Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from
several federated data sources (mainly sources maintained by the US Federal
government). Currently, the package allows for retrieval of five datasets:
The National Elevation Dataset digital elevation models (1 and 1/3 arc-second;
USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic
(SSURGO) database from the National Cooperative Soil Survey (NCSS), which is
led by the Natural Resources Conservation Service (NRCS) under the USDA; the
Global Historical Climatology Network (GHCN), coordinated by National Climatic
Data Center at NOAA; and the International Tree Ring Data Bank. Additional
data sources are in the works, including global DEM resources (ETOPO1, ETOPO5,
ETOPO30, SRTM), global soils (HWSD), MODIS satellite data products, the National
Atlas (US), Natural Earth, PRISM, and WorldClim.
Author: R. Kyle Bocinsky [aut, cre], Dylan Beaudette [ctb], Scott Chamberlain [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 2.0.4 dated 2016-01-28 and 2.0.5 dated 2016-02-14
FedData-2.0.4/FedData/man/curl_download.Rd |only FedData-2.0.5/FedData/DESCRIPTION | 15 +++---- FedData-2.0.5/FedData/MD5 | 18 ++++---- FedData-2.0.5/FedData/NAMESPACE | 2 FedData-2.0.5/FedData/R/GHCN_FUNCTIONS.R | 6 +- FedData-2.0.5/FedData/R/ITRDB_FUNCTIONS.R | 16 ++++++- FedData-2.0.5/FedData/R/NED_FUNCTIONS.R | 2 FedData-2.0.5/FedData/R/NHD_FUNCTIONS.R | 4 - FedData-2.0.5/FedData/R/SSURGO_FUNCTIONS.R | 15 ++++--- FedData-2.0.5/FedData/R/UTILITY_FUNCTIONS.R | 57 +++++++++++----------------- FedData-2.0.5/FedData/man/download_data.Rd |only 11 files changed, 70 insertions(+), 65 deletions(-)
Title: Fast Implementation of the Iterative Proportional Fitting
Procedure in C
Description: A fast (C) implementation of the iterative proportional fitting
procedure. Based on corresponding code from the networkTomography package.
Author: Alexander W Blocker
Maintainer: Alexander W Blocker <ablocker@gmail.com>
Diff between ipfp versions 1.0 dated 2013-07-09 and 1.0.1 dated 2016-02-14
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NAMESPACE | 2 ++ R/ipfp.R | 20 ++++++++++---------- man/ipfp.Rd | 36 +++++++++++++++++------------------- src/Makevars.win | 8 ++++---- 6 files changed, 44 insertions(+), 43 deletions(-)
Title: Chi-Square and Exact Tests for Non-Parametric Functional
Dependencies
Description: Statistical hypothesis testing methods for non-parametric functional dependencies based on asymptotic chi-square and exact statistics. These tests were designed to reveal evidence for causality based on functional dependencies. They include asymptotic functional chi-square tests, an exact functional test, a comparative functional chi-square test, and also a comparative chi-square test. The normalized non-constant functional chi-square test was used by the Best Performer NMSUSongLab in HPN-DREAM (DREAM8) Breast Cancer Network Inference Challenges. These tests offer an advantage over regression analysis when a parametric functional form cannot be assumed.
Author: Yang Zhang, Hua Zhong, and Joe Song
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between FunChisq versions 2.2.1 dated 2016-01-25 and 2.2.2 dated 2016-02-14
DESCRIPTION | 8 +-- MD5 | 18 +++--- NEWS | 41 +++++++++++---- R/CPChisq.R | 81 ++++++++++++++++--------------- R/FunChisq.R | 106 ++++++++++++++++++++++++++--------------- man/FunChisq-package.Rd | 4 - man/cp.chisq.test.Rd | 19 ++++--- man/cp.fun.chisq.test.Rd | 14 +++-- man/fun.chisq.test.Rd | 36 ++++++++----- tests/testthat/test_FunChisq.R | 79 ++++++++++++++++++++---------- 10 files changed, 250 insertions(+), 156 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-13 1.0.2
2014-05-08 1.0.1
Title: Implementation of gWidgets2 for the RGtk2 Package
Description: Implements the 'gWidgets2' API for 'RGtk2.'
