Title: Quickly Score Models in Data Science and Machine Learning
Description: A set of tools for quickly scoring models in data science and
machine learning. This toolset is written in C++ for blazing fast performance.
Author: Paul Hendricks [aut, cre]
Maintainer: Paul Hendricks <paul.hendricks.2013@owu.edu>
Diff between scorer versions 0.1.0 dated 2015-07-23 and 0.2.0 dated 2016-02-01
scorer-0.1.0/scorer/man/mae.Rd |only scorer-0.1.0/scorer/tests/testthat/test-e.R |only scorer-0.2.0/scorer/DESCRIPTION | 23 scorer-0.2.0/scorer/LICENSE | 4 scorer-0.2.0/scorer/MD5 | 62 +- scorer-0.2.0/scorer/NAMESPACE | 43 + scorer-0.2.0/scorer/R/RcppExports.R |only scorer-0.2.0/scorer/R/errors.R | 306 ++++++---- scorer-0.2.0/scorer/R/regression_metrics.R |only scorer-0.2.0/scorer/R/scorer.R | 21 scorer-0.2.0/scorer/README.md | 224 ++++++- scorer-0.2.0/scorer/inst |only scorer-0.2.0/scorer/man/absolute_error.Rd |only scorer-0.2.0/scorer/man/absolute_percent_error.Rd |only scorer-0.2.0/scorer/man/ae.Rd | 56 - scorer-0.2.0/scorer/man/ape.Rd | 58 + scorer-0.2.0/scorer/man/e.Rd | 54 - scorer-0.2.0/scorer/man/explained_variance_score.Rd |only scorer-0.2.0/scorer/man/log_error.Rd |only scorer-0.2.0/scorer/man/mape.Rd | 69 +- scorer-0.2.0/scorer/man/mean_absolute_error.Rd |only scorer-0.2.0/scorer/man/mean_absolute_percent_error.Rd |only scorer-0.2.0/scorer/man/mean_absolute_scaled_error.Rd |only scorer-0.2.0/scorer/man/mean_error.Rd |only scorer-0.2.0/scorer/man/mean_percent_error.Rd |only scorer-0.2.0/scorer/man/mean_squared_error.Rd |only scorer-0.2.0/scorer/man/mean_squared_log_error.Rd |only scorer-0.2.0/scorer/man/median_absolute_error.Rd |only scorer-0.2.0/scorer/man/median_absolute_percent_error.Rd |only scorer-0.2.0/scorer/man/median_percent_error.Rd |only scorer-0.2.0/scorer/man/median_squared_error.Rd |only scorer-0.2.0/scorer/man/median_squared_log_error.Rd |only scorer-0.2.0/scorer/man/pe.Rd | 56 - scorer-0.2.0/scorer/man/percent_error.Rd |only scorer-0.2.0/scorer/man/r2_score.Rd |only scorer-0.2.0/scorer/man/rmse.Rd | 67 +- scorer-0.2.0/scorer/man/scorer.Rd | 28 scorer-0.2.0/scorer/man/squared_error.Rd |only scorer-0.2.0/scorer/man/squared_log_error.Rd |only scorer-0.2.0/scorer/man/symmetric_mean_absolute_percent_error.Rd |only scorer-0.2.0/scorer/man/symmetric_median_absolute_percent_error.Rd |only scorer-0.2.0/scorer/man/total_variance_score.Rd |only scorer-0.2.0/scorer/man/unexplained_variance_score.Rd |only scorer-0.2.0/scorer/src |only scorer-0.2.0/scorer/tests/testthat.R | 8 scorer-0.2.0/scorer/tests/testthat/test-errors.R |only scorer-0.2.0/scorer/tests/testthat/test-regression_metrics.R |only 47 files changed, 699 insertions(+), 380 deletions(-)
More information about PortfolioEffectHFT at CRAN
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Title: Piecewise Structural Equation Modeling
Description: Implements piecewise structural equation models.
Author: Jon Lefcheck
Maintainer: Jon Lefcheck <jslefche@vims.edu>
Diff between piecewiseSEM versions 1.0.0 dated 2015-10-27 and 1.0.3 dated 2016-02-01
DESCRIPTION | 9 +-- MD5 | 47 +++++++++--------- NAMESPACE | 2 NEWS.md |only R/get.basis.set.R | 4 + R/get.dag.R | 3 + R/get.model.control.R | 51 +++++++++++--------- R/get.scaled.data.R |only R/partial.resid.R | 112 ++++++++++++++++++++++---------------------- R/sem.basis.set.R | 40 ++++++++++++++- R/sem.coefs.R | 77 ++++-------------------------- R/sem.lavaan.R | 58 ++++++++++++++++++---- R/sem.missing.paths.R | 22 +++++++- R/sem.model.fits.R | 71 +++++++++++++++++++++++---- README.md | 12 +++- build/vignette.rds |binary inst/CITATION | 14 ++--- inst/doc/piecewiseSEM.Rmd | 4 - inst/doc/piecewiseSEM.html | 20 +++---- man/get.scaled.data.Rd |only man/partial.resid.Rd | 107 +++++++++++++++++++++--------------------- man/piecewiseSEM-package.Rd | 6 +- man/sem.coefs.Rd | 2 man/sem.lavaan.Rd | 10 +++ man/sem.model.fits.Rd | 88 +++++++++++++++++++--------------- vignettes/piecewiseSEM.Rmd | 4 - 26 files changed, 444 insertions(+), 319 deletions(-)
Title: Group Sequential Design
Description: Derives group sequential designs and describes their properties.
