Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high dimensional data. Ensembles
of classification, regression, survival and probability prediction trees are supported. Data from
genome-wide association studies can be analyzed efficiently. In addition to data frames, datasets
of class 'gwaa.data' (R package 'GenABEL') can be directly analyzed.
Author: Marvin N. Wright
Maintainer: Marvin N. Wright <wright@imbs.uni-luebeck.de>
Diff between ranger versions 0.3.0 dated 2015-11-10 and 0.4.0 dated 2016-04-07
ranger-0.3.0/ranger/R/tune.R |only ranger-0.3.0/ranger/man/tune.mtry.Rd |only ranger-0.3.0/ranger/man/tune.nodesize.Rd |only ranger-0.4.0/ranger/DESCRIPTION | 17 ranger-0.4.0/ranger/MD5 | 71 +-- ranger-0.4.0/ranger/NAMESPACE | 6 ranger-0.4.0/ranger/NEWS | 12 ranger-0.4.0/ranger/R/RcppExports.R | 4 ranger-0.4.0/ranger/R/csrf.R |only ranger-0.4.0/ranger/R/getTerminalNodeIDs.R |only ranger-0.4.0/ranger/R/predict.R | 52 +- ranger-0.4.0/ranger/R/ranger.R | 104 +++- ranger-0.4.0/ranger/man/csrf.Rd |only ranger-0.4.0/ranger/man/getTerminalNodeIDs.Rd |only ranger-0.4.0/ranger/man/importance.ranger.Rd | 2 ranger-0.4.0/ranger/man/predict.ranger.Rd | 12 ranger-0.4.0/ranger/man/predict.ranger.forest.Rd | 8 ranger-0.4.0/ranger/man/predictions.ranger.Rd | 2 ranger-0.4.0/ranger/man/predictions.ranger.prediction.Rd | 2 ranger-0.4.0/ranger/man/print.ranger.Rd | 2 ranger-0.4.0/ranger/man/print.ranger.forest.Rd | 2 ranger-0.4.0/ranger/man/print.ranger.prediction.Rd | 2 ranger-0.4.0/ranger/man/ranger.Rd | 75 +-- ranger-0.4.0/ranger/man/timepoints.ranger.Rd | 2 ranger-0.4.0/ranger/man/timepoints.ranger.prediction.Rd | 2 ranger-0.4.0/ranger/src/AAA_check_cpp11.cpp |only ranger-0.4.0/ranger/src/Forest.cpp | 141 +++++- ranger-0.4.0/ranger/src/Forest.h | 29 + ranger-0.4.0/ranger/src/ForestClassification.cpp | 33 + ranger-0.4.0/ranger/src/ForestRegression.cpp | 50 +- ranger-0.4.0/ranger/src/ForestSurvival.cpp | 4 ranger-0.4.0/ranger/src/Makevars | 1 ranger-0.4.0/ranger/src/RcppExports.cpp | 13 ranger-0.4.0/ranger/src/Tree.cpp | 162 +++++-- ranger-0.4.0/ranger/src/Tree.h | 21 ranger-0.4.0/ranger/src/rangerCpp.cpp | 16 ranger-0.4.0/ranger/src/utility.cpp | 26 + ranger-0.4.0/ranger/src/utility.h | 63 +- ranger-0.4.0/ranger/src/version.h | 2 ranger-0.4.0/ranger/tests/testthat/test_csrf.R |only ranger-0.4.0/ranger/tests/testthat/test_ranger.R | 320 ++++++++++++++- 41 files changed, 968 insertions(+), 290 deletions(-)
Title: Self Contained Units of Source Code
Description: Provides modules as an organizational unit for source code. Modules
enforce to be more rigorous when defining dependencies and have
a local search path. They can be used as a sub unit within packages
or in scripts.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between modules versions 0.3.0 dated 2016-02-23 and 0.4.0 dated 2016-04-07
DESCRIPTION | 12 LICENSE | 15 MD5 | 32 - NEWS | 9 R/NAMESPACE.R | 30 - R/getSearchPath.R | 38 +- R/modfun.R | 102 ++--- R/module-class.R | 122 +++--- R/module-coercion.R | 88 ++-- R/module-helper.R | 182 +++++----- R/module.R | 314 ++++++++--------- build/vignette.rds |binary inst/doc/modulesInR.html | 9 tests/testthat.R | 8 tests/testthat/test-model-coercion.R | 112 +++--- tests/testthat/test-modfun.R | 148 ++++---- tests/testthat/test-module.R | 620 +++++++++++++++++------------------ 17 files changed, 931 insertions(+), 910 deletions(-)
Title: Meta-Analysis of Significance Values
Description: The canonical way to perform meta-analysis
involves using effect sizes. When they are not available
this package provides a number of methods for
meta-analysis of significance values, a
number of data-sets to replicate published results, and a
routine for graphical display.