Author: John Verzani
Maintainer: John Verzani <jverzani@gmail.com>
Diff between gWidgets2RGtk2 versions 1.0-3 dated 2015-02-17 and 1.0-4 dated 2016-02-14
DESCRIPTION | 12 - MD5 | 95 +++++------ NAMESPACE | 3 R/GWidget.R | 16 + R/aaa.R |only R/dialogs.R | 33 ++-- R/gaction.R | 3 R/gbutton.R | 4 R/gcalendar.R | 3 R/gcheckbox.R | 3 R/gcheckboxgroup.R | 10 - R/gcombobox.R | 9 - R/gdf.R | 26 ++- R/gedit.R | 6 R/gexpandgroup.R | 2 R/gfile.R | 5 R/gformlayout.R | 8 R/gframe.R | 3 R/ggraphics.R | 7 R/ggroup.R | 5 R/gimage.R | 3 R/glabel.R | 3 R/glayout.R | 3 R/gmenu.R | 3 R/gnotebook.R | 3 R/gpanedgroup.R | 3 R/gprogressbar.R | 3 R/gradio.R | 3 R/gseparator.R | 3 R/gslider.R | 3 R/gspinbutton.R | 3 R/gstackwidget.R | 3 R/gstatusbar.R | 3 R/gtable.R | 3 R/gtext.R | 3 R/gtimer.R | 5 R/gtk-misc.R | 6 R/gtoolbar.R | 3 R/gtree.R | 5 R/gvarbrowser.R | 3 R/gwindow.R | 3 R/icons.R | 9 - man/add_editable_cell_renderer.Rd | 3 man/ensure_type.Rd | 3 man/gWidgets2RGtk2-package.Rd | 80 ++++----- man/gWidgets2RGtk2-undocumented.Rd | 294 +++++++++++++++--------------------- man/guiWidgetsToolkitRGtk2-class.Rd | 3 man/isFirstMouseClick.Rd | 3 man/isRightMouseClick.Rd | 3 49 files changed, 345 insertions(+), 376 deletions(-)
More information about gWidgets2RGtk2 at CRAN
Permanent link
Title: R Wrapper for the 'Bit.ly', 'Goo.gl' and 'Is.gd' URL Shortening
Services
Description: Allows using different URL shortening services, which also provide
expanding and analytic functions. Specifically developed for 'Bit.ly', 'Goo.gl'
(both OAuth2) and 'is.gd' (no API key). Others can be added by request.
Author: John Malc [aut, cre] (@dmpe)
Maintainer: John Malc <cincenko@outlook.com>
Diff between urlshorteneR versions 0.8.8 dated 2015-11-21 and 0.9.2 dated 2016-02-14
urlshorteneR-0.8.8/urlshorteneR/tests/testthat/bitly_token.rds |only urlshorteneR-0.8.8/urlshorteneR/tests/testthat/googl_token.rds |only urlshorteneR-0.9.2/urlshorteneR/DESCRIPTION | 22 +++--- urlshorteneR-0.9.2/urlshorteneR/MD5 | 24 +++---- urlshorteneR-0.9.2/urlshorteneR/NEWS | 4 + urlshorteneR-0.9.2/urlshorteneR/R/ApiKey.R | 34 ++++++---- urlshorteneR-0.9.2/urlshorteneR/R/bitly_links.R | 4 - urlshorteneR-0.9.2/urlshorteneR/R/googl_links.R | 2 urlshorteneR-0.9.2/urlshorteneR/R/zzz.R |only urlshorteneR-0.9.2/urlshorteneR/build/vignette.rds |binary urlshorteneR-0.9.2/urlshorteneR/man/bitly_LinksShorten.Rd | 3 urlshorteneR-0.9.2/urlshorteneR/man/googl_LinksExpand.Rd | 2 urlshorteneR-0.9.2/urlshorteneR/man/googl_auth.Rd | 8 +- urlshorteneR-0.9.2/urlshorteneR/tests/testthat/test-GitHubIssue9.R |only urlshorteneR-0.9.2/urlshorteneR/vignettes/Tutorial.Rmd | 28 +++++++- 15 files changed, 85 insertions(+), 46 deletions(-)
Title: Tools for Visualization of Interdependent Data Quality Issues
Description: Data quality issues such as missing values and outliers are often
interdependent, which makes preprocessing both time-consuming and leads to
suboptimal performance in knowledge discovery tasks. This package supports
preprocessing decision making by visualizing interdependent data quality issues
through means of feature construction. The user can define his own application
domain specific constructed features that express the quality of a data point
such as number of missing values in the point or use nine default features.
