Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive pre-built widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/1.10.4/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shiny versions 0.13.0 dated 2016-01-12 and 0.13.1 dated 2016-02-17
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++--------- NEWS | 13 ++++++++++++ R/bootstrap-layout.R | 2 + R/reactives.R | 4 --- R/utils.R | 45 ++++++++++++++----------------------------- inst/doc/events.html | 4 +-- inst/tests/test-reactivity.r | 21 ++++++++++++++------ inst/www/shared/shiny.min.js | 2 - man/exprToFunction.Rd | 6 ----- 10 files changed, 63 insertions(+), 60 deletions(-)
Title: R Object-Oriented Programming with or without References
Description: Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.oo versions 1.19.0 dated 2015-02-27 and 1.20.0 dated 2016-02-17
DESCRIPTION | 10 ++--- MD5 | 65 +++++++++++++++++--------------- NAMESPACE | 6 ++- NEWS | 21 ++++++++++ R/020.makeObjectFinalizer,private.R | 2 - R/050.Object.R | 20 ++++++++-- R/060.Class.R | 18 ++++----- R/BasicObject.R | 4 +- R/Exception.R | 10 ++--- R/Interface.R | 20 +++++----- R/Package.R | 71 ++++++++++++++++++++---------------- R/Rdoc.R | 21 +++------- R/RdocException.R | 8 ++-- R/extend.default.R | 2 - R/ll.default.R | 6 +-- R/zzz.rJava-tweaks.R |only man/Class.Rd | 2 - man/Exception.Rd | 2 - man/Interface.Rd | 32 ++++++++-------- man/InternalErrorException.Rd | 2 - man/Package.Rd | 2 - man/RccViolationException.Rd | 2 - man/Rdoc.Rd | 2 - man/RdocException.Rd | 46 +++++++++++------------ man/getSource.RdocException.Rd | 2 - tests/BasicObject.R | 44 ++++++++++++++++++++++ tests/Class.R | 51 ++++++++++++++++++++++++- tests/Interface.R |only tests/Object.R | 26 +++++++++++++ tests/Object.finalize,noattach.R | 8 +++- tests/Object.finalize,onoff.R | 10 +++-- tests/Object.finalize.R | 10 +++-- tests/Package.R | 20 ++++++++++ tests/hashCode.R |only tests/typeOfClass.R | 4 ++ 35 files changed, 369 insertions(+), 180 deletions(-)
Title: Enveloping the Aster Model
Description: Envelope methodology and aster modeling are combined to provide users with precise estimation of expected Darwinian fitness.
Author: Daniel J. Eck <eckxx049@umn.edu>
Maintainer: Daniel J. Eck <eckxx049@umn.edu>
Diff between envlpaster versions 0.1-1 dated 2015-12-16 and 0.1-2 dated 2016-02-17
DESCRIPTION | 8 ++--- MD5 | 34 +++++++++++++----------- R/fit_boot_Efron.R | 66 ++++++++++++++++++++++++------------------------ R/secondboot.R | 42 +++++++++++++----------------- R/selection.R | 55 ++++++++++++++++++++++++---------------- build/partial.rdb |binary data/Mguttatus.rda |only data/datalist | 1 data/generateddata.rda |binary data/simdata30nodes.rda |binary man/Mguttatus.Rd |only man/eigenboot.Rd | 4 +- man/eigenbootcanon.Rd | 4 +- man/fit_boot.Rd | 4 +- man/fit_boot_Efron.Rd | 10 +++++-- man/secondboot.Rd | 10 +++++-- man/selection.Rd | 4 +- man/targetboot.Rd | 4 +- man/targetbootcanon.Rd | 4 +- 19 files changed, 135 insertions(+), 115 deletions(-)
Title: Entropy Partitioning to Measure Diversity
Description: Measurement and partitioning of diversity, based on Tsallis entropy.
Author: Eric Marcon, Bruno Herault
Maintainer: Eric Marcon <Eric.Marcon@ecofog.gf>
Diff between entropart versions 1.4-4 dated 2016-01-13 and 1.4-5 dated 2016-02-17
entropart-1.4-4/entropart/R/Originality.Species.R |only entropart-1.4-4/entropart/man/Originality.Species.Rd |only entropart-1.4-5/entropart/DESCRIPTION | 12 ++-- entropart-1.4-5/entropart/MD5 | 19 +++--- entropart-1.4-5/entropart/NAMESPACE | 9 +++ entropart-1.4-5/entropart/NEWS | 13 ++++ entropart-1.4-5/entropart/R/CheckentropartArguments.R | 17 ++++- entropart-1.4-5/entropart/R/GenSimpson.R |only entropart-1.4-5/entropart/R/GenSimpsonD.R |only entropart-1.4-5/entropart/R/Tsallis.R | 52 ++++++++++-------- entropart-1.4-5/entropart/inst/doc/entropart.pdf |binary entropart-1.4-5/entropart/man/GenSimpson.Rd |only entropart-1.4-5/entropart/man/Preprocess.Tree.Rd | 2 13 files changed, 82 insertions(+), 42 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly
configurable drop-in replacements for base url() and download.file() with
better performance, support for encryption (https, ftps), gzip compression,
authentication, and other libcurl goodies. The core of the package implements a
framework for performing fully customized requests where data can be processed
either in memory, on disk, or streaming via the callback or connection
interfaces. Some knowledge of libcurl is recommended; for a more-user-friendly
web client see the 'httr' package which builds on this package with http
specific tools and logic.
Author: Jeroen Ooms [cre, aut],
Hadley Wickham [ctb],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between curl versions 0.9.5 dated 2016-01-23 and 0.9.6 dated 2016-02-17
curl-0.9.5/curl/R/nslooup.R |only curl-0.9.6/curl/DESCRIPTION | 6 +++--- curl-0.9.6/curl/MD5 | 25 +++++++++++++------------ curl-0.9.6/curl/NAMESPACE | 1 + curl-0.9.6/curl/NEWS | 6 ++++++ curl-0.9.6/curl/R/nslookup.R |only curl-0.9.6/curl/configure | 18 ++++++++++-------- curl-0.9.6/curl/inst/doc/intro.html | 14 +++++++------- curl-0.9.6/curl/man/nslookup.Rd | 13 +++++++++---- curl-0.9.6/curl/src/callbacks.c | 4 ++-- curl-0.9.6/curl/src/curl-common.h | 2 +- curl-0.9.6/curl/src/fetch.c | 6 ++++-- curl-0.9.6/curl/src/interrupt.c |only curl-0.9.6/curl/src/nslookup.c | 1 + curl-0.9.6/curl/src/utils.c | 16 ++++------------ 15 files changed, 61 insertions(+), 51 deletions(-)
More information about archivist.github at CRAN
Permanent link
Title: Fetch and Analyze Data from 'WaterML' and 'WaterOneFlow' Web
Services
Description: Lets you connect to any of the Consortium of Universities for the Advancement
of Hydrologic Sciences, Inc. ('CUAHSI') Water Data Center 'WaterOneFlow' web services
and read any 'WaterML' hydrological time series data file. To see list of available
web services, see <http://hiscentral.cuahsi.org>. All versions of 'WaterML'
(1.0, 1.1 and 2.0) and both types of the web service protocol ('SOAP' and 'REST') are supported.
