Title: Safely access the RStudio API.
Diff between rstudioapi versions 0.1 dated 2014-03-27 and 0.2 dated 2014-12-30
Description: This package provides functions to make it easy to access
the RStudio API when available, and provide informative error messages
when not.
Author: Hadley Wickham [aut],
JJ Allaire [aut, cre],
RStudio [cph]
Maintainer: JJ Allaire
DESCRIPTION | 18 +++++++++-----
MD5 | 21 ++++++++++------
NAMESPACE | 5 +++
NEWS |only
R/code.R | 68 ++++++++++++++++++++++++++++++++++-------------------
R/stubs.R |only
README.md | 2 -
man/callFun.Rd | 15 +++++------
man/getVersion.Rd | 11 ++++----
man/hasFun.Rd | 23 ++++++++---------
man/isAvailable.Rd | 10 +++----
man/previewRd.Rd |only
man/versionInfo.Rd |only
man/viewer.Rd |only
14 files changed, 103 insertions(+), 70 deletions(-)
Title: Graphical tools for analyzing Markov Chain Monte Carlo
simulations from Bayesian inference.
Diff between ggmcmc versions 0.5.1 dated 2013-10-03 and 0.6 dated 2014-12-30
Description: ggmcmc is a tool for assessing and diagnosing convergence of
Markov Chain Monte Carlo simulations, as well as for graphically display
results from full MCMC analysis. The package also facilitates the graphical
interpretation of models by providing flexible functions to plot the
results against observed variables.
Author: Xavier Fernández i Marín
Maintainer: Xavier Fernández i Marín
ggmcmc-0.5.1/ggmcmc/data/samples.rda |only
ggmcmc-0.5.1/ggmcmc/man/S.Rd |only
ggmcmc-0.5.1/ggmcmc/man/calc.bin.Rd |only
ggmcmc-0.5.1/ggmcmc/man/gl.unq.Rd |only
ggmcmc-0.5.1/ggmcmc/man/roc.calc.Rd |only
ggmcmc-0.6/ggmcmc/DESCRIPTION | 10 +-
ggmcmc-0.6/ggmcmc/MD5 | 104 ++++++++++++++------------
ggmcmc-0.6/ggmcmc/NAMESPACE | 13 ++-
ggmcmc-0.6/ggmcmc/NEWS | 57 ++++++++++++++
ggmcmc-0.6/ggmcmc/R/data.R | 63 ++++++++++++++-
ggmcmc-0.6/ggmcmc/R/functions.R | 67 +++++++++++++---
ggmcmc-0.6/ggmcmc/R/ggmcmc.R | 58 +++++++++++---
ggmcmc-0.6/ggmcmc/R/ggs.R | 73 +++++++++++-------
ggmcmc-0.6/ggmcmc/R/ggs_Rhat.R | 63 +++++++--------
ggmcmc-0.6/ggmcmc/R/ggs_autocorrelation.R | 16 ++--
ggmcmc-0.6/ggmcmc/R/ggs_caterpillar.R | 50 ++++--------
ggmcmc-0.6/ggmcmc/R/ggs_compare_partial.R | 11 +-
ggmcmc-0.6/ggmcmc/R/ggs_crosscorrelation.R | 17 ++--
ggmcmc-0.6/ggmcmc/R/ggs_density.R | 4 -
ggmcmc-0.6/ggmcmc/R/ggs_geweke.R | 50 ++++++++----
ggmcmc-0.6/ggmcmc/R/ggs_histogram.R | 16 ++--
ggmcmc-0.6/ggmcmc/R/ggs_ppmean.R | 15 +--
ggmcmc-0.6/ggmcmc/R/ggs_ppsd.R | 17 ++--
ggmcmc-0.6/ggmcmc/R/ggs_rocplot.R | 25 +++---
ggmcmc-0.6/ggmcmc/R/ggs_running.R | 26 +++---
ggmcmc-0.6/ggmcmc/R/ggs_separation.R | 28 +++----
ggmcmc-0.6/ggmcmc/R/ggs_traceplot.R | 22 ++++-
ggmcmc-0.6/ggmcmc/R/globals.R | 12 +--
ggmcmc-0.6/ggmcmc/R/help.R | 2
ggmcmc-0.6/ggmcmc/data/binary.rda |only
ggmcmc-0.6/ggmcmc/data/linear.rda |only
ggmcmc-0.6/ggmcmc/data/radon.rda |only
ggmcmc-0.6/ggmcmc/man/ac.Rd | 17 ++--
ggmcmc-0.6/ggmcmc/man/calc_bin.Rd |only
ggmcmc-0.6/ggmcmc/man/ci.Rd |only
ggmcmc-0.6/ggmcmc/man/get_family.Rd | 24 +-----
ggmcmc-0.6/ggmcmc/man/ggmcmc.Rd | 81 +++++++-------------
ggmcmc-0.6/ggmcmc/man/ggs.Rd | 93 +++++------------------
ggmcmc-0.6/ggmcmc/man/ggs_Rhat.Rd | 30 ++-----