The outcome can be explored with plot methods and the feature constructed data
acquired with get methods.
Author: Markus Vattulainen [aut, cre]
Maintainer: Markus Vattulainen <markus.vattulainen@gmail.com>
Diff between preproviz versions 0.1.0 dated 2016-01-09 and 0.1.1 dated 2016-02-14
preproviz-0.1.0/preproviz/tests/testthat/test_class.R |only preproviz-0.1.1/preproviz/DESCRIPTION | 7 ++++--- preproviz-0.1.1/preproviz/MD5 | 16 ++++++++-------- preproviz-0.1.1/preproviz/NAMESPACE | 1 + preproviz-0.1.1/preproviz/R/01BaseClass.R | 5 +++-- preproviz-0.1.1/preproviz/build/vignette.rds |binary preproviz-0.1.1/preproviz/inst/doc/preproviz.Rmd | 4 ++-- preproviz-0.1.1/preproviz/inst/doc/preproviz.html | 17 +++++++++-------- preproviz-0.1.1/preproviz/tests/testthat/test.R |only preproviz-0.1.1/preproviz/vignettes/preproviz.Rmd | 4 ++-- 10 files changed, 29 insertions(+), 25 deletions(-)
Title: Polygon Clipping
Description: R port of Angus Johnson's open source library Clipper. Performs polygon clipping operations (intersection, union, set minus, set difference) for polygonal regions of arbitrary complexity, including holes. Also computes offset polygons (spatial buffer zones, morphological dilations, Minkowski dilations) for polygonal regions and polygonal lines. There is a function for removing self-intersections from polygon data.
Author: Angus Johnson [aut],
Adrian Baddeley [aut, cre],
Brian Ripley [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between polyclip versions 1.3-2 dated 2015-05-27 and 1.4-1 dated 2016-02-14
DESCRIPTION | 20 ++++++---- MD5 | 15 ++++--- NAMESPACE | 4 +- R/clipper.R | 34 +++++++++++++++++ man/polyclip.Rd | 7 +++ man/polylineoffset.Rd | 2 - man/polyoffset.Rd | 2 - man/polysimplify.Rd |only src/interface.cpp | 97 ++++++++++++++++++++++++++++++++++++++++++++++++++ 9 files changed, 161 insertions(+), 20 deletions(-)
Title: Estimates of Coefficient of Overlapping for Animal Activity
Patterns
Description: Provides functions to fit kernel density functions to
data on temporal activity patterns of animals; estimate coefficients
of overlapping of densities for two species; and calculate bootstrap
estimates of confidence intervals.
Author: Mike Meredith and Martin Ridout
Maintainer: Mike Meredith <mmeredith@wcs.org>
Diff between overlap versions 0.2.4 dated 2014-10-14 and 0.2.6 dated 2016-02-14
overlap-0.2.4/overlap/inst/tests/test-all.R |only overlap-0.2.6/overlap/DESCRIPTION | 12 +++++----- overlap-0.2.6/overlap/MD5 | 20 ++++++++--------- overlap-0.2.6/overlap/NAMESPACE | 6 +++++ overlap-0.2.6/overlap/NEWS | 8 ++++++ overlap-0.2.6/overlap/R/densityPlot.R | 2 - overlap-0.2.6/overlap/R/miscPlottingUtils.R | 31 +++++++++++++++++---------- overlap-0.2.6/overlap/R/overlapPlot.R | 2 - overlap-0.2.6/overlap/build/vignette.rds |binary overlap-0.2.6/overlap/data/simulatedData.rda |binary overlap-0.2.6/overlap/inst/doc/overlap.pdf |binary overlap-0.2.6/overlap/inst/tests/testthat |only 12 files changed, 52 insertions(+), 29 deletions(-)
Title: Kirill's Miscellaneous Functions
Description: A collection of useful functions not found anywhere else,
mainly for programming: Pretty intervals, generalized lagged
differences, checking containment in an interval, creating a
factor where the levels maintain the order of appearance,
sampling rows from a data frame, converting seconds from
midnight to and from H:M:S format, choosing the first non-NA
value, transposing lists of lists, returning the name of the
file currently sourced, smart named lists and vectors, and an
alternative interface to assign().
