Title: Turner Miscellaneous
Description: Miscellaneous data and utility functions
for manipulating data and your R environment.
Author: Stephen Turner <vustephen@gmail.com>
Maintainer: Stephen Turner <vustephen@gmail.com>
Diff between Tmisc versions 0.1.4 dated 2016-01-25 and 0.1.5 dated 2016-02-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++++-- NAMESPACE | 2 ++ R/dokuwiki.R |only R/ellipses.R |only man/dokuwiki.Rd |only man/ellipses.Rd |only 7 files changed, 11 insertions(+), 5 deletions(-)
Title: Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Description: A tool for producing synthetic versions of microdata containing confidential information so that they are safe to be released to users for exploratory analysis. The key objective of generating synthetic data is to replace sensitive original values with synthetic ones causing minimal distortion of the statistical information contained in the data set. Variables, which can be categorical or continuous, are synthesised one-by-one using sequential modelling. Replacements are generated by drawing from conditional distributions fitted to the original data using parametric or classification and regression trees models. Data are synthesised via the function syn() which can be largely automated, if default settings are used, or with methods defined by the user. Optional parameters can be used to influence the disclosure risk and the analytical quality of the synthesised data.
Author: Beata Nowok, Gillian M Raab, Joshua Snoke and Chris Dibben
Maintainer: Beata Nowok <beata.nowok@gmail.com>
Diff between synthpop versions 1.1-1 dated 2015-07-08 and 1.2-0 dated 2016-02-03
DESCRIPTION | 13 ++-- MD5 | 36 ++++++----- NAMESPACE | 24 ++++--- NEWS | 15 ++++ R/IO.r | 4 - R/compare.syn.r | 152 +++++++++++++++++++++++++++++++++-------------- R/functions.syn.r | 87 ++++++++++++++++++++++++++ R/methods.syn.r | 97 ++++++++++++++++++++--------- R/padMis.syn.r | 9 +- R/sampler.syn.r | 7 +- R/syn.r | 8 +- R/utility.syn.r |only inst/doc/synthpop.pdf |binary man/compare.fit.synds.Rd | 31 +++++++-- man/summary.fit.synds.Rd | 4 - man/syn.Rd | 3 man/syn.bag.Rd |only man/syn.cart.Rd | 2 man/syn.rf.Rd |only man/synthpop-package.Rd | 4 - man/utility.synds.Rd |only 21 files changed, 366 insertions(+), 130 deletions(-)
Title: Read and Write MAT Files and Call MATLAB from Within R
Description: Methods readMat() and writeMat() for reading and writing MAT files. For user with MATLAB v6 or newer installed (either locally or on a remote host), the package also provides methods for controlling MATLAB (trademark) via R and sending and retrieving data between R and MATLAB.
Author: Henrik Bengtsson [aut, cre, cph], Andy Jacobson [ctb] (Internal MAT v4 reader), Jason Riedy [ctb] (Support for reading compressed files (via 'Rcompression'), sparse matrices and UTF-encoded strings.)
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.matlab versions 3.3.0 dated 2015-09-22 and 3.4.0 dated 2016-02-03
R.matlab-3.3.0/R.matlab/R/Sys.setenv.patch.R |only R.matlab-3.3.0/R.matlab/man/Sys.setenv.Rd |only R.matlab-3.4.0/R.matlab/DESCRIPTION | 12 R.matlab-3.4.0/R.matlab/MD5 | 26 R.matlab-3.4.0/R.matlab/NAMESPACE | 1 R.matlab-3.4.0/R.matlab/NEWS | 17 R.matlab-3.4.0/R.matlab/R/readMat.R | 144 +- R.matlab-3.4.0/R.matlab/R/writeMat.R | 513 +++++----- R.matlab-3.4.0/R.matlab/R/zzz.R | 13 R.matlab-3.4.0/R.matlab/inst/mat-files/aFunction,arraytype=16-v5.mat |only R.matlab-3.4.0/R.matlab/man/R.matlab-package.Rd | 4 R.matlab-3.4.0/R.matlab/man/readMat.Rd | 13 R.matlab-3.4.0/R.matlab/man/writeMat.Rd | 23 R.matlab-3.4.0/R.matlab/tests/octave-bug42562-empty.mat |only R.matlab-3.4.0/R.matlab/tests/octave-bug42562-scalar.mat |only R.matlab-3.4.0/R.matlab/tests/octave-bug42562-vector.mat |only R.matlab-3.4.0/R.matlab/tests/writeMat.R | 33 17 files changed, 481 insertions(+), 318 deletions(-)
