Title: Sensitivity Analysis for Causal Inference
Description: Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.
Author: Nicole Bohme Carnegie [aut, cre],
Masataka Harada [aut],
Vincent Dorie [aut],
Jennifer Hill [ctb]
Maintainer: Nicole Bohme Carnegie <carnegin@uwm.edu>
Diff between treatSens versions 2.0 dated 2015-07-14 and 2.0.1 dated 2016-02-04
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/calc_range.R | 2 +- R/grid_range.R | 4 ++-- src/Makevars.in | 2 +- src/Makevars.win | 2 +- src/bartTreatmentModel.cpp | 2 ++ src/probitEMTreatmentModel.cpp | 2 ++ src/probitTreatmentModel.cpp | 2 ++ 9 files changed, 23 insertions(+), 17 deletions(-)
Title: Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by
Substantive Model Compatible Fully Conditional Specification.
This is a modification of the popular FCS/chained equations
multiple imputation approach, and allows imputation of missing
covariate values from models which are compatible with the user
specified substantive model.
Author: Jonathan Bartlett [aut, cre]
Maintainer: Jonathan Bartlett <jwb133@googlemail.com>
Diff between smcfcs versions 1.2.0 dated 2016-01-30 and 1.2.1 dated 2016-02-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/smcfcs.r | 6 ++++-- 3 files changed, 9 insertions(+), 7 deletions(-)
Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang <zwang@connecticutchildrens.org>
Diff between mpath versions 0.1-20 dated 2015-11-22 and 0.2-1 dated 2016-02-04
mpath-0.1-20/mpath/R/vuong.R |only mpath-0.1-20/mpath/man/vuong.Rd |only mpath-0.2-1/mpath/DESCRIPTION | 9 - mpath-0.2-1/mpath/MD5 | 36 ++--- mpath-0.2-1/mpath/NAMESPACE | 5 mpath-0.2-1/mpath/NEWS | 10 + mpath-0.2-1/mpath/R/cv.glmreg.R | 169 +++++++++++++-------------- mpath-0.2-1/mpath/R/cv.glmregNegbin.R | 14 -- mpath-0.2-1/mpath/R/cv.zipath.R | 78 ++++++------ mpath-0.2-1/mpath/R/glmreg.R | 3 mpath-0.2-1/mpath/R/predict.glmreg.R | 2 mpath-0.2-1/mpath/build/vignette.rds |binary mpath-0.2-1/mpath/inst/doc/german.R | 6 mpath-0.2-1/mpath/inst/doc/german.Rnw | 12 - mpath-0.2-1/mpath/inst/doc/german.pdf |binary mpath-0.2-1/mpath/inst/doc/static_german.pdf |binary mpath-0.2-1/mpath/man/cv.glmregNB.Rd | 5 mpath-0.2-1/mpath/man/cv.glmreg_fit.Rd | 6 mpath-0.2-1/mpath/man/cv.zipath.Rd | 5 mpath-0.2-1/mpath/vignettes/german.Rnw | 12 - 20 files changed, 189 insertions(+), 183 deletions(-)
Title: European Commission Annual Macro-Economic (AMECO) Database
Description: Annual macro-economic database provided by the European Commission.
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>
Diff between ameco versions 0.2 dated 2016-01-19 and 0.2.2 dated 2016-02-04
DESCRIPTION | 8 - MD5 | 28 ++-- NAMESPACE | 4 R/data.R | 42 +++--- README.md | 176 +++++++++++++++------------- build/vignette.rds |binary data/ameco.RData |binary data/datalist | 2 inst/doc/ameco_dataset.R | 46 +++---- inst/doc/ameco_dataset.Rmd | 122 +++++++++---------- inst/doc/ameco_dataset.html | 270 ++++++++++++++++++++++---------------------- man/ameco.Rd | 60 ++++----- tests/testthat.R | 8 - tests/testthat/tests.R | 24 +-- vignettes/ameco_dataset.Rmd | 122 +++++++++---------- 15 files changed, 465 insertions(+), 447 deletions(-)
Title: Run Code 'With' Temporarily Modified Global State
Description: A set of functions to run code 'with' safely and temporarily
modified global state. Many of these functions were originally a part of the
'devtools' package, this provides a simple package with limited dependencies
to provide access to these functions.
