Fri, 08 Apr 2016

New package rrefine with initial version 1.0
Package: rrefine
Type: Package
Title: R Client for OpenRefine API
Version: 1.0
Date: 2016-03-26
Authors@R: c(person("VP", "Nagraj", role = c("aut", "cre"), email = "vpnagraj@virginia.edu"))
Maintainer: VP Nagraj <vpnagraj@virginia.edu>
Description: 'OpenRefine' (formerly 'Google Refine') is a popular, open source data cleaning software. This package enables users to programmatically trigger data transfer between R and 'OpenRefine'. Available functionality includes project import, export and deletion.
License: GPL-3
URL: http://openrefine.org/
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: httr (>= 1.1.0), rlist, readr
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-04-08 15:00:18 UTC; vpn7n
Author: VP Nagraj [aut, cre]
Repository: CRAN
Date/Publication: 2016-04-09 00:55:18

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New package hashmap with initial version 0.1.0
Package: hashmap
Type: Package
Title: The Faster Hash Map
Version: 0.1.0
Date: 2016-04-01
Authors@R: person("Nathan", "Russell", email = "russell.nr2012@gmail.com", role = c("aut", "cre"))
URL: https://github.com/nathan-russell/hashmap
BugReports: https://github.com/nathan-russell/hashmap/issues
Description: Provides a hash table class for fast key-value storage of atomic vector types. Internally, hashmap makes extensive use of Rcpp, boost::variant, and boost::unordered_map to achieve high performance, type-safety, and versatility, while maintaining compliance with the C++98 standard.
License: MIT + file LICENSE
LazyData: Yes
ByteCompile: TRUE
Imports: Rcpp (>= 0.12.4)
LinkingTo: Rcpp, BH
Suggests: devtools, microbenchmark, testthat
Depends: methods
RcppModules: Hashmap
Collate: 'hashmap.R' 'classes.R' 'Hashmap-class.R' 'zzz.R'
NeedsCompilation: yes
Packaged: 2016-04-08 10:23:03 UTC; nathan
Author: Nathan Russell [aut, cre]
Maintainer: Nathan Russell <russell.nr2012@gmail.com>
Repository: CRAN
Date/Publication: 2016-04-09 01:15:32

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New package DiallelAnalysisR with initial version 0.1.1
Package: DiallelAnalysisR
Type: Package
Title: Diallel Analysis with R
Version: 0.1.1
Authors@R: c( person(c("Muhammad", "Yaseen"), email = "myaseen208@gmail.com", role = c("aut", "cre")), person(c("Kent", "M.", "Eskridge"), email = "keskridge1@unl.edu ", role = "ctb"))
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Description: Performs Diallel Analysis with R using Griffing's and Hayman's approaches. Four different methods (1: Method-I (Parents + F1's + reciprocals); 2: Method-II (Parents and one set of F1's); 3: Method-III (One set of F1's and reciprocals); 4: Method-IV (One set of F1's only)) and two methods (1: Fixed Effects Model; 2: Random Effects Model) can be applied using Griffing's approach.
Depends: R (>= 3.1)
Imports: ggplot2, stats
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-04-08 11:57:14 UTC; yaseen
Author: Muhammad Yaseen [aut, cre], Kent M. Eskridge [ctb]
Repository: CRAN
Date/Publication: 2016-04-09 01:18:36

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Package vegan updated to version 2.3-5 with previous version 2.3-4 dated 2016-02-26

Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Helene Wagner
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>

Diff between vegan versions 2.3-4 dated 2016-02-26 and 2.3-5 dated 2016-04-08

 DESCRIPTION                  |    8 +++----
 MD5                          |   44 +++++++++++++++++++++----------------------
 NAMESPACE                    |    1 
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Package rosm updated to version 0.1.4 with previous version 0.1.3 dated 2015-12-06

Title: Plot Raster Map Tiles from Open Street Map and Other Sources
Description: Download and plot Open Street Map <http://www.openstreetmap.org/>, Mapquest <http://www.mapquest.com/>, Bing Maps <http://www.bing.com/maps> and other tiled map sources in a way that works seamlessly with plotting from the 'sp' package. Use to create high-resolution basemaps and add hillshade to vector based maps.
Author: Dewey Dunnington [aut, cre], Timothée Giraud [ctb]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>