The package has six data download functions: GetServices(): show all public web
services from the HIS Central Catalog. HISCentral_GetSites() and HISCentral_GetSeriesCatalog():
search for sites or time series from the HIS Central catalog based on geographic bounding box,
server, or keyword. GetVariables(): Show a data.frame with all variables on the server.
GetSites(): Show a data.frame with all sites on the server. GetSiteInfo(): Show what variables,
methods and quality control levels are available at the specific site. GetValues(): Given a site
code, variable code, start time and end time, fetch a data.frame of all the observation time
series data values. The GetValues() function can also parse 'WaterML' data from a custom URL or
from a local file. The package also has five data upload functions:
AddSites(), AddVariables(), AddMethods(), AddSources(), and AddValues().
These functions can be used for uploading data to a 'HydroServer Lite' Observations
Data Model ('ODM') database via the 'JSON' data upload web service interface.
Author: Jiri Kadlec [aut, cre]
Maintainer: Jiri Kadlec <jirikadlec2@gmail.com>
Diff between WaterML versions 1.6.0 dated 2016-01-26 and 1.7.0 dated 2016-02-17
DESCRIPTION | 46 ++++++++++++++---------------- MD5 | 8 ++--- R/GetSites.R | 2 - R/GetValues.R | 62 +++++++++++++++++++++++++++-------------- inst/doc/WaterML-Tutorial.html | 17 ++++++++--- 5 files changed, 81 insertions(+), 54 deletions(-)
Title: Topic Models
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
Author: Bettina Grün [aut, cre],
Kurt Hornik [aut]
Maintainer: Bettina Grün <Bettina.Gruen@jku.at>
Diff between topicmodels versions 0.2-2 dated 2015-07-01 and 0.2-3 dated 2016-02-17
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- build/vignette.rds |binary inst/CITATION | 30 ++++++++++++------------------ inst/NEWS.Rd | 8 ++++++++ inst/doc/topicmodels.pdf |binary src/ctm.c | 10 ++++++++-- src/ctm.h | 1 + src/dataset.cpp | 5 ++++- src/dataset.h | 12 +----------- src/lda-model.c | 2 ++ src/model.cpp | 7 +++++++ src/rGibbslda.cpp | 4 ++-- src/rctm.c | 28 ++++++++++++++++++++++++++-- src/rlda.c | 22 +++++++++++++++++++++- 15 files changed, 109 insertions(+), 54 deletions(-)
Title: Functions for Calculating Tolerance Intervals
Description: Statistical tolerance limits provide the limits between which we can expect to find a specified proportion of a sampled population with a given level of confidence. This package provides functions for estimating tolerance limits for various distributions. Plotting is also available for tolerance limits of continuous random variables.
Author: Derek S. Young [aut, cre]
Maintainer: Derek S. Young <derek.young@uky.edu>
Diff between tolerance versions 1.1.1 dated 2015-12-11 and 1.2.0 dated 2016-02-17
DESCRIPTION | 8 +- MD5 | 44 ++++++++------ NAMESPACE | 5 + NEWS | 18 ++++++ R/Ktable.R | 132 ++++++++++++++++++++++---------------------- R/anovatol.R | 104 +++++++++++++++++----------------- R/dpareto.R |only R/dparetoll.R |only R/dparetotolint.R |only R/normOC.R |only R/poislind.R | 67 +++++++++++----------- R/poislindll.R | 4 - R/poislindtolint.R | 4 - R/regtolint.R | 6 +- R/zipftolint.R | 16 ++--- R/zmll.R | 8 +- man/Ktable.Rd | 141 +++++++++++++++++++++++++---------------------- man/dpareto.Rd |only man/dparetoll.Rd |only man/dparetotolint.Rd |only man/normOC.Rd |only man/normss.Rd | 4 - man/poislind.Rd | 76 ++++++++++++------------- man/poislindll.Rd | 6 -- man/poislindtolint.Rd | 86 ++++++++++++++-------------- man/tolerance.package.Rd | 4 - man/zmll.Rd | 14 ++-- 27 files changed, 394 insertions(+), 353 deletions(-)
Title: Data Analysis of Liquid-Liquid Systems
Description: Analyses experimental data from liquid-liquid phase diagrams and
provide a simple way to obtain its parameters and a simplified report. Designed
initially to analyse Aqueous Two-Phases Systems, the package will include (every
other update) new functions in order to comprise useful tools in liquid-liquid
analysis.
Author: Diego F Coelho <diegofcoelho@gmail.com>
Maintainer: Diego F Coelho <diegofcoelho@gmail.com>
Diff between LLSR versions 0.0.1.9525 dated 2015-08-10 and 0.0.2.0 dated 2016-02-17
DESCRIPTION | 21 +- MD5 | 74 ++++----- NAMESPACE | 60 +++---- R/AQSearch.CAS.R | 92 ++++++----- R/AQSearch.R | 176 +++++++++++---------- R/AQSearchUtils.R | 53 +++--- R/AQSys.R | 341 ++++++++++++++++++++++++----------------- R/AQSys.err.R | 98 ++++++------ R/AQSys.gsnchk.R | 167 ++++++++++---------- R/AQSys.mathDesc.R | 111 ++++++------- R/AQSys.mrchk.R | 241 +++++++++++++++-------------- R/AQSys.mrgsn.R | 182 +++++++++++----------- R/AQSysCurve.R | 177 +++++++++++++-------- R/AQSysDB.R | 351 ++++++++++++++++++++++--------------------- R/AQSysFormulas.R | 149 +++++++++--------- R/AQSysTern.R |only R/AQSysUtils.R | 175 +++++++++++---------- R/LLSRUtils.R | 22 +- R/LLSRxy.R | 48 ++--- R/datasets.R | 39 ++-- README.md | 8 man/AQSearch.CAS.Rd | 48 ++--- man/AQSearch.Rd | 94 +++++------ man/AQSys.Rd | 98 ++++++------ man/AQSys.crpt.Rd | 70 ++++---- man/AQSys.gsnchk.Rd | 112 ++++++------- man/AQSys.plot.Rd | 134 ++++++++-------- man/AQSys.tielines.Rd | 86 +++++----- man/AQSysBancroft.Rd | 80 ++++----- man/AQSysCurve.Rd | 134 ++++++++-------- man/AQSysDB.Rd | 48 ++--- man/AQSysList.Rd | 24 +- man/AQSysOthmer.Rd | 80 ++++----- man/AQSysTern.Rd |only man/LLSR.info.Rd | 30 ++- man/LLSRxy.Rd | 62 +++---- man/peg4kslt.Rd | 54 +++--- tests/testthat.R | 8 tests/testthat/testMainFns.R | 34 ++-- 39 files changed, 1998 insertions(+), 1783 deletions(-)
Title: Interactive GGE Biplots in R
Description: Description: A GUI with which to construct and interact with GGE biplots.
