Title: Cryptic Transcription Analysis in Yeast
Description: Calculates cryptic scores for genes using the ratio
(Cheung et al., 2008), the 3' enrichment method
(DeGennaro et al., 2013) and the probabilistic
method. It also provide methods to estimates
cryptic transcription start sites.
Author: Nicole Uwimana, Benjamin Haibe-Kains, Francois Robert
Maintainer: Nicole Uwimana <nicole.uwimana@gmail.com>
Diff between yCrypticRNAs versions 0.99.1 dated 2016-01-08 and 0.99.2 dated 2016-02-08
yCrypticRNAs-0.99.1/yCrypticRNAs/inst/doc/yCrypticRNAs.html |only yCrypticRNAs-0.99.2/yCrypticRNAs/DESCRIPTION | 10 +++++----- yCrypticRNAs-0.99.2/yCrypticRNAs/MD5 | 8 ++++---- yCrypticRNAs-0.99.2/yCrypticRNAs/build/vignette.rds |binary yCrypticRNAs-0.99.2/yCrypticRNAs/inst/doc/yCrypticRNAs.pdf |only yCrypticRNAs-0.99.2/yCrypticRNAs/src/bedFile.h | 8 ++++---- 6 files changed, 13 insertions(+), 13 deletions(-)
Title: Structured Trellis Displays Without Strips for Lattice Graphics
Description: For making Trellis-type conditioning plots without strip labels.
This is useful for displaying the structure of results from factorial designs
and other studies when many conditioning variables would clutter the display
with layers of redundant strip labels. Settings of the variables are encoded by
layout and spacing in the trellis array and decoded by a separate legend. The
functionality is implemented by a single S3 generic strucplot() function that
is a wrapper for the Lattice package's xyplot() function. This allows access to
all Lattice graphics capabilities in the usual way.
Author: Bert Gunter [aut, cre]
Maintainer: Bert Gunter <bgunter@comcast.net>
Diff between stripless versions 1.0 dated 2016-01-30 and 1.0-1 dated 2016-02-08
DESCRIPTION | 8 ++-- MD5 | 10 ++--- R/print.structured.R | 75 ++++++++++++++++++++--------------------- man/Examples/strucplot_exmpl.R | 62 ++++++++++++++++----------------- man/print.structured.Rd | 34 +++++++++--------- man/strucplot.Rd | 62 ++++++++++++++++----------------- 6 files changed, 126 insertions(+), 125 deletions(-)
Title: Penalized Quantile Regression
Description: Performs penalized quantile regression for LASSO, SCAD and MCP functions including group penalties. Provides a function that automatically generates lambdas and evaluates different models with cross validation or BIC, including a large p version of BIC.
Author: Ben Sherwood [aut, cre], Adam Maidman [ctb]
Maintainer: Ben Sherwood <bsherwo2@jhu.edu>
Diff between rqPen versions 1.2 dated 2015-10-22 and 1.3 dated 2016-02-08
rqPen-1.2/rqPen/man/groupMultLambda.Rd |only rqPen-1.2/rqPen/man/group_derivs.Rd |only rqPen-1.2/rqPen/man/rq.group.lin.prog.Rd |only rqPen-1.3/rqPen/DESCRIPTION | 10 - rqPen-1.3/rqPen/MD5 | 14 +- rqPen-1.3/rqPen/NAMESPACE | 10 - rqPen-1.3/rqPen/NEWS | 7 + rqPen-1.3/rqPen/R/rqPen.R | 163 ++++++----------------------- rqPen-1.3/rqPen/man/cv.rq.group.pen.Rd | 5 rqPen-1.3/rqPen/man/groupQICDMultLambda.Rd |only 10 files changed, 63 insertions(+), 146 deletions(-)
Title: Rounded Mixture Package. Performs Probability Mass Function
Estimation with Nonparametric Mixtures of Rounded Kernels
Description: Performs probability mass function estimation with nonparametric mixtures of rounded kernels.
Author: Antonio Canale [aut,cre], Nicola Lunardon [ctb]
Maintainer: Antonio Canale <antonio.canale@unito.it>
Diff between rmp versions 1.0 dated 2013-04-17 and 2.0 dated 2016-02-08
rmp-1.0/rmp/Makevars |only rmp-1.0/rmp/R/dpmpoiss.R |only rmp-1.0/rmp/R/dpmrg.R |only rmp-1.0/rmp/future.txt |only rmp-1.0/rmp/man/dpmpoiss.Rd |only rmp-1.0/rmp/man/dpmrg.Rd |only rmp-1.0/rmp/src/dpmpois.c |only rmp-2.0/rmp/DESCRIPTION | 20 - rmp-2.0/rmp/MD5 | 25 +- rmp-2.0/rmp/NAMESPACE | 5 rmp-2.0/rmp/R/generic.R | 17 + rmp-2.0/rmp/R/npmp.R |only rmp-2.0/rmp/R/rmg.R |only rmp-2.0/rmp/inst/CITATION | 11 rmp-2.0/rmp/inst/ChangeLog |only rmp-2.0/rmp/man/dp.post.est.Rd | 11 rmp-2.0/rmp/man/npmp.Rd |only rmp-2.0/rmp/man/rmg.Rd |only rmp-2.0/rmp/src/npmpois.c |only rmp-2.0/rmp/src/rmg.c | 458 +++++++++++++++++++++++++++++++---------- 20 files changed, 403 insertions(+), 144 deletions(-)
Title: Metric Unfolding
Description: Multidimensional unfolding using Schoenemann's algorithm for metric
and Procrustes rotation of unfolding results.
