Title: R Binder for the Yhat API
Description: Deploy, maintain, and invoke models via the Yhat
REST API.
Author: Greg Lamp <greg@yhathq.com>, Brandon Hopkins <dev@yhathq.com>
Maintainer: Greg Lamp <greg@yhathq.com>
Diff between yhatr versions 0.13.9 dated 2016-02-11 and 0.13.10 dated 2016-02-12
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/yhatR.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also included.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.19 dated 2015-08-31 and 5.21 dated 2016-02-12
DESCRIPTION | 9 +++++---- MD5 | 15 ++++++++------- R/crq.R | 27 +++++++++++++++++++-------- build |only inst/ChangeLog | 3 +++ man/boot.crq.Rd | 5 +++-- man/crq.Rd | 2 +- man/rq.Rd | 1 + man/summary.crq.Rd | 22 +++++++++++----------- 9 files changed, 51 insertions(+), 33 deletions(-)
Title: Functional Programming Tools
Description: Make your pure functions purr with the 'purrr' package. This
package completes R's functional programming tools with missing features
present in other programming languages.
Author: Hadley Wickham [aut, cre],
Lionel Henry [ctb],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between purrr versions 0.2.0 dated 2016-01-04 and 0.2.1 dated 2016-02-12
DESCRIPTION | 10 ++--- MD5 | 60 +++++++++++++++--------------- NAMESPACE | 6 +++ NEWS.md |only R/at-depth.R | 2 - R/dmap.R | 2 - R/every-some.R | 4 +- R/find-position.R | 4 +- R/lmap.R | 2 - R/map.R | 40 ++++++++++---------- R/objects.R | 20 ++++++++++ R/reduce.R | 8 ++-- R/rows.R | 22 +++++++---- R/utils.R | 74 +++++++++++++++++++++++++++++--------- README.md | 2 - man/as_function.Rd | 17 +++++++- man/at_depth.Rd | 3 + man/conditional-map.Rd | 3 + man/dmap.Rd | 3 + man/map.Rd | 3 + man/map2.Rd | 3 + man/safely.Rd | 3 + man/split_by.Rd | 3 + man/type-predicates.Rd | 5 ++ src/Makevars | 3 + src/flatten.c | 2 - src/rows-data.cpp | 42 +++++++++++++-------- src/rows-data.h | 1 src/rows-formatter.cpp | 42 ++++++--------------- src/rows-formatter.h | 10 ++--- tests/testthat/test-as-function.R |only tests/testthat/test-rows.R | 26 +++++++------ 32 files changed, 260 insertions(+), 165 deletions(-)
Title: Statistical Toolbox for Sedimentary Provenance Analysis
Description: Bundles a number of established statistical methods to facilitate
the visual interpretation of large datasets in sedimentary geology. Includes
functionality for adaptive kernel density estimation, multidimensional scaling,
generalised procrustes analysis and individual differences scaling using a
variety of dissimilarity measures. Univariate provenance proxies, such as
single-grain ages or (isotopic) compositions are compared with the Kolmogorov-
Smirnov dissimilarity and Sircombe-Hazelton L2-norm. Categorical provenance
proxies, such as mineralogical, petrographic or chemical compositions are
compared with the Aitchison and Bray-Curtis distances. Also included are tools
to plot compositional data on ternary diagrams, to calculate the sample size
required for specified levels of statistical precision, and to assess the
effects of hydraulic sorting on detrital compositions. Includes an intuitive
query-based user interface for users who are not proficient in R.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between provenance versions 1.2 dated 2016-01-21 and 1.3 dated 2016-02-12
DESCRIPTION | 8 - MD5 | 10 +- R/gui.R | 238 ++++++++++++++++++++++++++-------------------------- R/plot.R | 55 +++++++++--- R/provenance.R | 4 man/plot.ternary.Rd | 14 +-- 6 files changed, 182 insertions(+), 147 deletions(-)
Title: Utilities for Using Munsell Colours
Description: Provides easy access to, and manipulation of, the Munsell
colours. Provides a mapping between Munsell's
original notation (e.g. "5R 5/10") and hexadecimal strings suitable
for use directly in R graphics. Also provides utilities
to explore slices through the Munsell colour tree, to transform
Munsell colours and display colour palettes.
Author: Charlotte Wickham <cwickham@gmail.com>
Maintainer: Charlotte Wickham <cwickham@gmail.com>
Diff between munsell versions 0.4.2 dated 2013-07-11 and 0.4.3 dated 2016-02-12
munsell-0.4.2/munsell/NEWS |only munsell-0.4.3/munsell/DESCRIPTION | 22 + munsell-0.4.3/munsell/LICENSE | 2 munsell-0.4.3/munsell/MD5 | 75 +++--- munsell-0.4.3/munsell/NAMESPACE | 7 munsell-0.4.3/munsell/NEWS.md |only munsell-0.4.3/munsell/R/alter.r | 205 +++++++++++++---- munsell-0.4.3/munsell/R/check.r | 19 - munsell-0.4.3/munsell/R/convert.r | 84 ++++++- munsell-0.4.3/munsell/R/munsell.r | 12 - munsell-0.4.3/munsell/R/plot.r | 292 +++++++++++++++---------- munsell-0.4.3/munsell/R/sysdata.rda |binary munsell-0.4.3/munsell/README.md |only munsell-0.4.3/munsell/inst/raw/getmunsellmap.R | 8 munsell-0.4.3/munsell/man/check_mnsl.Rd | 21 - munsell-0.4.3/munsell/man/chroma_slice.Rd | 20 - munsell-0.4.3/munsell/man/complement.Rd | 17 - munsell-0.4.3/munsell/man/complement_slice.Rd | 13 - munsell-0.4.3/munsell/man/darker.Rd | 19 + munsell-0.4.3/munsell/man/desaturate.Rd | 18 - munsell-0.4.3/munsell/man/fix_mnsl.Rd | 18 - munsell-0.4.3/munsell/man/hue_slice.Rd | 14 - munsell-0.4.3/munsell/man/hvc2mnsl.Rd | 39 +-- munsell-0.4.3/munsell/man/in_gamut.Rd | 22 - munsell-0.4.3/munsell/man/lighter.Rd | 21 + munsell-0.4.3/munsell/man/mnsl.Rd | 37 +-- munsell-0.4.3/munsell/man/mnsl2hvc.Rd |only munsell-0.4.3/munsell/man/mnsl_hues.Rd | 9 munsell-0.4.3/munsell/man/munsell.Rd | 11 munsell-0.4.3/munsell/man/pbgyr.Rd |only munsell-0.4.3/munsell/man/plot_closest.Rd | 25 +- munsell-0.4.3/munsell/man/plot_hex.Rd | 14 - munsell-0.4.3/munsell/man/plot_mnsl.Rd | 20 - munsell-0.4.3/munsell/man/rgb2mnsl.Rd | 19 - munsell-0.4.3/munsell/man/rygbp.Rd |only munsell-0.4.3/munsell/man/saturate.Rd | 18 - munsell-0.4.3/munsell/man/seq_mnsl.Rd | 23 + munsell-0.4.3/munsell/man/text_colour.Rd | 11 munsell-0.4.3/munsell/man/theme_munsell.Rd | 8 munsell-0.4.3/munsell/man/value_slice.Rd | 15 - munsell-0.4.3/munsell/tests |only 41 files changed, 730 insertions(+), 428 deletions(-)
Title: Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Description: Capture-mark-recapture analysis with multiple non-invasive marks. The models implemented in 'multimark' combine encounter history data arising from two different non-invasive ``marks'', such as images of left-sided and right-sided pelage patterns of bilaterally asymmetrical species, to estimate abundance and related demographic parameters while accounting for imperfect detection. Bayesian models are specified using simple formulae and fitted using Markov chain Monte Carlo. Addressing deficiencies in currently available software, 'multimark' also provides a user-friendly interface for performing Bayesian multimodel inference using capture-recapture data consisting of a single conventional mark or multiple non-invasive marks.