Author: Elisa Frutos Bernal <efb@usal.es>, Purificacion Galindo Villardon <pgalindo@usal.es>
Maintainer: Elisa Frutos Bernal <efb@usal.es>
Diff between GGEBiplotGUI versions 1.0-8 dated 2014-04-28 and 1.0-9 dated 2016-02-17
ChangeLog | 1 + DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NAMESPACE | 8 +++++++- R/GGEBiplot.R | 26 +++++++++++++------------- inst/CITATION | 4 ++-- man/GGEBiplotGUI-package.Rd | 4 ++-- 7 files changed, 38 insertions(+), 31 deletions(-)
Title: Boost Mutex Functionality in R
Description: Boost mutex functionality in R.
Author: Michael J. Kane <kaneplusplus@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between synchronicity versions 1.1.9 dated 2015-11-09 and 1.1.9.1 dated 2016-02-17
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- src/synchronicity.cpp | 1 + 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre],
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-3 dated 2016-02-03 and 1.4-4 dated 2016-02-17
DESCRIPTION | 8 +-- MD5 | 16 +++---- R/methods.R | 20 ++++++++- inst/NEWS | 4 + inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary man/cftest.Rd | 9 +--- tests/Examples/multcomp-Ex.Rout.save | 72 ++++++++++++++++++++++++++++++----- 9 files changed, 100 insertions(+), 29 deletions(-)
Title: The MBESS R Package
Description: Implements methods that useful in designing research and analyzing data, with
particular emphasis on methods that are developed for or used within the behavioral,
educational, and social sciences (broadly defined). That being said, many of the methods
implemented within MBESS are applicable to a wide variety of disciplines. MBESS has a
suite of functions for a variety of related topics, such as effect sizes, confidence intervals
for effect sizes (including standardized effect sizes and noncentral effect sizes), sample size
planning (from the accuracy in parameter estimation [AIPE], power analytic, equivalence, and
minimum-risk point estimation perspectives), mediation analysis, various properties of
distributions, and a variety of utility functions. MBESS (pronounced ``em-bes'') was originally
an acronym for "Methods for the Behavioral, Educational, and Social Sciences," but at this
point MBESS contains methods applicable and used in a wide variety of fields and is an
orphan acronym, in the sense that what was an acronym is now literally its name. MBESS has
greatly benefited from others, see <http://nd.edu/~kkelley/site/MBESS.html> for a detailed
list of those that have contributed and other details.
Author: Ken Kelley [aut, cre]
Maintainer: Ken Kelley <kkelley@nd.edu>
Diff between MBESS versions 3.3.3 dated 2012-12-17 and 4.0.0 dated 2016-02-17
MBESS-3.3.3/MBESS/ACKNOWLEDGEMENTS |only MBESS-3.3.3/MBESS/DISCLAIMER |only MBESS-3.3.3/MBESS/R/ci.reliability.bs.R |only MBESS-3.3.3/MBESS/R/conf.limits.nct.M1.R |only MBESS-3.3.3/MBESS/R/conf.limits.nct.M2.R |only MBESS-3.3.3/MBESS/R/conf.limits.nct.M3.R |only MBESS-3.3.3/MBESS/TIMELINE |only MBESS-3.3.3/MBESS/man/ci.reliability.bs.Rd |only MBESS-3.3.3/MBESS/man/conf.limits.nct.M1.Rd |only MBESS-3.3.3/MBESS/man/conf.limits.nct.M2.Rd |only MBESS-3.3.3/MBESS/man/conf.limits.nct.M3.Rd |only MBESS-3.3.3/MBESS/man/costCRD.Rd |only MBESS-3.3.3/MBESS/man/createDataCRD.Rd |only MBESS-3.3.3/MBESS/man/findWidthCRDDiff.Rd |only MBESS-3.3.3/MBESS/man/findWidthCRDES.Rd |only MBESS-3.3.3/MBESS/man/likCIESCRD.Rd |only MBESS-3.3.3/MBESS/man/wideFormat.Rd |only MBESS-4.0.0/MBESS/DESCRIPTION | 43 MBESS-4.0.0/MBESS/MD5 | 247 - MBESS-4.0.0/MBESS/NAMESPACE | 14 MBESS-4.0.0/MBESS/R/CFA.1.R | 218 - MBESS-4.0.0/MBESS/R/Expected.R2.R | 20 MBESS-4.0.0/MBESS/R/Variance.R2.R | 21 MBESS-4.0.0/MBESS/R/ancova.random.data.R | 55 MBESS-4.0.0/MBESS/R/ci.R2.R | 395 +- MBESS-4.0.0/MBESS/R/ci.c.R | 101 MBESS-4.0.0/MBESS/R/ci.c.ancova.R | 48 MBESS-4.0.0/MBESS/R/ci.reliability.R | 1651 ++++++++---- MBESS-4.0.0/MBESS/R/ci.rmsea.R | 18 MBESS-4.0.0/MBESS/R/ci.sc.R | 132 MBESS-4.0.0/MBESS/R/ci.sc.ancova.R | 106 MBESS-4.0.0/MBESS/R/conf.limits.nc.chisq.R | 2 MBESS-4.0.0/MBESS/R/conf.limits.nct.R | 278 +- MBESS-4.0.0/MBESS/R/cor2cov.R | 2 MBESS-4.0.0/MBESS/R/cv.R | 7 MBESS-4.0.0/MBESS/R/mediation.R | 893 +++--- MBESS-4.0.0/MBESS/R/mediation.effect.plot.R | 3 MBESS-4.0.0/MBESS/R/mr.cv.R |only MBESS-4.0.0/MBESS/R/mr.smd.R |only MBESS-4.0.0/MBESS/R/ss.aipe.R2.R | 1090 +++---- MBESS-4.0.0/MBESS/R/ss.aipe.R2.sensitivity.R | 284 -- MBESS-4.0.0/MBESS/R/ss.aipe.c.ancova.R | 99 MBESS-4.0.0/MBESS/R/ss.aipe.c.ancova.sensitivity.R | 256 - MBESS-4.0.0/MBESS/R/ss.aipe.reg.coef.R | 504 +-- MBESS-4.0.0/MBESS/R/ss.aipe.reg.coef.sensitivity.R | 237 - MBESS-4.0.0/MBESS/R/ss.aipe.reliability.R | 1050 ++++--- MBESS-4.0.0/MBESS/R/ss.aipe.rmsea.sensitivity.R | 19 MBESS-4.0.0/MBESS/R/ss.aipe.sc.ancova.R | 388 +- MBESS-4.0.0/MBESS/R/ss.aipe.sc.ancova.sensitivity.R | 600 ++-- MBESS-4.0.0/MBESS/R/ss.aipe.sem.path.R | 96 MBESS-4.0.0/MBESS/R/ss.aipe.sem.path.sensitiv.R | 120 MBESS-4.0.0/MBESS/R/ss.power.pcm.R | 168 - MBESS-4.0.0/MBESS/R/ss.power.sem.R |only MBESS-4.0.0/MBESS/R/upsilon.R |only MBESS-4.0.0/MBESS/R/vit.fitted.R | 595 ++-- MBESS-4.0.0/MBESS/R/widthsscrd.R | 2194 +++++++++------- MBESS-4.0.0/MBESS/man/CFA.1.Rd | 13 MBESS-4.0.0/MBESS/man/Cor.Mat.MM.Rd | 6 MBESS-4.0.0/MBESS/man/Expected.R2.Rd | 6 MBESS-4.0.0/MBESS/man/F.and.R2.Noncentral.Conversion.Rd | 2 MBESS-4.0.0/MBESS/man/Gardner.LD.Rd | 6 MBESS-4.0.0/MBESS/man/HS.data.Rd | 6 MBESS-4.0.0/MBESS/man/MBESS-package.Rd | 27 MBESS-4.0.0/MBESS/man/Variance.R2.Rd | 2 MBESS-4.0.0/MBESS/man/aipe.smd.Rd | 142 - MBESS-4.0.0/MBESS/man/ancova.random.data.Rd | 91 MBESS-4.0.0/MBESS/man/ci.R.Rd | 159 - MBESS-4.0.0/MBESS/man/ci.R2.Rd | 18 MBESS-4.0.0/MBESS/man/ci.c.Rd | 164 - MBESS-4.0.0/MBESS/man/ci.c.ancova.Rd | 31 MBESS-4.0.0/MBESS/man/ci.cv.Rd | 129 MBESS-4.0.0/MBESS/man/ci.pvaf.Rd | 12 MBESS-4.0.0/MBESS/man/ci.rc.Rd | 8 MBESS-4.0.0/MBESS/man/ci.reg.coef.Rd | 8 MBESS-4.0.0/MBESS/man/ci.reliability.Rd | 140 - MBESS-4.0.0/MBESS/man/ci.rmsea.Rd | 70 MBESS-4.0.0/MBESS/man/ci.sc.Rd | 40 MBESS-4.0.0/MBESS/man/ci.sc.ancova.Rd | 68 MBESS-4.0.0/MBESS/man/ci.sm.Rd | 121 MBESS-4.0.0/MBESS/man/ci.smd.Rd | 141 - MBESS-4.0.0/MBESS/man/ci.smd.c.Rd | 16 MBESS-4.0.0/MBESS/man/ci.snr.Rd | 137 MBESS-4.0.0/MBESS/man/ci.src.Rd | 8 MBESS-4.0.0/MBESS/man/ci.srsnr.Rd | 4 MBESS-4.0.0/MBESS/man/conf.limits.nc.chisq.Rd | 4 MBESS-4.0.0/MBESS/man/conf.limits.ncf.Rd | 104 MBESS-4.0.0/MBESS/man/conf.limits.nct.Rd | 163 - MBESS-4.0.0/MBESS/man/cor2cov.Rd | 4 MBESS-4.0.0/MBESS/man/covmat.from.cfm.Rd | 2 MBESS-4.0.0/MBESS/man/cv.Rd | 64 MBESS-4.0.0/MBESS/man/intr.plot.2d.Rd | 4 MBESS-4.0.0/MBESS/man/intr.plot.Rd | 3 MBESS-4.0.0/MBESS/man/mediation.Rd | 29 MBESS-4.0.0/MBESS/man/mr.cv.Rd |only MBESS-4.0.0/MBESS/man/mr.smd.Rd |only MBESS-4.0.0/MBESS/man/power.density.equivalence.md.Rd | 11 MBESS-4.0.0/MBESS/man/power.equivalence.md.Rd | 4 MBESS-4.0.0/MBESS/man/power.equivalence.md.plot.Rd | 4 MBESS-4.0.0/MBESS/man/prof.salary.Rd | 64 MBESS-4.0.0/MBESS/man/s.u.Rd | 2 MBESS-4.0.0/MBESS/man/smd.Rd | 8 MBESS-4.0.0/MBESS/man/ss.aipe.R2.Rd | 34 MBESS-4.0.0/MBESS/man/ss.aipe.R2.sensitivity.Rd | 16 MBESS-4.0.0/MBESS/man/ss.aipe.c.ancova.Rd | 2 MBESS-4.0.0/MBESS/man/ss.aipe.c.ancova.sensitivity.Rd | 2 MBESS-4.0.0/MBESS/man/ss.aipe.cv.Rd | 4 MBESS-4.0.0/MBESS/man/ss.aipe.pcm.Rd | 2 MBESS-4.0.0/MBESS/man/ss.aipe.rc.Rd | 3 MBESS-4.0.0/MBESS/man/ss.aipe.reg.coef.Rd | 4 MBESS-4.0.0/MBESS/man/ss.aipe.reg.coef.sensitivity.Rd | 9 MBESS-4.0.0/MBESS/man/ss.aipe.reliability.Rd | 77 MBESS-4.0.0/MBESS/man/ss.aipe.rmsea.Rd | 3 MBESS-4.0.0/MBESS/man/ss.aipe.rmsea.sensitivity.Rd | 2 MBESS-4.0.0/MBESS/man/ss.aipe.sc.Rd | 6 MBESS-4.0.0/MBESS/man/ss.aipe.sc.ancova.Rd | 4 MBESS-4.0.0/MBESS/man/ss.aipe.sc.ancova.sensitivity.Rd | 12 MBESS-4.0.0/MBESS/man/ss.aipe.sc.sensitivity.Rd | 4 MBESS-4.0.0/MBESS/man/ss.aipe.sem.path.Rd | 2 MBESS-4.0.0/MBESS/man/ss.aipe.sem.path.sensitiv.Rd | 4 MBESS-4.0.0/MBESS/man/ss.aipe.sm.Rd | 6 MBESS-4.0.0/MBESS/man/ss.aipe.sm.sensitivity.Rd | 14 MBESS-4.0.0/MBESS/man/ss.aipe.smd.Rd | 6 MBESS-4.0.0/MBESS/man/ss.aipe.smd.sensitivity.Rd | 10 MBESS-4.0.0/MBESS/man/ss.aipe.src.Rd | 4 MBESS-4.0.0/MBESS/man/ss.aipe.src.sensitivity.Rd | 4 MBESS-4.0.0/MBESS/man/ss.power.R2.Rd | 2 MBESS-4.0.0/MBESS/man/ss.power.pcm.Rd | 20 MBESS-4.0.0/MBESS/man/ss.power.rc.Rd | 2 MBESS-4.0.0/MBESS/man/ss.power.reg.coef.Rd | 4 MBESS-4.0.0/MBESS/man/ss.power.sem.Rd |only MBESS-4.0.0/MBESS/man/ssAIPECRD.Rd | 57 MBESS-4.0.0/MBESS/man/ssAIPECRDES.Rd | 307 +- MBESS-4.0.0/MBESS/man/t.and.smd.conversion.Rd | 12 MBESS-4.0.0/MBESS/man/upsilon.Rd |only MBESS-4.0.0/MBESS/man/verify.ss.aipe.R2.Rd | 2 MBESS-4.0.0/MBESS/man/vit.Rd | 174 - MBESS-4.0.0/MBESS/man/vit.fitted.Rd | 4 137 files changed, 8132 insertions(+), 6685 deletions(-)
Title: Linearized Bregman Algorithms for Generalized Linear Models
Description: Efficient procedures for fitting the regularization path
for linear, binomial, multinomial, Ising and Potts models with lasso,
group lasso or column lasso(only for multinomial) penalty.