Author: Martin Elff
Maintainer: Martin Elff <martin@elff.eu>
Diff between munfold versions 0.3.4 dated 2016-02-07 and 0.3.5 dated 2016-02-08
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Generalized Waring Regression Model for Count Data
Description: Statistical functions to fit, validate and describe a Generalized
Waring Regression Model (GWRM).
Author: Antonio Jose Saez-Castillo [aut, cre],
Silverio Vilchez-Lopez [aut],
Maria Jose Olmo-Jimenez [aut],
Jose Rodriguez-Avi [aut],
Antonio Conde-Sanchez [aut],
Ana Maria Martinez-Rodriguez [aut]
Maintainer: Antonio Jose Saez-Castillo <ajsaez@ujaen.es>
Diff between GWRM versions 2.0 dated 2015-04-21 and 2.1.0.1 dated 2016-02-08
GWRM-2.0/GWRM/build |only GWRM-2.0/GWRM/data/goals.RData |only GWRM-2.0/GWRM/man/GWRM-package.Rd |only GWRM-2.1.0.1/GWRM/DESCRIPTION | 14 GWRM-2.1.0.1/GWRM/MD5 | 37 + GWRM-2.1.0.1/GWRM/NAMESPACE | 72 ++- GWRM-2.1.0.1/GWRM/R/GWRM.R |only GWRM-2.1.0.1/GWRM/R/LogLik.R |only GWRM-2.1.0.1/GWRM/R/add.R |only GWRM-2.1.0.1/GWRM/R/data.R |only GWRM-2.1.0.1/GWRM/R/getResponse.R |only GWRM-2.1.0.1/GWRM/R/gw.r | 695 +++++++++------------------------- GWRM-2.1.0.1/GWRM/R/partvar.R |only GWRM-2.1.0.1/GWRM/R/predict.gw.r |only GWRM-2.1.0.1/GWRM/R/residuals.R |only GWRM-2.1.0.1/GWRM/R/rgw.r |only GWRM-2.1.0.1/GWRM/data/goals.rda |only GWRM-2.1.0.1/GWRM/inst/NEWS.Rd | 11 GWRM-2.1.0.1/GWRM/man/GWRM.Rd |only GWRM-2.1.0.1/GWRM/man/add1.gw.Rd | 68 +-- GWRM-2.1.0.1/GWRM/man/drop1.gw.Rd | 63 +-- GWRM-2.1.0.1/GWRM/man/goals.Rd | 36 - GWRM-2.1.0.1/GWRM/man/gw.Rd | 185 +++------ GWRM-2.1.0.1/GWRM/man/partvar.Rd | 51 -- GWRM-2.1.0.1/GWRM/man/predict.gw.Rd | 41 -- GWRM-2.1.0.1/GWRM/man/residuals.gw.Rd | 81 +-- GWRM-2.1.0.1/GWRM/man/rgw.Rd |only 27 files changed, 479 insertions(+), 875 deletions(-)
Title: Assessment of Stability of Individual Objects or Clusters in
Partitioning Solutions
Description: Allows one to assess the stability of individual objects, clusters
and whole clustering solutions based on repeated runs of the K-means and K-medoids
partitioning algorithms.
Author: Etienne Lord, Matthieu Willems, Francois-Joseph Lapointe, and Vladimir
Makarenkov
Maintainer: Etienne Lord <m.etienne.lord@gmail.com>
Diff between ClusterStability versions 1.0.2 dated 2015-10-14 and 1.0.3 dated 2016-02-08
DESCRIPTION | 18 +++++++++++------- MD5 | 10 +++++----- NAMESPACE | 2 +- NEWS | 9 ++++++++- R/ClusterStability.R | 37 +++++++++++++++++++++---------------- man/Stirling2nd.Rd | 2 +- 6 files changed, 47 insertions(+), 31 deletions(-)
More information about ClusterStability at CRAN
Permanent link
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting, displaying and checking GAMLSS Models.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss versions 4.3-7 dated 2016-01-05 and 4.3-8 dated 2016-02-08
DESCRIPTION | 16 ++-- MD5 | 23 +++--- NAMESPACE | 4 - R/DropAddStepGAIC-Parallel.R | 53 ++++++++++++-- R/VuongClarkTest.R |only R/lo_new.R | 153 ++++++++++++++++++++++++++++++++++++++++--- R/stepGAICAll-A-parallel.R | 2 R/stepTGD.R | 60 +++++++++++++--- R/stepTGDAll-A-parallel.R |only R/term.plot-new.R | 32 +++++--- inst/doc/NEWS.txt | 10 ++ man/VC.test.Rd |only man/gamlssVGD.Rd | 26 ++++++- man/lo.Rd | 49 +++++++++++-- 14 files changed, 357 insertions(+), 71 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 1.9 dated 2016-01-26 and 1.9.1 dated 2016-02-08
DESCRIPTION | 17 MD5 | 115 - NAMESPACE | 313 +- NEWS | 876 +------- NEWS.md |only R/helpfunctions.R | 1537 +++++++------- R/sjPlotAncovaLSMeans.R | 45 R/sjPlotAnova.R | 759 +++---- R/sjPlotCorr.R | 713 +++--- R/sjPlotFrequencies.R | 1563 +++++++------- R/sjPlotGLME.R | 4861 ++++++++++++++++++++++----------------------- R/sjPlotGroupFrequencies.R | 61 R/sjPlotGroupPropTable.R | 524 ++-- R/sjPlotInteractions.R | 2975 +++++++++++++-------------- R/sjPlotLikert.R | 1322 ++++++------ R/sjPlotLinreg.R | 2917 +++++++++++++-------------- R/sjPlotLinregMultiple.R | 15 R/sjPlotOdds.R | 1801 ++++++++-------- R/sjPlotOddsMultiple.R | 22 R/sjPlotPCA.R | 941 ++++---- R/sjPlotPearsonsChi2Test.R | 291 +- R/sjPlotPolynomials.R | 565 ++--- R/sjPlotPropTable.R | 35 