Author: Keaven Anderson
Maintainer: Keaven Anderson <keaven_anderson@merck.com>
Diff between gsDesign versions 2.9-3 dated 2014-11-10 and 3.0-1 dated 2016-02-01
gsDesign-2.9-3/gsDesign/inst/doc/gsSurvTemplate.R |only gsDesign-2.9-3/gsDesign/inst/doc/gsSurvTemplateInstructions.R |only gsDesign-3.0-1/gsDesign/DESCRIPTION | 18 +- gsDesign-3.0-1/gsDesign/MD5 | 30 ++-- gsDesign-3.0-1/gsDesign/NAMESPACE | 30 +++- gsDesign-3.0-1/gsDesign/NEWS |only gsDesign-3.0-1/gsDesign/R/gsBinomialExact.R | 34 ++++ gsDesign-3.0-1/gsDesign/R/gsSurv.R | 59 +++++--- gsDesign-3.0-1/gsDesign/R/gsqplot.R | 10 - gsDesign-3.0-1/gsDesign/R/nBinomial1Sample.r |only gsDesign-3.0-1/gsDesign/build/vignette.rds |binary gsDesign-3.0-1/gsDesign/inst/doc/gsDesignManual.pdf |binary gsDesign-3.0-1/gsDesign/inst/doc/gsSurvTemplate.pdf |binary gsDesign-3.0-1/gsDesign/inst/doc/gsSurvTemplateInstructions.pdf |binary gsDesign-3.0-1/gsDesign/inst/unitTests/Makefile | 2 gsDesign-3.0-1/gsDesign/man/gsBinomialExact.Rd | 71 ++++++++-- gsDesign-3.0-1/gsDesign/man/nSurv.Rd | 3 gsDesign-3.0-1/gsDesign/man/sflogistic.Rd | 2 18 files changed, 194 insertions(+), 65 deletions(-)
Title: Create Graph Diagrams and Flowcharts Using R
Description: Create graph diagrams and flowcharts using R.
Author: Knut Sveidqvist [aut, cph] (mermaid.js library in htmlwidgets/lib,
http://github.com/knsv/mermaid/),
Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Chris Pettitt [aut, cph] (dagre-d3.js library in htmlwidgets/lib,
http://github.com/cpettitt/dagre-d3),
Mike Daines [aut, cph] (viz.js library in htmlwidgets/lib,
http://github.com/mdaines/viz.js/),
Andrei Kashcha [aut, cph] (vivagraphjs library in htmlwidgets/lib,
https://github.com/anvaka/VivaGraphJS),
Richard Iannone [aut, cre] (R interface)
Maintainer: Richard Iannone <riannone@me.com>
Diff between DiagrammeR versions 0.8.1 dated 2015-10-13 and 0.8.2 dated 2016-02-01
DiagrammeR-0.8.1/DiagrammeR/R/add_edges.R |only DiagrammeR-0.8.1/DiagrammeR/R/create_subgraph.R |only DiagrammeR-0.8.1/DiagrammeR/R/display_graph_object.R |only DiagrammeR-0.8.1/DiagrammeR/R/select_graph_from_series.R |only DiagrammeR-0.8.1/DiagrammeR/inst/img/DiagrammeR_graph_functions.png |only DiagrammeR-0.8.1/DiagrammeR/inst/img/edge_attributes.png |only DiagrammeR-0.8.1/DiagrammeR/inst/img/example_DiagrammeR_workflow.png |only DiagrammeR-0.8.1/DiagrammeR/inst/img/flights.png |only DiagrammeR-0.8.1/DiagrammeR/inst/img/grViz.png |only DiagrammeR-0.8.1/DiagrammeR/inst/img/layout_types.png |only DiagrammeR-0.8.1/DiagrammeR/inst/img/node_attributes.png |only DiagrammeR-0.8.1/DiagrammeR/man/add_edges.Rd |only DiagrammeR-0.8.1/DiagrammeR/man/create_subgraph.Rd |only DiagrammeR-0.8.1/DiagrammeR/man/display_graph_object.Rd |only DiagrammeR-0.8.1/DiagrammeR/man/select_graph_from_series.Rd |only DiagrammeR-0.8.1/DiagrammeR/tests/testthat/test-add_node_edges.R |only DiagrammeR-0.8.2/DiagrammeR/DESCRIPTION | 12 DiagrammeR-0.8.2/DiagrammeR/MD5 | 315 +++++--- DiagrammeR-0.8.2/DiagrammeR/NAMESPACE | 61 + DiagrammeR-0.8.2/DiagrammeR/R/add_edge.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_edge_df.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_edges_from_csv.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_edges_from_df.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_n_nodes.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_n_nodes_from_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_n_nodes_to_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_node.R | 267 +------ DiagrammeR-0.8.2/DiagrammeR/R/add_node_df.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_nodes_from_csv.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_nodes_from_df.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_to_series.R | 7 DiagrammeR-0.8.2/DiagrammeR/R/clear_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/combine_graphs.R | 5 DiagrammeR-0.8.2/DiagrammeR/R/country_graph.R | 2 DiagrammeR-0.8.2/DiagrammeR/R/create_edges.R | 118 ++- DiagrammeR-0.8.2/DiagrammeR/R/create_graph.R | 8 DiagrammeR-0.8.2/DiagrammeR/R/create_nodes.R | 95 +- DiagrammeR-0.8.2/DiagrammeR/R/create_random_graph.R | 110 ++- DiagrammeR-0.8.2/DiagrammeR/R/create_series.R | 7 DiagrammeR-0.8.2/DiagrammeR/R/create_subgraph_from_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/delete_edge.R | 17 DiagrammeR-0.8.2/DiagrammeR/R/delete_edges_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/delete_node.R | 112 ++- DiagrammeR-0.8.2/DiagrammeR/R/delete_nodes_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_edge_attr.