The package uses Linearized Bregman Algorithm to solve the
regularization path through iterations. Bregman Inverse Scale Space Differential
Inclusion solver is also provided for linear model with lasso penalty.
Author: Feng Ruan, Jiechao Xiong and Yuan Yao
Maintainer: Jiechao Xiong <xiongjiechao@pku.edu.cn>
Diff between Libra versions 1.4 dated 2015-11-18 and 1.5 dated 2016-02-17
DESCRIPTION | 10 - MD5 | 49 ++++---- NAMESPACE | 4 R/cv.lb.R | 26 +++- R/ggm.R |only R/ising.R | 52 +++++--- R/iss.R | 27 +--- R/lb.R | 298 ++++++++++++++++++-------------------------------- R/plot.lb.R | 2 R/potts.R | 78 ++++--------- R/predict.lb.R | 8 - data/isingdata.RData |only data/west10.RData |only man/cv.lb.Rd | 8 - man/ggm.Rd |only man/ising.Rd | 33 +++-- man/isingdata.Rd |only man/iss.Rd | 23 +-- man/lb.Rd | 40 +++--- man/potts.Rd | 21 +-- man/west10.Rd |only src/LBLasso.c | 155 +++++++++----------------- src/LBheader.c | 183 ++++++++++++++++++++++-------- src/LBheader.h | 24 ++-- src/LBlogistic.c | 154 +++++++++---------------- src/LBmultilogistic.c | 244 +++++++++++----------------------------- src/ggm.c |only src/ising.c | 66 ++++++++--- src/potts.c | 153 +++++++++++-------------- 29 files changed, 745 insertions(+), 913 deletions(-)
Title: Set of Common Tools for Forecast Verification
Description: Set of tools to verify forecasts through the computation of typical prediction scores against one or more observational datasets or reanalyses (a reanalysis being a physical extrapolation of observations that relies on the equations from a model, not a pure observational dataset). Intended for seasonal to decadal climate forecasts although can be useful to verify other kinds of forecasts. The package can be helpful in climate sciences for other purposes than forecasting.
Author: Virginie Guemas [aut],
Nicolau Manubens [aut, cre],
Louis-Philippe Caron [aut],
Verónica Torralba [aut],
Chloé Prodhomme [aut],
Martin Ménégoz [aut],
Javier Garcia-Serrano [aut],
Fabian Lienert [aut],
Ludovic Auger [aut],
Isabel Andreu-Burillo [aut]
Maintainer: Nicolau Manubens <nicolau.manubens@bsc.es>
Diff between s2dverification versions 2.4.0 dated 2015-07-28 and 2.5.0 dated 2016-02-17
s2dverification-2.4.0/s2dverification/R/ConfigAddVar.R |only s2dverification-2.4.0/s2dverification/R/ConfigMatchingVars.R |only s2dverification-2.4.0/s2dverification/R/ConfigRemoveVar.R |only s2dverification-2.4.0/s2dverification/R/ConfigShowSimilarVars.R |only s2dverification-2.4.0/s2dverification/R/ConfigShowVars.R |only s2dverification-2.4.0/s2dverification/inst/config/IC3.conf |only s2dverification-2.4.0/s2dverification/man/ConfigAddVar.Rd |only s2dverification-2.4.0/s2dverification/man/ConfigMatchingVars.Rd |only s2dverification-2.4.0/s2dverification/man/s2dverification-package.Rd |only s2dverification-2.5.0/s2dverification/DESCRIPTION | 47 s2dverification-2.5.0/s2dverification/MD5 | 93 s2dverification-2.5.0/s2dverification/NAMESPACE | 3 s2dverification-2.5.0/s2dverification/R/ConfigAddEntry.R | 8 s2dverification-2.5.0/s2dverification/R/ConfigApplyMatchingEntries.R | 146 - s2dverification-2.5.0/s2dverification/R/ConfigEditEntry.R | 21 s2dverification-2.5.0/s2dverification/R/ConfigFileCreate.R | 11 s2dverification-2.5.0/s2dverification/R/ConfigFileOpen.R | 101 s2dverification-2.5.0/s2dverification/R/ConfigFileSave.R | 40 s2dverification-2.5.0/s2dverification/R/ConfigRemoveEntry.R | 4 s2dverification-2.5.0/s2dverification/R/ConfigShowSimilarEntries.R | 16 s2dverification-2.5.0/s2dverification/R/ConfigShowTable.R | 10 s2dverification-2.5.0/s2dverification/R/Load.R | 1141 +++++++--- s2dverification-2.5.0/s2dverification/R/Utils.R | 861 ++++++- s2dverification-2.5.0/s2dverification/R/clim.colors.R |only s2dverification-2.5.0/s2dverification/data/sampleDepthData.RData |binary s2dverification-2.5.0/s2dverification/data/sampleMap.RData |binary s2dverification-2.5.0/s2dverification/data/sampleTimeSeries.RData |binary s2dverification-2.5.0/s2dverification/inst/config/BSC.conf |only s2dverification-2.5.0/s2dverification/inst/config/template.conf | 71 s2dverification-2.5.0/s2dverification/inst/doc/plot_timeseries.R | 82 s2dverification-2.5.0/s2dverification/man/ACC.Rd | 18 s2dverification-2.5.0/s2dverification/man/ConfigApplyMatchingEntries.Rd | 21 s2dverification-2.5.0/s2dverification/man/ConfigEditDefinition.Rd | 16 s2dverification-2.5.0/s2dverification/man/ConfigEditEntry.Rd | 46 s2dverification-2.5.0/s2dverification/man/ConfigFileOpen.Rd | 80 s2dverification-2.5.0/s2dverification/man/ConfigShowSimilarEntries.Rd | 33 s2dverification-2.5.0/s2dverification/man/ConfigShowTable.Rd | 32 s2dverification-2.5.0/s2dverification/man/Corr.Rd | 15 s2dverification-2.5.0/s2dverification/man/Eno.Rd | 14 s2dverification-2.5.0/s2dverification/man/EnoNew.Rd | 14 s2dverification-2.5.0/s2dverification/man/Histo2Hindcast.Rd | 14 s2dverification-2.5.0/s2dverification/man/Load.Rd | 341 +- s2dverification-2.5.0/s2dverification/man/LoadDataFile.Rd | 53 s2dverification-2.5.0/s2dverification/man/PlotACC.Rd | 14 s2dverification-2.5.0/s2dverification/man/PlotEquiMap.Rd | 21 s2dverification-2.5.0/s2dverification/man/PlotStereoMap.Rd | 11 s2dverification-2.5.0/s2dverification/man/ProbBins.Rd | 14 s2dverification-2.5.0/s2dverification/man/RatioRMS.Rd | 14 s2dverification-2.5.0/s2dverification/man/Regression.Rd | 14 s2dverification-2.5.0/s2dverification/man/Smoothing.Rd | 4 s2dverification-2.5.0/s2dverification/man/clim.colors.Rd |only s2dverification-2.5.0/s2dverification/man/s2dverification.Rd |only s2dverification-2.5.0/s2dverification/man/sampleMap.Rd | 46 s2dverification-2.5.0/s2dverification/man/sampleTimeSeries.Rd | 47 54 files changed, 2285 insertions(+), 1252 deletions(-)
More information about s2dverification at CRAN
Permanent link
Title: Advanced Statistical Methods to Model and Adjust for Bias in
Meta-Analysis
Description: The following methods are implemented to evaluate how sensitive the results of a meta-analysis are to potential bias in meta-analysis:
- Copas selection model;
- limit meta-analysis;
- upper bound for outcome reporting bias.