Title: Helpers for Parameters in Black-Box Optimization, Tuning and
Machine Learning
Description: Functions for parameter descriptions and operations in black-box
optimization, tuning and machine learning. Parameters can be described
(type, constraints, defaults, etc.), combined to parameter sets and can in
general be programmed on. A useful OptPath object (archive) to log function
evaluations is also provided.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Bossek [aut],
Daniel Horn [aut],
Karin Schork [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between ParamHelpers versions 1.6 dated 2015-11-18 and 1.7 dated 2016-02-03
DESCRIPTION | 6 +-- MD5 | 49 ++++++++++++++--------------- NEWS | 4 ++ R/OptPathDF_setter.R | 2 - R/aParam.R | 2 + R/dfRowsToList.R | 27 ++++++++++++++- R/generateDesign.R | 28 +++++----------- R/generateGridDesign.R | 7 +++- R/generateRandomDesign.R | 8 ++-- R/isFeasible.R | 5 ++ R/makeLearnerParamFuns.R | 4 +- R/makeParamFuns.R | 4 +- R/utils.R | 20 +++++++++++ man/LearnerParam.Rd | 3 + man/Param.Rd | 4 +- man/dfRowsToList.Rd | 14 +++++++- man/generateDesign.Rd | 1 man/generateGridDesign.Rd | 3 + man/generateRandomDesign.Rd | 1 man/isFeasible.Rd | 7 +++- tests/testthat/Rplots.pdf |only tests/testthat/test_dfRowToList.R | 13 +++++++ tests/testthat/test_filterParams.R | 2 - tests/testthat/test_generateDesign.R | 7 ++-- tests/testthat/test_generateGridDesign.R | 7 +--- tests/testthat/test_generateRandomDesign.R | 9 +++++ 26 files changed, 166 insertions(+), 71 deletions(-)
More information about photobiologyWavebands at CRAN
Permanent link
Title: Latent Class Item Response Theory (LC-IRT) Models under
Within-Item Multidimensionality
Description: Framework for the Item Response Theory analysis of dichotomous and ordinal polytomous outcomes under the assumption of within-item multidimensionality and discreteness of the latent traits. The fitting algorithms allow for missing responses and for different item parametrizations and are based on the Expectation-Maximization paradigm. Individual covariates affecting the class weights may be included in the new version.
Author: Francesco Bartolucci, Silvia Bacci - University of Perugia (IT)
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>
Diff between MLCIRTwithin versions 1.0 dated 2015-06-03 and 1.1 dated 2016-02-03
DESCRIPTION | 14 MD5 | 42 NAMESPACE | 4 R/est_multi_glob_gen.R | 228 ++-- R/est_multi_poly_between.R |only R/est_multi_poly_within.R | 1566 +++++++++++++++++++--------------- R/inv_glob.R |only R/lk_obs_score_between.R |only R/print.est_multi_poly_between.R |only R/search.model_between.R |only R/search.model_within.R |only R/summary.est_multi_poly_between.R |only R/summary.est_multi_poly_within.R | 6 data/SF12.RData |only data/SF12_nomiss.RData |only man/MLCIRTwithin-package.Rd | 86 + man/RLMS.Rd | 24 man/SF12.Rd |only man/SF12_nomiss.Rd |only man/est_multi_glob_gen.Rd | 7 man/est_multi_poly_between.Rd |only man/est_multi_poly_within.Rd | 145 ++- man/inv_glob.Rd |only man/lk_obs_score_between.Rd |only man/lk_obs_score_within.Rd | 13 man/print.est_multi_poly_between.Rd |only man/print.est_multi_poly_within.Rd | 4 man/search.model_between.Rd |only man/search.model_within.Rd |only man/summary.est_multi_poly_between.Rd |only man/summary.est_multi_poly_within.Rd | 2 31 files changed, 1228 insertions(+), 913 deletions(-)
Title: Multivariate Distance Matrix Regression
Description: Allows a user to conduct multivariate distance matrix regression using analytic p-values and compute measures of effect size.