Author: Brett T. McClintock [aut, cre],
Acho Arnold [ctb, cph] (C original matrix library,
https://github.com/najela/matrix.h),
Barry Brown [ctb] (Fortran original ranlib library),
James Lovato [ctb] (Fortran original ranlib library),
John Burkardt [ctb] (C original ranlib library,
http://people.sc.fsu.edu/~jburkardt/c_src/ranlib),
Cleve Moler [ctb] (C original linpack library,
http://www.kkant.net/geist/ranlib/)
Maintainer: Brett T. McClintock <brett.mcclintock@noaa.gov>
Diff between multimark versions 1.3.1 dated 2015-10-21 and 1.3.2 dated 2016-02-12
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 7 +++++++ R/CJS.R | 2 +- R/Closed.R | 2 +- 5 files changed, 17 insertions(+), 10 deletions(-)
Title: Data and Functions for the Book Modern Statistical Graphics
Description: A companion to the Chinese book ``Modern Statistical Graphics''.
Author: Yihui Xie
Maintainer: Yihui Xie <xie@yihui.name>
Diff between MSG versions 0.2.2 dated 2012-08-19 and 0.3 dated 2016-02-12
MSG-0.2.2/MSG/README |only MSG-0.3/MSG/DESCRIPTION | 17 +++++------ MSG-0.3/MSG/MD5 | 56 +++++++++++++++++++-------------------- MSG-0.3/MSG/NAMESPACE | 1 MSG-0.3/MSG/NEWS | 4 ++ MSG-0.3/MSG/R/MSG-package.R | 4 ++ MSG-0.3/MSG/R/color.R | 6 +--- MSG-0.3/MSG/R/cut_plot.R | 2 - MSG-0.3/MSG/README.md |only MSG-0.3/MSG/man/BinormCircle.Rd | 14 ++++----- MSG-0.3/MSG/man/ChinaLifeEdu.Rd | 14 ++++----- MSG-0.3/MSG/man/Export.USCN.Rd | 6 ++-- MSG-0.3/MSG/man/MSG-package.Rd | 6 ++-- MSG-0.3/MSG/man/PlantCounts.Rd | 6 ++-- MSG-0.3/MSG/man/andrews_curve.Rd | 29 +++++++++----------- MSG-0.3/MSG/man/assists.Rd | 6 ++-- MSG-0.3/MSG/man/canabalt.Rd | 7 ++-- MSG-0.3/MSG/man/char_gen.Rd | 16 +++++------ MSG-0.3/MSG/man/cn_vs_us.Rd | 6 ++-- MSG-0.3/MSG/man/cut_plot.Rd | 25 +++++++---------- MSG-0.3/MSG/man/eq2010.Rd | 5 +-- MSG-0.3/MSG/man/gov.cn.pct.Rd | 40 +++++++++++++++------------ MSG-0.3/MSG/man/heart_curve.Rd | 18 ++++-------- MSG-0.3/MSG/man/murcia.Rd | 25 +++++++---------- MSG-0.3/MSG/man/music.Rd | 9 ++---- MSG-0.3/MSG/man/quake6.Rd | 12 ++++---- MSG-0.3/MSG/man/t.diff.Rd | 20 ++++++------- MSG-0.3/MSG/man/tukeyCount.Rd | 42 ++++++++++++++--------------- MSG-0.3/MSG/man/tvearn.Rd | 7 ++-- MSG-0.3/MSG/man/vec2col.Rd | 16 +++++------ 30 files changed, 205 insertions(+), 214 deletions(-)
Title: Geometric Morphometric Analysis of Monogenean Anchors
Description: Geometric morphometric and evolutionary biology analyses of anchor shape from four-anchored monogeneans.