Author: Guido Schwarzer [aut, cre],
James Carpenter [aut],
Gerta Rücker [aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between metasens versions 0.2-0 dated 2014-12-07 and 0.3-0 dated 2016-02-17
DESCRIPTION | 14 +++--- MD5 | 38 +++++++++--------- NAMESPACE | 14 ++++-- NEWS | 32 +++++++++++++++ R/copas.R | 10 +++- R/forest.orbbound.R | 5 -- R/funnel.limitmeta.R | 3 - R/limitmeta.R | 12 +++-- R/orbbound.R | 3 - R/plot.copas.R | 10 +++- R/print.copas.R | 12 +++-- R/print.limitmeta.R | 3 - R/print.orbbound.R | 11 ++--- R/print.summary.limitmeta.R | 89 +++++++++++++++++++++----------------------- R/summary.copas.R | 11 +++-- R/summary.limitmeta.R | 5 -- man/copas.Rd | 5 ++ man/limitmeta.Rd | 13 ++---- man/plot.copas.Rd | 2 man/print.copas.Rd | 4 - 20 files changed, 173 insertions(+), 123 deletions(-)
Title: Object-Oriented Implementation of CRM Designs
Description: Implements a wide range of model-based dose
escalation designs, ranging from classical and modern continual
reassessment methods (CRMs) based on dose-limiting toxicity endpoints to
dual-endpoint designs taking into account a biomarker/efficacy outcome. The
focus is on Bayesian inference, making it very easy to setup a new design
with its own JAGS code. However, it is also possible to implement 3+3
designs for comparison or models with non-Bayesian estimation. The whole
package is written in a modular form in the S4 class system, making it very
flexible for adaptation to new models, escalation or stopping rules.
Author: Daniel Sabanes Bove <sabanesd@roche.com>,
Wai Yin Yeung <w.yeung1@lancaster.ac.uk>,
Giuseppe Palermo <giuseppe.palermo@roche.com>,
Thomas Jaki <jaki.thomas@gmail.com>
Maintainer: Daniel Sabanes Bove <sabanesd@roche.com>
Diff between crmPack versions 0.1.7 dated 2016-01-25 and 0.1.8 dated 2016-02-17
DESCRIPTION | 8 +- MD5 | 16 ++-- R/Design-methods.R | 15 ++-- R/Rules-methods.R | 171 ++++++++++++++++++++++++++++++++++-------------- R/Samples-methods.R | 4 - R/Simulations-methods.R | 6 - inst/NEWS | 13 +++ inst/doc/example.pdf |binary man/nextBest.Rd | 12 +-- 9 files changed, 171 insertions(+), 74 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-27 0.1.5
Title: Draw Venn Diagrams
Description: Draws and displays Venn diagrams up to 7 sets, and any boolean union of set intersections.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between venn versions 1.0 dated 2016-01-09 and 1.1 dated 2016-02-17
DESCRIPTION | 8 - MD5 | 36 +++--- NAMESPACE | 7 - R/checkZone.R | 8 - R/getCentroid.R | 6 - R/getZones.R | 26 +++-- R/openPlot.R | 2 R/plotRules.R | 253 +++++++++++++++++++++++++++++++++++++++++++----- R/translate2.R |only R/venn.R | 265 ++++++++++++++++++++++++++++++++++++--------------- data/borders.csv.gz |binary data/ib.csv.gz |binary data/icoords.csv.gz |binary data/ints.csv.gz |binary data/sets.csv.gz |only inst/ChangeLog | 16 +++ man/getZones.Rd | 6 - man/venn-internal.Rd | 6 - man/venn.Rd | 101 ++++++++++++++++--- man/venn.package.Rd | 4 20 files changed, 580 insertions(+), 164 deletions(-)
Title: NCA Calculation and Population PK Model Diagnosis
Description: A flexible tool is presented here that can perform
(i) traditional non-compartmental analysis (NCA) and
(ii) simulation-based posterior predictive checks for a population
pharmacokinetic (PK) model using NCA metrics.
Author: Chayan Acharya [aut, cre],
Andrew C. Hooker [aut],
Siv Jonsson [aut],
Mats O. Karlsson [aut]
Maintainer: Chayan Acharya <chayan.acharya@farmbio.uu.se>
Diff between ncappc versions 0.2.1.0 dated 2015-12-08 and 0.2.1.1 dated 2016-02-17
DESCRIPTION | 6 +- MD5 | 17 ++++--- R/est.nca.R | 9 ++-- R/ncappc.R | 59 ++++++++++++++++++--------- inst/doc/ncappc-vignette.html | 8 +-- inst/misc/makeLatexRepresentativeDataTable.R |only inst/misc/ncappcReport-NCA.Rnw | 16 +++++++ vignettes/Sub-EstimationMethod.Rmd | 8 +-- vignettes/ncappc-vignette.md | 8 +-- vignettes/ncappc-vignette.txt | 8 +-- 10 files changed, 89 insertions(+), 50 deletions(-)
Title: Query and Install Specific Versions of Packages on CRAN
Description: Installs specified versions of R packages hosted on CRAN and
provides functions to list available versions and the versions of currently
installed packages. These tools can be used to help make R projects and
packages more reproducible. 'versions' fits in the narrow gap between
the 'devtools' install_version() function and the 'checkpoint' package.
devtools::install_version() installs a stated package version from source files
stored on the CRAN archives. However CRAN does not store binary versions of
packages so Windows users need to have RTools installed and Windows and OSX
users get longer installation times. 'checkpoint' uses the Revolution Analytics
MRAN server to install packages (from source or binary) as they were available
on a given date. It also provides a helpful interface to detect the packages
in use in a directory and install all of those packages for a given date.
'checkpoint' doesn't provide install.packages-like functionality however, and
that's what 'versions' aims to do, by querying MRAN. As MRAN only goes back to
2014-09-17, 'versions' can't install packages from before this date.