Author: Michael Dewey
Maintainer: Michael Dewey <lists@dewey.myzen.co.uk>
Diff between metap versions 0.6-2 dated 2016-02-24 and 0.7 dated 2016-04-07
DESCRIPTION | 9 +++++---- MD5 | 20 +++++++++++++------- NAMESPACE | 1 + NEWS | 10 ++++++++++ R/sump.R | 17 ++++++++++------- R/votep.R | 2 +- build |only inst/doc |only man/metap-package.Rd | 11 +++++++++-- man/sump.Rd | 6 +++++- vignettes |only 11 files changed, 54 insertions(+), 22 deletions(-)
Title: Tools for Analysing N-Glycan Data
Description: Useful utilities in N-glycan data analysis. This package tries
to fill the gap in N-glycan data analysis by providing easy
to use functions for basic operations on data
(see https://en.wikipedia.org/wiki/Glycomics for more
details on Glycomics). At the moment glycanr is mostly oriented
to data obtained by UPLC and LCMS analysis of Plasma and IgG glycome.
Author: Ivo Ugrina [aut, cre, cph],
Lucija Klaric [aut],
Frano Vuckovic [aut]
Maintainer: Ivo Ugrina <ivo@iugrina.com>
Diff between glycanr versions 0.2.0 dated 2015-09-19 and 0.3.0 dated 2016-04-07
DESCRIPTION | 30 ++-- LICENSE | 2 MD5 | 55 ++++--- NAMESPACE | 6 NEWS.md |only R/derived.traits.2011.R | 2 R/derived.traits.R | 16 -- R/glycanrinfo.R |only R/glyco.outliers.R | 68 +++++---- R/handlers.R |only R/normalization.R | 311 ++++++++++++++++++++++++++++++++++++++++++--- README.md | 6 build/vignette.rds |binary data |only inst/doc/introduction.Rmd | 15 +- inst/doc/introduction.html | 17 +- inst/doc/plots.html | 20 +- man/glyco.outliers.Rd | 39 +++-- man/glyco.plot.Rd | 4 man/ildt.Rd | 8 - man/ildt.translate.Rd | 2 man/iudt.Rd | 10 - man/iudt.translate.Rd | 2 man/mediannorm.Rd |only man/medianquotientnorm.Rd |only man/mpiu.Rd |only man/mpiunorm.Rd |only man/phdt.Rd | 12 - man/quantilenorm.Rd |only man/refpeaknorm.Rd |only man/tanorm.Rd | 24 ++- tests |only vignettes/introduction.Rmd | 15 +- 33 files changed, 497 insertions(+), 167 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.5.8 dated 2016-04-05 and 0.5.9 dated 2016-04-07
DESCRIPTION | 8 +-- MD5 | 26 +++++----- R/vardchangannual.R | 6 ++ R/vardchanges.R | 120 +++++++++++++++++++++++++----------------------- R/vardchangespoor.R | 22 ++++++-- R/vardcros.R | 37 +++++++++----- R/vardcrospoor.R | 21 +++++--- inst/NEWS | 4 + man/vardchangannual.Rd | 3 + man/vardchanges.Rd | 3 + man/vardchangespoor.Rd | 3 + man/vardcros.Rd | 5 +- man/vardcrospoor.Rd | 3 + man/vardpoor-package.Rd | 4 - 14 files changed, 161 insertions(+), 104 deletions(-)
Title: Multilocus Random Mixed Linear Model for Genome-Wide Association
Study
Description: Conduct multi-locus random-SNP-effect mixed linear model analysis for genome-wide association study. First, each marker is scanned using random-SNP-effect mixed linear model method. Then, all the markers selected from the first step are included in the multi-locus model and their effects are estimated by an EM empirical Bayes method. No multiple test correction is needed.