Diff between rosm versions 0.1.3 dated 2015-12-06 and 0.1.4 dated 2016-04-08

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New package stablespec with initial version 0.1.3
Package: stablespec
Type: Package
Title: Stable Specification Search in Structural Equation Models
Version: 0.1.3
Date: 2016-04-08
Authors@R: c( person("Ridho", "Rahmadi", , "r.rahmadi@cs.ru.nl", c("aut", "cre")), person("Perry", "Groot", role = c("aut", "ths")), person("Tom", "Heskes", role = c("aut", "ths")) )
Description: An exploratory and heuristic approach for specification search in Structural Equation Modeling. The basic idea is to subsample the original data, and for each subset we search the optimal models. Here the criteria of an optimal model is defined by two objectives: to fit the data well and is simple (parsimonious) model. As these objectives are conflicting, we apply NSGA-II to optimize, such that to get optimal models for the whole range of model complexities. From these optimal models, we observe the model specifications (structures) that are both stable and parsimonious, called relevant. At the end we infer causal model from these relevant structures.
Depends: R (>= 3.1.0)
License: MIT + file LICENSE
LazyData: TRUE
Imports: ggm, matrixcalc, sem, nsga2R, graph, Rgraphviz, methods
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-04-08 09:51:54 UTC; Rahmadi
Author: Ridho Rahmadi [aut, cre], Perry Groot [aut, ths], Tom Heskes [aut, ths]
Maintainer: Ridho Rahmadi <r.rahmadi@cs.ru.nl>
Repository: CRAN
Date/Publication: 2016-04-09 00:21:08

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Package rcanvec updated to version 0.2.0 with previous version 0.1.6 dated 2016-03-24

Title: Access and Plot CanVec and CanVec+ Data for Rapid Basemap Creation in Canada
Description: Provides an interface to the National Topographic System (NTS), which is the way in which a number of freely available Canadian datasets are organized. CanVec and CanVec+ datasets, which include all data used to create Canadian topographic maps, are two such datasets that are useful in creating vector-based maps for locations across Canada. This packages searches CanVec data by location, plots it using pretty defaults, and exports it to human- readable shapefiles for use in another GIS.
Author: Dewey Dunnington <dewey@fishandwhistle.net>
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>

Diff between rcanvec versions 0.1.6 dated 2016-03-24 and 0.2.0 dated 2016-04-08

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Package qwraps2 updated to version 0.1.3 with previous version 0.1.2 dated 2015-11-10

Title: Quick Wraps 2
Description: A collection of (wrapper) functions the creator found useful for quickly placing data summaries and formatted regression results into '.Rnw' or '.Rmd' files. Functions for generating commonly used graphics, such as receiver operating curves or Bland-Altman plots, are also provided by 'qwraps2'. 'qwraps2' is a updated version of a package 'qwraps'. The original version 'qwraps' was never submitted to CRAN but can be found at <https://github.com/dewittpe/qwraps/>. The implementation and limited scope of the functions within 'qwraps2' <https://github.com/dewittpe/qwraps2/> is fundamentally different from 'qwraps'.
Author: Peter DeWitt [aut, cre], Tell Bennett [ctb]
Maintainer: Peter DeWitt <dewittpe@gmail.com>

Diff between qwraps2 versions 0.1.2 dated 2015-11-10 and 0.1.3 dated 2016-04-08

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Package prettymapr updated to version 0.1.5 with previous version 0.1.4 dated 2016-02-03

Title: Scale Bar, North Arrow, and Pretty Margins in R
Description: Automates the process of creating a scale bar and north arrow in any package that uses base graphics to plot in R. Bounding box tools help find and manipulate extents. Finally, there is a function to automate the process of setting margins, plotting the map, scale bar, and north arrow, and resetting graphic parameters upon completion.
Author: Dewey Dunnington <dewey@fishandwhistle.net>
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>

Diff between prettymapr versions 0.1.4 dated 2016-02-03 and 0.1.5 dated 2016-04-08

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Package papeR updated to version 1.0-1 with previous version 1.0-0 dated 2015-11-30

Title: A Toolbox for Writing Pretty Papers and Reports
Description: A toolbox for writing 'knitr', 'Sweave' or other 'LaTeX'- or 'markdown'-based reports and to prettify the output of various estimated models.
Author: Benjamin Hofner, with contributions by many others (see inst/CONTRIBUTIONS)
Maintainer: Benjamin Hofner <benjamin.hofner@fau.de>