Author: Nick Golding
Maintainer: Nick Golding <nick.golding.research@gmail.com>
Diff between versions versions 0.1 dated 2015-09-18 and 0.2 dated 2016-02-17
DESCRIPTION | 29 ++++++++++++++++++++--------- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- R/available.versions.R | 40 ++++++++++++++++++++++++++++++---------- R/install.versions.R | 4 ++-- R/utilities.R | 39 ++++++++++++++++++++++++++++++++------- README.md | 10 +++++++--- man/available.versions.Rd | 4 +++- man/install.dates.Rd | 13 +++++++------ man/install.versions.Rd | 23 ++++++++++++----------- man/installed.versions.Rd | 10 ++++++---- man/versions-package.Rd | 7 +++++-- 12 files changed, 136 insertions(+), 67 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.4 dated 2014-12-20 and 0.5 dated 2016-02-17
DESCRIPTION | 10 ++++++---- MD5 | 15 ++++++++------- NAMESPACE | 1 + NEWS | 11 +++++++++++ R/testit.R | 25 +++++++++++++++++++------ R/utils.R | 8 ++++++-- inst |only man/assert.Rd | 18 ++++++++++++++---- man/has_message.Rd | 2 +- 9 files changed, 66 insertions(+), 24 deletions(-)
Title: Stacked Species Distribution Modelling
Description: Allows to map species richness and endemism based on stacked
species distribution models (SSDM). Individuals SDMs can be created using a
single or multiple algorithms (ensemble SDMs). For each species, an SDM can
yield a habitat suitability map, a binary map, a between-algorithm variance
map, and can assess variable importance, algorithm accuracy, and between-
algorithm correlation. Methods to stack individual SDMs include summing
individual probabilities and thresholding then summing. Thresholding can be
based on a specific evaluation metric or by drawing repeatedly from a Bernoulli
distribution. The SSDM package also provides a user-friendly interface.
Author: Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Philippe Birnbaum
Maintainer: Sylvain Schmitt <sylvain.schmitt@agroparistech.fr>
Diff between SSDM versions 0.1.0 dated 2016-02-11 and 0.1.1 dated 2016-02-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 6 +++++- R/plot.model.R | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: OCI Based Oracle Database Interface for R
Description: Oracle Database interface (DBI) driver for R.
This is a DBI-compliant Oracle driver based on the OCI.
Author: Denis Mukhin, David A. James and Jake Luciani
Maintainer: Rajendra S. Pingte <rajendra.pingte@oracle.com>
Diff between ROracle versions 1.2-1 dated 2015-07-31 and 1.2-2 dated 2016-02-17
DESCRIPTION | 10 INSTALL | 399 ++++++++++++++++-------------- MD5 | 110 ++++---- NEWS | 11 R/oci.R | 46 --- configure | 18 - configure.ac | 2 inst/doc/man/de/OraDriver-class.Rd | 2 inst/doc/man/de/dbDriver-methods.Rd | 28 +- inst/doc/man/de/dbReadTable-methods.Rd | 259 +++++++++---------- inst/doc/man/de/dbSendQuery-methods.Rd | 91 ++++-- inst/doc/man/en/OraDriver-class.Rd | 2 inst/doc/man/en/dbDriver-methods.Rd | 28 +- inst/doc/man/en/dbSendQuery-methods.Rd | 67 +++-- inst/doc/man/es/OraDriver-class.Rd | 2 inst/doc/man/es/dbDriver-methods.Rd | 28 +- inst/doc/man/es/dbReadTable-methods.Rd | 129 ++++----- inst/doc/man/es/dbSendQuery-methods.Rd | 89 ++++-- inst/doc/man/fr/OraDriver-class.Rd | 2 inst/doc/man/fr/dbDriver-methods.Rd | 26 + inst/doc/man/fr/dbReadTable-methods.Rd | 115 ++++---- inst/doc/man/fr/dbSendQuery-methods.Rd | 92 ++++-- inst/doc/man/it/OraDriver-class.Rd | 2 inst/doc/man/it/dbDriver-methods.Rd | 26 + inst/doc/man/it/dbReadTable-methods.Rd | 225 ++++++++-------- inst/doc/man/it/dbSendQuery-methods.Rd | 98 ++++--- inst/doc/man/ja/OraDriver-class.Rd | 2 inst/doc/man/ja/dbDriver-methods.Rd | 26 + inst/doc/man/ja/dbReadTable-methods.Rd | 44 +-- inst/doc/man/ja/dbSendQuery-methods.Rd | 95 ++++--- inst/doc/man/ko/OraDriver-class.Rd | 2 inst/doc/man/ko/dbCommit-methods.Rd | 6 inst/doc/man/ko/dbConnect-methods.Rd | 4 inst/doc/man/ko/dbDriver-methods.Rd | 26 + inst/doc/man/ko/dbGetInfo-methods.Rd | 10 inst/doc/man/ko/dbReadTable-methods.Rd | 265 +++++++++---------- inst/doc/man/ko/dbSendQuery-methods.Rd | 106 ++++--- inst/doc/man/pt_BR/OraDriver-class.Rd | 2 inst/doc/man/pt_BR/dbConnect-methods.Rd | 4 inst/doc/man/pt_BR/dbDriver-methods.Rd | 26 + inst/doc/man/pt_BR/dbReadTable-methods.Rd | 215 ++++++++-------- inst/doc/man/pt_BR/dbSendQuery-methods.Rd | 101 ++++--- inst/doc/man/zh_CN/OraDriver-class.Rd | 2 inst/doc/man/zh_CN/dbDriver-methods.Rd | 26 + inst/doc/man/zh_CN/dbReadTable-methods.Rd | 121 ++++----- inst/doc/man/zh_CN/dbSendQuery-methods.Rd | 72 +++-- inst/doc/man/zh_TW/OraDriver-class.Rd | 2 inst/doc/man/zh_TW/dbDriver-methods.Rd | 30 ++ inst/doc/man/zh_TW/dbReadTable-methods.Rd | 225 +++++++--------- inst/doc/man/zh_TW/dbSendQuery-methods.Rd | 106 ++++--- man/OraDriver-class.Rd | 2 man/dbDriver-methods.Rd | 28 +- man/dbSendQuery-methods.Rd | 67 +++-- src/rodbi.c | 153 +++++------ src/rooci.c | 201 +++++++++++++-- src/rooci.h | 16 - 56 files changed, 2272 insertions(+), 1620 deletions(-)
Title: Qualitative Comparative Analysis
Description: Starting with version 2.0, the package QCA acts as an aggregator for the various packages dealing with Qualitative Comparative Analysis. For the moment, it is a gateway to the QCAGUI package, but more related packages are expected to be loaded at runtime.