ggmcmc-0.6/ggmcmc/man/ggs_autocorrelation.Rd | 24 ++----
ggmcmc-0.6/ggmcmc/man/ggs_caterpillar.Rd | 74 ++++++------------
ggmcmc-0.6/ggmcmc/man/ggs_chain.Rd | 11 +-
ggmcmc-0.6/ggmcmc/man/ggs_compare_partial.Rd | 31 ++-----
ggmcmc-0.6/ggmcmc/man/ggs_crosscorrelation.Rd | 28 ++-----
ggmcmc-0.6/ggmcmc/man/ggs_density.Rd | 28 ++-----
ggmcmc-0.6/ggmcmc/man/ggs_geweke.Rd | 32 +++-----
ggmcmc-0.6/ggmcmc/man/ggs_histogram.Rd | 26 ++----
ggmcmc-0.6/ggmcmc/man/ggs_ppmean.Rd | 38 +++------
ggmcmc-0.6/ggmcmc/man/ggs_ppsd.Rd | 38 +++------
ggmcmc-0.6/ggmcmc/man/ggs_rocplot.Rd | 29 ++-----
ggmcmc-0.6/ggmcmc/man/ggs_running.Rd | 29 ++-----
ggmcmc-0.6/ggmcmc/man/ggs_separation.Rd | 36 +++------
ggmcmc-0.6/ggmcmc/man/ggs_traceplot.Rd | 32 +++-----
ggmcmc-0.6/ggmcmc/man/gl_unq.Rd |only
ggmcmc-0.6/ggmcmc/man/radon.Rd |only
ggmcmc-0.6/ggmcmc/man/roc_calc.Rd |only
ggmcmc-0.6/ggmcmc/man/s.Rd |only
ggmcmc-0.6/ggmcmc/man/s.binary.Rd |only
ggmcmc-0.6/ggmcmc/man/s.y.rep.Rd |only
ggmcmc-0.6/ggmcmc/man/sde0f.Rd | 17 ++--
ggmcmc-0.6/ggmcmc/man/y.Rd |only
ggmcmc-0.6/ggmcmc/man/y.binary.Rd |only
62 files changed, 777 insertions(+), 760 deletions(-)
Title: Graphical user interface for data mining in R
Diff between rattle versions 3.3.0 dated 2014-09-07 and 3.4.1 dated 2014-12-30
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data mining.
The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file
(or via ODBC), transform and explore the data,
build and evaluate models, and export models as PMML (predictive
modelling markup language) or as scores. All of this with knowing little
about R. All R commands are logged and commented through the log tab. Thus they
are available to the user as a script file or as an aide for the user to
learn R or to copy-and-paste directly into R itself.
Rattle also exports a number of utility
functions and the graphical user interface, invoked as rattle(), does
not need to be run to deploy these.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] (OOB AUC for Random Forest),
Brian Ripley [cph] (Author of original print.summary.nnet)
Maintainer: Graham Williams
DESCRIPTION | 16 ++++++++--------
MD5 | 36 ++++++++++++++++++------------------
R/evaluate.R | 11 ++++++++---
R/explore.R | 43 +++++++++++++++++++++++--------------------
R/fancyRpartPlot.R | 11 ++++++++++-
R/help.R | 24 ++++++++++++------------
R/normVarNames.R | 8 ++++----
R/rattle.R | 4 ++--
R/rattleInfo.R | 43 ++-----------------------------------------
build/vignette.rds |binary
data/locationsAUS.RData |binary
data/weather.RData |binary
data/weatherAUS.RData |binary
inst/NEWS | 20 ++++++++++++++++++++
inst/doc/rattle.pdf |binary
inst/etc/rattle.ui | 34 ++++------------------------------
inst/etc/textviews.xml | 21 +++++++--------------
inst/etc/tooltips.xml | 4 ----
man/internal.Rd | 1 -
19 files changed, 118 insertions(+), 158 deletions(-)
Title: Business Cycle Dating and Plotting Tools
Diff between BCDating versions 0.9.3 dated 2013-09-03 and 0.9.7 dated 2014-12-30
Description: Tools for Dating Business Cycles using Harding-Pagan (Quarterly Bry-Boschan) method and various plotting features.