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_edge_attr_from_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_edge_count_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_node_attr.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_node_attr_from_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_node_count_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/edge_count.R | 187 +---- 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2 DiagrammeR-0.8.2/DiagrammeR/man/node_type.Rd | 2 DiagrammeR-0.8.2/DiagrammeR/man/remove_from_series.Rd | 9 DiagrammeR-0.8.2/DiagrammeR/man/renderDiagrammeR.Rd | 2 DiagrammeR-0.8.2/DiagrammeR/man/renderGrViz.Rd | 2 DiagrammeR-0.8.2/DiagrammeR/man/render_graph.Rd | 4 DiagrammeR-0.8.2/DiagrammeR/man/render_graph_from_series.Rd | 9 DiagrammeR-0.8.2/DiagrammeR/man/replace_in_spec.Rd | 3 DiagrammeR-0.8.2/DiagrammeR/man/rescale_edge_attr_in_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/rescale_node_attr_in_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/select_edges.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/select_edges_by_node_id.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/select_last_edge.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/select_last_node.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/select_nodes.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/select_nodes_by_degree.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/select_nodes_by_id.Rd |only 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DiagrammeR-0.8.2/DiagrammeR/man/trigger_script.Rd | 8 DiagrammeR-0.8.2/DiagrammeR/man/visnetwork.Rd | 2 DiagrammeR-0.8.2/DiagrammeR/man/vivagraph.Rd | 2 DiagrammeR-0.8.2/DiagrammeR/man/withdraw_values.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/x11_hex.Rd | 2 DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-add_node_edge.R |only DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-add_node_edge_df.R |only DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-combine_graphs.R |only DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-create_combine_nodes.R | 11 DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-create_graph.R | 27 DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-create_random_graph.R |only DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-create_subgraph.R | 89 +- DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-delete_node_edge.R | 90 +- DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-get_nodes_edges.R | 46 - DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-get_paths.R |only DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-graph_series.R | 23 DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-import_graph.R | 52 + DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-node_edge_info.R | 27 DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-render_graph_series.R | 7 DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-selections.R |only DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-series_info.R | 7 DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-set_get_attrs.R |only DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-set_get_node_attr.R |only DiagrammeR-0.8.2/DiagrammeR/tests/testthat/test-traversals.R |only 229 files changed, 2102 insertions(+), 1504 deletions(-)
Title: Modeling Animal Movement with Continuous-Time Discrete-Space
Markov Chains
Description: Software to facilitates taking movement data in xyt format and pairing it with raster covariates within a continuous time Markov chain (CTMC) framework. As described in Hanks et al. (2015), this allows flexible modeling of movement in response to covariates (or covariate gradients) with model fitting possible within a Poisson GLM framework.
Author: Ephraim Hanks
Maintainer: Ephraim Hanks <hanks@psu.edu>
Diff between ctmcmove versions 1.0 dated 2015-10-14 and 1.1 dated 2016-02-01
DESCRIPTION | 8 ++++---- MD5 | 10 +++++++--- NAMESPACE | 1 + R/Pctmc.R |only R/ctmc.sim.R |only build/partial.rdb |binary man/Pctmc.Rd |only man/ctmc.sim.Rd |only 8 files changed, 12 insertions(+), 7 deletions(-)
Title: Interface with Azure Machine Learning Datasets, Experiments and
Web Services
Description: Functions and datasets to support Azure Machine Learning. This
allows you to interact with datasets, as well as publish and consume R functions
as API services.