Author: Tsung Fei Khang
Maintainer: Tsung Fei Khang <tfkhang@um.edu.my>
Diff between monogeneaGM versions 1.0 dated 2015-07-16 and 1.1 dated 2016-02-12
DESCRIPTION | 8 - MD5 | 137 +++++++++++++++--------------- NEWS |only R/Qscore.R | 2 R/anglePolygon.R | 2 R/anglecheck.R | 2 R/boxplotSort.R | 2 R/colorBar.R | 2 R/estimated_ancestral_va.R | 2 R/heatmapAnnot.R | 28 +++--- R/hsplot.R | 2 R/liewi_gpa.R | 2 R/ligophorus_shape.R | 6 - R/ligophorus_tpsdata.R | 6 - R/ligotree.R | 12 +- R/matrix2list.2.R | 2 R/matrix2list.R | 2 R/pca2d.R | 4 R/pcloadhm.R | 2 R/plotCircular.R | 2 R/plotLM.R | 2 R/polyVis.R | 2 R/procrustesFit.2.R | 18 +-- R/procrustesFit.R | 182 +++++++++++++++++----------------------- R/pwdist.R | 2 R/pwed_pd.R | 6 - R/shapeEvo.R | 2 R/spcolmap.R | 2 R/stdLM.R | 4 R/tpColorPlot2d.R | 2 R/tpColorPlot3d.R | 10 +- R/tpsRead.R | 2 R/va_mean.R | 4 data/estimated_ancestral_va.rda |binary data/liewi_gpa.rda |binary data/ligophorus_shape.rda |binary data/ligophorus_tpsdata.rda |binary data/ligotree.rda |binary data/pwed_pd.rda |binary data/va_mean.rda |binary man/Qscore.Rd | 2 man/anglePolygon.Rd | 2 man/anglecheck.Rd | 2 man/boxplotSort.Rd | 2 man/colorBar.Rd | 2 man/estimated_ancestral_va.Rd | 2 man/heatmapAnnot.Rd | 20 ++-- man/hsplot.Rd | 2 man/liewi_gpa.Rd | 2 man/ligophorus_shape.Rd | 6 - man/ligophorus_tpsdata.Rd | 6 - man/ligotree.Rd | 12 +- man/matrix2list.2.Rd | 2 man/matrix2list.Rd | 2 man/pca2d.Rd | 4 man/pcloadhm.Rd | 2 man/plotCircular.Rd | 2 man/plotLM.Rd | 2 man/polyVis.Rd | 2 man/procrustesFit.2.Rd | 15 +-- man/procrustesFit.Rd | 4 man/pwdist.Rd | 2 man/pwed_pd.Rd | 6 - man/shapeEvo.Rd | 2 man/spcolmap.Rd | 2 man/stdLM.Rd | 4 man/tpColorPlot2d.Rd | 2 man/tpColorPlot3d.Rd | 10 +- man/tpsRead.Rd | 2 man/va_mean.Rd | 4 70 files changed, 294 insertions(+), 298 deletions(-)
Title: Offers Various Swiss Maps as ggplot2 Objects
Description: Offers various swiss maps as ggplot2 objects and gives the
possibility to add layers of data on the maps. Data are publicly available
from the swiss federal statistical office.
Author: Sandro Petrillo Burri [aut, cre],
Eric Stephani [aut],
Lisa Bottinelli [ctb]
Maintainer: Sandro Petrillo Burri <gibo.gaf@gmail.com>
Diff between ggswissmaps versions 0.0.6 dated 2015-12-21 and 0.0.8 dated 2016-02-12
ggswissmaps-0.0.6/ggswissmaps/R/ggswissmaps_funs.R |only ggswissmaps-0.0.6/ggswissmaps/data/datalist |only ggswissmaps-0.0.6/ggswissmaps/data/maps.rda |only ggswissmaps-0.0.6/ggswissmaps/data/maps2.rda |only ggswissmaps-0.0.6/ggswissmaps/man/maps.Rd |only ggswissmaps-0.0.8/ggswissmaps/DESCRIPTION | 6 - ggswissmaps-0.0.8/ggswissmaps/MD5 | 27 ++---- ggswissmaps-0.0.8/ggswissmaps/NAMESPACE | 2 ggswissmaps-0.0.8/ggswissmaps/NEWS | 21 +++++ ggswissmaps-0.0.8/ggswissmaps/R/ggswissmaps_00funs.R |only ggswissmaps-0.0.8/ggswissmaps/R/ggswissmaps_data.R | 41 +++------- ggswissmaps-0.0.8/ggswissmaps/inst/doc/ggswissmaps_intro.R | 1 ggswissmaps-0.0.8/ggswissmaps/inst/doc/ggswissmaps_intro.Rmd | 1 ggswissmaps-0.0.8/ggswissmaps/inst/doc/ggswissmaps_intro.html | 13 +-- ggswissmaps-0.0.8/ggswissmaps/man/maps2.Rd | 1 ggswissmaps-0.0.8/ggswissmaps/man/maps2_.Rd |only ggswissmaps-0.0.8/ggswissmaps/man/theme_white_f.Rd | 2 ggswissmaps-0.0.8/ggswissmaps/vignettes/ggswissmaps_intro.Rmd | 1 18 files changed, 58 insertions(+), 58 deletions(-)
Title: Extensible Package for Principal-Component-Regression-Based
Integration of Base Learners
Description: Extends the base classes and methods of EnsembleBase package for Principal-Components-Regression-based (PCR) integration of base learners. Default implementation uses cross-validation error to choose the optimal number of PC components for the final predictor. The package takes advantage of the file method provided in EnsembleBase package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. Users and developers can extend the package by extending the generic methods and classes provided in EnsembleBase package as well as this package.
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani <alireza.mahani@sentrana.com>
Diff between EnsemblePCReg versions 0.6 dated 2014-11-27 and 1.0.0 dated 2016-02-12
ChangeLog |only DESCRIPTION | 14 ++++++++------ MD5 | 21 +++++++++++++-------- NAMESPACE | 6 +++++- R/aaa.R | 2 +- R/epcreg.R | 16 ++++++++++------ build |only inst |only man/epcreg.Rd | 12 +++++++++++- man/epcreg.save.Rd | 8 ++++++-- man/predict.epcreg.Rd | 4 +++- man/summary.epcreg.Rd | 1 + vignettes |only 13 files changed, 58 insertions(+), 26 deletions(-)
Title: General Purpose Hierarchical Data Structure
Description: Create tree structures from hierarchical data, and traverse
the tree in various orders. Aggregate, cumulate, print, plot, convert to and from
data.frame and more. Useful for decision trees, machine learning,
finance, conversion from and to JSON, and many other applications.