Author: Daniel B. McArtor (dmcartor@nd.edu) [aut, cre]
Maintainer: Daniel B. McArtor <dmcartor@nd.edu>
Diff between MDMR versions 0.2.1 dated 2016-01-27 and 0.3.0 dated 2016-02-03
MDMR-0.2.1/MDMR/build/partial.rdb |only MDMR-0.3.0/MDMR/DESCRIPTION | 8 MDMR-0.3.0/MDMR/MD5 | 17 MDMR-0.3.0/MDMR/R/mdmr.R | 626 ++++++++++++++++++++-------- MDMR-0.3.0/MDMR/inst/doc/mdmr-vignette.html | 34 - MDMR-0.3.0/MDMR/man/delta.Rd | 2 MDMR-0.3.0/MDMR/man/gower.Rd | 2 MDMR-0.3.0/MDMR/man/mdmr.Rd | 47 +- MDMR-0.3.0/MDMR/man/print.mdmr.Rd | 2 MDMR-0.3.0/MDMR/man/summary.mdmr.Rd | 32 + 10 files changed, 567 insertions(+), 203 deletions(-)
Title: Linear Quantile Mixed Models
Description: This is a collection of functions to fit quantile regression models for independent and hierarchical data.
Author: Marco Geraci
Maintainer: Marco Geraci <geraci@mailbox.sc.edu>
Diff between lqmm versions 1.5.2 dated 2015-09-23 and 1.5.3 dated 2016-02-03
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 6 ++++++ R/lqmm.R | 2 +- inst/doc/lqmm.pdf |binary man/VarCorr.Rd | 8 ++++++-- man/lqmm-package.Rd | 4 ++-- 7 files changed, 26 insertions(+), 16 deletions(-)
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between HH versions 3.1-24 dated 2015-12-15 and 3.1-25 dated 2016-02-03
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NEWS | 19 ++++++++++++++++++- R/ae.dotplot7.R | 21 ++++++++++++--------- R/likert.formula.R | 2 +- R/mmcplot.R | 19 +++++++++++++++---- inst/CITATION | 12 ++++++------ man/HH.package.Rd | 4 ++-- man/HHscriptnames.Rd | 2 +- man/ae.dotplot7.Rd | 10 ++++++++-- man/bivariateNormal.Rd | 2 +- man/hh.Rd | 13 +++++++++++-- man/interaction2wt.Rd | 2 +- man/mmcisomeans.Rd | 9 ++++++--- man/mmcplot.Rd | 2 +- man/panel.confintMMC.Rd | 6 +++++- 16 files changed, 108 insertions(+), 55 deletions(-)
Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description:
Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between effects versions 3.0-5 dated 2015-12-14 and 3.0-6 dated 2016-02-03
DESCRIPTION | 12 - MD5 | 10 - NEWS | 382 +++++++++++++++++++++++++++---------------------------- R/effectsmer.R | 16 +- R/plot-methods.R | 2 R/utilities.R | 2 6 files changed, 215 insertions(+), 209 deletions(-)
Title: Spatial Generalised Linear Mixed Models for Areal Unit Data
Description: Implements a class of spatial generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (McMC) simulation. The response variable can be binomial, Gaussian or Poisson. The spatial autocorrelation is modelled by a set of random effects, which are assigned a conditional autoregressive (CAR) prior distribution. A number of different CAR priors are available for the random effects, and full details are given in the vignette accompanying this package. The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development was supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1.
Author: Duncan Lee
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayes versions 4.3 dated 2015-09-16 and 4.4 dated 2016-02-03
CARBayes-4.3/CARBayes/R/S.CARiar.R |only CARBayes-4.3/CARBayes/R/S.independent.R |only CARBayes-4.3/CARBayes/R/binomial.iarCAR.R |only CARBayes-4.3/CARBayes/R/binomial.independent.R |only CARBayes-4.3/CARBayes/R/gaussian.iarCAR.R |only CARBayes-4.3/CARBayes/R/poisson.iarCAR.R |only CARBayes-4.3/CARBayes/R/poisson.independent.R |only CARBayes-4.3/CARBayes/R/poisson.localisedCARagg.R |only CARBayes-4.3/CARBayes/man/S.CARiar.Rd |only CARBayes-4.3/CARBayes/man/S.independent.Rd |only CARBayes-4.4/CARBayes/DESCRIPTION | 10 CARBayes-4.4/CARBayes/MD5 | 62 - CARBayes-4.4/CARBayes/NAMESPACE | 2 CARBayes-4.4/CARBayes/R/S.CARleroux.R | 50 CARBayes-4.4/CARBayes/R/S.CARlocalised.R | 12 CARBayes-4.4/CARBayes/R/binomial.bymCAR.R | 60 - CARBayes-4.4/CARBayes/R/binomial.dissimilarityCAR.R | 60 - CARBayes-4.4/CARBayes/R/binomial.lerouxCAR.R | 127 +- CARBayes-4.4/CARBayes/R/binomial.localisedCAR.R | 62 - CARBayes-4.4/CARBayes/R/gaussian.dissimilarityCAR.R | 45 CARBayes-4.4/CARBayes/R/gaussian.lerouxCAR.R | 882 ++++++++------- CARBayes-4.4/CARBayes/R/poisson.bymCAR.R | 59 - CARBayes-4.4/CARBayes/R/poisson.dissimilarityCAR.R | 55 CARBayes-4.4/CARBayes/R/poisson.lerouxCAR.R | 1077 +++++++++---------- CARBayes-4.4/CARBayes/R/poisson.localisedCAR.R | 61 - CARBayes-4.4/CARBayes/R/print.carbayes.R | 8 CARBayes-4.4/CARBayes/build/vignette.rds |binary CARBayes-4.4/CARBayes/inst/doc/CARBayesvignette.R | 40 CARBayes-4.4/CARBayes/inst/doc/CARBayesvignette.Rnw | 115 -- CARBayes-4.4/CARBayes/inst/doc/CARBayesvignette.pdf |binary CARBayes-4.4/CARBayes/man/CARBayes-package.Rd | 21 CARBayes-4.4/CARBayes/man/S.CARbym.Rd | 7 CARBayes-4.4/CARBayes/man/S.CARdissimilarity.Rd | 5 CARBayes-4.4/CARBayes/man/S.CARleroux.Rd | 23 CARBayes-4.4/CARBayes/man/S.CARlocalised.Rd | 27 CARBayes-4.4/CARBayes/vignettes/CARBayesvignette.Rnw | 115 -- CARBayes-4.4/CARBayes/vignettes/jss996.bib | 8 37 files changed, 1615 insertions(+), 1378 deletions(-)
Title: Tools for Biometry and Applied Statistics in Agricultural
Science
Description: Tools designed to perform and work with cluster analysis (including Tocher's algorithm),
discriminant analysis and path analysis (standard and under collinearity), as well as some
useful miscellaneous tools for dealing with sample size and optimum plot size calculations.
Mantel's permutation test can be found in this package. A new approach for calculating its
power is implemented. biotools also contains the new tests for genetic covariance components.
Author: Anderson Rodrigo da Silva
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
Diff between biotools versions 2.2 dated 2015-08-08 and 3.0 dated 2016-02-03
DESCRIPTION | 10 +++++----- MD5 | 17 ++++++++++++----- NAMESPACE | 8 ++++++-- NEWS | 7 +++++++ R/sHe-old.R |only R/sHe.R |only data/brazil.rda |only data/moco.rda |only man/biotools-package.Rd | 4 ++-- man/brazil.Rd |only man/moco.Rd |only man/pathanalysis.Rd | 2 +- man/sHe.Rd |only 13 files changed, 33 insertions(+), 15 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
Liang et al hyper-g priors (JASA 2008) or mixtures of
g-priors in GLMS of Li and Clyde 2015. Other model
selection criteria include AIC and BIC. Sampling
probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an MCMC algorithm
samples models using the BAS tree structure as an efficient
hash table. Allows uniform or beta-binomial prior distributions on
models, and may force variables to always be included.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.0.8 dated 2015-11-12 and 1.0.9 dated 2016-02-03
BAS-1.0.8/BAS/INDEX |only BAS-1.0.9/BAS/CHANGELOG | 10 ++- BAS-1.0.9/BAS/DESCRIPTION | 7 -- BAS-1.0.9/BAS/MD5 | 39 ++++++------ BAS-1.0.9/BAS/R/EB.bma.R | 2 BAS-1.0.9/BAS/R/bas.R | 107 ++++++++++++++++++++-------------- BAS-1.0.9/BAS/man/bas.Rd | 6 + BAS-1.0.9/BAS/src/amcmc.c | 72 +++++----------------- BAS-1.0.9/BAS/src/bayesreg.c | 75 +++++++++++++++++++++++ BAS-1.0.9/BAS/src/deterministic.c | 49 ++++++++------- BAS-1.0.9/BAS/src/family.c | 14 ++-- BAS-1.0.9/BAS/src/glm_fit.c | 1 BAS-1.0.9/BAS/src/glm_lpy.c | 19 +++--- BAS-1.0.9/BAS/src/glm_sampleworep.c | 3 BAS-1.0.9/BAS/src/hypergeometric1F1.c | 2 BAS-1.0.9/BAS/src/mcmc.c | 4 - BAS-1.0.9/BAS/src/mcmc_new.c | 57 ++---------------- BAS-1.0.9/BAS/src/mcmcbas.c | 71 +++------------------- BAS-1.0.9/BAS/src/sampleworep.c | 35 ++++++----- BAS-1.0.9/BAS/src/sampleworep_new.c | 10 +-- BAS-1.0.9/BAS/src/sampling.h | 3 21 files changed, 287 insertions(+), 299 deletions(-)
Title: Mapping Global Data
Description: Enables mapping of country level and gridded user datasets.