Author: Adrian Dusa [aut, cre, cph],
Alrik Thiem [aut] (from version 1.0-0, up to version 1.1-3)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 2.0 dated 2015-12-19 and 2.1 dated 2016-02-17
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NAMESPACE | 5 +---- inst/ChangeLog | 3 +++ man/QCA.package.Rd | 8 ++++---- 5 files changed, 18 insertions(+), 17 deletions(-)
Title: Mazama Science Spatial Data Download and Utility Functions
Description: A suite of conversion scripts to create internally standardized
spatial polygons dataframes. Utility scripts use these datasets to return
values such as country, state, timezone, watershed, etc. associated with a
set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Will Leahy [aut],
Henry Nguyen [aut],
Robin Winstanley [aut],
Ruby Fore [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaSpatialUtils versions 0.3.2 dated 2015-07-24 and 0.4.3 dated 2016-02-17
MazamaSpatialUtils-0.3.2/MazamaSpatialUtils/R/convertUSGSHUC8.R |only MazamaSpatialUtils-0.3.2/MazamaSpatialUtils/man/convertUSGSHUC8.Rd |only MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/DESCRIPTION | 14 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/MD5 | 91 - MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/NAMESPACE | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/MazamaSpatialUtils.R | 11 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertGADM.R | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertLayer.R | 10 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertNaturalEarthAdm1.R | 13 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertTMWorldBorders.R | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertTMWorldBordersSimple.R | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertUSCensusCounties.R | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertWBDHUC.R | 211 ++- MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertWikipediaTimezoneTable.R | 1 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertWorldEEZ.R | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/convertWorldTimezones.R | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getCountry.R | 5 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getCountryCode.R | 5 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getCountryName.R | 5 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getHUC.R |only MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getHUCName.R |only MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getSpatialData.R | 5 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getState.R | 5 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getStateCode.R | 5 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getStateName.R | 5 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/getTimezone.R | 5 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/organizePolygons.R | 3 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/R/subsetHUC.R |only MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/README.md |only MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/inst/doc/introduction.html | 658 +++------- MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/MazamaSpatialUtils.Rd | 11 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertGADM.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertLayer.Rd | 6 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertNaturalEarthAdm1.Rd | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertTMWorldBorders.Rd | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertTMWorldBordersSimple.Rd | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertUSCensusCounties.Rd | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertWBDHUC.Rd | 48 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertWorldEEZ.Rd | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/convertWorldTimezones.Rd | 2 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getCountry.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getCountryCode.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getCountryName.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getHUC.Rd |only MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getHUCName.Rd |only MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getSpatialData.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getState.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getStateCode.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getStateName.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/getTimezone.Rd | 4 MazamaSpatialUtils-0.4.3/MazamaSpatialUtils/man/subsetHUC.Rd |only 51 files changed, 583 insertions(+), 604 deletions(-)
More information about MazamaSpatialUtils at CRAN
Permanent link
Title: K-Sample Rank Tests and their Combinations
Description: Compares k samples using the Anderson-Darling test, Kruskal-Wallis type tests
with different rank score criteria, Steel's multiple comparison test, and the
Jonckheere-Terpstra (JT) test. It computes asymptotic, simulated or (limited) exact
P-values, all valid under randomization, with or without ties, or conditionally
under random sampling from populations, given the observed tie pattern. Except for
Steel's test and the JT test it also combines these tests across several blocks of
samples. Also analyzed are 2 x t contingency tables and their blocked combinations
using the Kruskal-Wallis criterion. Steel's test is inverted to provide simultaneous
confidence bounds for shift parameters. A plotting function compares tail probabilities
obtained under asymptotic approximation with those obtained via simulation or exact
calculations.
Author: Fritz Scholz [aut, cre],
Angie Zhu [aut]
Maintainer: Fritz Scholz <fscholz@u.washington.edu>
Diff between kSamples versions 1.0.1 dated 2015-02-09 and 1.2-3 dated 2016-02-17
DESCRIPTION | 41 MD5 | 64 NAMESPACE | 9 R/Harding.R |only R/Steel.test.R | 192 -- R/SteelConfInt.R | 112 - R/Steelnormal.R |only R/Steelnormal0.R |only R/ad.test.R | 236 +- R/ad.test.combined.R | 68 R/contingency2xt.R | 300 +-- R/contingency2xt.comb.R | 478 ++--- R/djt.R |only R/io.R |only R/io2.R |only R/jt.test.R |only R/listmake.R |only R/na.remove.R |only R/pjt.R |only R/pp.kSamples.R | 84 R/print.kSamples.R | 52 R/qjt.R |only R/qn.test.R | 209 +- R/qn.test.combined.R | 49 R/test.list.R |only man/Steel.test.Rd | 109 - man/SteelConfInt.Rd | 164 + man/ad.pval.Rd | 10 man/ad.test.Rd | 97 - man/ad.test.combined.Rd | 134 - man/contingency2xt.Rd | 59 man/contingency2xt.comb.Rd | 29 man/jt.dist.Rd |only man/jt.test.Rd |only man/kSamples-package.Rd | 20 man/pp.kSamples.Rd | 11 man/qn.test.Rd | 87 man/qn.test.combined.Rd | 87 src/kSamples.c | 4112 ++++++++++++++++++--------------------------- src/myfuns.h | 73 40 files changed, 3223 insertions(+), 3663 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: An easily accessible continuous (and discrete) time dynamic
modelling package for panel and time series data, reliant upon the OpenMx.
package (http://openmx.psyc.virginia.edu/) for computation. Most dynamic
modelling approaches to longitudinal data rely on the assumption that time
intervals between observations are consistent. When this assumption is
adhered to, the data gathering process is necessarily limited to a specific
schedule, and when broken, the resulting parameter estimates may be biased
and reduced in power. Continuous time models are conceptually similar to
vector autoregressive models (thus also the latent change models popularised
in a structural equation modelling context), however by explicitly including
the length of time between observations, continuous time models are freed
from the assumption that measurement intervals are consistent. This allows:
data to be gathered irregularly; the elimination of noise and bias due to
varying measurement intervals; parsimonious structures for complex dynamics.
The application of such a model in this SEM framework allows full-information
maximum-likelihood estimates for both N = 1 and N > 1 cases, multiple measured
indicators per latent process, and the flexibility to incorporate additional
elements, including individual heterogeneity in the latent process and
manifest intercepts, and time dependent and independent exogenous covariates.
Furthermore, due to the SEM implementation we are able to estimate a random
effects model where the impact of time dependent and time independent predictors
can be assessed simultaneously, but without the classic problems of random
effects models assuming no covariance between unit level effects and predictors.
Author: Manuel Voelkle [aut, cph] (Original development of continuous time
model specification within OpenMx, advisor for further development),
Han Oud [aut, cph] (Original development of continuous time model
specification within OpenMx),
Charles Driver [aut, cre, cph] (Further development of continuous time
model specification within OpenMx, package development,
documentation and maintenance)
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 1.1.5 dated 2015-12-16 and 1.1.5.1 dated 2016-02-17
DESCRIPTION | 8 MD5 | 19 R/ctGenerate.R | 10 build/vignette.rds |binary inst/doc/ctsem.R | 1 inst/doc/ctsem.pdf |binary inst/doc/ctsem.rnw | 1 man/ctGenerate.Rd | 4 vignettes/ctsem-blx.bib |only vignettes/ctsem.rnw | 1 vignettes/references.bib | 1470 ++++++++++++++++++++++------------------------- 11 files changed, 739 insertions(+), 775 deletions(-)