Author: Christoph Glur
Maintainer: Christoph Glur <christoph.glur@ipub.com>
Diff between data.tree versions 0.2.4 dated 2015-10-24 and 0.3.0 dated 2016-02-12
data.tree-0.2.4/data.tree/man/ClimbByAttribute.Rd |only data.tree-0.3.0/data.tree/DESCRIPTION | 23 data.tree-0.3.0/data.tree/MD5 | 186 data.tree-0.3.0/data.tree/NAMESPACE | 115 data.tree-0.3.0/data.tree/NEWS | 195 data.tree-0.3.0/data.tree/R/data.tree.R | 194 data.tree-0.3.0/data.tree/R/data_doc.R | 72 data.tree-0.3.0/data.tree/R/node.R | 758 +-- data.tree-0.3.0/data.tree/R/node_actives.R | 156 data.tree-0.3.0/data.tree/R/node_conversion.R | 142 data.tree-0.3.0/data.tree/R/node_conversion_ape.R | 260 - data.tree-0.3.0/data.tree/R/node_conversion_dataframe.R | 722 +- data.tree-0.3.0/data.tree/R/node_conversion_dendrogram.R | 258 - data.tree-0.3.0/data.tree/R/node_conversion_igraph.R | 82 data.tree-0.3.0/data.tree/R/node_conversion_list.R | 410 - data.tree-0.3.0/data.tree/R/node_methods.R | 862 +-- data.tree-0.3.0/data.tree/R/node_methods_sideeffect.R | 244 data.tree-0.3.0/data.tree/R/node_methods_traversal.R | 526 +- data.tree-0.3.0/data.tree/R/node_plot.R |only data.tree-0.3.0/data.tree/R/release.R |only data.tree-0.3.0/data.tree/R/util.R | 425 - 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Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data
artifacts are produced. Artifacts like: subsets, data aggregates, plots,
statistical models, different versions of data sets and different versions
of results. The more projects we work with the more artifacts are produced
and the harder it is to manage these artifacts. Archivist helps to store
and manage artifacts created in R. Archivist allows you to store selected
artifacts as a binary files together with their metadata and relations.
Archivist allows to share artifacts with others, either through shared
folder or github. Archivist allows to look for already created artifacts by
using it's class, name, date of the creation or other properties. Makes it
easy to restore such artifacts. Archivist allows to check if new artifact
is the exact copy that was produced some time ago. That might be useful
either for testing or caching.
Author: Przemyslaw Biecek [aut, cre],
Marcin Kosinski [aut],
Witold Chodor [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between archivist versions 1.8 dated 2015-11-27 and 2.0 dated 2016-02-12
archivist-1.8/archivist/R/archive.R |only archivist-1.8/archivist/R/cloneGithubRepo.R |only archivist-1.8/archivist/R/githubFunctions.R |only archivist-1.8/archivist/demo/archivist.r |only archivist-1.8/archivist/man/archive.Rd |only archivist-1.8/archivist/man/archivist-github-integration.Rd |only archivist-1.8/archivist/man/cloneGithubRepo.Rd |only archivist-1.8/archivist/man/deleteRepo.Rd |only archivist-1.8/archivist/man/rmFromRepo.Rd |only archivist-2.0/archivist/DESCRIPTION | 20 archivist-2.0/archivist/MD5 | 177 +-- archivist-2.0/archivist/NAMESPACE | 55 - archivist-2.0/archivist/NEWS.md | 141 +- archivist-2.0/archivist/R/Repository.R | 28 archivist-2.0/archivist/R/Tags.R | 159 +-- archivist-2.0/archivist/R/addArchivistHooks.R |only archivist-2.0/archivist/R/addTagsRepo.R | 8 archivist-2.0/archivist/R/ahistory.R | 72 - archivist-2.0/archivist/R/alink.R |only archivist-2.0/archivist/R/archivist-package.R | 17 archivist-2.0/archivist/R/archivistOptions.R | 72 - archivist-2.0/archivist/R/aread.R | 28 archivist-2.0/archivist/R/asearch.R | 104 + archivist-2.0/archivist/R/asession.R |only archivist-2.0/archivist/R/atags.R |only archivist-2.0/archivist/R/cache.R | 60 - archivist-2.0/archivist/R/copyToRepo.R | 103 - archivist-2.0/archivist/R/createEmptyRepo.R | 296 ----- archivist-2.0/archivist/R/createMDGallery.R |only archivist-2.0/archivist/R/deleteRepo.R | 134 -- archivist-2.0/archivist/R/extractData.R | 139 ++ archivist-2.0/archivist/R/extractMiniature.R | 23 archivist-2.0/archivist/R/extractTags.R | 157 ++ archivist-2.0/archivist/R/getRemoteHook.R |only archivist-2.0/archivist/R/getTags.R | 77 - archivist-2.0/archivist/R/loadFromRepo.R | 218 +--- archivist-2.0/archivist/R/magrittr.R | 6 archivist-2.0/archivist/R/md5hash.R | 18 archivist-2.0/archivist/R/rmFromRepo.R | 87 - archivist-2.0/archivist/R/saveToRepo.R | 530 ++-------- archivist-2.0/archivist/R/searchInRepo.R | 286 ++--- archivist-2.0/archivist/R/setRepo.R | 183 +-- archivist-2.0/archivist/R/shinySearchInLocalRepo.R | 27 archivist-2.0/archivist/R/showRepo.R | 184 --- archivist-2.0/archivist/R/splitTags.R | 132 -- archivist-2.0/archivist/R/summaryRepo.R | 157 -- archivist-2.0/archivist/R/zipRepo.R | 76 - archivist-2.0/archivist/R/zzz.R | 49 archivist-2.0/archivist/demo/00Index | 1 archivist-2.0/archivist/demo/archivist_jss.r | 108 +- archivist-2.0/archivist/inst/CITATION | 4 archivist-2.0/archivist/inst/graphGallery |only archivist-2.0/archivist/man/Repository.Rd | 84 - archivist-2.0/archivist/man/Tags.Rd | 246 ++-- archivist-2.0/archivist/man/addHooksToPrint.Rd |only archivist-2.0/archivist/man/addTagsRepo.Rd | 71 - archivist-2.0/archivist/man/aformat.Rd |only archivist-2.0/archivist/man/ahistory.Rd | 115 +- archivist-2.0/archivist/man/alink.Rd |only archivist-2.0/archivist/man/archivist-package.Rd | 66 - archivist-2.0/archivist/man/archivistOptions.Rd | 123 +- archivist-2.0/archivist/man/aread.Rd | 76 - archivist-2.0/archivist/man/asearch.Rd | 143 +- archivist-2.0/archivist/man/asession.Rd |only archivist-2.0/archivist/man/cache.Rd | 118 +- archivist-2.0/archivist/man/copyToRepo.Rd | 134 +- archivist-2.0/archivist/man/createEmptyRepo.Rd | 234 +--- archivist-2.0/archivist/man/createMDGallery.Rd |only archivist-2.0/archivist/man/deleteLocalRepo.Rd |only archivist-2.0/archivist/man/getRemoteHook.Rd |only archivist-2.0/archivist/man/getTags.Rd | 206 +-- archivist-2.0/archivist/man/loadFromRepo.Rd | 257 +--- archivist-2.0/archivist/man/magrittr.Rd | 66 - archivist-2.0/archivist/man/md5hash.Rd | 82 - archivist-2.0/archivist/man/pipe.Rd | 2 archivist-2.0/archivist/man/rmFromLocalRepo.Rd |only archivist-2.0/archivist/man/saveToRepo.Rd | 282 +---- archivist-2.0/archivist/man/searchInRepo.Rd | 295 ++--- archivist-2.0/archivist/man/setRepo.Rd | 234 +--- archivist-2.0/archivist/man/shinySearchInRepo.Rd | 84 - archivist-2.0/archivist/man/showRepo.Rd | 241 +--- archivist-2.0/archivist/man/splitTags.Rd | 141 -- archivist-2.0/archivist/man/summaryRepo.Rd | 175 --- archivist-2.0/archivist/man/zipRepo.Rd | 163 +-- archivist-2.0/archivist/tests/testthat/test_aoptions.R | 4 archivist-2.0/archivist/tests/testthat/test_base_functionalities.R | 9 archivist-2.0/archivist/tests/testthat/test_createMD.R |only archivist-2.0/archivist/tests/testthat/test_jss_artilce.R | 70 - archivist-2.0/archivist/tests/testthat/test_splitTags.R | 6 archivist-2.0/archivist/tests/testthat/test_zip.R | 18 90 files changed, 3317 insertions(+), 4364 deletions(-)
More information about wrswoR.benchmark at CRAN
Permanent link
Title: Distance Measures for Time Series Data
Description: A set of commonly used distance measures and some additional functions which, although initially not designed for this purpose, can be used to measure the dissimilarity between time series. These measures can be used to perform clustering, classification or other data mining tasks which require the definition of a distance measure between time series.