Diff between papeR versions 1.0-0 dated 2015-11-30 and 1.0-1 dated 2016-04-08

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Package ncvreg updated to version 3.5-2 with previous version 3.5-1 dated 2016-02-07

Title: Regularization Paths for SCAD and MCP Penalized Regression Models
Description: Efficient algorithms for fitting regularization paths for linear or logistic regression models penalized by MCP or SCAD, with optional additional L2 penalty.
Author: Patrick Breheny [aut,cre], Sangin Lee [ctb]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>

Diff between ncvreg versions 3.5-1 dated 2016-02-07 and 3.5-2 dated 2016-04-08

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 29 files changed, 225 insertions(+), 466 deletions(-)

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Package mwaved updated to version 1.1.3 with previous version 1.1.2 dated 2016-03-15

Title: Multichannel Wavelet Deconvolution with Additive Long Memory Noise
Description: Computes the Wavelet deconvolution estimate of a common signal present in multiple channels that have possible different levels of blur and long memory additive error.
Author: Justin Rory Wishart
Maintainer: Justin Rory Wishart <justin.wishart@mq.edu.au>

Diff between mwaved versions 1.1.2 dated 2016-03-15 and 1.1.3 dated 2016-04-08

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New package mvdalab with initial version 1.0
Package: mvdalab
Type: Package
Title: Multivariate Data Analysis Laboratory
Version: 1.0
Date: 2016-04-07
Author: Nelson Lee Afanador, Thanh Tran, and Lionel Blanchet
Maintainer: Nelson Lee Afanador <nelson.afanador@mvdalab.com>
Description: Implementation of latent variable methods and multivariate modeling tools. The focus is on exploratory analyses using dimensionality reduction methods and classical multivariate statistical tools.
License: GPL-3
LazyData: true
Imports: car, dummies, ggplot2, MASS, moments, parallel, penalized, plyr, reshape2, sn
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-07 19:40:56 UTC; Nelson
Repository: CRAN
Date/Publication: 2016-04-09 00:40:26

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Package ms.sev updated to version 1.0.3 with previous version 1.0.2 dated 2015-09-09

Title: Package for Calculation of ARMSS, Local MSSS and Global MSSS
Description: Calculates ARMSS (age related multiple sclerosis severity), and both local and global MSSS (multiple sclerosis severity score).
Author: Helga Westerlind, Ali Manouchehrinia
Maintainer: Helga Westerlind <Helga.Westerlind@ki.se>

Diff between ms.sev versions 1.0.2 dated 2015-09-09 and 1.0.3 dated 2016-04-08

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Package mateable updated to version 0.3.1 with previous version 0.3.0 dated 2016-03-01

Title: Tools to Assess Mating Potential in Space and Time
Description: Tools to simulate, manage, visualize, and analyze spatially and temporally explicit datasets of mating potential. Implements methods to calculate synchrony, proximity, and compatibility.
Author: Stuart Wagenius [cre, aut], Danny Hanson [aut], Amy Waananen [aut]
Maintainer: Stuart Wagenius <stuart.wagenius@gmail.com>

Diff between mateable versions 0.3.0 dated 2016-03-01 and 0.3.1 dated 2016-04-08

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Package Information updated to version 0.0.9 with previous version 0.0.8 dated 2016-03-26

Title: Data Exploration with Information Theory (Weight-of-Evidence and Information Value)
Description: Performs exploratory data analysis and variable screening for binary classification models using weight-of-evidence (WOE) and information value (IV). In order to make the package as efficient as possible, aggregations are done in data.table and creation of WOE vectors can be distributed across multiple cores. The package also supports exploration for uplift models (NWOE and NIV).
Author: Larsen Kim [aut, cre]
Maintainer: Larsen Kim <kblarsen4@gmail.com>

Diff between Information versions 0.0.8 dated 2016-03-26 and 0.0.9 dated 2016-04-08

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New package gds with initial version 0.1.0
Package: gds
Type: Package
Title: Descriptive Statistics of Grouped Data
Version: 0.1.0
Author: Partha Sarathi Bishnu <psbishnu@gmail.com>
Maintainer: Partha Sarathi Bishnu <psbishnu@gmail.com>
Description: Contains a function called gds() which accepts three input parameters like lower limits, upper limits and the frequencies of the corresponding classes. The gds() function calculate and return the values of mean ('gmean'), median ('gmedian'), mode ('gmode'), variance ('gvar'), standard deviation ('gstdev'), coefficient of variance ('gcv'), quartiles ('gq1', 'gq2', 'gq3'), inter-quartile range ('gIQR'), skewness ('g1'), and kurtosis ('g2') which facilitate effective data analysis. For skewness and kurtosis calculations we use moments.
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-08 09:36:42 UTC; student
Repository: CRAN
Date/Publication: 2016-04-09 00:21:07