Author: Wenlong Ren,Shibo Wang,Bo Huang and Yuanming Zhang
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
Diff between mrMLM versions 1.1 dated 2016-03-06 and 1.2 dated 2016-04-07
mrMLM-1.1/mrMLM/inst/extdata/genotype.csv |only mrMLM-1.1/mrMLM/inst/extdata/kinship.csv |only mrMLM-1.1/mrMLM/inst/extdata/phenotype.csv |only mrMLM-1.1/mrMLM/inst/extdata/structure.csv |only mrMLM-1.2/mrMLM/DESCRIPTION | 10 mrMLM-1.2/mrMLM/MD5 | 24 mrMLM-1.2/mrMLM/R/mrMLM.R | 623 +++++++--- mrMLM-1.2/mrMLM/inst/doc/Instruction.pdf |binary mrMLM-1.2/mrMLM/inst/extdata/Hapmap_Genotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/Hapmap_Kinship.csv |only mrMLM-1.2/mrMLM/inst/extdata/Hapmap_Phenotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/Hapmap_Population_Structure.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Character_Genotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Character_Kinship.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Character_Phenotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Character_Population_Structure.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Numeric_Genotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Numeric_Kinship.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Numeric_Phenotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Numeric_Population_Structure.csv |only mrMLM-1.2/mrMLM/man/mrMLM-package.Rd | 6 21 files changed, 490 insertions(+), 173 deletions(-)
Title: Load Environment Variables from '.env'
Description: Load configuration from a '.env' file, that is
in the current working directory, into environment variables.
Author: Gabor Csardi [aut, cre, cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between dotenv versions 1.0 dated 2014-08-27 and 1.0.1 dated 2016-04-07
DESCRIPTION | 19 +++++++++--------- LICENSE | 2 - MD5 | 15 +++++++------- NAMESPACE | 5 ---- R/dotenv-package.r | 52 +++++++++++++++++++++++--------------------------- README.md | 6 ++--- man/dotenv-package.Rd | 3 +- man/load_dot_env.Rd | 3 +- vignettes |only 9 files changed, 51 insertions(+), 54 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service (http://crunch.io/) provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal@crunch.io>
Diff between crunch versions 1.8.0 dated 2016-02-22 and 1.9.4 dated 2016-04-07
crunch-1.8.0/crunch/R/combine.R |only crunch-1.8.0/crunch/R/crest.R |only crunch-1.8.0/crunch/man/logMessage.Rd |only crunch-1.8.0/crunch/man/startLog.Rd |only crunch-1.8.0/crunch/tests/testthat/test-cache.R |only crunch-1.8.0/crunch/tests/testthat/test-combine.R |only crunch-1.8.0/crunch/tests/testthat/test-dataset.R |only crunch-1.8.0/crunch/tests/testthat/test-timing.R |only crunch-1.8.0/crunch/vignettes/analyze.RData |only crunch-1.8.0/crunch/vignettes/array-variables.RData |only crunch-1.8.0/crunch/vignettes/derive.RData |only crunch-1.8.0/crunch/vignettes/getting-started.RData |only crunch-1.8.0/crunch/vignettes/variable-order.RData |only crunch-1.8.0/crunch/vignettes/variables.RData |only