Author: Andrie de Vries [aut, cre],
Microsoft Corporation [cph],
Revolution Analytics [cph] (Code adapted from the foreach package)
Maintainer: Andrie de Vries <adevries@microsoft.com>
Diff between AzureML versions 0.1.1 dated 2015-08-15 and 0.2.10 dated 2016-02-01
AzureML-0.1.1/AzureML/R/AzureML-package.R |only AzureML-0.1.1/AzureML/inst/doc/AzureML.R |only AzureML-0.1.1/AzureML/inst/doc/AzureML.Rmd |only AzureML-0.1.1/AzureML/inst/doc/AzureML.html |only AzureML-0.1.1/AzureML/man/consumeDataframe.Rd |only AzureML-0.1.1/AzureML/man/consumeFile.Rd |only AzureML-0.1.1/AzureML/man/consumeLists.Rd |only AzureML-0.1.1/AzureML/man/getEPDetails.Rd |only AzureML-0.1.1/AzureML/man/getEndpoints.Rd |only AzureML-0.1.1/AzureML/man/getFramework.Rd |only AzureML-0.1.1/AzureML/man/getFunctionString.Rd |only AzureML-0.1.1/AzureML/man/getWSDetails.Rd |only AzureML-0.1.1/AzureML/man/getWebServices.Rd |only AzureML-0.1.1/AzureML/man/packDependencies.Rd |only AzureML-0.1.1/AzureML/man/publishPreprocess.Rd |only AzureML-0.1.1/AzureML/man/updateWebService.Rd |only AzureML-0.1.1/AzureML/tests/testthat/testConsume.R |only AzureML-0.1.1/AzureML/tests/testthat/testDiscover.R |only AzureML-0.1.1/AzureML/tests/testthat/testPublish.R |only AzureML-0.1.1/AzureML/vignettes/AzureML.Rmd |only AzureML-0.2.10/AzureML/DESCRIPTION | 46 AzureML-0.2.10/AzureML/LICENSE | 2 AzureML-0.2.10/AzureML/MD5 | 103 + AzureML-0.2.10/AzureML/NAMESPACE | 54 AzureML-0.2.10/AzureML/R/azureml-defunct.R |only AzureML-0.2.10/AzureML/R/azureml-package.R |only AzureML-0.2.10/AzureML/R/config.R |only AzureML-0.2.10/AzureML/R/consume.R | 497 +------ AzureML-0.2.10/AzureML/R/datasets.R |only AzureML-0.2.10/AzureML/R/discover.R | 328 ++-- AzureML-0.2.10/AzureML/R/fetch.R |only AzureML-0.2.10/AzureML/R/getsyms.R |only AzureML-0.2.10/AzureML/R/internal.R |only AzureML-0.2.10/AzureML/R/methods.R |only AzureML-0.2.10/AzureML/R/publish.R | 666 +++------- AzureML-0.2.10/AzureML/R/services.R |only AzureML-0.2.10/AzureML/R/workspace.R |only AzureML-0.2.10/AzureML/R/zzz.R |only AzureML-0.2.10/AzureML/R/zzz_test_helpers.R |only AzureML-0.2.10/AzureML/build/vignette.rds |binary AzureML-0.2.10/AzureML/inst/COPYRIGHTS |only AzureML-0.2.10/AzureML/inst/doc/getting_started.Rmd |only AzureML-0.2.10/AzureML/inst/doc/getting_started.html |only AzureML-0.2.10/AzureML/inst/examples |only AzureML-0.2.10/AzureML/man/AzureML-deprecated.Rd |only AzureML-0.2.10/AzureML/man/AzureML-package.Rd | 48 AzureML-0.2.10/AzureML/man/azureSchema.Rd |only AzureML-0.2.10/AzureML/man/callAPI.Rd | 5 AzureML-0.2.10/AzureML/man/consume.Rd |only AzureML-0.2.10/AzureML/man/datasets.Rd |only AzureML-0.2.10/AzureML/man/delete.datasets.Rd |only AzureML-0.2.10/AzureML/man/deleteWebService.Rd |only AzureML-0.2.10/AzureML/man/discoverSchema.Rd | 21 AzureML-0.2.10/AzureML/man/download.datasets.Rd |only AzureML-0.2.10/AzureML/man/download.intermediate.dataset.Rd |only AzureML-0.2.10/AzureML/man/endpointHelp.Rd |only AzureML-0.2.10/AzureML/man/endpoints.Rd |only AzureML-0.2.10/AzureML/man/experiments.Rd |only AzureML-0.2.10/AzureML/man/figures |only AzureML-0.2.10/AzureML/man/getDetailsFromUrl.Rd | 8 AzureML-0.2.10/AzureML/man/is.Endpoint.Rd |only AzureML-0.2.10/AzureML/man/is.Service.Rd |only AzureML-0.2.10/AzureML/man/is.Workspace.Rd |only AzureML-0.2.10/AzureML/man/publishWebService.Rd | 330 ++++ AzureML-0.2.10/AzureML/man/read.AzureML.config.Rd |only AzureML-0.2.10/AzureML/man/refresh.Rd |only AzureML-0.2.10/AzureML/man/services.Rd |only AzureML-0.2.10/AzureML/man/upload.dataset.Rd |only AzureML-0.2.10/AzureML/man/workspace.Rd |only AzureML-0.2.10/AzureML/tests/testthat.R | 18 AzureML-0.2.10/AzureML/tests/testthat/config.json |only AzureML-0.2.10/AzureML/tests/testthat/test-1-workspace-no-config.R |only AzureML-0.2.10/AzureML/tests/testthat/test-1-workspace.R |only AzureML-0.2.10/AzureML/tests/testthat/test-2-datasets-upload-download-delete.R |only AzureML-0.2.10/AzureML/tests/testthat/test-3-experiments-download.R |only AzureML-0.2.10/AzureML/tests/testthat/test-4-download-each-dataset-type.R |only AzureML-0.2.10/AzureML/tests/testthat/test-5-try_fetch.R |only AzureML-0.2.10/AzureML/tests/testthat/test-6-publish.R |only AzureML-0.2.10/AzureML/tests/testthat/test-7-discover-schema.R |only AzureML-0.2.10/AzureML/tests/testthat/test-7-discover.R |only AzureML-0.2.10/AzureML/tests/testthat/test-99-final.R |only AzureML-0.2.10/AzureML/vignettes/getting_started.Rmd |only AzureML-0.2.10/AzureML/vignettes/getting_started.Rmd-original |only AzureML-0.2.10/AzureML/vignettes/getting_started.md |only 84 files changed, 989 insertions(+), 1137 deletions(-)
Title: Interactive Plotting for Functional Data Analyses
Description: Interactive plotting for functional data analyses.