Author: Usue Mori, Alexander Mendiburu, J.A. Lozano
Maintainer: Usue Mori <usue.mori@ehu.es>
Diff between TSdist versions 3.1 dated 2015-07-14 and 3.2 dated 2016-02-12
DESCRIPTION | 8 +- MD5 | 78 +++++++++---------- NAMESPACE | 2 inst/doc/README.pdf |binary inst/tests/test.frechet.R | 2 man/ACFDistance.Rd | 6 + man/ARLPCCepsDistance.Rd | 3 man/ARMahDistance.Rd | 1 man/ARPicDistance.Rd | 3 man/CCorDistance.Rd | 180 +++++++++++++++++++++++----------------------- man/CDMDistance.Rd | 1 man/CIDDistance.Rd | 153 +++++++++++++++++++-------------------- man/CorDistance.Rd | 4 + man/CortDistance.Rd | 4 + man/DTWDistance.Rd | 11 ++ man/DissimDistance.Rd | 3 man/EDRDistance.Rd | 14 +++ man/ERPDistance.Rd | 3 man/EuclideanDistance.Rd | 1 man/FourierDistance.Rd | 1 man/FrechetDistance.Rd | 5 + man/InfNormDistance.Rd | 2 man/IntPerDistance.Rd | 1 man/LBKeoghDistance.Rd | 3 man/LCSSDistance.Rd | 14 +++ man/LPDistance.Rd | 2 man/ManhattanDistance.Rd | 2 man/MindistSaxDistance.Rd | 169 +++++++++++++++++++++---------------------- man/MinkowskiDistance.Rd | 2 man/NCDDistance.Rd | 1 man/PACFDistance.Rd | 2 man/PDCDistance.Rd | 6 + man/PerDistance.Rd | 1 man/PredDistance.Rd | 1 man/STSDistance.Rd | 2 man/SpecGLKDistance.Rd | 2 man/SpecISDDistance.Rd | 1 man/SpecLLRDistance.Rd | 1 man/TquestDistance.Rd | 4 - man/WavDistance.Rd | 2 40 files changed, 399 insertions(+), 302 deletions(-)
Title: Directional Statistics
Description: A collection of R functions for directional data analysis.
Author: Michail Tsagris, Giorgos Athineou
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Directional versions 1.7 dated 2016-01-27 and 1.7.5 dated 2016-02-12
DESCRIPTION | 9 ++++----- MD5 | 10 ++++++---- NAMESPACE | 2 +- R/acg.R |only R/vmkde.tune_2.R | 8 ++++---- man/acg.Rd |only man/rfb.Rd | 10 +++++++++- 7 files changed, 24 insertions(+), 15 deletions(-)
Title: Thematic Cartography
Description: Create and integrate maps in your R workflow. This package allows
various cartographic representations such as proportional symbols, chroropleth,
typology, flows, discontinuities. In addition it also proposes some additional useful
features as cartographic palettes, layout (scale, north arrow, title...), labels,
legends, access to cartographic API to ease the graphic presentation of maps.
Author: Timothée Giraud [cre, aut],
Nicolas Lambert [aut]
Maintainer: Timothée Giraud <timothee.giraud@ums-riate.fr>
Diff between cartography versions 1.1 dated 2015-11-18 and 1.2 dated 2016-02-12
DESCRIPTION | 20 +- MD5 | 68 +++++---- NAMESPACE | 1 NEWS | 25 ++- R/Package.R | 4 R/choro.R | 2 R/choroLayer.R | 4 R/circles.R |only R/data.R | 2 R/discLayer.R | 18 +- R/getBorders.R | 3 R/getFigDim.R |only R/getTiles.R | 85 ++++------- R/layoutLayer.R | 30 ++-- R/propSymbolsChoroLayer.R | 261 +++++++++++++++++++---------------- R/propSymbolsChoroLayer2.R |only R/propSymbolsLayer.R | 277 +++++++++++++++++++------------------- R/propSymbolsLayer2.R |only R/propSymbolsTypoLayer.R | 313 +++++++++++++++++++++---------------------- R/propSymbolsTypoLayer2.R |only R/tilesLayer.R | 43 +++-- README.md | 11 + data/nuts2006.RData |binary inst/doc/cartography.R | 10 - inst/doc/cartography.Rmd | 12 - inst/doc/cartography.html | 34 ++-- man/cartography.Rd | 4 man/discLayer.Rd | 3 man/getBorders.Rd | 3 man/getFigDim.Rd |only man/getTiles.Rd | 35 ++-- man/graticule.spdf.Rd | 2 man/layoutLayer.Rd | 3 man/propSymbolsChoroLayer.Rd | 30 ++-- man/propSymbolsLayer.Rd | 60 ++++---- man/propSymbolsTypoLayer.Rd | 53 ++++--- man/tilesLayer.Rd | 20 +- vignettes/cartography.Rmd | 12 - 38 files changed, 771 insertions(+), 677 deletions(-)
Title: Tools for Simulation Studies in Parallel
Description: Tools for setting up ("design"), conducting, and evaluating
large-scale simulation studies with graphics and tables, including
parallel computations.