Author: Majid Einian [aut, cre]
Maintainer: Majid Einian
DESCRIPTION | 16 +-
MD5 | 28 ++--
NAMESPACE | 1
R/BCDating.R | 191 +++++++++++++++++++++--------
data/Iran.non.Oil.GDP.Cycle.rda |binary
data/Iran.non.Oil.GDP.Quarterly.Growth.rda |binary
data/MBRI.Iran.Dating.rda |binary
man/BBQ.Rd | 2
man/BCDating-class.Rd | 2
man/BCDating-package.Rd | 14 --
man/avgts.Rd | 2
man/plot-methods.Rd | 2
man/show-methods.Rd | 2
man/summary-methods.Rd | 2
man/window-methods.Rd | 2
15 files changed, 172 insertions(+), 92 deletions(-)
Title: Parallel implementation of the "segment" function of package
"DNAcopy"
Diff between ParDNAcopy versions 1.3 dated 2013-06-27 and 2.0 dated 2014-12-30
Description: Parallelized version of the "segment" function from Bioconductor package "DNAcopy", utilizing multi-core computation on host CPU
Author: Alex Krasnitz, Guoli Sun
Maintainer: Guoli Sun
ParDNAcopy-1.3/ParDNAcopy/spares |only
ParDNAcopy-2.0/ParDNAcopy/DESCRIPTION | 18 ++++++++----------
ParDNAcopy-2.0/ParDNAcopy/MD5 | 6 ++----
ParDNAcopy-2.0/ParDNAcopy/R/parSegment.R | 2 +-
4 files changed, 11 insertions(+), 15 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.6.0 dated 2014-04-25 and 1.6.1 dated 2014-12-30
Description: This package contains functions for performing tree-ring
analyses such as detrending, chronology building, and cross dating.
The package reads and writes standard file formats used in
dendrochronology
Author: Andy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre Mérian [aut, cph], Fares Qeadan [aut, cph], Christian Zang [aut, cph], Allan Buras [ctb], Jacob Cecile [ctb], Manfred Mudelsee [ctb], Michael Schulz [ctb]
Maintainer: Andy Bunn
dplR-1.6.0/dplR/inst/doc/intro-dplR.Rnw |only
dplR-1.6.0/dplR/inst/doc/timeseries-dplR.Rnw |only
dplR-1.6.0/dplR/inst/doc/xdate-dplR.Rnw |only
dplR-1.6.1/dplR/ChangeLog | 209 ++++++++++-
dplR-1.6.1/dplR/DESCRIPTION | 31 -
dplR-1.6.1/dplR/MD5 | 175 +++++----
dplR-1.6.1/dplR/NAMESPACE | 12
dplR-1.6.1/dplR/R/chron.R | 4
dplR-1.6.1/dplR/R/common.interval.R | 24 -
dplR-1.6.1/dplR/R/corr.rwl.seg.R | 66 +--
dplR-1.6.1/dplR/R/corr.series.seg.R | 8
dplR-1.6.1/dplR/R/crn.plot.R | 19 -
dplR-1.6.1/dplR/R/detrend.R | 4
dplR-1.6.1/dplR/R/glk.R | 12
dplR-1.6.1/dplR/R/helpers.R | 4
dplR-1.6.1/dplR/R/interseries.cor.R | 4
dplR-1.6.1/dplR/R/latexify.R |only
dplR-1.6.1/dplR/R/morlet.R | 11
dplR-1.6.1/dplR/R/powt.R | 1
dplR-1.6.1/dplR/R/rasterPlot.R |only
dplR-1.6.1/dplR/R/redfit.R | 2
dplR-1.6.1/dplR/R/rwi.stats.running.R | 6
dplR-1.6.1/dplR/R/series.rwl.plot.R | 1
dplR-1.6.1/dplR/R/skel.plot.R | 232 ++++++------
dplR-1.6.1/dplR/R/spag.plot.R | 20 -
dplR-1.6.1/dplR/R/wavelet.plot.R | 273 +++++++--------
dplR-1.6.1/dplR/R/xskel.ccf.plot.R | 418 ++++++++++-------------
dplR-1.6.1/dplR/R/xskel.plot.R | 198 +++++-----
dplR-1.6.1/dplR/TODO | 8
dplR-1.6.1/dplR/build/vignette.rds |binary