Author: Jim Hester [aut, cre],
Kirill Müller [aut],
Hadley Wickham [aut],
Winston Chang [aut],
RStudio [cph]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between withr versions 1.0.0 dated 2015-09-22 and 1.0.1 dated 2016-02-04
DESCRIPTION | 14 ++++++++------ MD5 | 37 +++++++++++++++++++++---------------- NAMESPACE | 4 +++- NEWS.md |only R/sink.R |only R/with.R | 3 ++- R/wrap.R |only man/with_.Rd | 2 +- man/with_collate.Rd | 2 +- man/with_dir.Rd | 2 +- man/with_envvar.Rd | 2 +- man/with_libpaths.Rd | 2 +- man/with_locale.Rd | 2 +- man/with_makevars.Rd | 2 +- man/with_options.Rd | 2 +- man/with_par.Rd | 2 +- man/with_path.Rd | 2 +- man/with_sink.Rd |only man/with_temp_libpaths.Rd | 2 +- man/withr.Rd | 5 +++-- tests/testthat/test-sink.R |only tests/testthat/test-with.R | 5 ++++- 22 files changed, 52 insertions(+), 38 deletions(-)
Title: Handling of Swedish Identity Numbers
Description: Structural handling of identity numbers used in the Swedish
administration such as personal identity numbers ('personnummer') and
organizational identity numbers ('organisationsnummer').
Author: Mans Magnusson and Erik Bulow
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between sweidnumbr versions 1.0.0 dated 2015-12-23 and 1.1.0 dated 2016-02-04
DESCRIPTION | 12 ++--- MD5 | 49 ++++++++++----------- R/create_s3_methods.R | 2 R/firstlib.R | 2 R/luhn_algo.R |only R/oin.R | 22 ++++++--- R/oin_internal.R | 2 R/oin_methods.R | 1 R/pin.R | 16 +++++- R/pin_internal.R | 94 +++-------------------------------------- man/create_s3_method.Rd | 1 man/luhn_algo.Rd | 4 - man/oin_ctrl.Rd | 6 +- man/oin_group.Rd | 2 man/oin_group_element.Rd | 1 man/pin_birthplace_internal.Rd | 1 man/pin_century.Rd | 1 man/pin_convert.Rd | 1 man/pin_coordn_correct.Rd | 1 man/pin_ctrl.Rd | 4 + tests/testthat/test-as.oin.R | 9 ++- tests/testthat/test-as.pin.R | 4 + tests/testthat/test-oin_ctrl.R | 20 ++++++++ tests/testthat/test-pin_ctrl.R | 14 ++++++ vignettes/sweidnumbr.Rmd | 19 +++----- vignettes/sweidnumbr.md | 30 +++++++------ 26 files changed, 157 insertions(+), 161 deletions(-)
Title: Spatial Exposure-Hazard Model for Exposure and Impact Assessment
on Exposed Individuals
Description: A model coupling polygon and point processes for assessing
risk due to contaminant sources and their impact on exposed individuals.
