Title: Utilities for Sweave Together with TeX 'listings' Package
Description: Provides utilities for defining R / Rd as "language" for TeX-package "listings"
and for including R / Rd source file (snippets) copied from R-forge in its most
recent version (or another URL) thereby avoiding inconsistencies between vignette
and documented source code.
Author: Peter Ruckdeschel [cre, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between SweaveListingUtils versions 0.6.2 dated 2014-11-25 and 0.7.5 dated 2016-04-25
DESCRIPTION | 33 ++++++++++--------- MD5 | 54 ++++++++++++++++---------------- NAMESPACE | 4 +- R/keywordsRbyRobertDenham.R | 2 - R/lstset.R | 2 - build/vignette.rds |binary inst/MASKING | 2 - inst/NEWS | 1 inst/doc/ExampleSweaveListingUtils.R | 1 inst/doc/ExampleSweaveListingUtils.Rnw | 10 ++--- inst/doc/ExampleSweaveListingUtils.pdf |binary inst/try/try_Hausman.Rnw |only man/0SweaveListingUtils-package.Rd | 12 ++++--- man/SweaveListingMASK.Rd | 2 - man/SweaveListingOptions.Rd | 2 - man/SweaveListingPreparations.Rd | 5 +- man/changeKeywordstyles.Rd | 4 +- man/copySourceFromRForge.Rd | 4 +- man/isBaseOrRecommended.Rd | 4 +- man/lstinputSourceFromRForge.Rd | 2 - man/lstset.Rd | 2 - man/lstsetLanguage.Rd | 2 - man/readPackageVersion.Rd | 2 - man/readSourceFromRForge.Rd | 2 - man/setBaseOrRecommended.Rd | 4 +- man/setToBeDefinedPkgs.Rd | 2 - man/taglist.Rd | 2 - tests |only vignettes/ExampleSweaveListingUtils.Rnw | 10 ++--- 29 files changed, 93 insertions(+), 77 deletions(-)
More information about SweaveListingUtils at CRAN
Permanent link
Title: Simulation and Analysis of Random Fields
Description: Methods for the inference on and the simulation of Gaussian fields are provided, as well as methods for the simulation of extreme value random fields.
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Olga Moreva [aut], Christoph Berreth [ctr], Peter Menck [ctr], Sebastian Gross [ctr], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFields versions 3.1.11 dated 2016-04-23 and 3.1.12 dated 2016-04-25
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Class.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Fast and Simple Object Serialization to Protocol Buffers
Description: An optimized, permissively licensed C++ implementation for serializing
R objects to protocol-buffers. This lightweight package is complementary to the
much larger 'RProtoBuf' package which provides a full featured toolkit for
working with protocol-buffers in R.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between protolite versions 1.0 dated 2016-04-23 and 1.1 dated 2016-04-25
DESCRIPTION | 15 ++++++------- MD5 | 19 ++++++++-------- NEWS |only R/RcppExports.R | 4 +-- R/serialize_pb.R | 13 +++++++---- README.md | 13 ++++++++--- man/serialize_pb.Rd | 11 ++++++--- src/RcppExports.cpp | 7 +++--- src/serialize.cpp | 46 ++++++++++++++++++++-------------------- src/unserialize.cpp | 4 ++- tests/testthat/test-serialize.R | 20 +++++++++++------ 11 files changed, 91 insertions(+), 61 deletions(-)
Title: Fragment Analysis in R
Description: Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file and contains DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).
Author: Giovanny Covarrubias-Pazaran, Luis Diaz-Garcia, Brandon Schlautman, Walter Salazar, Juan Zalapa.