Author: Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between kimisc versions 0.2-1 dated 2014-04-02 and 0.3 dated 2016-02-14
kimisc-0.2-1/kimisc/inst/NEWS.Rd |only kimisc-0.2-1/kimisc/tests/Examples |only kimisc-0.3/kimisc/DESCRIPTION | 46 ++++++----- kimisc-0.3/kimisc/MD5 | 83 +++++++++++---------- kimisc-0.3/kimisc/NAMESPACE | 14 +++ kimisc-0.3/kimisc/NEWS.md |only kimisc-0.3/kimisc/R/coalesce_na.R | 9 +- kimisc-0.3/kimisc/R/cut.R |only kimisc-0.3/kimisc/R/export.R | 16 ++-- kimisc-0.3/kimisc/R/gdiff.R | 40 +++++----- kimisc-0.3/kimisc/R/hms_to_seconds.R | 12 +-- kimisc-0.3/kimisc/R/in_interval.R | 22 ++--- kimisc-0.3/kimisc/R/kimisc-package.R | 22 ----- kimisc-0.3/kimisc/R/list_to_df.R |only kimisc-0.3/kimisc/R/nlist.R | 2 kimisc-0.3/kimisc/R/sample_data_frame.R | 7 - kimisc-0.3/kimisc/R/seconds_to_hms.R | 8 +- kimisc-0.3/kimisc/R/thisfile.R | 30 +++++-- kimisc-0.3/kimisc/R/tll.R | 1 kimisc-0.3/kimisc/R/vswitch.R |only kimisc-0.3/kimisc/inst/staticdocs |only kimisc-0.3/kimisc/man/coalesce.na.Rd | 3 kimisc-0.3/kimisc/man/cut_format.Rd |only kimisc-0.3/kimisc/man/df_to_list.Rd |only kimisc-0.3/kimisc/man/export.Rd | 3 kimisc-0.3/kimisc/man/export.list.Rd | 3 kimisc-0.3/kimisc/man/gdiff.Rd | 13 +-- kimisc-0.3/kimisc/man/hms.to.seconds.Rd | 3 kimisc-0.3/kimisc/man/in.interval.lo.Rd | 3 kimisc-0.3/kimisc/man/in.interval.ro.Rd | 3 kimisc-0.3/kimisc/man/kimisc-package.Rd | 31 +++---- kimisc-0.3/kimisc/man/list_to_df.Rd |only kimisc-0.3/kimisc/man/nc.Rd | 3 kimisc-0.3/kimisc/man/nin.interval.lo.Rd | 3 kimisc-0.3/kimisc/man/nin.interval.ro.Rd | 3 kimisc-0.3/kimisc/man/nlist.Rd | 3 kimisc-0.3/kimisc/man/ofactor.Rd | 3 kimisc-0.3/kimisc/man/sample-methos.Rd | 3 kimisc-0.3/kimisc/man/seconds.to.hms.Rd | 3 kimisc-0.3/kimisc/man/setMissingNames.Rd | 3 kimisc-0.3/kimisc/man/thisfile.Rd | 15 +++ kimisc-0.3/kimisc/man/tll.Rd | 3 kimisc-0.3/kimisc/man/vswitch.Rd |only kimisc-0.3/kimisc/tests/test-all.R | 2 kimisc-0.3/kimisc/tests/testthat/test-cut.R |only kimisc-0.3/kimisc/tests/testthat/test-gdiff.R |only kimisc-0.3/kimisc/tests/testthat/test-kimisc.R | 7 - kimisc-0.3/kimisc/tests/testthat/test-list_to_df.R |only kimisc-0.3/kimisc/tests/testthat/test-thisfile.R | 5 - kimisc-0.3/kimisc/tests/testthat/test-vswitch.R |only 50 files changed, 236 insertions(+), 194 deletions(-)
Title: Graphical Representation and Modeling of Metagenomic Reads
Description: Represents metagenomic samples on the Euclidean space to examine similarity amongst samples by studying clusters in the model. Given the matrix of metagenomic counts for samples, this package (1) quantifies dissimilarity between samples using Kendall's tau-distance, (2) constructs multidimensional models of different dimension, and (3) plots the models for visualization and comparison.