Author: Marius Hofert and Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between simsalapar versions 1.0-8 dated 2016-01-02 and 1.0-9 dated 2016-02-12
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- build |only inst/CITATION |only man/simsalapar-package.Rd | 14 ++++++++++++-- 5 files changed, 20 insertions(+), 8 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression are covered in
this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>
Diff between sdcTable versions 0.20.1 dated 2015-12-11 and 0.20.3 dated 2016-02-12
DESCRIPTION | 9 +- MD5 | 116 ++++++++++++++++++------------------- NAMESPACE | 2 R/export_functions.r | 6 + R/methods_class_dimVar.r | 4 - R/methods_multiple_classes.r | 8 ++ build/vignette.rds |binary inst/doc/sdcTable.pdf |binary man/attack.Rd | 2 man/calc.cutList-method.Rd | 2 man/calc.dimVar-method.Rd | 2 man/calc.linProb-method.Rd | 2 man/calc.multiple-method.Rd | 2 man/calc.problemInstance-method.Rd | 2 man/calc.sdcProblem-method.Rd | 2 man/calc.simpleTriplet-method.Rd | 2 man/cellInfo.Rd | 3 man/changeCellStatus.Rd | 3 man/cutList-class.Rd | 2 man/dataObj-class.Rd | 2 man/dimInfo-class.Rd | 2 man/dimVar-class.Rd | 2 man/get.cutList-method.Rd | 2 man/get.dataObj-method.Rd | 2 man/get.dimInfo-method.Rd | 2 man/get.dimVar-method.Rd | 2 man/get.linProb-method.Rd | 2 man/get.problemInstance-method.Rd | 2 man/get.safeObj-method.Rd | 2 man/get.sdcProblem-method.Rd | 2 man/get.simpleTriplet-method.Rd | 2 man/getInfo.Rd | 2 man/init.cutList-method.Rd | 2 man/init.dataObj-method.Rd | 2 man/init.dimVar-method.Rd | 2 man/init.simpleTriplet-method.Rd | 2 man/linProb-class.Rd | 2 man/makeProblem.Rd | 2 man/microData1.Rd | 2 man/microData2.Rd | 2 man/primarySuppression.Rd | 3 man/print-method.Rd | 2 man/problem.Rd | 2 man/problemInstance-class.Rd | 2 man/problemWithSupps.Rd | 2 man/protectLinkedTables.Rd | 3 man/protectTable.Rd | 2 man/protectedData.Rd | 2 man/safeObj-class.Rd | 2 man/sdcProblem-class.Rd | 2 man/set.cutList-method.Rd | 2 man/set.dataObj-method.Rd | 2 man/set.dimInfo-method.Rd | 2 man/set.linProb-method.Rd | 2 man/set.problemInstance-method.Rd | 2 man/set.sdcProblem-method.Rd | 2 man/setInfo.Rd | 8 ++ man/simpleTriplet-class.Rd | 2 man/summary-method.Rd | 2 59 files changed, 141 insertions(+), 116 deletions(-)
Title: Statistical Depth Functions for Multivariate Analysis
Description: Data depth concept offers a variety of powerful and user friendly tools for robust exploration and inference for multivariate data. The offered techniques may be successfully used in cases of lack of our knowledge on parametric models generating data due to their nonparametric nature. The package consist of among others implementations of several data depth techniques involving multivariate quantile-quantile plots, multivariate scatter estimators, multivariate Wilcoxon tests and robust regressions.
Author: Daniel Kosiorowski, Mateusz Bocian, Anna Wegrzynkiewicz and Zygmunt
Zawadzki from Cracow University of Economics.
Maintainer: Zygmunt Zawadzki <zawadzkizygmunt@gmail.com>
Diff between DepthProc versions 1.0.3 dated 2014-11-11 and 1.0.7 dated 2016-02-12
DESCRIPTION | 14 +- MD5 | 18 +-- NAMESPACE | 136 +++++++++++++------------- R/DepthCurveClass.R | 238 ++++++++++++++++++++++----------------------- data/USLABOUR.rda |binary data/inf.mort.rda |binary data/maesles.imm.rda |binary data/under5.mort.rda |binary src/RcppExports.cpp | 260 +++++++++++++++++++------------------------------- src/RobCovLibConfig.h | 2 10 files changed, 310 insertions(+), 358 deletions(-)
Title: Gene Enrichment Analysis from ACSN Maps or GMT Files
Description: Compute and represent gene set enrichment or depletion from your data based on pre-saved maps from the Atlas of Cancer Signalling Networks (ACSN) or user imported maps.
User imported maps must be complying with the GMT format as defined by the Broad Institute, that is to say that the file should be tab-separated, that the first column should contain the module name, the second column can contain comments that will be overwritten with the number of genes in the module, and subsequent columns must contain the list of genes (HUGO symbols; tab-separated) inside the module.
The gene set enrichment can be run with hypergeometric test or Fisher exact test, and can use multiple corrections.
Visualization of data can be done either by barplots or heatmaps.
Author: Paul Deveau [aut, cre],
Eric Bonnet [aut]
Maintainer: Paul Deveau <paul.deveau@curie.fr>
Diff between ACSNMineR versions 0.15.11 dated 2015-11-24 and 0.16.01.29 dated 2016-02-12
DESCRIPTION | 17 +-- MD5 | 45 +++++---- NAMESPACE | 3 R/ACSN_Enrichment.R | 97 +++++++++++++++++--- README.md | 194 ++++++++++++++++++++-------------------- build/vignette.rds |binary data/ACSN_maps.rda |binary data/enrichment_test.rda |binary inst/doc/ACSN-vignette.R | 2 inst/doc/ACSN-vignette.Rmd | 2 inst/doc/ACSN-vignette.html | 137 +++++++++++++++------------- inst/doc/ACSN_map_updating.R |only inst/doc/ACSN_map_updating.Rmd |only inst/doc/ACSN_map_updating.html |only man/ACSN_maps.Rd | 46 ++++----- man/cnum.Rd | 30 +++--- man/enrichment.Rd | 10 +- man/enrichment_test.Rd | 42 ++++---- man/format_from_gmt.Rd | 42 ++++---- man/genes_test.Rd | 30 +++--- man/multisample_enrichment.Rd | 3 man/p.val.calc.Rd | 50 +++++----- man/represent_enrichment.Rd | 72 +++++++------- man/reverselog_trans.Rd |only vignettes/ACSN-vignette.Rmd | 2 vignettes/ACSN_map_updating.Rmd |only 26 files changed, 461 insertions(+), 363 deletions(-)
Title: Weighting and Weighted Statistics
Description: Provides a variety of functions for producing simple weighted statistics, such as weighted Pearson's correlations, partial correlations, Chi-Squared statistics, histograms, and t-tests. Also now includes some software for quickly recoding survey data and plotting point estimates from interaction terms in regressions (and multiply imputed regressions). Future versions of the package will be more closely integrated with "anesrake" and additional weighting tools and will provide the option to find weighting benchmarks and weight data using a variety of methodologies. NOTE: Weighted partial correlation calculations temporarily pulled to address a bug.