dplR-1.6.1/dplR/data/anos1.rda |binary
dplR-1.6.1/dplR/data/ca533.rda |binary
dplR-1.6.1/dplR/data/cana157.rda |binary
dplR-1.6.1/dplR/data/co021.rda |binary
dplR-1.6.1/dplR/data/gp.rwl.rda |binary
dplR-1.6.1/dplR/inst/doc/00_INDEX |only
dplR-1.6.1/dplR/inst/doc/build-math-dplR.R |only
dplR-1.6.1/dplR/inst/doc/intro-dplR.R | 36 +
dplR-1.6.1/dplR/inst/doc/intro-dplR.pdf |binary
dplR-1.6.1/dplR/inst/doc/math-dplR.R |only
dplR-1.6.1/dplR/inst/doc/math-dplR.Rnw.txt |only
dplR-1.6.1/dplR/inst/doc/math-dplR.bib |only
dplR-1.6.1/dplR/inst/doc/math-dplR.pdf |only
dplR-1.6.1/dplR/inst/doc/timeseries-dplR.R | 34 +
dplR-1.6.1/dplR/inst/doc/timeseries-dplR.pdf |binary
dplR-1.6.1/dplR/inst/doc/xdate-dplR.R | 26 -
dplR-1.6.1/dplR/inst/doc/xdate-dplR.pdf |binary
dplR-1.6.1/dplR/inst/po/fi/LC_MESSAGES/R-dplR.mo |binary
dplR-1.6.1/dplR/inst/po/fi/LC_MESSAGES/dplR.mo |binary
dplR-1.6.1/dplR/inst/unitTests/runit.dplR.R | 147 +++++---
dplR-1.6.1/dplR/inst/unitTests/runit.utils.R |only
dplR-1.6.1/dplR/man/ccf.series.rwl.Rd | 7
dplR-1.6.1/dplR/man/chron.Rd | 7
dplR-1.6.1/dplR/man/combine.rwl.Rd | 5
dplR-1.6.1/dplR/man/corr.rwl.seg.Rd | 13
dplR-1.6.1/dplR/man/corr.series.seg.Rd | 12
dplR-1.6.1/dplR/man/crn.plot.Rd | 22 -
dplR-1.6.1/dplR/man/detrend.Rd | 2
dplR-1.6.1/dplR/man/dplR-package.Rd | 2
dplR-1.6.1/dplR/man/ffcsaps.Rd | 11
dplR-1.6.1/dplR/man/gini.coef.Rd | 13
dplR-1.6.1/dplR/man/glk.Rd | 9
dplR-1.6.1/dplR/man/interseries.cor.Rd | 18
dplR-1.6.1/dplR/man/latexDate.Rd |only
dplR-1.6.1/dplR/man/latexify.Rd |only
dplR-1.6.1/dplR/man/plot.rwl.Rd | 6
dplR-1.6.1/dplR/man/pointer.Rd | 10
dplR-1.6.1/dplR/man/powt.Rd | 2
dplR-1.6.1/dplR/man/print.redfit.Rd | 4
dplR-1.6.1/dplR/man/rasterPlot.Rd |only
dplR-1.6.1/dplR/man/read.tridas.Rd | 78 ++--
dplR-1.6.1/dplR/man/redfit.Rd | 18
dplR-1.6.1/dplR/man/rwi.stats.running.Rd | 37 +-
dplR-1.6.1/dplR/man/rwl.stats.Rd | 9
dplR-1.6.1/dplR/man/sea.Rd | 2
dplR-1.6.1/dplR/man/sens1.Rd | 9
dplR-1.6.1/dplR/man/sens2.Rd | 9
dplR-1.6.1/dplR/man/spag.plot.Rd | 10
dplR-1.6.1/dplR/man/strip.rwl.Rd | 7
dplR-1.6.1/dplR/man/wavelet.plot.Rd | 37 +-
dplR-1.6.1/dplR/man/write.tridas.Rd | 44 +-
dplR-1.6.1/dplR/man/xskel.ccf.plot.Rd | 11
dplR-1.6.1/dplR/man/xskel.plot.Rd | 9
dplR-1.6.1/dplR/po/R-dplR.pot | 347 ++++++++++++++++++-
dplR-1.6.1/dplR/po/R-fi.po | 361 ++++++++++++++++++-
dplR-1.6.1/dplR/po/dplR.pot | 138 +++++--
dplR-1.6.1/dplR/po/fi.po | 137 +++++--
dplR-1.6.1/dplR/src/dplR.h | 16
dplR-1.6.1/dplR/src/exactsum.h | 63 ---
dplR-1.6.1/dplR/src/rcompact.c | 42 +-
dplR-1.6.1/dplR/src/readloop.c | 2
dplR-1.6.1/dplR/src/redfit.c | 24 -
dplR-1.6.1/dplR/vignettes/dplR.sty | 4
dplR-1.6.1/dplR/vignettes/intro-dplR.Rnw | 13
dplR-1.6.1/dplR/vignettes/timeseries-dplR.Rnw | 20 -
dplR-1.6.1/dplR/vignettes/xdate-dplR.Rnw | 9
96 files changed, 2324 insertions(+), 1260 deletions(-)