R/sjPlotScatter.R | 743 +++--- R/sjPlotStackFrequencies.R | 8 R/sjTabCorr.R | 1021 ++++----- R/sjTabFrequencies.R | 2 R/sjTabGrpmean.R | 11 R/sjTabItemAnalysis.R | 809 +++---- R/sjTabLinReg.R | 66 R/sjTabMannWhitney.R | 172 - R/sjTabPCA.R | 1189 +++++------ R/sjTabPropTable.R | 1099 +++++----- R/sjTabSPSS.R | 29 R/sjTabStackFrq.R | 1042 ++++----- R/zzz.R | 2 README.md | 24 man/sjPlot-package.Rd | 102 man/sjp.aov1.Rd | 49 man/sjp.frq.Rd | 9 man/sjp.glm.Rd | 25 man/sjp.glmer.Rd | 20 man/sjp.glmm.Rd | 2 man/sjp.gpt.Rd | 2 man/sjp.grpfrq.Rd | 9 man/sjp.int.Rd | 15 man/sjp.lm.Rd | 11 man/sjp.lmer.Rd | 25 man/sjp.lmm.Rd | 2 man/sjp.scatter.Rd | 21 man/sjp.xtab.Rd | 24 man/sjt.lm.Rd | 3 man/sjt.xtab.Rd | 21 man/view_df.Rd | 9 tests |only 55 files changed, 14254 insertions(+), 14580 deletions(-)
Title: Robust Estimation for Compositional Data
Description: Methods for analysis of compositional data including robust
methods, imputation, methods to replace rounded zeros, (robust) outlier
detection for compositional data, (robust) principal component analysis for
compositional data, (robust) factor analysis for compositional data, (robust)
discriminant analysis for compositional data (Fisher rule), robust regression
with compositional predictors and (robust) Anderson-Darling normality tests for
compositional data as well as popular log-ratio transformations (addLR, cenLR,
isomLR, and their inverse transformations). In addition, visualisation and
diagnostic tools are implemented as well as high and low-level plot functions
for the ternary diagram.
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ <templ@tuwien.ac.at>
Diff between robCompositions versions 1.9.1 dated 2015-05-06 and 2.0.0 dated 2016-02-08
robCompositions-1.9.1/robCompositions/R/isomLRinv.R |only robCompositions-1.9.1/robCompositions/R/plot.outCoDa.R |only robCompositions-1.9.1/robCompositions/R/print.adtestWrapper.R |only robCompositions-1.9.1/robCompositions/R/print.daFisher.R |only robCompositions-1.9.1/robCompositions/R/print.outCoDa.R |only robCompositions-1.9.1/robCompositions/R/print.pcaCoDa.R |only robCompositions-1.9.1/robCompositions/R/rcrox-package.R |only robCompositions-1.9.1/robCompositions/R/robVariation.R |only robCompositions-1.9.1/robCompositions/R/summary.adtestWrapper.R |only robCompositions-1.9.1/robCompositions/man/isomLRinv.Rd |only robCompositions-1.9.1/robCompositions/man/plot.outCoDa.Rd |only robCompositions-1.9.1/robCompositions/man/print.adtestWrapper.Rd |only robCompositions-1.9.1/robCompositions/man/print.daFisher.Rd |only robCompositions-1.9.1/robCompositions/man/print.outCoDa.Rd |only robCompositions-1.9.1/robCompositions/man/print.pcaCoDa.Rd |only robCompositions-1.9.1/robCompositions/man/robVariation.Rd |only robCompositions-1.9.1/robCompositions/man/summary.adtestWrapper.Rd |only robCompositions-2.0.0/robCompositions/DESCRIPTION | 36 robCompositions-2.0.0/robCompositions/MD5 | 241 +++--- robCompositions-2.0.0/robCompositions/NAMESPACE | 169 +++- robCompositions-2.0.0/robCompositions/NEWS | 10 robCompositions-2.0.0/robCompositions/R/aDist.R | 4 robCompositions-2.0.0/robCompositions/R/addLR.R | 49 + robCompositions-2.0.0/robCompositions/R/addLRinv.R | 1 robCompositions-2.0.0/robCompositions/R/adjust.R | 1 robCompositions-2.0.0/robCompositions/R/adtest.R | 5 robCompositions-2.0.0/robCompositions/R/adtestWrapper.R | 117 ++- robCompositions-2.0.0/robCompositions/R/biplot.factanal.R |only robCompositions-2.0.0/robCompositions/R/biplot.pcaCoDa.R |only robCompositions-2.0.0/robCompositions/R/cenLR.R | 1 robCompositions-2.0.0/robCompositions/R/cenLRinv.R | 1 robCompositions-2.0.0/robCompositions/R/compareMahal.R |only robCompositions-2.0.0/robCompositions/R/constSum.R | 1 robCompositions-2.0.0/robCompositions/R/daFisher.R | 381 +++++++--- robCompositions-2.0.0/robCompositions/R/dataSets.R |only robCompositions-2.0.0/robCompositions/R/gm.R | 1 robCompositions-2.0.0/robCompositions/R/ilrregression.R | 60 - robCompositions-2.0.0/robCompositions/R/impAll.R | 1 robCompositions-2.0.0/robCompositions/R/impCoda.R | 13 robCompositions-2.0.0/robCompositions/R/impKNNa.R | 1 