Maintainer: Giovanny Covarrubias-Pazaran <covarrubiasp@wisc.edu>
Diff between Fragman versions 1.0.3 dated 2016-03-16 and 1.0.4 dated 2016-04-25
DESCRIPTION | 8 +++---- MD5 | 48 +++++++++++++++++++++++----------------------- R/ladder.info.attach.R | 30 ++++++++++++++++++++++++++++ inst/CITATION | 12 +++++------ man/Fragman-package.Rd | 4 +-- man/arrange.jm.Rd | 2 + man/best.layout.Rd | 3 ++ man/big.peaks.col.Rd | 3 ++ man/detect.ladder.Rd | 3 ++ man/find.ladder.Rd | 2 + man/get.scores.Rd | 2 + man/jm.conv.Rd | 2 - man/ladder.corrector.Rd | 2 - man/ladder.info.attach.Rd | 2 - man/letter.to.jm.Rd | 2 + man/num.to.lett.Rd | 2 + man/overview.Rd | 2 + man/overview2.Rd | 2 - man/pullup.Rd | 2 + man/read.abif.Rd | 1 man/score.easy.Rd | 2 - man/separate.Rd | 2 + man/storing.inds.Rd | 2 - man/transfft.Rd | 2 + man/transp.Rd | 2 + 25 files changed, 102 insertions(+), 42 deletions(-)
Title: Relative Survival
Description: Various functions for relative survival analysis.
Author: Maja Pohar Perme [aut, cre], Klemen Pavlic [ctb]
Maintainer: Maja Pohar Perme <maja.pohar@mf.uni-lj.si>
Diff between relsurv versions 2.0-8 dated 2016-04-12 and 2.0-9 dated 2016-04-25
DESCRIPTION | 8 ++++---- MD5 | 40 +++++++++++++++++++++------------------- R/cmprel.r | 7 ++++++- data/colrec.rda |only data/slopop.rda |binary man/cmprel.Rd | 6 ++++-- man/colrec.Rd |only man/epa.Rd | 2 +- man/invtime.Rd | 2 +- man/nessie.Rd | 4 ++-- man/plotcmprel.Rd | 4 ++-- man/plotrszph.Rd | 2 +- man/resid.Rd | 2 +- man/rsadd.Rd | 6 +++--- man/rsbr.Rd | 2 +- man/rsdiff.Rd | 4 ++-- man/rsmul.Rd | 4 ++-- man/rssurv.Rd | 4 ++-- man/rssurvrsadd.Rd | 2 +- man/rstrans.Rd | 4 ++-- man/rszph.Rd | 2 +- man/transrate.Rd | 4 ++-- 22 files changed, 59 insertions(+), 50 deletions(-)
Title: R Interface to the CSDP Semidefinite Programming Library
Description: R interface to the CSDP semidefinite programming library. Installs version 6.1.1 of CSDP from the COIN-OR website if required. An existing installation of CSDP may be used by passing the proper configure arguments to the installation command. See the INSTALL file for further details.
Author: Hector Corrada Bravo (CSDP by Brian Borchers)
Maintainer: Hector Corrada Bravo <hcorrada@gmail.com>
Diff between Rcsdp versions 0.1.53-2 dated 2016-04-24 and 0.1.55 dated 2016-04-25
DESCRIPTION | 14 ++++++-------- MD5 | 7 ++++--- NAMESPACE | 3 +++ man/csdp.control.Rd |only man/readsdpa.Rd | 6 +++--- 5 files changed, 16 insertions(+), 14 deletions(-)
Title: Computational Geometry
Description: R interface to (some of) cddlib
(http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html).
Converts back and forth between two representations of a convex polytope:
as solution of a set of linear equalities and inequalities and as
convex hull of set of points and rays.
Also does linear programming and redundant generator elimination
(for example, convex hull in n dimensions). All functions can use exact
infinite-precision rational arithmetic.
Author: Charles J. Geyer <charlie@stat.umn.edu> and
Glen D. Meeden <glen@stat.umn.edu>, incorporates code from
cddlib (ver 0.94f) written by Komei Fukuda <fukuda@ifor.math.ethz.ch>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between rcdd versions 1.1-9 dated 2015-07-05 and 1.1-10 dated 2016-04-25
CHANGES | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- R/makeV.R | 23 ++++++++++++++++++----- build/vignette.rds |binary inst/doc/vinny.pdf |binary tests/make.R |only tests/make.Rout.save |only 8 files changed, 31 insertions(+), 14 deletions(-)
Title: Functions for Epidemiological Analysis using Population Data
Description: Enables computation of various epidemiological statistics where the use of population data such as population counts and hazards is required.