Author: Julia Wrobel [aut, cre],
Jeff Goldsmith [aut]
Maintainer: Julia Wrobel <jw3134@cumc.columbia.edu>
Diff between refund.shiny versions 0.1 dated 2015-09-12 and 0.2.0 dated 2016-02-01
DESCRIPTION | 12 MD5 | 48 +- NAMESPACE | 32 - R/createInputCall.R | 126 +++--- R/detectOutliers.R | 202 +++++------ R/downloadPlot.R | 82 ++-- R/plot_shiny.R | 238 +++++++------ R/plot_shiny.fosr.R | 564 +++++++++++++++--------------- R/plot_shiny.fpca.R | 526 ++++++++++++++-------------- R/plot_shiny.lfpca.R |only R/plot_shiny.mfpca.R | 878 ++++++++++++++++++++++++------------------------ R/varPercent.R | 44 +- README.md | 30 - man/combinat.Rd | 40 +- man/createInputCall.Rd | 44 +- man/fMBD.Rd | 36 - man/mfpcaCalls.Rd | 54 +- man/outliers.Rd | 56 +-- man/plot_shiny.Rd | 256 +++++++------ man/plot_shiny.fosr.Rd | 62 +-- man/plot_shiny.fpca.Rd | 62 +-- man/plot_shiny.lfpca.Rd |only man/plot_shiny.mfpca.Rd | 62 +-- man/savePDF.Rd | 42 +- man/savePlot.Rd | 42 +- man/varPercent.Rd | 50 +- 26 files changed, 1827 insertions(+), 1761 deletions(-)
Title: Interface to the 'Handsontable.js' Library
Description: An R interface to the 'Handsontable' JavaScript library, which is a
minimalist Excel-like data grid editor.
Author: Jonathan Owen [aut, cre, cph],
Jeff Allen [ctb],
Yihui Xie [ctb],
Enzo Martoglio [ctb],
Warpechowski Marcin [ctb, cph] (Handsontable.js library),
Handsoncode sp. z o.o. [ctb, cph] (Handsontable.js library),
Aisch Gregor [ctb, cph] (Chroma.js library),
Wood Tim [ctb, cph] (Moment.js library),
Chernev Iskren [ctb, cph] (Moment.js library),
Moment.js contributors [ctb, cph] (Moment.js library),
Bushell David [ctb, cph] (Pikaday.js library),
jQuery Foundation [ctb, cph] (jQuery.js library),
Splunk Inc [ctb, cph] (Sparkline.js library),
Rohan Jon [ctb, cph] (ZeroClipboard library),
Greene James [ctb, cph] (ZeroClipboard library)
Maintainer: Jonathan Owen <jonathanro@gmail.com>
Diff between rhandsontable versions 0.2.3 dated 2015-11-29 and 0.3 dated 2016-02-01
rhandsontable-0.2.3/rhandsontable/inst/htmlwidgets/lib/handsontable/handsontable.full.css |only rhandsontable-0.2.3/rhandsontable/inst/htmlwidgets/lib/handsontable/handsontable.full.js |only rhandsontable-0.2.3/rhandsontable/inst/htmlwidgets/lib/moment |only rhandsontable-0.2.3/rhandsontable/inst/htmlwidgets/lib/pikaday |only rhandsontable-0.3/rhandsontable/DESCRIPTION | 14 rhandsontable-0.3/rhandsontable/LICENSE | 4 rhandsontable-0.3/rhandsontable/LICENSE.note | 25 rhandsontable-0.3/rhandsontable/MD5 | 29 - rhandsontable-0.3/rhandsontable/NEWS | 9 rhandsontable-0.3/rhandsontable/R/rhandsontable.R | 13 rhandsontable-0.3/rhandsontable/build/vignette.rds |binary rhandsontable-0.3/rhandsontable/inst/doc/intro_rhandsontable.html | 255 +++++----- rhandsontable-0.3/rhandsontable/inst/htmlwidgets/lib/handsontable/handsontable.full.min.css |only rhandsontable-0.3/rhandsontable/inst/htmlwidgets/lib/handsontable/handsontable.full.min.js |only rhandsontable-0.3/rhandsontable/inst/htmlwidgets/rhandsontable.css | 5 rhandsontable-0.3/rhandsontable/inst/htmlwidgets/rhandsontable.js | 47 - rhandsontable-0.3/rhandsontable/inst/htmlwidgets/rhandsontable.yaml | 23 rhandsontable-0.3/rhandsontable/man/hot_table.Rd | 9 18 files changed, 237 insertions(+), 196 deletions(-)
Title: Matrix-Based Partial Least Squares Estimation
Description: Partial Least Squares Path Modeling
algorithm and related algorithms. The algorithm implementations aim for
computational efficiency using matrix algebra and covariance data. The
package is designed toward Monte Carlo simulations and includes functions
to perform simple Monte Carlo simulations.
Author: Mikko Rönkkö [aut, cre]
Maintainer: Mikko Rönkkö <mikko.ronkko@aalto.fi>
Diff between matrixpls versions 0.6.0 dated 2015-11-24 and 0.7.0 dated 2016-02-01
DESCRIPTION | 10 +- MD5 | 29 +++--- NAMESPACE | 12 +- R/matrixpls.R | 7 - R/matrixpls.blindfold.R |only R/matrixpls.boot.R | 179 ++++++++++++++++++++++++++++++++++++++----- R/matrixpls.estimators.R | 2 R/matrixpls.plspm.R | 75 ++++++++++++------ R/matrixpls.postestimation.R | 20 +++- R/matrixpls.sempls.R | 16 +-- R/matrixpls.sim.R | 14 ++- R/matrixpls.util.R | 6 - R/matrixpls.weights.R | 2 man/GSCA.Rd | 3 man/matrixpls.blindfold.Rd |only man/matrixpls.boot.Rd | 76 ++++++++++++++++++ man/q2.Rd |only 17 files changed, 356 insertions(+), 95 deletions(-)
Title: Kernel Deep Stacking Networks
Description: Contains functions for estimation and model selection of kernel
deep stacking networks. The model selection includes direct optimization or
model based alternatives with arbitrary loss functions.