Author: Andy South
Maintainer: Andy South <southandy@gmail.com>
Diff between rworldmap versions 1.3-1 dated 2013-08-22 and 1.3-6 dated 2016-02-03
rworldmap-1.3-1/rworldmap/ChangeLog |only rworldmap-1.3-1/rworldmap/inst/doc/ChangeLog.txt |only rworldmap-1.3-1/rworldmap/man/barplotCountryData.rd |only rworldmap-1.3-6/rworldmap/DESCRIPTION | 26 rworldmap-1.3-6/rworldmap/MD5 | 174 - rworldmap-1.3-6/rworldmap/NAMESPACE | 69 rworldmap-1.3-6/rworldmap/R/addMapLegend.r | 93 rworldmap-1.3-6/rworldmap/R/addMapLegendBoxes.r | 80 rworldmap-1.3-6/rworldmap/R/aggregateHalfDegreeGridToCountries.R | 54 rworldmap-1.3-6/rworldmap/R/barplotCountryData.r | 95 rworldmap-1.3-6/rworldmap/R/country2Region.R | 78 rworldmap-1.3-6/rworldmap/R/datasets.R |only rworldmap-1.3-6/rworldmap/R/getMap.r | 28 rworldmap-1.3-6/rworldmap/R/identifyCountries.r | 49 rworldmap-1.3-6/rworldmap/R/isoToName.r | 33 rworldmap-1.3-6/rworldmap/R/joinCountryData2Map.R | 74 rworldmap-1.3-6/rworldmap/R/joinData2Map.R | 102 rworldmap-1.3-6/rworldmap/R/labelCountries.r | 41 rworldmap-1.3-6/rworldmap/R/mapBars.r | 211 - rworldmap-1.3-6/rworldmap/R/mapBubbles.r | 91 rworldmap-1.3-6/rworldmap/R/mapByRegion.r | 51 rworldmap-1.3-6/rworldmap/R/mapCountryData.R | 132 - rworldmap-1.3-6/rworldmap/R/mapDevice.r | 52 rworldmap-1.3-6/rworldmap/R/mapGriddedData.r | 83 rworldmap-1.3-6/rworldmap/R/mapHalfDegreeGridToCountries.R | 54 rworldmap-1.3-6/rworldmap/R/mapPies.r | 73 rworldmap-1.3-6/rworldmap/R/mapPolys.R | 118 - rworldmap-1.3-6/rworldmap/R/rwmCheckAndLoadInput.R | 20 rworldmap-1.3-6/rworldmap/R/rwmGetClassBreaks.R | 32 rworldmap-1.3-6/rworldmap/R/rwmGetColours.R | 28 rworldmap-1.3-6/rworldmap/R/rwmGetISO3.r | 27 rworldmap-1.3-6/rworldmap/R/rwmNewMapPlot.r | 22 rworldmap-1.3-6/rworldmap/R/rworldmap-package.R |only rworldmap-1.3-6/rworldmap/R/rworldmapExamples.R | 11 rworldmap-1.3-6/rworldmap/R/setMapExtents.R | 27 rworldmap-1.3-6/rworldmap/README.md |only rworldmap-1.3-6/rworldmap/build |only rworldmap-1.3-6/rworldmap/data/coastsCoarse.rda |binary rworldmap-1.3-6/rworldmap/data/countriesCoarse.rda |binary rworldmap-1.3-6/rworldmap/data/countriesCoarseLessIslands.rda |binary rworldmap-1.3-6/rworldmap/data/countriesLow.rda |binary rworldmap-1.3-6/rworldmap/data/countryExData.rda |binary rworldmap-1.3-6/rworldmap/data/countryRegions.rda |binary rworldmap-1.3-6/rworldmap/data/countrySynonyms.rda |binary rworldmap-1.3-6/rworldmap/data/gridCountriesDegreesHalf.rda |binary rworldmap-1.3-6/rworldmap/data/gridCountriesNumeric.rda |binary rworldmap-1.3-6/rworldmap/data/gridExData.rda |binary rworldmap-1.3-6/rworldmap/inst/doc/rworldmap.R | 8 rworldmap-1.3-6/rworldmap/inst/doc/rworldmap.pdf |binary rworldmap-1.3-6/rworldmap/inst/doc/rworldmap.rnw | 1143 +++++----- rworldmap-1.3-6/rworldmap/inst/doc/rworldmapFAQ.Rnw | 1082 ++++----- rworldmap-1.3-6/rworldmap/inst/doc/rworldmapFAQ.pdf |binary rworldmap-1.3-6/rworldmap/man/addMapLegend.Rd | 146 - rworldmap-1.3-6/rworldmap/man/addMapLegendBoxes.Rd | 121 - rworldmap-1.3-6/rworldmap/man/aggregateHalfDegreeGridToCountries.Rd | 46 rworldmap-1.3-6/rworldmap/man/barplotCountryData.Rd |only rworldmap-1.3-6/rworldmap/man/coastsCoarse.Rd | 28 rworldmap-1.3-6/rworldmap/man/countriesCoarse.Rd | 66 rworldmap-1.3-6/rworldmap/man/countriesCoarseLessIslands.Rd | 62 rworldmap-1.3-6/rworldmap/man/countriesLow.Rd | 61 rworldmap-1.3-6/rworldmap/man/country2Region.Rd | 67 rworldmap-1.3-6/rworldmap/man/countryExData.Rd | 187 - rworldmap-1.3-6/rworldmap/man/countryRegions.Rd | 55 rworldmap-1.3-6/rworldmap/man/countrySynonyms.Rd | 57 rworldmap-1.3-6/rworldmap/man/getMap.Rd | 34 rworldmap-1.3-6/rworldmap/man/gridCountriesDegreesHalf.Rd | 61 rworldmap-1.3-6/rworldmap/man/gridCountriesNumeric.Rd | 64 rworldmap-1.3-6/rworldmap/man/gridExData.Rd | 83 rworldmap-1.3-6/rworldmap/man/identifyCountries.Rd | 90 rworldmap-1.3-6/rworldmap/man/isoToName.Rd | 60 rworldmap-1.3-6/rworldmap/man/joinCountryData2Map.Rd | 107 rworldmap-1.3-6/rworldmap/man/joinData2Map.Rd | 97 rworldmap-1.3-6/rworldmap/man/labelCountries.Rd | 84 rworldmap-1.3-6/rworldmap/man/mapBars.Rd | 180 - rworldmap-1.3-6/rworldmap/man/mapBubbles.Rd | 215 - rworldmap-1.3-6/rworldmap/man/mapByRegion.Rd | 92 rworldmap-1.3-6/rworldmap/man/mapCountryData.Rd | 163 - rworldmap-1.3-6/rworldmap/man/mapDevice.Rd | 85 rworldmap-1.3-6/rworldmap/man/mapGriddedData.Rd | 137 - rworldmap-1.3-6/rworldmap/man/mapHalfDegreeGridToCountries.Rd | 108 rworldmap-1.3-6/rworldmap/man/mapPies.Rd | 122 - rworldmap-1.3-6/rworldmap/man/mapPolys.Rd | 134 - rworldmap-1.3-6/rworldmap/man/rwmCheckAndLoadInput.Rd | 41 rworldmap-1.3-6/rworldmap/man/rwmGetClassBreaks.Rd | 52 rworldmap-1.3-6/rworldmap/man/rwmGetColours.Rd | 44 rworldmap-1.3-6/rworldmap/man/rwmGetISO3.Rd | 44 rworldmap-1.3-6/rworldmap/man/rwmNewMapPlot.Rd | 44 rworldmap-1.3-6/rworldmap/man/rworldmap-package.Rd | 130 - rworldmap-1.3-6/rworldmap/man/rworldmapExamples.Rd | 17 rworldmap-1.3-6/rworldmap/man/setMapExtents.Rd | 43 rworldmap-1.3-6/rworldmap/vignettes/rworldmap.rnw | 1143 +++++----- rworldmap-1.3-6/rworldmap/vignettes/rworldmapFAQ.Rnw | 1082 ++++----- 92 files changed, 5496 insertions(+), 4217 deletions(-)
Title: Interface to the 'Open Tree of Life' API
Description: An interface to the 'Open Tree of Life' API to retrieve
phylogenetic trees, information about studies used to assemble the synthetic
tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The
'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all
named species.
