakpoint/man/breakpoint-package.Rd |   34 ++++++++-------
 breakpoint-1.1/breakpoint/man/ch1.GM03563.Rd        |only
 breakpoint-1.1/breakpoint/man/profilePlot.Rd        |only
 41 files changed, 71 insertions(+), 50 deletions(-)

More information about breakpoint at CRAN
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Package berryFunctions updated to version 1.7.1 with previous version 1.6 dated 2014-10-14

Title: Function Collection related to Plotting and Hydrology
Description: miscellaneous functions to: draw horizontal histograms, color scatterpoints by 3rd dimension, enhance log-axis plots, zoom in X11 graphics, use the unit hydrograph in a linear storage cascade, convert lists to data.frames, fit multiple functions by regression (power, reciprocal, exponential, logarithmic, polynomial, rational). Development version: https://github.com/BerryBoessenkool
Author: Berry Boessenkool
Maintainer: Berry Boessenkool

Diff between berryFunctions versions 1.6 dated 2014-10-14 and 1.7.1 dated 2014-12-21

 berryFunctions-1.6/berryFunctions/inst/extdata/Versuch1.txt               |only
 berryFunctions-1.6/berryFunctions/inst/extdata/Versuch2.txt               |only
 berryFunctions-1.7.1/berryFunctions/ChangeLog                             |   54 +-
 berryFunctions-1.7.1/berryFunctions/DESCRIPTION                           |   12 
 berryFunctions-1.7.1/berryFunctions/MD5                                   |  111 ++--
 berryFunctions-1.7.1/berryFunctions/R/betaPlot.R                          |   83 +--
 berryFunctions-1.7.1/berryFunctions/R/circle.R                            |   29 -
 berryFunctions-1.7.1/berryFunctions/R/classify.R                          |   57 +-
 berryFunctions-1.7.1/berryFunctions/R/climateGraph.r                      |    6 
 berryFunctions-1.7.1/berryFunctions/R/colPoints.R                         |  177 ++++---
 berryFunctions-1.7.1/berryFunctions/R/colPointsLegend.R                   |   38 +
 berryFunctions-1.7.1/berryFunctions/R/combineFiles.r                      |   28 -
 berryFunctions-1.7.1/berryFunctions/R/createDoc.r                         |   41 +
 berryFunctions-1.7.1/berryFunctions/R/dupes.R                             |only
 berryFunctions-1.7.1/berryFunctions/R/expReg.R                            |only
 berryFunctions-1.7.1/berryFunctions/R/funTinn.R                           |    2 
 berryFunctions-1.7.1/berryFunctions/R/funnelPlot.r                        |  176 +++----
 berryFunctions-1.7.1/berryFunctions/R/linLogTrans.R                       |  242 +++++-----
 berryFunctions-1.7.1/berryFunctions/R/linReg.R                            |   24 
 berryFunctions-1.7.1/berryFunctions/R/logAxis.R                           |   63 +-
 berryFunctions-1.7.1/berryFunctions/R/logSpaced.R                         |only
 berryFunctions-1.7.1/berryFunctions/R/logVals.R                           |   32 +
 berryFunctions-1.7.1/berryFunctions/R/mReg.r                              |    3 
 berryFunctions-1.7.1/berryFunctions/R/nameSample.R                        |   82 ++-
 berryFunctions-1.7.1/berryFunctions/R/normPlot.R                          |   89 +--
 berryFunctions-1.7.1/berryFunctions/R/owa.r                               |   18 
 berryFunctions-1.7.1/berryFunctions/R/pointZoom.R                         |    4 
 berryFunctions-1.7.1/berryFunctions/R/randomPoints.R                      |    3 
 berryFunctions-1.7.1/berryFunctions/R/removeSpace.R                       |only
 berryFunctions-1.7.1/berryFunctions/R/rmse.r                              |    5 
 berryFunctions-1.7.1/berryFunctions/R/rsquare.r                           |    5 
 berryFunctions-1.7.1/berryFunctions/R/smallPlot.R                         |    5 