Author: Deepak Nag Ayyala [aut, cre],
Shili Lin [aut]
Maintainer: Deepak Nag Ayyala <deepaknagayyala@gmail.com>
Diff between GrammR versions 1.0.1 dated 2014-12-16 and 1.1.0 dated 2016-02-14
DESCRIPTION | 25 +++++++++++++++---------- MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 6 +++++- data/metagencounts.rda |binary man/Count2Distance.Rd | 2 +- man/GrammR-package.Rd | 6 +++--- man/GrammRGUI.Rd | 2 +- man/GrammRServ.Rd | 2 +- man/GraphMetagen.Rd | 6 +++--- man/KenDist.Rd | 2 +- man/MCError.Rd | 2 +- man/MakeGUIPlots.Rd | 2 +- man/MakeServPlots.Rd | 2 +- man/MatrixkNorm.Rd | 6 +++--- man/OptimClusts.Rd | 4 ++-- man/Summarize.Rd | 2 +- man/metagencounts.Rd | 2 +- 17 files changed, 56 insertions(+), 47 deletions(-)
Title: Functions for Simple Fisheries Stock Assessment Methods
Description: Functions to perform a variety of simple fish stock assessment
methods. Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.4 dated 2015-12-21 and 0.8.5 dated 2016-02-14
DESCRIPTION | 12 +- MD5 | 147 +++++++++++++++++------------------ NAMESPACE | 4 R/FSA.R | 2 R/PSDlit.R | 2 R/WSlit.R | 2 R/addZeroCatch.R | 4 R/ageComparisons.R | 91 +++++++++++---------- R/alkIndivAge.R | 2 R/alkPlot.R | 2 R/alkSummaries.R | 4 R/capHistConvert.R | 2 R/capHistSum.R | 2 R/catchCurve.R | 2 R/chapmanRobson.R | 2 R/depletion.R | 2 R/growthModels.R | 2 R/hist.formula.R | 2 R/histFromSum.R |only R/knitUtil.R | 32 ++----- R/lencat.R | 2 R/lwCompPreds.R | 2 R/metaM.R | 21 ++--- R/mrClosed.R | 33 ++++++- R/mrOpen.R | 2 R/psdAdd.R | 6 - R/psdCI.R | 2 R/psdCalc.R | 2 R/psdPlot.R | 2 R/psdVal.R | 2 R/removal.R | 2 R/srStarts.R | 2 R/stockRecruitment.R | 2 R/tictactoe.R | 2 R/vbStarts.R | 23 +++-- R/wrAdd.R | 2 R/wsVal.R | 2 man/FSA.Rd | 2 man/PSDlit.Rd | 2 man/WSlit.Rd | 2 man/addZeroCatch.Rd | 4 man/ageBias.Rd | 16 +-- man/agePrecision.Rd | 18 ++-- man/alkAgeDist.Rd | 2 man/alkIndivAge.Rd | 2 man/alkMeanVar.Rd | 2 man/alkPlot.Rd | 2 man/capHistConvert.Rd | 2 man/capHistSum.Rd | 2 man/catchCurve.Rd | 2 man/chapmanRobson.Rd | 2 man/depletion.Rd | 2 man/growthModels.Rd | 2 man/hist.formula.Rd | 2 man/histFromSum.Rd |only man/lencat.Rd | 2 man/lwCompPreds.Rd | 2 man/metaM.Rd | 15 ++- man/mrClosed.Rd | 2 man/mrOpen.Rd | 2 man/psdAdd.Rd | 6 - man/psdCI.Rd | 2 man/psdCalc.Rd | 2 man/psdPlot.Rd | 2 man/psdVal.Rd | 2 man/removal.Rd | 2 man/srStarts.Rd | 2 man/stockRecruitment.Rd | 2 man/tictactoe.Rd | 2 man/vbStarts.Rd | 2 man/wrAdd.Rd | 2 man/wsVal.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test_AgeComparisons.R | 36 ++++++++ tests/testthat/test_histFromSum.R |only tests/testthat/test_mrClosed.R | 23 +++-- 76 files changed, 343 insertions(+), 260 deletions(-)