Relatively high computation speed achieved by using data.table.
Author: Joonas Miettinen [aut, cre],
Matti Rantanen [aut],
Karri Seppa [ctb]
Maintainer: Joonas Miettinen <joonas.miettinen@cancer.fi>
Diff between popEpi versions 0.3.0 dated 2016-03-31 and 0.3.1 dated 2016-04-25
DESCRIPTION | 8 MD5 | 222 - NAMESPACE | 124 NEWS | 228 - NEWS.md | 203 - R/S3_definitions.R | 2454 ++++++++++--------- R/aggregating.R | 1200 ++++----- R/data_document.R | 278 +- R/direct_adjusting.R | 304 +- R/flexyargs.R | 334 +- R/incidence_rates.R | 790 +++--- R/lexpand.R | 1862 +++++++------- R/lifetime_function.R | 564 ++-- R/ltable.R | 504 ++-- R/mean_survival.R | 1274 +++++----- R/popEpi_package.r | 64 R/pophaz.R | 136 - R/relative_poisson.R | 818 +++--- R/relative_poisson_net_survival.R | 348 +- R/sir_devaus.R | 2366 +++++++++---------- R/splitLexisDT.R | 482 +-- R/splitMulti.R | 462 +-- R/splitting_utility_functions.R | 2182 ++++++++--------- R/startup_message.R | 30 R/survival_aggregated.R | 2130 ++++++++--------- R/survival_lexis.R | 962 +++---- R/survival_utility_functions.R | 1279 +++++----- R/utility_functions.R | 3476 ++++++++++++++-------------- R/weighted_table.R | 1312 +++++----- README.md | 382 +-- build/vignette.rds |binary inst/doc/sir.R | 128 - inst/doc/sir.html | 480 +-- inst/doc/survtab_examples.R | 338 +- inst/doc/survtab_examples.html | 728 ++--- man/ICSS.Rd | 56 man/RPL.Rd | 36 man/adjust.Rd | 50 man/aggre.Rd | 364 +- man/all_names_present.Rd | 64 man/as.Date.yrs.Rd | 82 man/as.aggre.Rd | 128 - man/as.data.frame.ratetable.Rd | 66 man/as.data.table.ratetable.Rd | 66 man/cast_simple.Rd | 102 man/cut_bound.Rd | 58 man/direct_standardization.Rd | 294 +- man/fac2num.Rd | 76 man/flexible_argument.Rd | 336 +- man/get.yrs.Rd | 134 - man/is.Date.Rd | 82 man/is_leap_year.Rd | 58 man/lexpand.Rd | 724 ++--- man/lines.sirspline.Rd | 82 man/lines.survmean.Rd | 64 man/lines.survtab.Rd | 110 man/longDF2ratetable.Rd | 62 man/lower_bound.Rd | 38 man/ltable.Rd | 288 +- man/makeWeightsDT.Rd | 306 +- man/na2zero.Rd | 56 man/plot.sir.Rd | 152 - man/plot.sirspline.Rd | 90 man/plot.survmean.Rd | 70 man/plot.survtab.Rd | 116 man/poisson.ci.Rd | 54 man/popEpi.Rd | 76 man/pophaz.Rd | 116 man/popmort.Rd | 42 man/prepExpo.Rd | 212 - man/print.aggre.Rd | 56 man/print.sir.Rd | 40 man/print.sirspline.Rd | 40 man/print.survtab.Rd | 56 man/rate.Rd | 196 - man/relpois.Rd | 214 - man/relpois_ag.Rd | 158 - man/robust_values.Rd | 92 man/rpcurve.Rd | 136 - man/setaggre.Rd | 80 man/setclass.Rd | 56 man/setcolsnull.Rd | 66 man/shift.var.Rd | 72 man/sibr.Rd | 62 man/sir.Rd | 368 +- man/sire.Rd | 60 man/sirspline.Rd | 266 +- man/splitLexisDT.Rd | 170 - man/splitMulti.Rd | 252 +- man/stdpop101.Rd | 36 man/stdpop18.Rd | 38 man/summary.aggre.Rd | 56 man/summary.survtab.Rd | 150 - man/survmean.Rd | 544 ++-- man/survtab_ag.Rd | 794 +++--- man/try2int.Rd | 56 tests/testthat.R | 8 tests/testthat/test_aggre.R | 462 +-- tests/testthat/test_expo.R | 94 tests/testthat/test_lexpand.R | 642 ++--- tests/testthat/test_mean_survival.R | 696 ++--- tests/testthat/test_rate.R | 372 +- tests/testthat/test_relpois_mean_curve.R | 136 - tests/testthat/test_sir.R | 374 +-- tests/testthat/test_splitLexisDT.R | 238 - tests/testthat/test_splitMulti.R | 198 - tests/testthat/test_survtab_bad_surv_ints.R | 190 - tests/testthat/test_survtab_observed.R | 258 +- tests/testthat/test_survtab_relative.R | 382 +-- tests/testthat/test_survtab_usage.R | 510 ++-- tests/testthat/test_utils.R | 768 +++--- tests/testthat/test_weighter.R | 278 +- 112 files changed, 21472 insertions(+), 21410 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 1.8-0 dated 2016-03-24 and 1.8-2 dated 2016-04-25
DESCRIPTION | 8 MD5 | 142 - NAMESPACE | 260 +-- R/RcppExports.R | 14 R/TheilSen.R | 1332 ++++++++--------- R/aqStats.R | 678 ++++---- R/checkPrep.R | 316 ++-- R/conditionalEval.R | 6 R/conditionalQuantile.R | 4 R/cutData.R | 1142 +++++++------- R/importAURN.R | 873 ++++++----- R/importKCL.R | 675 ++++---- R/polarPlot.R | 2001 +++++++++++++------------- R/scatterPlot.R | 3434 ++++++++++++++++++++++----------------------- R/smoothTrend.R | 1062 ++++++------- R/timeAverage.R | 1128 +++++++------- R/timeProp.R | 792 +++++----- R/utilities.R | 2042 +++++++++++++------------- R/windRose.R | 1670 ++++++++++----------- man/GoogleMapsPlot.Rd | 444 ++--- man/TaylorDiagram.Rd | 572 +++---- man/TheilSen.Rd | 576 +++---- man/airbaseFindCode.Rd | 174 +- man/airbaseInfo.Rd | 84 - man/airbaseSplice.Rd | 122 - man/airbaseStats.Rd | 536 +++---- man/aqStats.Rd | 200 +- man/calcFno2.Rd | 228 +- man/calcPercentile.Rd | 136 - man/calendarPlot.Rd | 438 ++--- man/conditionalEval.Rd | 404 ++--- man/conditionalQuantile.Rd | 340 ++-- man/corPlot.Rd | 312 ++-- man/cutData.Rd | 314 ++-- man/drawOpenKey.Rd | 374 ++-- man/import.Rd | 250 +-- man/importADMS.Rd | 326 ++-- man/importAURN.Rd | 773 +++++----- man/importAURNCsv.Rd | 364 ++-- man/importAirbase.Rd | 166 +- man/importKCL.Rd | 1027 +++++++------ man/importMeta.Rd | 138 - man/importSAQN.Rd | 364 ++-- man/importTraj.Rd | 304 +-- man/kernelExceed.Rd | 312 ++-- man/linearRelation.Rd | 308 ++-- man/modStats.Rd | 304 +-- man/mydata.Rd | 108 - man/openColours.Rd | 182 +- man/openair.Rd | 192 +- man/percentileRose.Rd | 392 ++--- man/polarAnnulus.Rd | 534 +++--- man/polarCluster.Rd | 364 ++-- man/polarFreq.Rd | 438 ++--- man/polarPlot.Rd | 854 +++++------ man/quickText.Rd | 98 - man/rollingMean.Rd | 136 - man/scatterPlot.Rd | 754 ++++----- man/selectByDate.Rd | 170 +- man/selectRunning.Rd | 118 - man/smoothTrend.Rd | 474 +++--- man/splitByDate.Rd | 90 - man/summaryPlot.Rd | 332 ++-- man/timeAverage.Rd | 434 ++--- man/timePlot.Rd | 626 ++++---- man/timeProp.Rd | 314 ++-- man/timeVariation.Rd | 628 ++++---- man/trajCluster.Rd | 296 +-- man/trajLevel.Rd | 530 +++--- man/trajPlot.Rd | 352 ++-- man/trendLevel.Rd | 428 ++--- man/windRose.Rd | 606 +++---- 72 files changed, 18600 insertions(+), 18319 deletions(-)
Title: Matrix Correlation Coefficients
Description: Computation and visualization of matrix correlation coefficients.