Author: Emily Walker [aut],
Jean-Francois Rey [aut, cre],
Melen Leclerc [aut],
Samuel Soubeyrand [ctb],
Marc Bourotte [ctb]
Maintainer: Jean-Francois Rey <jean-francois.rey@paca.inra.fr>
Diff between SEHmodel versions 0.0.10 dated 2015-11-19 and 0.0.11 dated 2016-02-04
DESCRIPTION | 21 ++-- MD5 | 82 +++++++++-------- NAMESPACE | 3 R/Class-Individuals.R | 16 +-- R/Class-Landscape.R | 12 +- R/Individuals-Methods.R | 74 ++++++++------- R/Landscape-Individuals-Methods.R | 22 ++-- R/Landscape-Methods.R | 126 ++++++++++++++------------- R/SEHmodel-package.R | 13 +- R/demo.R | 7 - R/ecoToxic.R | 59 +++++++----- R/pollen-data.R | 9 + R/toxicIntensity.R | 113 ++++++++++++++---------- data/maize_65.rda |only man/Individuals-class.Rd | 18 +-- man/Individuals-get-methods.Rd | 14 +-- man/Individuals-getIndividualsLife-method.Rd | 16 +-- man/Individuals-plot-methods.Rd | 15 +-- man/Individuals-print-class.Rd | 6 - man/Individuals-show-method.Rd | 9 - man/Landscape-Individuals-plot-method.Rd | 14 +-- man/Landscape-class.Rd | 14 +-- man/Landscape-constructor-class.Rd | 25 ++--- man/Landscape-getSPSources-method.Rd | 14 ++- man/Landscape-load-class.Rd | 15 ++- man/Landscape-load-sig-class.Rd | 7 + man/Landscape-plot-method.Rd | 9 + man/Landscape-print-method.Rd | 8 - man/Landscape-save-tiff.Rd | 14 +-- man/Landscape-show-method.Rd | 6 - man/Landscape-simulateThickMargins-method.Rd | 24 ++--- man/Landscape-toxicIntensity-method.Rd | 34 ++++--- man/Precipitation.Rd | 2 man/SEHmodel-package.Rd | 18 ++- man/create.pollen.sources.Rd | 11 +- man/demo.pollen.run.Rd | 9 + man/ecoToxic.Rd | 18 +-- man/load-Individuals-class.Rd | 20 +++- man/maize_65.Rd |only man/plotEcotoxic.Rd | 10 +- man/plotLandscapetoxicIntensity.Rd | 6 - man/simulateIndividuals-constructor-class.Rd | 12 +- man/simulateLandscape-constructor-class.Rd | 38 ++++---- 43 files changed, 534 insertions(+), 429 deletions(-)
Title: Local Fisher Discriminant Analysis
Description: Functions for performing and visualizing Local Fisher Discriminant Analysis(LFDA), Kernel Fisher Discriminant Analysis(KLFDA), and Semi-supervised Local Fisher Discriminant Analysis(SELF).
Author: Yuan Tang <terrytangyuan@gmail.com> and Zachary Deane-Mayer with contributions from Nan Xiao.
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between lfda versions 1.1.0 dated 2015-08-18 and 1.1.1 dated 2016-02-04
DESCRIPTION | 14 - LICENSE | 4 MD5 | 58 ++--- NAMESPACE | 37 +-- R/aaa.R | 6 R/helpers.R | 153 ++++++------- R/klfda.R | 258 +++++++++++------------ R/kmatrixGauss.R | 102 ++++----- R/lfda.R | 370 ++++++++++++++++----------------- R/lfda_visualization.R | 144 ++++++------ R/self.R | 254 +++++++++++----------- README.md | 176 ++++++++++----- man/Cols.Rd | 36 +-- man/getAffinityMatrix.Rd | 44 +-- man/getMetricOfType.Rd | 48 ++-- man/grapes-pow-grapes.Rd | 42 +-- man/klfda.Rd | 188 ++++++++-------- man/kmatrixGauss.Rd | 114 +++++----- man/lfda.Rd | 194 ++++++++--------- man/plot.lfda.Rd | 48 ++-- man/predict.lfda.Rd | 56 ++-- man/print.lfda.Rd | 34 +-- man/repmat.Rd | 46 ++-- man/self.Rd | 160 +++++++------- tests/testthat.R | 8 tests/testthat/test_helper_functions.R | 38 +-- tests/testthat/test_klfda.R | 24 +- tests/testthat/test_lfda.R | 44 ++- tests/testthat/test_self.R | 52 ++-- tests/testthat/test_visualization.R | 98 ++++---- 30 files changed, 1461 insertions(+), 1389 deletions(-)
Title: Identifying Functional Polymorphisms
Description: A suite for identifying causal models using relative concordances and identifying causal polymorphisms in case-control genetic association data, especially with large controls re-sequenced data.