Author: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de> and Matthias Schmid
<matthias.schmid@imbie.uni-bonn.de>
Maintainer: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>
Diff between kernDeepStackNet versions 1.0.0 dated 2015-11-08 and 1.0.1 dated 2016-02-01
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/KDSNlossFunc.R | 5 +++-- man/kernDeepStackNet-package.Rd | 17 ++++++++--------- man/tuneMboCvKDSN.Rd | 2 +- man/tuneMboLevelCvKDSN.Rd | 2 +- tests/KDSNmodelBasedOpt_tests_tune_KDSN_EGO.R | 2 +- tests/KDSNmodelBasedOpt_tests_tune_KDSN_level_EGO.R | 2 +- 8 files changed, 26 insertions(+), 26 deletions(-)
More information about kernDeepStackNet at CRAN
Permanent link
Title: Statistical Tests and Utilities for Genetic Association
Description: A collection of statistical tests for genetic association studies.
Author: Dr. Kai Wang
Maintainer: Kai Wang <kai-wang@uiowa.edu>
Diff between iGasso versions 1.2 dated 2014-06-18 and 1.3 dated 2016-02-01
DESCRIPTION | 12 ++++++------ MD5 | 8 +++++--- NAMESPACE | 4 +++- R/SKATplus.R |only man/SKATplus.Rd |only man/iGasso-package.Rd | 1 - 6 files changed, 14 insertions(+), 11 deletions(-)
Title: Mathematical Modeling of Infectious Disease
Description: Tools for simulating mathematical models of infectious disease.
Epidemic model classes include deterministic compartmental models,
stochastic agent-based, and stochastic network models. Network models use
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features
an easy API for extending these templates to address novel scientific research
aims.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Emily Beylerian [ctb],
Li Wang [ctb],
Skye Bender-deMoll [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between EpiModel versions 1.2.2 dated 2015-11-03 and 1.2.4 dated 2016-02-01
DESCRIPTION | 28 ++++++------ MD5 | 37 ++++++++-------- NAMESPACE | 1 NEWS | 18 +++++++ R/EpiModel-package.r | 4 - R/control.R | 18 +++++++ R/net.mod.init.R | 17 +++---- R/net.mod.simnet.R | 37 +++++----------- R/netest.R | 70 ++++++++++++++++++++++++++++++ R/plot.R | 3 - build/vignette.rds |binary inst/doc/Intro.Rmd | 15 +++--- inst/doc/Intro.html | 93 +++++++++++++++++++---------------------- inst/shiny/epinet/server.R | 56 ++++++++++++++++++++++++ inst/shiny/epinet/ui.R | 16 ++----- man/EpiModel-package.Rd | 4 - man/control.net.Rd | 12 +++-- man/update_dissolution.Rd |only tests/testthat/test-net-long.R | 49 +++++++++++++++++++++ vignettes/Intro.Rmd | 15 +++--- 20 files changed, 343 insertions(+), 150 deletions(-)
Title: Relabelling MCMC Outputs of Mixture Models
Description: The Bayesian estimation of mixture models (and more general hidden Markov models) suffers from the label switching phenomenon, making the MCMC output non-identifiable. This package can be used in order to deal with this problem using various relabelling algorithms.
Author: Panagiotis Papastamoulis
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between label.switching versions 1.4 dated 2015-07-06 and 1.5 dated 2016-02-01
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- inst |only man/label.switching-package.Rd | 2 ++ man/label.switching.Rd | 5 +++++ 5 files changed, 15 insertions(+), 7 deletions(-)
More information about label.switching at CRAN
Permanent link
Title: Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Description: Functions for identification and transportation of causal effects. Provides a conditional causal effect identification algorithm (IDC) by Ilya Shpitser and Judea Pearl, and algorithms for z-identifiability, transportability, z-transportability and meta-transportability of causal effects by Elias Bareinboim and Judea Pearl. All of the previously mentioned algorithms are based on a causal effect identification algorithm by Jin Tian.
Author: Santtu Tikka
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between causaleffect versions 1.2.2 dated 2016-01-25 and 1.2.3 dated 2016-02-01
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NEWS | 3 +++ R/causal.effect.R | 2 +- R/deconstruct.R | 30 ++++++++++++++++++++++++------ R/gather.R | 8 ++++---- R/is.prefix.R |only R/join.R | 14 +++++++------- R/parse.expression.R | 7 ++++++- R/simplify.R | 21 ++++++++++++++------- inst/doc/causaleffect.pdf |binary 11 files changed, 73 insertions(+), 39 deletions(-)
Title: Analysing Conditional Income Distributions
Description: Functions for the analysis of income distributions for subgroups of the population as defined by a set of variables like age, gender, region, etc. This entails a Kolmogorov-Smirnov test for a mixture distribution as well as functions for moments, inequality measures, entropy measures and polarisation measures of income distributions. This package thus aides the analysis of income inequality by offering tools for the exploratory analysis of income distributions at the disaggregated level.