The main method is the Similarity of Matrices Index, while various related
measures like r1, r2, r3, r4, Yanai's GCD, RV, RV2 and adjusted RV are included
for comparison.
Author: Kristian Hovde Liland [aut, cre],
Tormod Næs [ctb],
Ulf Geir Indahl [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nofima.no>
Diff between MatrixCorrelation versions 0.8.0 dated 2016-03-16 and 0.8.1 dated 2016-04-25
DESCRIPTION | 14 +++++++------- MD5 | 31 +++++++++++++++++-------------- NAMESPACE | 6 +++++- R/RV.R | 40 +++++++++++++++++++++++++++++++++++++--- R/SMI.R | 17 ++++++++++------- R/SMI_results.R | 2 +- R/SMI_significance.R | 2 +- R/candy.R | 2 +- R/cor.test_eq.R |only R/rx.R | 2 +- inst |only man/RV.Rd | 15 +++++++++++++-- man/SMI.Rd | 2 +- man/candy.Rd | 2 +- man/cor.test_eq.Rd |only man/plot.SMI.Rd | 2 +- man/r1.Rd | 2 +- man/significant.Rd | 2 +- 18 files changed, 98 insertions(+), 43 deletions(-)
More information about MatrixCorrelation at CRAN
Permanent link
Title: Covariance Matrix Estimation and Regularization for Finance
Description: Estimation and regularization for covariance matrix of asset
returns. For covariance matrix estimation, three major types of factor
models are included: macroeconomic factor model, fundamental factor model and
statistical factor model. For covariance matrix regularization, four regularized
estimators are included: banding, tapering, hard-thresholding and soft-
thresholding. The tuning parameters of these regularized estimators are selected
via cross-validation.
Author: YaChen Yan [aut, cre],
FangZhu Lin [aut]
Maintainer: YaChen Yan <yanyachen21@gmail.com>
Diff between FinCovRegularization versions 1.0.0 dated 2015-03-01 and 1.1.0 dated 2016-04-25
FinCovRegularization-1.0.0/FinCovRegularization/README.md |only FinCovRegularization-1.1.0/FinCovRegularization/DESCRIPTION | 31 ++- FinCovRegularization-1.1.0/FinCovRegularization/MD5 | 81 ++++------ FinCovRegularization-1.1.0/FinCovRegularization/NAMESPACE | 7 FinCovRegularization-1.1.0/FinCovRegularization/R/F.norm2.R | 2 FinCovRegularization-1.1.0/FinCovRegularization/R/FundamentalFactor.Cov.R | 40 ++-- FinCovRegularization-1.1.0/FinCovRegularization/R/GMVP.R | 16 - FinCovRegularization-1.1.0/FinCovRegularization/R/Generic.CovCv.R | 38 ++-- FinCovRegularization-1.1.0/FinCovRegularization/R/Ind.Cov.R | 7 FinCovRegularization-1.1.0/FinCovRegularization/R/MacroFactor.Cov.R | 28 +-- FinCovRegularization-1.1.0/FinCovRegularization/R/O.norm2.R | 2 FinCovRegularization-1.1.0/FinCovRegularization/R/RiskParity.R | 19 +- FinCovRegularization-1.1.0/FinCovRegularization/R/StatFactor.Cov.R | 18 +- FinCovRegularization-1.1.0/FinCovRegularization/R/banding.R | 8 FinCovRegularization-1.1.0/FinCovRegularization/R/banding.cv.R | 47 ++--- FinCovRegularization-1.1.0/FinCovRegularization/R/hard.thresholding.R | 4 FinCovRegularization-1.1.0/FinCovRegularization/R/soft.thresholding.R | 6 FinCovRegularization-1.1.0/FinCovRegularization/R/tapering.R | 18 +- FinCovRegularization-1.1.0/FinCovRegularization/R/tapering.cv.R | 50 +++--- FinCovRegularization-1.1.0/FinCovRegularization/R/threshold.cv.R | 67 ++++---- FinCovRegularization-1.1.0/FinCovRegularization/R/threshold.min.R | 29 +-- FinCovRegularization-1.1.0/FinCovRegularization/man/F.norm2.