Author: Leeyoung Park
Maintainer: Leeyoung Park <lypark@yonsei.ac.kr>
Diff between IFP versions 0.2.0 dated 2015-06-11 and 0.2.1 dated 2016-02-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NAMESPACE | 4 ++++ src/lrtG.cpp | 5 ++--- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Statistical Functions for the Censored and Uncensored
Epanechnikov Distribution
Description: Analyzing censored variables usually requires the use of optimization algorithms. This package provides an alternative algebraic approach to the task of determining the expected value of a random censored variable with a known censoring point. Likewise this approach allows for the determination of the censoring point if the expected value is known. These results are derived under the assumption that the variable follows an Epanechnikov kernel distribution with known mean and range prior to censoring. Statistical functions related to the uncensored Epanechnikov distribution are also provided by this package.
Author: Mathias Borritz Milfeldt [aut, cre]
Maintainer: Mathias Borritz Milfeldt <mathias@milfeldt.dk>
Diff between epandist versions 1.1.0 dated 2016-02-02 and 1.1.1 dated 2016-02-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/cepan.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Super Learner Prediction
Description: Implements the super learner prediction method and contains a library of prediction algorithms to be used in the super learner.
Author: Eric Polley, Erin LeDell, Mark van der Laan
Maintainer: Eric Polley <polley.eric@mayo.edu>
Diff between SuperLearner versions 2.0-15 dated 2014-07-21 and 2.0-19 dated 2016-02-04
DESCRIPTION | 19 ++++---- MD5 | 84 ++++++++++++++++++++------------------- NAMESPACE | 32 ++++++++++++++ R/CV.SuperLearner.R | 4 - R/SL.bayesglm.R | 2 R/SL.caret.R | 2 R/SL.cforest.R | 2 R/SL.gbm.R | 6 +- R/SL.glmnet.R | 2 R/SL.ipredbagg.R | 6 +- R/SL.knn.R | 4 - R/SL.leekasso.R | 2 R/SL.logreg.R | 8 +-- R/SL.nnet.R | 4 - R/SL.nnls.R |only R/SL.polymars.R | 8 +-- R/SL.randomForest.R | 4 - R/SL.ridge.R | 2 R/SL.rpart.R | 4 - R/SL.rpartPrune.R | 8 +-- R/SL.step.R | 2 R/SL.svm.R | 7 +-- R/SampleSplitSuperLearner.R | 34 ++++++++++++++- R/SuperLearner.R | 2 R/mcSuperLearner.R | 6 +- R/method.R | 35 +++++++++------- R/plot.CV.SuperLearner.R | 8 +-- R/predict.SuperLearner.R | 3 + R/recombine.R |only R/screen.SIS.R | 4 - R/screen.glmnet.R | 2 R/screen.randomForest.R | 4 - R/screen.ttest.R | 2 R/snowSuperLearner.R | 8 +-- R/summary.CV.SuperLearner.R | 14 +++--- R/zzz.R | 2 build/vignette.rds |binary inst/NEWS | 28 ++++++++++++- inst/doc/SuperLearnerPresent.pdf |binary man/CV.SuperLearner.Rd | 4 - man/CVFolds.Rd | 2 man/SuperLearner.Rd | 2 man/recombineCVSL.Rd |only man/recombineSL.Rd |only man/write.SL.template.Rd | 2 45 files changed, 238 insertions(+), 136 deletions(-)
Title: Simulation of Dynamic Microbial Inactivation
Description: Prediction and adjustment to experimental data of microbial
inactivation. Several models available in the literature are implemented.