Author: Alexander Sohn
Maintainer: Alexander Sohn <asohn@uni-goettingen.de>
Diff between acid versions 1.0 dated 2014-12-04 and 1.1 dated 2016-02-01
acid-1.0/acid/R/gini.GB2.R |only acid-1.0/acid/man/entropy.GB2.Rd |only acid-1.0/acid/man/gini.GB2.Rd |only acid-1.1/acid/DESCRIPTION | 15 +++--- acid-1.1/acid/MD5 | 74 +++++++++++++++++++++++++++------ acid-1.1/acid/NAMESPACE | 9 +++- acid-1.1/acid/R/atkinson.GB2.R |only acid-1.1/acid/R/atkinson.R |only acid-1.1/acid/R/atkinson.den.R |only acid-1.1/acid/R/atkinson.md.R |only acid-1.1/acid/R/confband.kneib.R |only acid-1.1/acid/R/confband.pw.R |only acid-1.1/acid/R/den.md.R |only acid-1.1/acid/R/entropy.GB2.R | 27 ++++++------ acid-1.1/acid/R/entropy.R | 12 ++--- acid-1.1/acid/R/entropy.md.R |only acid-1.1/acid/R/frac.ranks.R |only acid-1.1/acid/R/gini.Dag.R |only acid-1.1/acid/R/gini.den.R |only acid-1.1/acid/R/gini.gamma.R |only acid-1.1/acid/R/gini.md.R |only acid-1.1/acid/R/ineq.md.R |only acid-1.1/acid/R/polarisation.EGR.R |only acid-1.1/acid/R/polarisation.ER.R |only acid-1.1/acid/R/pval.md.R |only acid-1.1/acid/R/sadr.test.R |only acid-1.1/acid/R/sgini.R |only acid-1.1/acid/R/sgini.den.R |only acid-1.1/acid/R/theil.gamma.R |only acid-1.1/acid/R/weighted.atkinson.R |only acid-1.1/acid/R/weighted.entropy.R | 12 ++--- acid-1.1/acid/R/ysample.md.R |only acid-1.1/acid/data/dist.para.t.rda |only acid-1.1/acid/data/params.rda |only acid-1.1/acid/man/acid-package.Rd | 22 ++++++--- acid-1.1/acid/man/atkinson.GB2.Rd |only acid-1.1/acid/man/atkinson.Rd |only acid-1.1/acid/man/atkinson.den.Rd |only acid-1.1/acid/man/atkinson.md.Rd |only acid-1.1/acid/man/confband.kneib.Rd |only acid-1.1/acid/man/confband.pw.Rd |only acid-1.1/acid/man/dat.Rd | 2 acid-1.1/acid/man/den.md.Rd |only acid-1.1/acid/man/dist.para.t.Rd |only acid-1.1/acid/man/entropy.GB2.rd |only acid-1.1/acid/man/entropy.Rd | 4 - acid-1.1/acid/man/entropy.md.Rd |only acid-1.1/acid/man/frac.ranks.Rd |only acid-1.1/acid/man/gini.Dag.Rd |only acid-1.1/acid/man/gini.Rd | 11 +--- acid-1.1/acid/man/gini.den.Rd |only acid-1.1/acid/man/gini.gamma.Rd |only acid-1.1/acid/man/gini.md.Rd |only acid-1.1/acid/man/ineq.md.Rd |only acid-1.1/acid/man/params.Rd |only acid-1.1/acid/man/polarisation.EGR.Rd |only acid-1.1/acid/man/polarisation.ER.Rd |only acid-1.1/acid/man/pval.md.Rd |only acid-1.1/acid/man/sadr.test.Rd |only acid-1.1/acid/man/sgini.Rd |only acid-1.1/acid/man/sgini.den.Rd |only acid-1.1/acid/man/theil.gamma.Rd |only acid-1.1/acid/man/weighted.atkinson.Rd |only acid-1.1/acid/man/weighted.entropy.Rd | 4 - acid-1.1/acid/man/ysample.md.Rd |only 65 files changed, 126 insertions(+), 66 deletions(-)
Title: Test Analysis Modules
Description:
Includes marginal and joint maximum likelihood
estimation of uni- and multidimensional item response models
(Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets,
Nominal Item Response, Structured Latent Class Analysis,
Mixture Distribution IRT Models, Located Latent Class Models).
Latent regression models and plausible value imputation are
also supported.