Author: Francois Michonneau [aut, cre],
Joseph Brown [aut],
David Winter [aut]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between rotl versions 0.4.1 dated 2015-07-24 and 0.5.0 dated 2016-02-03
DESCRIPTION | 23 +- MD5 | 120 +++++++------ NAMESPACE | 14 + NEWS.md |only R/api-taxonomy.R | 11 + R/base.R | 14 + R/deduplicate_labels.R |only R/gol.R | 4 R/match_names.R | 1 R/studies-methods.R |only R/studies-utils.R |only R/studies.R | 271 ++++++++++++++++++++----------- R/taxonomy.R | 22 ++ R/tnrs.R | 28 +++ R/tol.R | 28 ++- R/tree_to_labels.R | 6 README.md | 70 +++++--- build/vignette.rds |binary inst/doc/data_mashups.R | 6 inst/doc/data_mashups.Rmd | 50 ++--- inst/doc/data_mashups.html | 37 +--- inst/doc/how-to-use-rotl.R | 26 ++ inst/doc/how-to-use-rotl.Rmd | 100 +++++++++-- inst/doc/how-to-use-rotl.html | 240 ++++++++++++--------------- inst/doc/meta-analysis.R |only inst/doc/meta-analysis.Rmd |only inst/doc/meta-analysis.html |only man/get_study.Rd | 6 man/get_study_meta.Rd | 26 ++ man/get_study_subtree.Rd | 6 man/get_study_tree.Rd | 11 + man/gol_about.Rd | 8 man/gol_node_info.Rd | 4 man/list_trees.Rd |only man/match_names-methods.Rd | 2 man/match_names.Rd | 4 man/rotl.Rd | 2 man/strip_ott_ids.Rd |only man/studies_find_studies.Rd | 49 ++++- man/studies_find_trees.Rd | 55 +++++- man/studies_properties.Rd | 11 - man/study_list.Rd | 4 man/synonyms.match_names.Rd | 2 man/taxonomy-methods.Rd | 2 man/taxonomy_about.Rd | 2 man/taxonomy_lica.Rd | 2 man/taxonomy_subtree.Rd | 2 man/taxonomy_taxon.Rd | 13 + man/tnrs_contexts.Rd | 2 man/tnrs_infer_context.Rd | 2 man/tnrs_match_names.Rd | 2 man/tol_about.Rd | 6 man/tol_induced_subtree.Rd | 8 man/tol_mrca.Rd | 2 man/tol_subtree.Rd | 4 tests/testthat/test-api-taxonomy.R | 20 ++ tests/testthat/test-base.R | 4 tests/testthat/test-deduplicate_labels.R |only tests/testthat/test-match_names.R | 61 +++--- tests/testthat/test-studies.R | 232 ++++++++++++++++++++++++-- tests/testthat/test-taxonomy.R | 32 +++ tests/testthat/test-tnrs.R | 20 ++ tests/testthat/test-tol.R | 17 + vignettes/data_mashups.Rmd | 50 ++--- vignettes/how-to-use-rotl.Rmd | 100 +++++++++-- vignettes/meta-analysis.Rmd |only vignettes/vignette.css |only 67 files changed, 1255 insertions(+), 589 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.31 dated 2015-11-29 and 1.32 dated 2016-02-03
DESCRIPTION | 8 - MD5 | 18 +- NEWS | 4 R/EZR.R | 338 +++++++++++++++++++++++++++++++++++++++++++++++------ inst/CHANGES | 4 inst/doc/EZR.htm | 4 inst/doc/EZR.pdf |binary man/EZR.Rd | 6 man/Mantel.Byar.Rd | 7 - man/w.multi.Rd | 4 10 files changed, 337 insertions(+), 56 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Scale Bar, North Arrow, and Pretty Margins in R
Description: Automates the process of creating a scale bar and north arrow in
any package that uses base graphics to plot in R. Bounding box tools help find and manipulate
extents. Finally, there is a function to automate the process of setting margins, plotting
the map, scale bar, and north arrow, and resetting graphic parameters upon completion.
Author: Dewey Dunnington <dewey@fishandwhistle.net>
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between prettymapr versions 0.1.3 dated 2015-12-07 and 0.1.4 dated 2016-02-03
DESCRIPTION | 12 - MD5 | 21 - NAMESPACE | 1 R/bboxtools.R | 45 ++-- R/geocode.R | 515 +++++++++++++++++----------------------------- R/prettymap.R | 11 R/scalebar.R | 2 man/geocode.Rd |only man/prettymap.Rd | 6 man/prettymapr-package.Rd | 2 man/searchbbox.Rd | 20 + man/zoombbox.Rd | 2 12 files changed, 276 insertions(+), 361 deletions(-)
Title: GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Description: GEE solver for correlated nominal or ordinal multinomial responses using a local odds ratios parameterization.