Author: Alberto Garre [aut, cre],
Pablo S. Fernandez [aut],
Jose A. Egea [aut]
Maintainer: Alberto Garre <garre.alberto@gmail.com>
Diff between bioinactivation versions 1.0.1 dated 2015-12-11 and 1.1.1 dated 2016-02-04
bioinactivation-1.0.1/bioinactivation/R/methods_s3.R |only bioinactivation-1.1.1/bioinactivation/DESCRIPTION | 27 bioinactivation-1.1.1/bioinactivation/MD5 | 70 +- bioinactivation-1.1.1/bioinactivation/NAMESPACE | 21 bioinactivation-1.1.1/bioinactivation/R/doc_examples.R | 38 + bioinactivation-1.1.1/bioinactivation/R/dynamic_fit.R | 29 bioinactivation-1.1.1/bioinactivation/R/fit_MCMC.R | 31 bioinactivation-1.1.1/bioinactivation/R/geeraerd_model.R | 4 bioinactivation-1.1.1/bioinactivation/R/isothermal_fit.R | 8 bioinactivation-1.1.1/bioinactivation/R/make_predictions.R | 40 - bioinactivation-1.1.1/bioinactivation/R/methods_s3_others.R |only bioinactivation-1.1.1/bioinactivation/R/methods_s3_plot.R |only bioinactivation-1.1.1/bioinactivation/R/predict_MCMC.R |only bioinactivation-1.1.1/bioinactivation/README.md | 14 bioinactivation-1.1.1/bioinactivation/data/laterosporus_dyna.rda |only bioinactivation-1.1.1/bioinactivation/data/laterosporus_iso.rda |only bioinactivation-1.1.1/bioinactivation/inst/doc/inactivation.R | 148 +++- bioinactivation-1.1.1/bioinactivation/inst/doc/inactivation.Rmd | 332 ++++++++-- bioinactivation-1.1.1/bioinactivation/inst/doc/inactivation.html | 328 +++++++-- bioinactivation-1.1.1/bioinactivation/man/dGeeraerd_model.Rd | 4 bioinactivation-1.1.1/bioinactivation/man/dynamic_inactivation.Rd | 1 bioinactivation-1.1.1/bioinactivation/man/fit_dynamic_inactivation.Rd | 24 bioinactivation-1.1.1/bioinactivation/man/fit_inactivation_MCMC.Rd | 27 bioinactivation-1.1.1/bioinactivation/man/fit_isothermal_inactivation.Rd | 16 bioinactivation-1.1.1/bioinactivation/man/is.FitInactivation.Rd |only bioinactivation-1.1.1/bioinactivation/man/is.FitInactivationMCMC.Rd |only bioinactivation-1.1.1/bioinactivation/man/is.IsoFitInactivation.Rd |only bioinactivation-1.1.1/bioinactivation/man/is.PredInactivationMCMC.Rd |only bioinactivation-1.1.1/bioinactivation/man/is.SimulInactivation.Rd | 4 bioinactivation-1.1.1/bioinactivation/man/laterosporus_dyna.Rd |only bioinactivation-1.1.1/bioinactivation/man/laterosporus_iso.Rd |only bioinactivation-1.1.1/bioinactivation/man/plot.FitInactivation.Rd | 16 bioinactivation-1.1.1/bioinactivation/man/plot.FitInactivationMCMC.Rd | 16 bioinactivation-1.1.1/bioinactivation/man/plot.IsoFitInactivation.Rd | 6 bioinactivation-1.1.1/bioinactivation/man/plot.PredInactivationMCMC.Rd |only bioinactivation-1.1.1/bioinactivation/man/plot.SimulInactivation.Rd | 16 bioinactivation-1.1.1/bioinactivation/man/predict_inactivation.Rd | 38 - bioinactivation-1.1.1/bioinactivation/man/predict_inactivation_MCMC.Rd |only bioinactivation-1.1.1/bioinactivation/man/sample_IsoFit.Rd |only bioinactivation-1.1.1/bioinactivation/man/sample_MCMCfit.Rd |only bioinactivation-1.1.1/bioinactivation/man/sample_dynaFit.Rd |only bioinactivation-1.1.1/bioinactivation/man/summary.FitInactivation.Rd |only bioinactivation-1.1.1/bioinactivation/man/summary.FitInactivationMCMC.Rd |only bioinactivation-1.1.1/bioinactivation/man/summary.IsoFitInactivation.Rd |only bioinactivation-1.1.1/bioinactivation/tests/testthat.R | 9 bioinactivation-1.1.1/bioinactivation/vignettes/inactivation.Rmd | 332 ++++++++-- 46 files changed, 1227 insertions(+), 372 deletions(-)