More information about gds at CRAN
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Package asnipe updated to version 0.90 with previous version 0.85 dated 2016-01-07

Title: Animal Social Network Inference and Permutations for Ecologists
Description: Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.
Author: Damien R. Farine <dfarine@orn.mpg.de>
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>

Diff between asnipe versions 0.85 dated 2016-01-07 and 0.90 dated 2016-04-08

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Package SCRSELECT (with last version 1.0-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-03-26 1.0-0

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Package spaMM updated to version 1.8.0 with previous version 1.7.2 dated 2016-01-25

Title: Mixed Models, Particularly Spatial GLMMs
Description: Inference in mixed models, including GLMMs with spatial correlations and models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroscedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.
Author: François Rousset [aut, cre, cph], Jean-Baptiste Ferdy [aut, cph], Alexandre Courtiol [ctb], GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>

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Package sjmisc updated to version 1.7 with previous version 1.6 dated 2016-03-14

Title: Data Transformation and Labelled Data Utility Functions
Description: Collection of miscellaneous utility functions (especially intended for people coming from other statistical software packages like 'SPSS', and/ or who are new to R), supporting following common tasks: 1) Reading and writing data between R and other statistical software packages like 'SPSS', 'SAS' or 'Stata' and working with labelled data; this includes easy ways to get and set label attributes, to convert labelled vectors into factors (and vice versa), or to deal with multiple declared missing values etc. 2) Data transformation tasks like recoding, dichotomizing or grouping variables, setting and replacing missing values. 3) Convenient functions to perform frequently used statistical tests, or to calculate various commonly used statistical coefficients.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjmisc versions 1.6 dated 2016-03-14 and 1.7 dated 2016-04-08

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Package hmm.discnp updated to version 0.2-4 with previous version 0.2-3 dated 2014-08-05

Title: Hidden Markov Models with Discrete Non-Parametric Observation Distributions
Description: Fits hidden Markov models with discrete non-parametric observation distributions to data sets. Simulates data from such models. Finds most probable underlying hidden states, the most probable sequences of such states, and the log likelihood of a collection of observations given the parameters of the model.
Author: Rolf Turner
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>

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Package Evapotranspiration updated to version 1.9 with previous version 1.8 dated 2016-01-23

Title: Modelling Actual, Potential and Reference Crop Evapotranspiration
Description: Uses data and constants to calculate potential evapotranspiration (PET) and actual evapotranspiration (AET) from 21 different formulations including Penman, Penman-Monteith FAO 56, Priestley-Taylor and Morton formulations.
Author: Danlu Guo <danlu.guo@adelaide.edu.au>, Seth Westra <swestra@civeng.adelaide.edu.au>
Maintainer: Danlu Guo <danlu.guo@adelaide.edu.au>

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Package checkmate updated to version 1.7.4 with previous version 1.7.3 dated 2016-03-10

Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead.
Author: Michel Lang <michellang@gmail.com>, Bernd Bischl <bernd_bischl@gmx.net>
Maintainer: Michel Lang <michellang@gmail.com>

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Package UpSetR updated to version 1.2.0 with previous version 1.1.1 dated 2016-02-28

Title: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks.
Author: Jake Conway [cre], Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway@student.uml.edu>

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New package utiml with initial version 0.1.0
Package: utiml
Type: Package
Title: Utilities for Multi-Label Learning
Version: 0.1.0
Date: 2016-04-07
Authors@R: person("Adriano", "Rivolli", email = "rivolli@utfpr.edu.br", role = c("aut", "cre"))
Description: Multi-label learning methods and others utilities to support multi- label classification in R.
URL: https://github.com/rivolli/utiml
Depends: R (>= 3.0.0), mldr(>= 0.3.22)
Imports: stats
Suggests: C50, e1071, FSelector, infotheo, kknn, knitr, parallel, randomForest, rJava(>= 0.9), rmarkdown, rpart, RWeka(>= 0.4), testthat
License: GPL | file LICENSE
LazyData: true
BugReports: https://github.com/rivolli/utiml
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-04-08 03:27:06 UTC; rivolli
Author: Adriano Rivolli [aut, cre]
Maintainer: Adriano Rivolli <rivolli@utfpr.edu.br>
Repository: CRAN
Date/Publication: 2016-04-08 10:44:06