robCompositions-2.0.0/robCompositions/R/impPCA.R | 2 robCompositions-2.0.0/robCompositions/R/impRZalr.R | 7 robCompositions-2.0.0/robCompositions/R/impRZilr.R | 239 +++--- robCompositions-2.0.0/robCompositions/R/imputeBDLs.R |only robCompositions-2.0.0/robCompositions/R/isomLR.R | 42 - robCompositions-2.0.0/robCompositions/R/lmCoDaX.R | 9 robCompositions-2.0.0/robCompositions/R/missPatterns.R | 5 robCompositions-2.0.0/robCompositions/R/orthbasis.R | 1 robCompositions-2.0.0/robCompositions/R/outCoDa.R | 91 ++ robCompositions-2.0.0/robCompositions/R/pcaCoDa.R | 26 robCompositions-2.0.0/robCompositions/R/pfa.R | 252 +++--- robCompositions-2.0.0/robCompositions/R/plot.imp.R | 4 robCompositions-2.0.0/robCompositions/R/plot.pcaCoDa.R | 2 robCompositions-2.0.0/robCompositions/R/print.imp.R | 1 robCompositions-2.0.0/robCompositions/R/robCompositions-package.R |only robCompositions-2.0.0/robCompositions/R/robilrregression.R | 60 - robCompositions-2.0.0/robCompositions/R/summary.imp.R | 2 robCompositions-2.0.0/robCompositions/R/ternaryDiag.R | 9 robCompositions-2.0.0/robCompositions/R/ternaryDiagAbline.R | 3 robCompositions-2.0.0/robCompositions/R/ternaryDiagEllipse.R | 5 robCompositions-2.0.0/robCompositions/R/ternaryDiagPoints.R | 3 robCompositions-2.0.0/robCompositions/R/utils.R | 65 - robCompositions-2.0.0/robCompositions/R/variation.R |only robCompositions-2.0.0/robCompositions/R/zeroOut.R |only robCompositions-2.0.0/robCompositions/R/zzz.R | 52 - robCompositions-2.0.0/robCompositions/build/vignette.rds |binary robCompositions-2.0.0/robCompositions/data/arcticLake.rda |binary robCompositions-2.0.0/robCompositions/data/cancer.rda |only robCompositions-2.0.0/robCompositions/data/coffee.rda |binary robCompositions-2.0.0/robCompositions/data/economy.rda |only robCompositions-2.0.0/robCompositions/data/expenditures.rda |binary robCompositions-2.0.0/robCompositions/data/expendituresEU.rda |binary robCompositions-2.0.0/robCompositions/data/gemas.rda |only robCompositions-2.0.0/robCompositions/data/haplogroups.rda |binary robCompositions-2.0.0/robCompositions/data/laborForce.rda |only robCompositions-2.0.0/robCompositions/data/lifeExpGdp.rda |only robCompositions-2.0.0/robCompositions/data/machineOperators.rda |binary robCompositions-2.0.0/robCompositions/data/mcad.rda |only robCompositions-2.0.0/robCompositions/data/mortality.rda |only robCompositions-2.0.0/robCompositions/data/phd.rda |binary robCompositions-2.0.0/robCompositions/data/skyeLavas.rda |binary robCompositions-2.0.0/robCompositions/data/trondelagC.rda |only robCompositions-2.0.0/robCompositions/data/trondelagO.rda |only robCompositions-2.0.0/robCompositions/inst/doc/imputation.R | 107 -- robCompositions-2.0.0/robCompositions/inst/doc/imputation.Rnw | 193 ++--- robCompositions-2.0.0/robCompositions/inst/doc/imputation.pdf |binary robCompositions-2.0.0/robCompositions/inst/doc/robCompositions-overview.pdf |binary robCompositions-2.0.0/robCompositions/man/aDist.Rd | 72 + robCompositions-2.0.0/robCompositions/man/addLR.Rd | 61 - robCompositions-2.0.0/robCompositions/man/addLRinv.Rd | 70 - robCompositions-2.0.0/robCompositions/man/adjust.Rd | 82 +- robCompositions-2.0.0/robCompositions/man/adtest.Rd | 137 +-- robCompositions-2.0.0/robCompositions/man/adtestWrapper.Rd | 134 ++- robCompositions-2.0.0/robCompositions/man/arcticLake.Rd | 49 - robCompositions-2.0.0/robCompositions/man/biplot.factanal.Rd |only robCompositions-2.0.0/robCompositions/man/biplot.pcaCoDa.Rd |only robCompositions-2.0.0/robCompositions/man/bootnComp.Rd | 45 - robCompositions-2.0.0/robCompositions/man/cancer.Rd |only robCompositions-2.0.0/robCompositions/man/cenLR.Rd | 52 - robCompositions-2.0.0/robCompositions/man/cenLRinv.Rd | 53 - robCompositions-2.0.0/robCompositions/man/coffee.Rd | 53 - robCompositions-2.0.0/robCompositions/man/compareMahal.Rd |only robCompositions-2.0.0/robCompositions/man/constSum.Rd | 39 - robCompositions-2.0.0/robCompositions/man/daFisher.Rd | 147 ++- robCompositions-2.0.0/robCompositions/man/economy.Rd |only robCompositions-2.0.0/robCompositions/man/expenditures.Rd | 51 - robCompositions-2.0.0/robCompositions/man/expendituresEU.Rd | 60 - robCompositions-2.0.0/robCompositions/man/gemas.Rd |only robCompositions-2.0.0/robCompositions/man/gm.Rd | 27 robCompositions-2.0.0/robCompositions/man/haplogroups.Rd | 55 - robCompositions-2.0.0/robCompositions/man/impAll.Rd | 63 - robCompositions-2.0.0/robCompositions/man/impCoda.Rd | 125 +-- robCompositions-2.0.0/robCompositions/man/impKNNa.Rd | 114 +- robCompositions-2.0.0/robCompositions/man/impRZalr.Rd | 92 +- robCompositions-2.0.0/robCompositions/man/impRZilr.Rd | 133 +-- robCompositions-2.0.0/robCompositions/man/imputeBDLs.Rd |only robCompositions-2.0.0/robCompositions/man/isomLR.Rd | 65 + robCompositions-2.0.0/robCompositions/man/laborForce.Rd |only robCompositions-2.0.0/robCompositions/man/lifeExpGdp.Rd |only robCompositions-2.0.0/robCompositions/man/lmCoDaX.Rd | 73 - robCompositions-2.0.0/robCompositions/man/machineOperators.Rd | 56 - robCompositions-2.0.0/robCompositions/man/mcad.Rd |only robCompositions-2.0.0/robCompositions/man/missPatterns.Rd | 53 - robCompositions-2.0.0/robCompositions/man/mortality.Rd |only robCompositions-2.0.0/robCompositions/man/orthbasis.Rd | 40 - robCompositions-2.0.0/robCompositions/man/outCoDa.Rd | 121 +-- robCompositions-2.0.0/robCompositions/man/pcaCoDa.Rd | 86 +- robCompositions-2.0.0/robCompositions/man/pfa.Rd | 121 +-- robCompositions-2.0.0/robCompositions/man/phd.Rd | 69 + robCompositions-2.0.0/robCompositions/man/plot.imp.Rd | 196 +++-- robCompositions-2.0.0/robCompositions/man/plot.pcaCoDa.Rd | 53 - robCompositions-2.0.0/robCompositions/man/print.imp.Rd | 73 + robCompositions-2.0.0/robCompositions/man/robCompositions-package.Rd | 98 +- robCompositions-2.0.0/robCompositions/man/skyeLavas.Rd | 44 - robCompositions-2.0.0/robCompositions/man/summary.imp.Rd | 75 + robCompositions-2.0.0/robCompositions/man/ternaryDiag.Rd | 83 +- robCompositions-2.0.0/robCompositions/man/ternaryDiagAbline.Rd | 41 - robCompositions-2.0.0/robCompositions/man/ternaryDiagEllipse.Rd | 56 - robCompositions-2.0.0/robCompositions/man/ternaryDiagPoints.Rd | 45 - robCompositions-2.0.0/robCompositions/man/trondelagC.Rd |only robCompositions-2.0.0/robCompositions/man/trondelagO.Rd |only robCompositions-2.0.0/robCompositions/man/variation.Rd |only robCompositions-2.0.0/robCompositions/man/zeroOut.Rd |only robCompositions-2.0.0/robCompositions/vignettes/framed.sty |only robCompositions-2.0.0/robCompositions/vignettes/imputation-concordance.tex |only robCompositions-2.0.0/robCompositions/vignettes/imputation-plot1.pdf |only robCompositions-2.0.0/robCompositions/vignettes/imputation-plot4.pdf |only robCompositions-2.0.0/robCompositions/vignettes/imputation.Rnw | 193 ++--- 148 files changed, 3286 insertions(+), 2342 deletions(-)
More information about robCompositions at CRAN
Permanent link
Title: Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Description: A collection of matrix functions for teaching and learning matrix
linear algebra as used in multivariate statistical methods. These functions are
mainly for tutorial purposes in learning matrix algebra ideas using R. In some
cases, functions are provided for concepts available elsewhere in R, but where
the function call or name is not obvious. In other cases, functions are provided
to show or demonstrate an algorithm. In addition, a collection of functions are
provided for drawing vector diagrams in 2D and 3D.
Author: Michael Friendly [aut, cre], John Fox [aut], Georges Monette [ctb], Gaston Sanchez [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between matlib versions 0.7.0 dated 2016-01-06 and 0.7.2 dated 2016-02-08
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS | 11 +++++++++-- R/corner.R | 3 ++- R/regvec3d.R | 27 ++++++++++++++++++++++----- README.md | 2 +- inst/doc/gramreg.html | 40 ++++++++++++++++++++-------------------- man/plot.regvec3d.Rd | 11 ++++++++--- 9 files changed, 75 insertions(+), 44 deletions(-)
Title: Repulsive Text and Label Geoms for 'ggplot2'
Description:
Provides text and label geoms for 'ggplot2' that help to avoid overlapping
text labels. Labels repel away from each other and away from the data
points.