Author: Josh Pasek, with some assistance from Alex Tahk and some code modified from R-core; Additional contributions by Gene Culter and Marcus Schwemmle.
Maintainer: Josh Pasek <josh@joshpasek.com>
Diff between weights versions 0.80 dated 2014-03-04 and 0.85 dated 2016-02-12
DESCRIPTION | 12 +-- MD5 | 28 ++++--- NAMESPACE | 11 ++ R/findwtdinteraction.R |only R/findwtdinteraction.default.R |only R/findwtdinteraction.mira.R |only R/plotinteractpreds.R |only R/plotwtdinteraction.R |only R/wpct.r | 4 - R/wtd.chi.sq.r | 4 - R/wtd.cor.r | 77 ++++++++++++++----- R/wtd.t.test.r | 160 +++++++++++++++++++++++++---------------- man/nalevs.Rd | 3 man/plotwtdinteraction.Rd |only man/wpct.Rd | 5 + man/wtd.chi.sq.Rd | 8 +- man/wtd.cor.Rd | 19 ++++ man/wtd.t.test.Rd | 23 +++++ 18 files changed, 244 insertions(+), 110 deletions(-)
Title: Demonstrations for Teaching and Learning
Description: Demonstration functions that can be used in a classroom to demonstrate statistical concepts, or on your own to better understand the concepts or the programming.
Author: Greg Snow
Maintainer: Greg Snow <538280@gmail.com>
Diff between TeachingDemos versions 2.9 dated 2013-08-29 and 2.10 dated 2016-02-12
DESCRIPTION | 26 +--- MD5 | 250 ++++++++++++++++++++++--------------------- NAMESPACE | 28 ++++ NEWS | 13 ++ R/00vars.R | 1 R/HWidentify.R | 32 +---- R/R2txt.R | 9 - R/TkApprox.R | 43 +++---- R/TkBuildDist.R | 74 ++++++------ R/TkListView.R | 236 ++++++++++++++++++++++------------------ R/TkSpline.R | 74 ++++++------ R/dice.R | 1 R/digits.R |only R/dynIdentify.R | 26 ++-- R/fagan.R | 220 ++++++++++++++++++------------------- R/flip.rgl.coin.R | 2 R/lattice.demo.R | 66 +++++------ R/limits.g.R |only R/manipulate.cor.examp.R |only R/mle.demo.R | 37 +++--- R/mysymbols.R | 3 R/panel.dice.R | 4 R/panel.mysymbols.R | 8 - R/plot.dice.R | 10 - R/plot.rgl.coin.R | 16 +- R/plot.rgl.die.R | 28 ++-- R/plot2script.R | 17 ++ R/rgl.Map.R | 18 +-- R/roc.demo.R | 24 ++-- R/roll.rgl.die.R | 14 +- R/rotate.cloud.R | 70 ++++++------ R/rotate.persp.R | 2 R/rotate.wireframe.R | 73 ++++++------ R/run.ci.examp.R | 2 R/run.cor.examp.R | 62 +++++----- R/run.cor2.examp.R | 92 +++++++-------- R/run.hist.demo.R | 29 ++++ R/run.old.cor.examp.R | 2 R/run.old.cor2.examp.R | 2 R/run.power.examp.R | 150 ++++++++++++------------- R/slider.R | 40 +++--- R/sliderv.R | 26 ++-- R/subplot.R | 2 R/tdspinner.R | 4 R/tkBrush.R | 60 +++++----- R/tkexamp.R | 248 +++++++++++++++++++++--------------------- R/triplot.R | 30 ++--- R/vis.binom.R | 60 +++++----- R/vis.boxcox.R | 88 +++++++-------- R/vis.boxcoxu.R | 86 +++++++------- R/vis.gamma.R | 186 +++++++++++++++---------------- R/vis.normal.R | 98 ++++++++-------- R/vis.t.R | 80 ++++++------- R/z.test.R | 9 - data/USCrimes.rda |binary data/coin.faces.rda |binary data/evap.rda |binary data/gps.rda |binary data/ldsgrowth.rda |binary data/outliers.rda |binary data/steps.rda |only data/stork.rda |binary man/HWidentify.Rd | 5 man/Pvalue.sim.Rd | 2 man/R2txt.Rd | 2 man/SensSpec.demo.Rd | 2 man/TeachingDemos-package.Rd | 2 man/TkApprox.Rd | 7 - man/TkBuildDist.Rd | 6 - man/TkListView.Rd | 7 - man/TkPredict.Rd | 2 man/TkSpline.Rd | 2 man/bct.Rd | 2 man/cal.Rd | 2 man/char2seed.Rd | 2 man/chisq.detail.Rd | 2 man/ci.examp.Rd | 6 - man/clipplot.Rd | 2 man/clt.examp.Rd | 2 man/cnvrt.coords.Rd | 2 man/col2grey.Rd | 2 man/correct.Rd | 29 +++- man/cortest.Rd | 2 man/dice.Rd | 2 man/digits.Rd |only man/dots.Rd | 2 man/dynIdentify.Rd | 9 + man/faces2.Rd | 4 man/fagan.Rd | 2 man/gp.open.Rd | 5 man/hpd.Rd | 2 man/ineq.Rd | 2 man/lattice.demo.Rd | 2 man/loess.demo.Rd | 9 - man/mle.demo.Rd | 5 man/ms.polygram.Rd | 2 man/mysymbols.Rd | 2 man/normtest.Rd | 2 man/pairs2.Rd | 2 man/panel.mysymbols.Rd | 2 man/petals.Rd | 2 man/plot.rgl.coin.Rd | 6 - man/plot2script.Rd | 2 man/power.examp.Rd | 2 man/put.points.demo.Rd | 6 - man/rgl.Map.Rd | 2 man/roc.demo.Rd | 2 man/rotate.cloud.Rd | 2 man/run.cor.examp.Rd | 2 man/run.hist.demo.Rd | 2 man/shadowtext.Rd | 5 man/sigma.test.Rd | 11 + man/simfun.Rd | 88 +++++++++++---- man/slider.Rd | 4 man/sliderv.Rd | 5 man/spread.labs.Rd | 2 man/squishplot.Rd | 2 man/steps.Rd |only man/subplot.Rd | 19 +-- man/tkBrush.Rd | 2 man/tkexamp.Rd | 2 man/tree.demo.Rd | 2 man/triplot.Rd | 8 - man/updateusr.Rd | 2 man/vis.binom.Rd | 2 man/vis.boxcox.Rd | 2 man/vis.test.Rd | 4 man/z.test.Rd | 10 + man/zoomplot.Rd | 10 + 129 files changed, 1656 insertions(+), 1477 deletions(-)
Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Description: Efficient approximate leave-one-out cross-validation (LOO)
using Pareto smoothed importance sampling (PSIS), a new procedure for
regularizing importance weights. As a byproduct of the calculations, we also
obtain approximate standard errors for estimated predictive errors, and for
the comparison of predictive errors between models. We also compute the
widely applicable information criterion (WAIC).