crunch-1.9.4/crunch/DESCRIPTION | 12 crunch-1.9.4/crunch/MD5 | 302 +++++----- crunch-1.9.4/crunch/NAMESPACE | 30 crunch-1.9.4/crunch/R/AllClasses.R | 12 crunch-1.9.4/crunch/R/AllGenerics.R | 10 crunch-1.9.4/crunch/R/R-to-variable.R | 11 crunch-1.9.4/crunch/R/add-variable.R | 1 crunch-1.9.4/crunch/R/api.R | 57 - crunch-1.9.4/crunch/R/append-dataset.R | 1 crunch-1.9.4/crunch/R/auth.R | 12 crunch-1.9.4/crunch/R/batch-catalog.R | 4 crunch-1.9.4/crunch/R/categories.R | 19 crunch-1.9.4/crunch/R/category.R | 7 crunch-1.9.4/crunch/R/combine-categories.R |only crunch-1.9.4/crunch/R/copy.R | 10 crunch-1.9.4/crunch/R/crunch.R | 30 crunch-1.9.4/crunch/R/dataset-catalog.R | 16 crunch-1.9.4/crunch/R/dataset-extract.R | 10 crunch-1.9.4/crunch/R/dataset.R | 75 +- crunch-1.9.4/crunch/R/expressions.R | 74 -- crunch-1.9.4/crunch/R/filters.R | 49 + crunch-1.9.4/crunch/R/fork-and-merge.R | 24 crunch-1.9.4/crunch/R/get-datasets.R | 45 - crunch-1.9.4/crunch/R/log.R | 72 -- crunch-1.9.4/crunch/R/members.R |only crunch-1.9.4/crunch/R/misc.R | 21 crunch-1.9.4/crunch/R/new-dataset.R | 33 - crunch-1.9.4/crunch/R/ordering.R | 25 crunch-1.9.4/crunch/R/progress.R |only crunch-1.9.4/crunch/R/projects.R |only crunch-1.9.4/crunch/R/shoji-catalog.R | 65 +- crunch-1.9.4/crunch/R/shoji.R | 5 crunch-1.9.4/crunch/R/show.R | 79 ++ crunch-1.9.4/crunch/R/subvariables.R | 76 +- crunch-1.9.4/crunch/R/teams.R | 51 - crunch-1.9.4/crunch/R/tuple.R | 7 crunch-1.9.4/crunch/R/user.R | 4 crunch-1.9.4/crunch/R/variable-catalog.R | 53 - crunch-1.9.4/crunch/R/variable-order-slots.R | 2 crunch-1.9.4/crunch/R/variable-to-R.R | 53 - crunch-1.9.4/crunch/R/variable-update.R | 21 crunch-1.9.4/crunch/R/variable.R | 2 crunch-1.9.4/crunch/build/vignette.rds |binary crunch-1.9.4/crunch/inst/doc/analyze.R | 2 crunch-1.9.4/crunch/inst/doc/analyze.Rmd | 8 crunch-1.9.4/crunch/inst/doc/array-variables.R | 6 crunch-1.9.4/crunch/inst/doc/array-variables.Rmd | 6 crunch-1.9.4/crunch/inst/doc/datasets.R | 33 - crunch-1.9.4/crunch/inst/doc/datasets.Rmd | 14 crunch-1.9.4/crunch/inst/doc/derive.R | 33 - crunch-1.9.4/crunch/inst/doc/derive.Rmd | 4 crunch-1.9.4/crunch/inst/doc/filters.R |only crunch-1.9.4/crunch/inst/doc/filters.Rmd |only crunch-1.9.4/crunch/inst/doc/filters.html |only crunch-1.9.4/crunch/inst/doc/getting-started.R | 5 crunch-1.9.4/crunch/inst/doc/getting-started.Rmd | 2 crunch-1.9.4/crunch/inst/doc/variable-order.R | 37 - crunch-1.9.4/crunch/inst/doc/variable-order.Rmd | 9 crunch-1.9.4/crunch/inst/doc/variables.R | 85 +- crunch-1.9.4/crunch/inst/doc/variables.Rmd | 19 crunch-1.9.4/crunch/man/VariableOrder-slots.Rd | 4 crunch-1.9.4/crunch/man/catalog-extract.Rd | 34 - crunch-1.9.4/crunch/man/combine.Rd |only crunch-1.9.4/crunch/man/createDataset.Rd | 7 crunch-1.9.4/crunch/man/dataset-extract.Rd | 3 crunch-1.9.4/crunch/man/dataset-update.Rd | 7 crunch-1.9.4/crunch/man/delete.Rd | 5 crunch-1.9.4/crunch/man/describe-catalog.Rd | 44 - crunch-1.9.4/crunch/man/describe-category.Rd | 7 crunch-1.9.4/crunch/man/describe.Rd | 24 crunch-1.9.4/crunch/man/dim-dataset.Rd | 3 crunch-1.9.4/crunch/man/forkDataset.Rd | 4 crunch-1.9.4/crunch/man/loadDataset.Rd | 11 crunch-1.9.4/crunch/man/mergeFork.Rd |only crunch-1.9.4/crunch/man/newDataset.Rd | 6 crunch-1.9.4/crunch/man/newDatasetByCSV.Rd | 6 crunch-1.9.4/crunch/man/newDatasetByColumn.Rd | 6 crunch-1.9.4/crunch/man/newDatasetFromFile.Rd | 7 crunch-1.9.4/crunch/man/project-datasets.Rd |only crunch-1.9.4/crunch/man/session.Rd |only crunch-1.9.4/crunch/man/show-crunch.Rd | 12 crunch-1.9.4/crunch/man/subvars-extract.Rd | 26 crunch-1.9.4/crunch/man/teams.Rd | 17 crunch-1.9.4/crunch/man/toVariable.Rd | 3 crunch-1.9.4/crunch/man/tuple-methods.Rd | 10 crunch-1.9.4/crunch/man/variable-extract.Rd | 7 crunch-1.9.4/crunch/man/variable-to-R.Rd | 4 crunch-1.9.4/crunch/tests/testthat/api/datasets-relative-urls.json | 4 crunch-1.9.4/crunch/tests/testthat/api/datasets.json | 4 crunch-1.9.4/crunch/tests/testthat/api/datasets/dataset1.json | 5 crunch-1.9.4/crunch/tests/testthat/api/datasets/dataset1/variables.json | 12 crunch-1.9.4/crunch/tests/testthat/api/datasets/dataset3.json | 5 crunch-1.9.4/crunch/tests/testthat/api/progress |only crunch-1.9.4/crunch/tests/testthat/api/projects |only crunch-1.9.4/crunch/tests/testthat/api/projects.json |only crunch-1.9.4/crunch/tests/testthat/api/root.json | 3 crunch-1.9.4/crunch/tests/testthat/helper-contexts.R |only crunch-1.9.4/crunch/tests/testthat/helper-expectations.R |only crunch-1.9.4/crunch/tests/testthat/helper.R | 262 +------- crunch-1.9.4/crunch/tests/testthat/test-active-filter.R | 24 crunch-1.9.4/crunch/tests/testthat/test-add-variable-definition.R | 11 crunch-1.9.4/crunch/tests/testthat/test-add-variable.R | 8 crunch-1.9.4/crunch/tests/testthat/test-api.R | 4 crunch-1.9.4/crunch/tests/testthat/test-append-arrays.R | 15 crunch-1.9.4/crunch/tests/testthat/test-appending.R | 3 crunch-1.9.4/crunch/tests/testthat/test-as-data-frame.R | 12 crunch-1.9.4/crunch/tests/testthat/test-auth.R | 10 crunch-1.9.4/crunch/tests/testthat/test-batches.R | 2 crunch-1.9.4/crunch/tests/testthat/test-categories.R | 28 crunch-1.9.4/crunch/tests/testthat/test-combine-categories.R |only crunch-1.9.4/crunch/tests/testthat/test-combine-responses.R |only crunch-1.9.4/crunch/tests/testthat/test-copy-variable.R | 29 crunch-1.9.4/crunch/tests/testthat/test-cube-with-array.R | 4 crunch-1.9.4/crunch/tests/testthat/test-cubes.R | 2 crunch-1.9.4/crunch/tests/testthat/test-dataset-catalog.R | 21 crunch-1.9.4/crunch/tests/testthat/test-dataset-entity.R |only crunch-1.9.4/crunch/tests/testthat/test-drop-rows.R | 6 crunch-1.9.4/crunch/tests/testthat/test-encoding.R | 4 crunch-1.9.4/crunch/tests/testthat/test-expression.R | 29 crunch-1.9.4/crunch/tests/testthat/test-filters.R | 25 crunch-1.9.4/crunch/tests/testthat/test-fork.R | 24 crunch-1.9.4/crunch/tests/testthat/test-get-datasets.R | 40 - crunch-1.9.4/crunch/tests/testthat/test-github.R | 4 crunch-1.9.4/crunch/tests/testthat/test-helper.R | 45 + crunch-1.9.4/crunch/tests/testthat/test-hide-variables.R | 2 crunch-1.9.4/crunch/tests/testthat/test-logging.R | 8 crunch-1.9.4/crunch/tests/testthat/test-make-array.R | 6 crunch-1.9.4/crunch/tests/testthat/test-misc.R | 45 - crunch-1.9.4/crunch/tests/testthat/test-new-dataset.R | 11 crunch-1.9.4/crunch/tests/testthat/test-progress.R |only crunch-1.9.4/crunch/tests/testthat/test-projects.R |only crunch-1.9.4/crunch/tests/testthat/test-session.R |only crunch-1.9.4/crunch/tests/testthat/test-share.R | 10 crunch-1.9.4/crunch/tests/testthat/test-shoji.R | 3 crunch-1.9.4/crunch/tests/testthat/test-subvariables.R | 159 ++++- crunch-1.9.4/crunch/tests/testthat/test-teams.R | 2 crunch-1.9.4/crunch/tests/testthat/test-user.R | 4 crunch-1.9.4/crunch/tests/testthat/test-variable-catalog.R | 27 crunch-1.9.4/crunch/tests/testthat/test-variable-delete.R | 23 crunch-1.9.4/crunch/tests/testthat/test-variable-order.R | 2 crunch-1.9.4/crunch/tests/testthat/test-variable-summary.R | 2 crunch-1.9.4/crunch/tests/testthat/test-variable-type.R | 2 crunch-1.9.4/crunch/tests/testthat/test-variables.R | 6 crunch-1.9.4/crunch/tests/testthat/test-versioning.R | 17 crunch-1.9.4/crunch/tests/testthat/test-weighting.R | 3 crunch-1.9.4/crunch/tests/testthat/utftesting.R | 4 crunch-1.9.4/crunch/vignettes/analyze.Rmd | 8 crunch-1.9.4/crunch/vignettes/array-variables.Rmd | 6 crunch-1.9.4/crunch/vignettes/datasets.Rmd | 14 crunch-1.9.4/crunch/vignettes/derive.Rmd | 4 crunch-1.9.4/crunch/vignettes/economist.RData |only crunch-1.9.4/crunch/vignettes/filters.Rmd |only crunch-1.9.4/crunch/vignettes/getting-started.Rmd | 2 crunch-1.9.4/crunch/vignettes/variable-order.Rmd | 9 crunch-1.9.4/crunch/vignettes/variables.Rmd | 19 crunch-1.9.4/crunch/vignettes/vignettes.RData |only 170 files changed, 1540 insertions(+), 1403 deletions(-)
Title: Chunkwise Text-File Processing for 'dplyr'
Description: Text data can be processed chunkwise using 'dplyr' commands. These
are recorded and executed per data chunk, so large files can be processed with
limited memory using the 'LaF' package.
Author: Edwin de Jonge
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between chunked versions 0.2.0 dated 2016-03-22 and 0.2.1 dated 2016-04-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ tests/testthat/test-print.R | 9 ++++++--- tests/testthat/util.R | 2 +- 5 files changed, 18 insertions(+), 11 deletions(-)
Title: A GUI for Mean Measures of Divergence
Description: Offers a complete and interactive GUI to work out Mean Measures of Divergence, especially for anthropologists.
Author: Frederic Santos
Maintainer: Frederic Santos <frederic.santos@u-bordeaux.fr>
Diff between AnthropMMD versions 0.9.9 dated 2014-04-18 and 1.0.1 dated 2016-04-07
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 4 ++++ R/AnaSettings.R | 12 ++++++------ R/Mat_MMD.R | 4 ++-- R/Prepa_MMD.R | 10 +++++----- R/StartMMD.R | 25 ++++++++++++++++--------- man/AnthropMMD-package.Rd | 4 ++-- man/StartMMD.Rd | 7 +------ 9 files changed, 48 insertions(+), 42 deletions(-)
Title: Recurrent Neural Network
Description: Implementation of a Recurrent Neural Network in R.