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Package RGA updated to version 0.4.2 with previous version 0.4.1 dated 2016-02-06

Title: A Google Analytics API Client
Description: Provides functions for accessing and retrieving data from the Google Analytics APIs (https://developers.google.com/analytics/). Supports OAuth 2.0 authorization. Package provides access to the Management, Core Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and Metadata APIs. Access to all the Google Analytics accounts which the user has access to. Auto-pagination to return more than 10,000 rows of the results by combining multiple data requests. Also package provides shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre], Philipp Upravitelev [ctb], Olga Shramko [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>

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Package pdftools updated to version 0.3 with previous version 0.2 dated 2016-03-04

Title: Extract Text and Data from PDF Documents
Description: Utilities based on libpoppler for extracting text, fonts, attachments and metadata from a pdf file. Also implements rendering of PDF to bitmaps on supported platforms.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

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Package molaR updated to version 3.0 with previous version 2.2 dated 2016-04-06

Title: Dental Surface Complexity Measurement Tools
Description: Surface topography calculations of Dirichlet's normal energy, relief index, and orientation patch count for teeth using scans of enamel caps. Importantly, for the relief index and orientation patch count calculations to work, the scanned tooth files must be oriented with the occlusal plane parallel to the x and y axes, and perpendicular to the z axis. The files should also be simplified, and smoothed in some other software prior to uploading into R.
Author: James D. Pampush [aut, cre, cph], Julia M. Winchester [aut, cph], Paul E. Morse [aut, cph], Alexander Q. Vining [aut, cph]
Maintainer: James D. Pampush <jdpampush@gmail.com>

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New package BWStest with initial version 0.1.0
Package: BWStest
Type: Package
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Authors@R: c(person(c("Steven", "E."), "Pav", role=c("aut","cre"), email="shabbychef@gmail.com"))
Version: 0.1.0
Date: 2016-04-07
License: LGPL-3
Title: Baumgartner Weiss Schindler Test of Equal Distributions
BugReports: https://github.com/shabbychef/BWStest/issues
Description: Performs the 'Baumgartner-Weiss-Schindler' two-sample test of equal probability distributions.
Imports: Rcpp (>= 0.12.3)
LinkingTo: Rcpp
Suggests: testthat
RoxygenNote: 5.0.1
URL: https://github.com/shabbychef/BWStest
Collate: 'bws_test.r' 'BWStest.r' 'RcppExports.R'
NeedsCompilation: yes
Packaged: 2016-04-07 19:55:32 UTC; root
Author: Steven E. Pav [aut, cre]
Repository: CRAN
Date/Publication: 2016-04-08 10:43:49

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Package braidReports updated to version 0.5.3 with previous version 0.5.2 dated 2016-03-23

Title: Visualize Combined Action Response Surfaces and Report BRAID Analyses
Description: Provides functions to generate, format, and style surface plots for visualizing combined action data. Also provides functions for reporting on a BRAID analysis, including plotting curve-shifts, calculating IAE values, and producing full BRAID analysis reports.
Author: Nathaniel R. Twarog
Maintainer: Nathaniel R. Twarog <nathaniel.twarog@stjude.org>

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 NAMESPACE                   |    2 +-
 R/braidReports.R            |   41 ++++++++++++++++++++++++-----------------
 man/braidReports-package.Rd |    4 ++--
 5 files changed, 35 insertions(+), 28 deletions(-)

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New package biogeo with initial version 1.0
Package: biogeo
Type: Package
Title: Point Data Quality Assessment and Coordinate Conversion
Version: 1.0
Date: 2016-03-10
Author: Mark Robertson
Maintainer: Mark P. Robertson <markrobertsonsa@gmail.com>
Description: Functions for error detection and correction in point data quality datasets that are used in species distribution modelling. Includes functions for parsing and converting coordinates into decimal degrees from various formats.
LazyData: TRUE
License: GPL (>= 3)
URL: http://onlinelibrary.wiley.com/doi/10.1111/ecog.02118/abstract
Depends: R (>= 3.1.0)
Imports: raster, stringr, maptools, vegan, sp
Suggests: dismo (>= 0.9-3)
Packaged: 2016-04-07 17:57:01 UTC; User
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-04-08 10:43:59

More information about biogeo at CRAN
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