Author: Aki Vehtari [aut],
Andrew Gelman [aut],
Jonah Gabry [cre, aut],
Juho Piironen [ctb],
Ben Goodrich [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between loo versions 0.1.4 dated 2015-12-10 and 0.1.5 dated 2016-02-12
DESCRIPTION | 8 +- MD5 | 48 ++++++++-------- R/compare.R | 41 +++++++------- R/extract_log_lik.R | 12 ++-- R/gpdfit.R | 2 R/helpers.R | 48 ++++++++++++---- R/loo.R | 23 +++++++- R/loo_package.R | 16 ++--- R/print.R | 14 ++-- R/psislw.R | 4 - build/vignette.rds |binary inst/CITATION | 25 ++++++-- inst/doc/Example.R | 45 +++++++++++---- inst/doc/Example.Rmd | 50 ++++++++--------- inst/doc/Example.html | 106 ++++++++++++++++++++++--------------- man/compare.Rd | 24 +++++--- man/extract_log_lik.Rd | 8 +- man/loo-package.Rd | 24 +++----- man/loo.Rd | 22 ++++++- man/nlist.Rd | 3 + man/psislw.Rd | 6 +- tests/testthat/test_compare.R | 32 +++++++++-- tests/testthat/test_loo_and_waic.R | 4 + tests/testthat/test_print_plot.R | 31 +++++++++- vignettes/Example.Rmd | 50 ++++++++--------- 25 files changed, 410 insertions(+), 236 deletions(-)
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Author: Douglas Bates [aut],
Martin Maechler [aut],
Ben Bolker [aut, cre],
Steven Walker [aut],
Rune Haubo Bojesen Christensen [ctb],
Henrik Singmann [ctb],
Bin Dai [ctb],
Gabor Grothendieck [ctb],
Peter Green [ctb]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 1.1-10 dated 2015-10-06 and 1.1-11 dated 2016-02-12
lme4-1.1-10/lme4/inst/tests |only lme4-1.1-11/lme4/DESCRIPTION | 29 +++++---- lme4-1.1-11/lme4/MD5 | 102 +++++++++++++++++---------------- lme4-1.1-11/lme4/R/lmList.R | 93 ++++++++++++++++++++---------- lme4-1.1-11/lme4/R/lmer.R | 56 ++++++++++++------ lme4-1.1-11/lme4/R/modular.R | 13 ++-- lme4-1.1-11/lme4/R/nbinom.R | 37 +++++++++-- lme4-1.1-11/lme4/R/plot.R | 2 lme4-1.1-11/lme4/R/predict.R | 52 ++++++++++------ lme4-1.1-11/lme4/R/utilities.R | 59 +++++++++++-------- lme4-1.1-11/lme4/README.md | 15 +++- lme4-1.1-11/lme4/inst/NEWS.Rd | 21 ++++++ lme4-1.1-11/lme4/man/VarCorr.Rd | 28 +++++---- lme4-1.1-11/lme4/man/glmer.Rd | 5 - lme4-1.1-11/lme4/man/glmer.nb.Rd | 5 - lme4-1.1-11/lme4/man/lmList.Rd | 4 - lme4-1.1-11/lme4/man/lmer.Rd | 27 +++++--- lme4-1.1-11/lme4/man/merMod-class.Rd | 5 - lme4-1.1-11/lme4/man/predict.merMod.Rd | 6 - lme4-1.1-11/lme4/man/sigma.Rd | 8 +- lme4-1.1-11/lme4/man/utilities.Rd | 37 ++++++++--- lme4-1.1-11/lme4/tests/AAAtest-all.R | 2 lme4-1.1-11/lme4/tests/lmList-tst.R | 55 +++++++++++++++-- lme4-1.1-11/lme4/tests/offset.Rout |only lme4-1.1-11/lme4/tests/predict.R | 13 ++++ lme4-1.1-11/lme4/tests/predict.Rout | 32 ++++++---- lme4-1.1-11/lme4/tests/testthat |only lme4-1.1-11/lme4/vignettes/lmer.Rnw | 1 28 files changed, 468 insertions(+), 239 deletions(-)
Title: Fuzzy Cognitive Mapping
Description: Provides several functions to create and manipulate fuzzy
cognitive maps. It is based on 'FCMapper' for Excel, distributed at <http://
www.fcmappers.net/joomla/>, developed by Michael Bachhofer and Martin Wildenberg.
Maps are inputted as adjacency matrices. Attributes of the maps and the
equilibrium values of the concepts (including with user-defined constrained
values) can be calculated. The maps can be graphed with a function that calls
'igraph'. Multiple maps with shared concepts can be aggregated.
Author: Shaun Turney and Michael Bachhofer
Maintainer: Shaun Turney <shaun.turney@mail.mcgill.ca>
Diff between FCMapper versions 1.0 dated 2015-02-05 and 1.1 dated 2016-02-12
DESCRIPTION | 15 +++++++++++---- MD5 | 6 +++--- NAMESPACE | 1 - R/FCMapper.R | 37 ++++++++++++++++++------------------- 4 files changed, 32 insertions(+), 27 deletions(-)