More information about bioinactivation at CRAN
Permanent link
Title: Access to Abbyy Optical Character Recognition (OCR) API
Description: Get text from images of text using Abbyy Cloud Optical Character
Recognition (OCR) API. Easily OCR images, barcodes, forms, documents with
machine readable zones, e.g. passports. Get the results in a variety of formats
including plain text and XML. To learn more about the Abbyy OCR API, see http://
ocrsdk.com/.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between abbyyR versions 0.2.3 dated 2015-12-06 and 0.3 dated 2016-02-04
DESCRIPTION | 6 ++--- LICENSE | 2 - MD5 | 40 ++++++++++++++++++------------------ NEWS | 7 ++++++ R/abbyyR.R | 4 +-- R/compareText.R | 6 ++--- R/getResults.R | 42 ++++++++++++++++++++++++++------------ R/processBarcodeField.R | 9 ++------ R/processBusinessCard.R | 8 ++----- R/processCheckmarkField.R | 9 +++----- R/processDocument.R | 8 ++----- R/processFields.R | 10 ++++----- R/processMRZ.R | 13 +++++------ R/processPhotoId.R | 1 R/processTextField.R | 8 ++----- build/vignette.rds |binary inst/doc/example.html | 4 +-- inst/doc/overview.html | 4 +-- inst/doc/wiscads.html | 4 +-- man/getResults.Rd | 9 +++++++- tests/testthat/test-get-results.R | 2 - 21 files changed, 108 insertions(+), 88 deletions(-)
Title: Tumor Growth Rate Analysis
Description: A tool to obtain tumor growth rates from clinical trial patient data. Output includes individual and summary data for tumor growth rate estimates as well as optional plots of the observed and predicted tumor quantity over time.
Author: Julia Wilkerson
Maintainer: Julia Wilkerson <jmwilkers@outlook.com>
Diff between tumgr versions 0.0.3 dated 2015-08-06 and 0.0.4 dated 2016-02-04
DESCRIPTION | 10 +++++----- LICENSE | 2 +- MD5 | 10 +++++----- NEWS | 6 ++++++ man/gdrate.Rd | 15 ++++----------- man/sampleData.Rd | 5 +---- 6 files changed, 22 insertions(+), 26 deletions(-)
Title: Analysis of Parent-Specific DNA Copy Numbers
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between PSCBS versions 0.60.0 dated 2015-11-18 and 0.61.0 dated 2016-02-04
DESCRIPTION | 18 +-- MD5 | 45 ++++---- NAMESPACE | 5 NEWS | 14 ++ R/PairedPSCBS.BOOT.R | 75 +++++++++----- R/PairedPSCBS.BOOT.sets.R | 65 ++++++++---- R/PairedPSCBS.EXTS.R | 11 +- R/PairedPSCBS.PLOT,many.R | 3 R/PairedPSCBS.PLOT.R | 23 +++- R/PairedPSCBS.PLOT2.R | 21 +++- R/PairedPSCBS.R | 2 R/randomSeed.R | 14 ++ R/segmentByCBS.R | 57 +++++++---- R/segmentByPairedPSCBS.R | 178 ++++++++++++++++++++++------------- R/weightedQuantile.R | 2 build/vignette.rds |binary inst/doc/CBS.pdf |binary inst/doc/PairedPSCBS.pdf |binary man/randomSeed.Rd | 5 man/segmentByPairedPSCBS.Rd | 13 +- tests/randomSeed.R | 12 ++ tests/segmentByCBS,futures.R | 9 - tests/segmentByPairedPSCBS,DH.R |only tests/segmentByPairedPSCBS,futures.R | 33 ++++-- 24 files changed, 398 insertions(+), 207 deletions(-)
More information about PortfolioEffectEstim at CRAN
Permanent link
Title: L-Moments and Quantile Mixtures
Description: Contains functions to estimate
L-moments and trimmed L-moments from the data. Also
contains functions to estimate the parameters of the normal
polynomial quantile mixture and the Cauchy polynomial quantile
mixture from L-moments and trimmed L-moments.