 berryFunctions-1.7.1/berryFunctions/R/tableColVal.r                       |  114 ++--
 berryFunctions-1.7.1/berryFunctions/R/textField.R                         |   32 +
 berryFunctions-1.7.1/berryFunctions/R/yearSample.R                        |   48 -
 berryFunctions-1.7.1/berryFunctions/inst/extdata/calctime_nameSample.txt  |only
 berryFunctions-1.7.1/berryFunctions/inst/extdata/calctime_nameSample2.txt |only
 berryFunctions-1.7.1/berryFunctions/inst/extdata/doublelines.txt          |only
 berryFunctions-1.7.1/berryFunctions/inst/extdata/dupes.ods                |only
 berryFunctions-1.7.1/berryFunctions/inst/extdata/rivers.txt               |only
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 berryFunctions-1.7.1/berryFunctions/inst/extdata/versuch2.txt             |only
 berryFunctions-1.7.1/berryFunctions/man/betaPlot.Rd                       |    3 
 berryFunctions-1.7.1/berryFunctions/man/circle.Rd                         |   24 
 berryFunctions-1.7.1/berryFunctions/man/classify.Rd                       |   90 ++-
 berryFunctions-1.7.1/berryFunctions/man/colPoints.Rd                      |   59 +-
 berryFunctions-1.7.1/berryFunctions/man/colPointsLegend.Rd                |   12 
 berryFunctions-1.7.1/berryFunctions/man/combineFiles.Rd                   |   65 +-
 berryFunctions-1.7.1/berryFunctions/man/compareFiles.Rd                   |   44 -
 berryFunctions-1.7.1/berryFunctions/man/createDoc.Rd                      |   10 
 berryFunctions-1.7.1/berryFunctions/man/dupes.Rd                          |only
 berryFunctions-1.7.1/berryFunctions/man/expReg.Rd                         |only
 berryFunctions-1.7.1/berryFunctions/man/linReg.Rd                         |   23 
 berryFunctions-1.7.1/berryFunctions/man/logAxis.Rd                        |   42 +
 berryFunctions-1.7.1/berryFunctions/man/logSpaced.Rd                      |only
 berryFunctions-1.7.1/berryFunctions/man/logVals.Rd                        |   10 
 berryFunctions-1.7.1/berryFunctions/man/nameSample.Rd                     |   72 +-
 berryFunctions-1.7.1/berryFunctions/man/normPlot.Rd                       |   66 +-
 berryFunctions-1.7.1/berryFunctions/man/owa.Rd                            |   40 -
 berryFunctions-1.7.1/berryFunctions/man/removeSpace.Rd                    |only
 berryFunctions-1.7.1/berryFunctions/man/rmse.Rd                           |    3 
 berryFunctions-1.7.1/berryFunctions/man/rsquare.Rd                        |    3 
 berryFunctions-1.7.1/berryFunctions/man/tableColVal.Rd                    |    6 
 berryFunctions-1.7.1/berryFunctions/man/textField.Rd                      |   83 +--
 berryFunctions-1.7.1/berryFunctions/man/unitHydrograph.Rd                 |    7 
 65 files changed, 1317 insertions(+), 928 deletions(-)

More information about berryFunctions at CRAN
Permanent link

New package aplore3 with initial version 0.7
Package: aplore3
Title: Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd ed.)
Version: 0.7
Authors@R: "Luca Braglia [aut, cre]"
Description: This package is a unofficial companion to the textbook "Applied Logistic Regression" by D.W. Hosmer, S. Lemeshow and R.X. Sturdivant (3rd ed.). See ?aplore3 for more info.
URL: https://github.com/lbraglia/aplore3
BugReports: https://github.com/lbraglia/aplore3/issues
Depends: R (>= 3.1.1)
License: GPL-3
LazyData: true
VignetteBuilder: knitr
Suggests: knitr, MASS, vcdExtra, nnet, survival, pROC
Packaged: 2014-12-20 22:27:04 UTC; l
Author: "Luca Braglia" [aut, cre]
Maintainer: "Luca Braglia"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-21 07:02:05

More information about aplore3 at CRAN
Permanent link


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