Author: Kamil Slowikowski [aut, cre]
Maintainer: Kamil Slowikowski <kslowikowski@fas.harvard.edu>
Diff between ggrepel versions 0.4 dated 2016-01-12 and 0.5 dated 2016-02-08
ggrepel-0.4/ggrepel/man/centroid.Rd |only ggrepel-0.4/ggrepel/man/euclid.Rd |only ggrepel-0.4/ggrepel/man/intersect_line_rectangle.Rd |only ggrepel-0.4/ggrepel/man/makeContent.labelrepelgrob.Rd |only ggrepel-0.4/ggrepel/man/makeContent.textrepelgrob.Rd |only ggrepel-0.4/ggrepel/man/overlaps.Rd |only ggrepel-0.4/ggrepel/man/point_within_box.Rd |only ggrepel-0.4/ggrepel/man/put_within_bounds.Rd |only ggrepel-0.4/ggrepel/man/repel_boxes.Rd |only ggrepel-0.4/ggrepel/man/repel_force.Rd |only ggrepel-0.4/ggrepel/man/spring_force.Rd |only ggrepel-0.5/ggrepel/DESCRIPTION | 6 ggrepel-0.5/ggrepel/MD5 | 50 - ggrepel-0.5/ggrepel/NAMESPACE | 2 ggrepel-0.5/ggrepel/NEWS | 70 ++ ggrepel-0.5/ggrepel/R/RcppExports.R | 103 +-- ggrepel-0.5/ggrepel/R/geom-label-repel.R | 294 +++++---- ggrepel-0.5/ggrepel/R/geom-text-repel.R | 273 +++++---- ggrepel-0.5/ggrepel/README.md | 10 ggrepel-0.5/ggrepel/inst/doc/ggrepel.Rmd | 49 + ggrepel-0.5/ggrepel/inst/doc/ggrepel.html | 62 +- ggrepel-0.5/ggrepel/man/geom_text_repel.Rd | 52 + ggrepel-0.5/ggrepel/src/RcppExports.cpp | 82 -- ggrepel-0.5/ggrepel/src/repel_boxes.cpp | 303 ++++++---- ggrepel-0.5/ggrepel/vignettes/Makefile | 1 ggrepel-0.5/ggrepel/vignettes/figures/ggrepel/geom_label_repel-1.png |binary ggrepel-0.5/ggrepel/vignettes/figures/ggrepel/geom_text_repel-1.png |binary ggrepel-0.5/ggrepel/vignettes/figures/ggrepel/geom_text_repel_options-1.png |binary ggrepel-0.5/ggrepel/vignettes/figures/ggrepel/line_plot-1.png |only ggrepel-0.5/ggrepel/vignettes/figures/ggrepel/volcano-1.png |binary ggrepel-0.5/ggrepel/vignettes/ggrepel.Rmd | 49 + ggrepel-0.5/ggrepel/vignettes/ggrepel.md | 56 + 32 files changed, 889 insertions(+), 573 deletions(-)
Title: Miscellaneous Functions for Southwest Fisheries Science Center
Description: Collection of conversion, analytical, geodesic, mapping, and
plotting functions. Used to support packages and code written by
researchers at the Southwest Fisheries Science Center of the National
Oceanic and Atmospheric Administration.
Author: Eric Archer
Maintainer: Eric Archer <eric.archer@noaa.gov>
Diff between swfscMisc versions 1.0.6 dated 2015-07-29 and 1.0.9 dated 2016-02-08
DESCRIPTION | 9 +-- MD5 | 102 +++++++++++++++++----------------- NAMESPACE | 5 + NEWS.md | 26 ++++++++ R/convert.angle.R | 15 ++--- R/convert.distance.R | 8 ++ R/das.map.R | 1 R/das.read.R | 14 ++-- R/datum.R | 16 ++--- R/destination.R | 138 ++++++++++++++++++++++++---------------------- R/distance.R | 133 +++++++++++++++++++++++--------------------- R/harmonic.mean.R | 8 ++ R/isBetween.R | 8 +- R/transparent.R |only R/zero.pad.R | 2 man/affin.prop.Rd | 5 + man/bearing.Rd | 7 +- man/box.area.Rd | 7 +- man/braces.Rd | 15 ++--- man/central.quantile.Rd | 3 - man/circle.polygon.Rd | 25 ++++---- man/color.name.Rd | 2 man/convert.angle.Rd | 10 ++- man/convert.distance.Rd | 9 +-- man/copy.tri.Rd | 3 - man/crossing.point.Rd | 7 +- man/das.map.Rd | 10 +-- man/das.merge.acoustic.Rd | 2 man/das.read.Rd | 2 man/das.spp.freq.Rd | 2 man/datum.Rd | 12 ++-- man/destination.Rd | 28 +++++---- man/distance.Rd | 30 +++++----- man/diversity.Rd | 2 man/fisher.method.p.Rd | 4 - man/geometric.mean.Rd | 3 - man/harmonic.mean.Rd | 10 ++- man/isBetween.Rd | 16 ++--- man/lab.wid.Rd | 2 man/lat.lon.axes.Rd | 4 - man/na.count.Rd | 3 - man/normalize.Rd | 3 - man/odds.Rd | 3 - man/one.arg.Rd | 3 - man/pVal.Rd | 3 - man/row.col.page.fit.Rd | 5 + man/sample.map.Rd | 18 +++--- man/scatterdens.Rd | 9 +-- man/sex.symbols.Rd | 11 ++- man/transparent.Rd |only man/uniform.test.Rd | 3 - man/which.nearest.Rd | 13 ++-- man/zero.pad.Rd | 8 +- 53 files changed, 438 insertions(+), 349 deletions(-)
Title: Interface Between GRASS 6+ Geographical Information System and R
Description: Interpreted interface between GRASS 6+ geographical
information system and R, based on starting R from within the GRASS
environment, or running free-standing R in a temporary GRASS location;
the package provides facilities for using all GRASS commands from the
R command line. This package may not be used for GRASS 7, for which
rgrass7 should be used.