Author: Anestis Touloumis <A.Touloumis@brighton.ac.uk>
Maintainer: Anestis Touloumis <A.Touloumis@brighton.ac.uk>
Diff between multgee versions 1.5.2 dated 2015-09-08 and 1.5.3 dated 2016-02-03
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/vignette.rds |binary inst/NEWS | 3 +++ inst/doc/multgee.R | 6 +++--- inst/doc/multgee.Rnw | 33 +++++++-------------------------- inst/doc/multgee.pdf |binary vignettes/multgee.Rnw | 33 +++++++-------------------------- 8 files changed, 31 insertions(+), 66 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre],
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-2 dated 2016-01-19 and 1.4-3 dated 2016-02-03
DESCRIPTION | 8 - MD5 | 26 ++--- inst/NEWS | 4 inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary tests/Examples/multcomp-Ex.Rout.save | 140 ++++++++++++++--------------- tests/bugfix.Rout.save | 18 ++- tests/regtest-Tukey.Rout.save | 18 ++- tests/regtest-anova.Rout.save | 14 ++ tests/regtest-interface-extended.Rout.save | 6 - tests/regtest-interface.Rout.save | 20 ++-- tests/regtest-lme.Rout.save | 14 ++ tests/regtest-mmm.Rout.save | 18 ++- 14 files changed, 170 insertions(+), 116 deletions(-)
Title: Check, Install and Load CRAN & USGS GRAN Packages
Description: Checks the local R library(ies) to see if the required
package(s) is/are installed or not. If the package(s) is/are
not installed, then the package(s) will be installed along with
the required dependency(ies). This function pulls source or
binary packages from the Revolution Analytics CRAN mirror and/or
the USGS GRAN Repository. Lastly, the chosen package(s)
is/are loaded.
Author: Original install_load function written by maloneypatr as a contribution
to Stack Overflow on February 28 2014 (http://stackoverflow.com/questions/
15155814/check-if-r-package-is-installed-then-load-library). Irucka Embry has
revised the original function.
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between install.load versions 1.0.3 dated 2015-05-11 and 1.0.4 dated 2016-02-03
install.load-1.0.3/install.load/NEWS |only install.load-1.0.3/install.load/man/install_lo.Rd |only install.load-1.0.4/install.load/DESCRIPTION | 32 ++++++---- install.load-1.0.4/install.load/MD5 | 12 ++-- install.load-1.0.4/install.load/NAMESPACE | 4 - install.load-1.0.4/install.load/NEWS.md |only install.load-1.0.4/install.load/R/install_load.R | 59 +++++++++++++------- install.load-1.0.4/install.load/README.md | 14 +++- install.load-1.0.4/install.load/man/install_load.Rd |only 9 files changed, 76 insertions(+), 45 deletions(-)
Title: Plot 2D and 3D Views of the Earth, Including Major Coastline
Description: Basic functions for plotting 2D and 3D views of a sphere, by default the Earth with its major coastline, and additional lines and points.
Author: Adrian Baddeley [aut, cre],
Thomas Lawrence [aut]
Maintainer: Adrian Baddeley <adrian.baddeley@curtin.edu.au>
Diff between globe versions 1.1-1 dated 2016-01-14 and 1.1-2 dated 2016-02-03
DESCRIPTION | 8 +-- MD5 | 12 ++--- R/ajbplot.R | 118 +++++++++++++++++++++++++++++++++--------------------- man/flatearth.Rd | 26 ++++++++--- man/flatpoints.Rd | 10 ++++ man/globeearth.Rd | 13 +++++ man/globelines.Rd | 89 ++++++++++++++++++++++++++-------------- 7 files changed, 180 insertions(+), 96 deletions(-)
Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown") objects in R expressions by code
inspection using various strategies, e.g. conservative or liberal. The objective
of this package is to make it as simple as possible to identify global objects
for the purpose of exporting them in distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.6.0 dated 2015-12-12 and 0.6.1 dated 2016-02-03
DESCRIPTION | 6 - MD5 | 24 +++---- NAMESPACE | 34 +++++----- NEWS | 10 ++- R/findGlobals.R | 4 - R/globalsOf.R | 2 R/utils.R | 48 ++++++++++++++ man/Globals.Rd | 56 ++++++++-------- man/cleanup.Globals.Rd | 40 ++++++------ man/globalsOf.Rd | 152 +++++++++++++++++++++++----------------------- man/packagesOf.Globals.Rd | 42 ++++++------ tests/globalsOf.R | 22 +++++- tests/utils.R | 52 +++++++++++++++ 13 files changed, 309 insertions(+), 183 deletions(-)