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between rnn versions 0.2.0 dated 2015-12-11 and 0.3.0 dated 2016-04-07
DESCRIPTION | 6 MD5 | 14 NEWS | 6 R/rnn.R | 20 README.md | 4 build/vignette.rds |binary inst/doc/rnn.html | 1424 +++++++++++++++++++++++++++++++++++++++++++++-------- man/rnn.Rd | 4 8 files changed, 1256 insertions(+), 222 deletions(-)
Title: R Interface to SDMX Web Services
Description: Provides functions to retrieve data and metadata from providers
that disseminate data by means of SDMX web services.
SDMX (Statistical Data and Metadata eXchange) is a standard that
has been developed with the aim of simplifying the exchange of
statistical information.
More about the SDMX standard and the SDMX Web Services
can be found at: http://sdmx.org .
Author: Attilio Mattiocco, Diana Nicoletti, Gianpaolo Lopez, Banca d'Italia
Maintainer: Attilio Mattiocco <attilio.mattiocco@bancaditalia.it>
Diff between RJSDMX versions 1.6 dated 2016-03-31 and 1.6-1 dated 2016-04-07
DESCRIPTION | 7 ++++--- MD5 | 2 +- 2 files changed, 5 insertions(+), 4 deletions(-)
Title: Model-Based Sliced Inverse Regression
Description: An R package for dimension reduction based on finite Gaussian mixture modeling of inverse regression.
Author: Luca Scrucca <luca@stat.unipg.it>
Maintainer: Luca Scrucca <luca@stat.unipg.it>
Diff between msir versions 1.3 dated 2014-02-24 and 1.3.1 dated 2016-04-07
DESCRIPTION | 15 +++++++-------- MD5 | 14 +++++++------- NAMESPACE | 16 +++++++++++++++- R/msir.R | 22 ++++++++++++---------- man/msir.Rd | 4 ++-- man/msir.dir.Rd | 2 +- man/msir.permutation.test.Rd | 4 +++- man/plot.msir.Rd | 2 +- 8 files changed, 48 insertions(+), 31 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-06 1.0
Title: Rolling Statistics
Description: Parallel functions for computing rolling statistics of time-series
data.
Author: Jason Foster
Maintainer: Jason Foster <jason.j.foster@gmail.com>
Diff between roll versions 1.0.1 dated 2016-04-04 and 1.0.2 dated 2016-04-07
DESCRIPTION | 8 +-- MD5 | 12 ++-- R/roll.R | 6 +- man/roll_mean.Rd | 2 man/roll_sd.Rd | 2 man/roll_var.Rd | 2 src/roll.cpp | 136 ++++++++++++++----------------------------------------- 7 files changed, 53 insertions(+), 115 deletions(-)
Title: Rcmdr Support for the HH Package
Description: Rcmdr menu support for many of the functions in the HH package.
The focus is on menu items for functions we use in our introductory
courses.