Author: Roger Bivand [cre, aut],
Rainer Krug [ctb],
Markus Neteler [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spgrass6 versions 0.8-8 dated 2015-09-28 and 0.8-9 dated 2016-02-08
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/spgrass6.R | 4 ++-- inst/doc/spgrass6_0.3.pdf |binary 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Statistical Process Control -- Collection of Some Useful
Functions
Description: Evaluation of control charts by means of
the zero-state, steady-state ARL (Average Run Length) and RL quantiles.
Setting up control charts for given in-control ARL. The control charts
under consideration are one- and two-sided EWMA, CUSUM, and
Shiryaev-Roberts schemes for monitoring the mean of normally
distributed independent data. ARL calculation
of the same set of schemes under drift are added.
Other charts and parameters are in preparation.
Further SPC areas will be covered as well
(sampling plans, capability indices ...).
Author: Sven Knoth
Maintainer: Sven Knoth <Sven.Knoth@gmx.de>
Diff between spc versions 0.5.2 dated 2015-11-01 and 0.5.3 dated 2016-02-08
DESCRIPTION | 8 +++--- MD5 | 13 ++++++----- NAMESPACE | 1 R/xshewhart.ar1.arl.R |only man/xshewhart.ar1.arl.Rd |only src/allspc.c | 54 +++++++++++++++++++++++++++++++++++++++++++++++ src/mewma_arl_f.c | 2 - src/mewma_psi.c | 2 - src/xshewhart_ar1_arl.c |only 9 files changed, 69 insertions(+), 11 deletions(-)
Title: Estimate Permutation p-Values for Random Forest Importance
Metrics
Description: Estimate significance of importance metrics
for a Random Forest model by permuting the response
variable. Produces null distribution of importance
metrics for each predictor variable and p-value of
observed.
Author: Eric Archer
Maintainer: Eric Archer <eric.archer@noaa.gov>
Diff between rfPermute versions 1.9.2 dated 2015-07-29 and 1.9.3 dated 2016-02-08
DESCRIPTION | 13 +++++++------ MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 6 ++---- NEWS.md | 12 ++++++++++++ R/clean.rf.data.R | 19 ++++++++++++------- R/plot.rp.importance.r | 8 ++++---- R/rfPermute.formula.R | 1 + R/rp.combine.R | 3 +-- R/rp.importance.R | 1 + man/calc.imp.pval.Rd | 6 +++--- man/clean.rf.data.Rd | 2 +- man/exptd.err.rate.Rd | 4 ++-- man/plot.rfPermute.Rd | 8 ++++---- man/plot.rp.importance.Rd | 4 ++-- man/proximity.plot.Rd | 7 ++++--- man/rfPermute.Rd | 25 +++++++++++++------------ man/rp.combine.Rd | 4 +++- man/rp.importance.Rd | 6 +++--- 18 files changed, 92 insertions(+), 71 deletions(-)
Title: Estimation of Overlapping in Empirical Distributions
Description: Functions for estimating the overlapping area of two or more empirical distributions.
Author: Massimiliano Pastore
Maintainer: Massimiliano Pastore <massimiliano.pastore@unipd.it>
Diff between overlapping versions 1.1 dated 2016-01-08 and 1.2 dated 2016-02-08
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS | 6 +++++- 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.
Author: Bart Kranstauber <bart.kranstauber@uni-konstanz.de>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Maintainer: Bart Kranstauber <bart.kranstauber@uni-konstanz.de>
Diff between move versions 1.6.539 dated 2016-02-02 and 1.6.541 dated 2016-02-08
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- inst/doc/browseMovebank.pdf |binary inst/doc/move.pdf |binary tests/testthat/test.smallFunctions.R | 4 ++-- 6 files changed, 14 insertions(+), 10 deletions(-)
Title: Performing Continuous-Time Microsimulation
Description: This entry-level toolkit allows performing continuous-time microsimulation for a wide range of demographic applications. Individual life-courses are specified by a continuous-time multi-state model.
Author: Sabine Zinn
Maintainer: Sabine Zinn <sabine.zinn@lifbi.de>
Diff between MicSim versions 1.0.10 dated 2015-11-10 and 1.0.11 dated 2016-02-08
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/micSim.r | 18 ++++++++---------- inst/NEWS.Rd | 5 +++++ man/MicSim-package.Rd | 6 +++--- 5 files changed, 25 insertions(+), 22 deletions(-)
Title: Models for Health Economic Evaluation
Description: Health Economic Evaluation Modelling.
Markov models (homogeneous and non-homogeneous)
for health economic evaluation. Model comparison,
sensitivity and probabilistic analysis.