Author: Juha Karvanen
Maintainer: Juha Karvanen <juha.karvanen@iki.fi>
Diff between Lmoments versions 1.1-6 dated 2014-11-29 and 1.2-2 dated 2016-02-04
DESCRIPTION | 17 ++-- MD5 | 12 +-- NAMESPACE | 2 R/Lmoments.R | 216 +++++++++++++++++++++++++++++--------------------------- inst/CITATION | 26 +++--- inst/News | 7 + man/Lmoments.Rd | 4 + 7 files changed, 155 insertions(+), 129 deletions(-)
Title: Kantorovich Distance Between Probability Measures
Description: Computes the Kantorovich distance between two probability measures on a finite set.
Author: Stéphane Laurent
Maintainer: Stéphane Laurent <laurent_step@yahoo.fr>
Diff between kantorovich versions 1.0.0 dated 2016-01-15 and 1.1.0 dated 2016-02-04
DESCRIPTION | 8 ++--- MD5 | 22 +++++++------- R/kantorovich.R | 56 +++++++++++++++++++++++++------------- inst/doc/kantorovich.R | 6 +++- inst/doc/kantorovich.Rmd | 11 ++++++- inst/doc/kantorovich.html | 13 +++++--- man/edistances.Rd | 11 ++++--- man/ejoinings.Rd | 8 ++--- man/kantorovich-package.Rd | 4 +- man/kantorovich.Rd | 22 ++++++++++---- tests/testthat/test-kantorovich.R | 51 ++++++++++++++++++++++++++++++++++ vignettes/kantorovich.Rmd | 11 ++++++- 12 files changed, 162 insertions(+), 61 deletions(-)
Title: Direct, Chain and Average Equating Coefficients with Standard
Errors Using IRT Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with standard errors using Item Response Theory (IRT) methods for dichotomous items.
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateIRT versions 1.2-2 dated 2015-12-18 and 1.2-3 dated 2016-02-04
DESCRIPTION | 10 +++--- MD5 | 16 +++++----- NAMESPACE | 3 + R/functions.r | 72 ++++++++++++++++++++++------------------------- inst/NEWS | 9 +---- inst/doc/equateIRT.pdf |binary man/equateIRT-package.Rd | 4 +- man/import.ltm.Rd | 20 +++++-------- man/modIRT.Rd | 3 - 9 files changed, 65 insertions(+), 72 deletions(-)
Title: Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Fluorescence Data
Description: Provides various tools to calculate EEM fluorescence metrics and preprocess EEM for PARAFAC analysis.