Author: Richard M. Heiberger, with contributions from Burt Holland
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between RcmdrPlugin.HH versions 1.1-44 dated 2016-04-05 and 1.1-45 dated 2016-04-07
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 2 +- R/bestSubsetsRegressionModel.HH.R | 7 ++++--- 4 files changed, 14 insertions(+), 13 deletions(-)
More information about RcmdrPlugin.HH at CRAN
Permanent link
Title: The Gauss Hypergeometric Function
Description: The Gaussian hypergeometric function for complex numbers.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hypergeo versions 1.2-11 dated 2015-08-16 and 1.2-13 dated 2016-04-07
hypergeo-1.2-11/hypergeo/inst/CITATION |only hypergeo-1.2-11/hypergeo/man/hypergeo_gosper.Rd |only hypergeo-1.2-11/hypergeo/man/hypergeo_residue.Rd |only hypergeo-1.2-13/hypergeo/DESCRIPTION | 6 hypergeo-1.2-13/hypergeo/MD5 | 34 ++-- hypergeo-1.2-13/hypergeo/R/complex_gamma.R |only hypergeo-1.2-13/hypergeo/R/hypergeo.R | 139 ++++++++++++------- hypergeo-1.2-13/hypergeo/build/vignette.rds |binary hypergeo-1.2-13/hypergeo/inst/doc/hypergeometric.pdf |binary hypergeo-1.2-13/hypergeo/man/buhring.Rd | 14 + hypergeo-1.2-13/hypergeo/man/complex_gamma.Rd |only hypergeo-1.2-13/hypergeo/man/genhypergeo.Rd | 4 hypergeo-1.2-13/hypergeo/man/gosper.Rd |only hypergeo-1.2-13/hypergeo/man/hypergeo_contfrac.Rd | 2 hypergeo-1.2-13/hypergeo/man/hypergeo_cover1.Rd | 4 hypergeo-1.2-13/hypergeo/man/i15.3.6.Rd | 3 hypergeo-1.2-13/hypergeo/man/is.nonpos.Rd | 2 hypergeo-1.2-13/hypergeo/man/residue.Rd |only hypergeo-1.2-13/hypergeo/man/shanks.Rd | 2 hypergeo-1.2-13/hypergeo/man/wolfram.Rd | 8 - hypergeo-1.2-13/hypergeo/tests/aaa.R | 36 ++++ hypergeo-1.2-13/hypergeo/tests/aab.R |only 22 files changed, 172 insertions(+), 82 deletions(-)
Title: Daily Streamflow Trend and Change Point Screening
Description: Screens daily streamflow time series for temporal trends and
change-points. This package has been primarily developed for assessing
the quality of daily streamflow time series. It also contains tools for
plotting and calculating many different streamflow metrics. The package can be
used to produce summary screening plots showing change-points and significant
temporal trends for high flow, low flow, and/or baseflow statistics, or it can
be used to perform more detailed hydrological time series analyses. The
package was designed for screening daily streamflow time series from Water
Survey Canada and the United States Geological Survey but will also work
with streamflow time series from many other agencies.
Author: Jennifer Dierauer [aut, cre],
Paul Whitfield [aut]
Maintainer: Jennifer Dierauer <jen.r.brand@gmail.com>
Diff between FlowScreen versions 0.9 dated 2016-03-19 and 1.0 dated 2016-04-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/FDC.R | 12 ++++-------- man/FDC.Rd | 8 +++----- 4 files changed, 13 insertions(+), 19 deletions(-)
Title: Doubly Robust Inverse Probability Weighted Augmented GEE
Estimator
Description: Implements a semi-parametric GEE estimator accounting for missing data with Inverse-probability weighting (IPW) and for imbalance in covariates with augmentation (AUG). The estimator IPW-AUG-GEE is Doubly robust (DR).
Author: Melanie Prague [aut, cre],
Paul Gilbert [ctb] (Author of R package numDeriv, which has been
acknowledged in numDeriv.R),
Ravi Varadhan [ctb] (Author of R package numDeriv, which has been
acknowledged in numDeriv.R),
Ming Wang [ctb] (Author of R package geesmv, which has been
acknowledged in getFay.R),
Lee McDaniel [ctb] (Author of R package geeM, which has been modified
and referenced in multiple R files),
Nick Henderson [ctb] (Author of R package geeM, which has been modified
and referenced in multiple R files)
Maintainer: Melanie Prague <mprague@hsph.harvard.edu>
Diff between CRTgeeDR versions 1.1 dated 2016-01-16 and 1.2 dated 2016-04-07
DESCRIPTION | 26 +++++++++++++++++++++----- MD5 | 14 +++++++------- R/CRTgeeDR-main.R | 32 ++++++++++++++++---------------- R/getFay.R | 2 +- R/getSandwichNuisance.R | 34 +++++++++++++++++----------------- R/print.R | 32 ++++++++++++++++---------------- man/geeDREstimation.Rd | 4 ++-- man/getCI.Rd | 4 ++-- 8 files changed, 82 insertions(+), 66 deletions(-)