Author:
Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 1.15-0 dated 2015-12-16 and 1.16-0 dated 2016-02-01
DESCRIPTION | 16 +- MD5 | 190 ++++++++++++------------ NAMESPACE | 272 ++++++++++++++++------------------- R/IRT.WrightMap.R | 4 R/IRT.drawPV.R | 2 R/IRT.linearCFA.R | 16 +- R/IRT.simulate.R | 6 R/IRT.threshold.R | 4 R/IRT.truescore.R | 23 ++ R/IRTLikelihood.cfa.R | 4 R/Mstep_slope.v2.R | 33 +++- R/TAM_utils.R | 2 R/anova.tam.R | 2 R/cfa.extract.itempars.R | 22 +- R/designMatrices.mfr.R | 4 R/designMatrices.mfr2.R | 16 +- R/designMatrices.mfr_aux.R | 14 - R/designMatrices.mfr_aux2.R | 8 - R/designMatrices_aux.R | 2 R/designMatrices_aux2.R | 16 +- R/dmvnorm_TAM.R | 4 R/latreg.mstep.regression.R | 29 ++- R/lavaanify.sirt.v1.R | 2 R/mfr.dataprep.R | 6 R/mml.3pl.calc_prob.v5.R | 2 R/mml.3pl.distrubutionmoments.R | 2 R/msq.itemfit.R | 6 R/msq.itemfitWLE.R | 12 - R/mstep.regression.R | 20 +- R/plot.IRT.informationCurves.R | 4 R/plot.ctt.R | 20 +- R/plot.tam.R | 94 ++++++------ R/plotDevianceTAM.R | 6 R/stud_prior.R | 4 R/summary.msq.itemfit.R | 2 R/summary.msq.itemfitWLE.R | 2 R/summary.tam.R | 2 R/summary.tam.jml.R | 2 R/summary.tam.mml.3pl.R | 6 R/summary.tamaan.3pl.intro.R | 2 R/summary.tamaan.aux.R | 4 R/tam.Q3.R | 2 R/tam.ctt.R | 8 - R/tam.fa.aux.R | 12 - R/tam.fit.R | 15 - R/tam.jml.R | 8 - R/tam.jml.wle.R | 2 R/tam.jml.xsi2.R | 2 R/tam.jml2.R | 12 - R/tam.latreg.R | 40 ++--- R/tam.mml.2pl.R | 71 ++++----- R/tam.mml.3pl.R | 27 +-- R/tam.mml.3pl.algorithm.R | 6 R/tam.mml.3pl.est.guessing.R | 20 +- R/tam.mml.3pl.est.intercepts.R | 8 - R/tam.mml.3pl.est.slopes.R | 13 - R/tam.mml.3pl.preproc.R | 4 R/tam.mml.R | 11 - R/tam.mml.mfr.R | 54 +++--- R/tam.modelfit.R | 18 +- R/tam.pv.R | 37 ++-- R/tam.q3.aux.R | 2 R/tam.se.R | 3 R/tam.wle.R | 12 - R/tamaan.3pl.lca.R | 8 - R/tamaan.3pl.loclca.R | 12 - R/tamaan.3pl.mixture.R | 10 - R/tamaan.3pl.olca.R | 8 - R/zzz.R | 8 - inst/NEWS | 28 +++ man/IRT.simulate.Rd | 22 +- man/IRT.threshold.Rd | 6 man/IRT.truescore.Rd | 37 ++++ man/TAM-package.Rd | 6 man/anova.tam.Rd | 2 man/data.cqc.Rd | 4 man/data.fims.Aus.Jpn.Rd | 4 man/data.numeracy.Rd | 10 - man/data.sim.mfr.Rd | 4 man/data.sim.rasch.Rd | 18 +- man/data.timssAusTwn.Rd | 6 man/tam.fa.Rd | 4 man/tam.fit.Rd | 16 +- man/tam.latreg.Rd | 4 man/tam.mml.3pl.Rd | 36 ++-- man/tam.mml.Rd | 79 +++++----- man/tam.pv.Rd | 22 +- src/irt_likelihood_cfa2.cpp | 7 src/msq_itemfit.cpp | 2 src/tam_calcexp.cpp | 15 + src/tam_ctt_c.cpp | 10 - src/tam_fit_simul.cpp | 8 - src/tam_mml_3pl_helper_functions.cpp | 24 +-- src/tam_mml_mfr_helper.cpp | 6 src/tam_modelfit_aux.cpp | 26 +-- src/tamwle_helper_ccode.cpp | 9 - 96 files changed, 941 insertions(+), 794 deletions(-)
Title: Computes Copula using Ranks and Subsampling
Description: Essentially a discussion tool about estimation of copula using ranks and subsampling.
Author: Jerome Collet
Maintainer: Jerome Collet <jeromepcollet@gmail.com>
Diff between subrank versions 0.9.5 dated 2016-01-29 and 0.9.6 dated 2016-02-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/subrank-package.Rd | 2 +- src/lienR.h | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Flexible Modelling Functions for Epidemiological Data Analysis
Description: Provides flexible model fitting used in epidemiological data
analysis by a unified model specification, along with some data manipulation
functions. This package covers fitting of variety models including Cox
regression models, linear regression models, Poisson regression models, logistic
models and others whose likelihood is expressed in negative binomial, gamma and
Weibull distributions.
Author: Kazutaka Doi [aut,cre],
Kei Sakabe [ctb],
Masataka Taruri [ctb]
Maintainer: Kazutaka Doi <kztkdi@gmail.com>
Diff between epifit versions 0.0.4 dated 2015-11-02 and 0.0.5 dated 2016-02-01
DESCRIPTION | 25 ++++++++++--------- MD5 | 48 ++++++++++++++++++++++---------------- NAMESPACE | 7 +++-- NEWS | 7 +++++ R/AIC.epifit.R | 2 - R/convertFromFactor.R |only R/countNA.R | 4 +-- R/epifit-package.R | 8 ++++-- R/listNumericIncompatibility.R |only R/modes.R |only R/pullOneValue.R | 3 +- R/showContents.R |only man/AIC.epifit.Rd | 4 +-- man/calcAge.Rd | 2 - man/convertFromFactor.Rd |only man/convertNA.Rd | 2 - man/countNA.Rd | 6 ++-- man/epifit-package.Rd | 9 +++++-- man/epifit.Rd | 2 - man/extractVariable.Rd | 2 - man/listNumericIncompatibility.Rd |only man/modes.Rd |only man/print.epifit.Rd | 2 - man/pullOneValue.Rd | 5 ++- man/pytable.Rd | 2 - man/removeVariable.Rd | 2 - man/showContents.Rd |only src/select.cpp | 1 src/select.h | 2 + 29 files changed, 88 insertions(+), 57 deletions(-)