Author: Philippe Massicotte [aut, cre]
Maintainer: Philippe Massicotte <pm@bios.au.dk>
Diff between eemR versions 0.1.1 dated 2015-11-24 and 0.1.2 dated 2016-02-04
eemR-0.1.1/eemR/R/RcppExports.R |only eemR-0.1.1/eemR/R/tags.R |only eemR-0.1.1/eemR/man/read_lines.Rd |only eemR-0.1.1/eemR/src |only eemR-0.1.2/eemR/DESCRIPTION | 16 eemR-0.1.2/eemR/MD5 | 65 - eemR-0.1.2/eemR/NAMESPACE | 58 - eemR-0.1.2/eemR/NEWS.md |only eemR-0.1.2/eemR/R/absorbance.R | 56 - eemR-0.1.2/eemR/R/eem_correction.R | 901 ++++++++++++------------- eemR-0.1.2/eemR/R/eem_export.R | 241 +++--- eemR-0.1.2/eemR/R/eem_metrics.R | 520 +++++++------- eemR-0.1.2/eemR/R/eem_read.R | 480 ++++++------- eemR-0.1.2/eemR/R/eem_utils.R | 743 ++++++++++++-------- eemR-0.1.2/eemR/README.md | 686 +++++++++---------- eemR-0.1.2/eemR/man/absorbance.Rd | 64 - eemR-0.1.2/eemR/man/eem.Rd | 60 - eemR-0.1.2/eemR/man/eem_bind.Rd |only eemR-0.1.2/eemR/man/eem_biological_index.Rd | 100 +- eemR-0.1.2/eemR/man/eem_coble_peaks.Rd | 103 +- eemR-0.1.2/eemR/man/eem_cut.Rd | 66 - eemR-0.1.2/eemR/man/eem_export_matlab.Rd | 78 +- eemR-0.1.2/eemR/man/eem_extract.Rd | 105 +- eemR-0.1.2/eemR/man/eem_fluorescence_index.Rd | 84 +- eemR-0.1.2/eemR/man/eem_humification_index.Rd | 108 +- eemR-0.1.2/eemR/man/eem_inner_filter_effect.Rd | 148 ++-- eemR-0.1.2/eemR/man/eem_raman_normalisation.Rd | 120 +-- eemR-0.1.2/eemR/man/eem_read.Rd | 82 +- eemR-0.1.2/eemR/man/eem_remove_blank.Rd | 140 +-- eemR-0.1.2/eemR/man/eem_remove_scattering.Rd | 96 +- eemR-0.1.2/eemR/man/eem_sample_names-set.Rd |only eemR-0.1.2/eemR/man/eem_sample_names.Rd |only eemR-0.1.2/eemR/man/eem_set_wavelengths.Rd | 68 - eemR-0.1.2/eemR/man/plot.eem.Rd | 46 - eemR-0.1.2/eemR/man/plot.eemlist.Rd | 50 - eemR-0.1.2/eemR/man/summary.eem.Rd | 52 - eemR-0.1.2/eemR/man/summary.eemlist.Rd | 46 - 37 files changed, 2797 insertions(+), 2585 deletions(-)
Title: Easy Visualization of ABH Genotypes
Description: Easy to use functions to visualize marker data
from biparental populations. Useful for both analyzing and
presenting genotypes in the ABH format.
Author: Stefan Reuscher [aut, cre],
Tomoyuki Furuta [aut]
Maintainer: Stefan Reuscher <reuscher.stefan@gmail.com>
Diff between ABHgenotypeR versions 1.0.0 dated 2016-01-21 and 1.0.1 dated 2016-02-04
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- NEWS.md |only R/correctStretches.R | 2 +- R/correctUndercalledHets.R | 2 +- R/imputeByFlanks.R | 2 +- R/plotCompareGenos.R | 6 +++--- R/plotGenos.R | 5 ++++- README.md | 5 +++++ build/vignette.rds |binary inst/doc/ABHgenotypeR-vignette.Rmd | 2 +- inst/doc/ABHgenotypeR-vignette.html | 12 ++++++------ vignettes/ABHgenotypeR-vignette.Rmd | 2 +- 13 files changed, 40 insertions(+), 31 deletions(-)