Author: Kevin Zarca [aut], Antoine Filipovic-Pierucci [aut,cre]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>
Diff between heemod versions 0.1.0 dated 2015-12-23 and 0.2.0 dated 2016-02-08
heemod-0.1.0/heemod/inst/doc/homogenous.R |only heemod-0.1.0/heemod/inst/doc/homogenous.Rmd |only heemod-0.1.0/heemod/inst/doc/homogenous.html |only heemod-0.1.0/heemod/inst/doc/non-homogenous.R |only heemod-0.1.0/heemod/inst/doc/non-homogenous.Rmd |only heemod-0.1.0/heemod/inst/doc/non-homogenous.html |only heemod-0.1.0/heemod/vignettes/homogenous.Rmd |only heemod-0.1.0/heemod/vignettes/non-homogenous.Rmd |only heemod-0.2.0/heemod/DESCRIPTION | 18 heemod-0.2.0/heemod/MD5 | 117 ++-- heemod-0.2.0/heemod/NAMESPACE | 45 + heemod-0.2.0/heemod/R/density.R |only heemod-0.2.0/heemod/R/icer_det.R |only heemod-0.2.0/heemod/R/imports.R | 35 + heemod-0.2.0/heemod/R/matrix.R | 121 ++-- heemod-0.2.0/heemod/R/model.R | 182 ++++-- heemod-0.2.0/heemod/R/newdata.R | 162 +----- heemod-0.2.0/heemod/R/parameters.R | 142 +---- heemod-0.2.0/heemod/R/resamp.R |only heemod-0.2.0/heemod/R/run_model.R | 246 +++++---- heemod-0.2.0/heemod/R/sensitivity.R |only heemod-0.2.0/heemod/R/states.R | 100 +-- heemod-0.2.0/heemod/R/utils.R | 42 + heemod-0.2.0/heemod/README.md | 39 - heemod-0.2.0/heemod/build/vignette.rds |binary heemod-0.2.0/heemod/inst/doc/homogeneous.R |only heemod-0.2.0/heemod/inst/doc/homogeneous.Rmd |only heemod-0.2.0/heemod/inst/doc/homogeneous.html |only heemod-0.2.0/heemod/inst/doc/introduction.R | 17 heemod-0.2.0/heemod/inst/doc/introduction.Rmd | 41 - heemod-0.2.0/heemod/inst/doc/introduction.html | 504 ++++++------------- heemod-0.2.0/heemod/inst/doc/non-homogeneous.R |only heemod-0.2.0/heemod/inst/doc/non-homogeneous.Rmd |only heemod-0.2.0/heemod/inst/doc/non-homogeneous.html |only heemod-0.2.0/heemod/inst/doc/probabilistic.R |only heemod-0.2.0/heemod/inst/doc/probabilistic.Rmd |only heemod-0.2.0/heemod/inst/doc/probabilistic.html |only heemod-0.2.0/heemod/inst/doc/sensitivity.R |only heemod-0.2.0/heemod/inst/doc/sensitivity.Rmd |only heemod-0.2.0/heemod/inst/doc/sensitivity.html |only heemod-0.2.0/heemod/inst/examples |only heemod-0.2.0/heemod/man/check_names.Rd |only heemod-0.2.0/heemod/man/compute_counts.Rd | 9 heemod-0.2.0/heemod/man/compute_icer.Rd |only heemod-0.2.0/heemod/man/define_correlation.Rd |only heemod-0.2.0/heemod/man/define_matrix.Rd | 21 heemod-0.2.0/heemod/man/define_model.Rd | 46 + heemod-0.2.0/heemod/man/define_multinom.Rd |only heemod-0.2.0/heemod/man/define_parameters.Rd | 51 - heemod-0.2.0/heemod/man/define_resample.Rd |only heemod-0.2.0/heemod/man/define_sensitivity.Rd |only heemod-0.2.0/heemod/man/define_state.Rd | 28 - heemod-0.2.0/heemod/man/define_state_list.Rd | 4 heemod-0.2.0/heemod/man/eval_model.Rd | 5 heemod-0.2.0/heemod/man/eval_model_newdata.Rd | 22 heemod-0.2.0/heemod/man/eval_resample.Rd |only heemod-0.2.0/heemod/man/get_frontier.Rd |only heemod-0.2.0/heemod/man/get_model.Rd |only heemod-0.2.0/heemod/man/normal.Rd |only heemod-0.2.0/heemod/man/normalize_ce.Rd |only heemod-0.2.0/heemod/man/plot.eval_model_list.Rd |only heemod-0.2.0/heemod/man/plot.eval_sensitivity.Rd |only heemod-0.2.0/heemod/man/plot.probabilistic.Rd |only heemod-0.2.0/heemod/man/run_models.Rd | 67 +- heemod-0.2.0/heemod/man/run_newdata.Rd | 64 -- heemod-0.2.0/heemod/man/run_probabilistic.Rd |only heemod-0.2.0/heemod/man/run_sensitivity.Rd |only heemod-0.2.0/heemod/man/summary.eval_model_list.Rd |only heemod-0.2.0/heemod/tests/testthat/test_matrix.R | 9 heemod-0.2.0/heemod/tests/testthat/test_model.R | 126 ++-- heemod-0.2.0/heemod/tests/testthat/test_newdata.R |only heemod-0.2.0/heemod/tests/testthat/test_parameters.R | 40 - heemod-0.2.0/heemod/tests/testthat/test_run_model.R | 64 +- heemod-0.2.0/heemod/tests/testthat/test_states.R | 32 - heemod-0.2.0/heemod/vignettes/homogeneous.Rmd |only heemod-0.2.0/heemod/vignettes/introduction.Rmd | 41 - heemod-0.2.0/heemod/vignettes/non-homogeneous.Rmd |only heemod-0.2.0/heemod/vignettes/probabilistic.Rmd |only heemod-0.2.0/heemod/vignettes/sensitivity.Rmd |only 79 files changed, 1184 insertions(+), 1256 deletions(-)