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/FinCovRegularization.Rd | 16 - FinCovRegularization-1.1.0/FinCovRegularization/man/FundamentalFactor.Cov.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/GMVP.Rd | 6 FinCovRegularization-1.1.0/FinCovRegularization/man/Ind.Cov.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/MacroFactor.Cov.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/O.norm2.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/RiskParity.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/StatFactor.Cov.Rd | 6 FinCovRegularization-1.1.0/FinCovRegularization/man/banding.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/banding.cv.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/hard.thresholding.Rd | 4 FinCovRegularization-1.1.0/FinCovRegularization/man/m.excess.c10sp9003.Rd | 4 FinCovRegularization-1.1.0/FinCovRegularization/man/plot.CovCv.Rd | 3 FinCovRegularization-1.1.0/FinCovRegularization/man/print.CovCv.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/soft.thresholding.Rd | 4 FinCovRegularization-1.1.0/FinCovRegularization/man/summary.CovCv.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/tapering.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/tapering.cv.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/threshold.cv.Rd | 2 FinCovRegularization-1.1.0/FinCovRegularization/man/threshold.min.Rd | 2 42 files changed, 306 insertions(+), 283 deletions(-)
More information about FinCovRegularization at CRAN
Permanent link
Title: Doubly Robust Generalized Estimating Equations
Description: Fit restricted mean models for the conditional association
between an exposure and an outcome, given covariates. Three methods
are implemented: O-estimation, where a nuisance model for the
association between the covariates and the outcome is used;
E-estimation where a nuisance model for the association
between the covariates and the exposure is used, and doubly robust (DR)
estimation where both nuisance models are used. In DR-estimation,
the estimates will be consistent when at least one of the nuisance
models is correctly specified, not necessarily both.
Author: Johan Zetterqvist <johan.zetterqvist@ki.se> , Arvid Sjölander <arvid.sjolander@ki.se> with contributions from Alexander Ploner.
Maintainer: Johan Zetterqvist <johan.zetterqvist@ki.se>
Diff between drgee versions 1.1.4 dated 2016-01-13 and 1.1.5 dated 2016-04-25
DESCRIPTION | 8 +-- MD5 | 36 ++++++++-------- R/condit.R | 102 +++++++++++++++++++++++++++++++++++----------- R/drFit.R | 13 +++-- R/dreFit.R | 120 +++++++++++++++++++++++++++++++++---------------------- R/dreFitCond.R | 40 +++++++++++++----- R/drgee.R | 13 +++-- R/drgeeData.R | 78 +++++++++++++++++++---------------- R/eFit.R | 4 - R/findRoots.R | 8 ++- R/gee.R | 48 +++++++++++++++++----- R/geeFit.R | 3 - R/geeFitCond.R | 43 ++++++++++++++----- R/oFit.R | 6 +- R/robVcov.R | 6 ++ man/drgee.Rd | 2 man/drgeeData.Rd | 1 man/gee.Rd | 6 +- src/center.cpp | 20 ++++++++- 19 files changed, 371 insertions(+), 186 deletions(-)
Title: The Bee Swarm Plot, an Alternative to Stripchart
Description: The bee swarm plot is a one-dimensional scatter plot like "stripchart", but with closely-packed, non-overlapping points.
Author: Aron Eklund
Maintainer: Aron Eklund <eklund@cbs.dtu.dk>
Diff between beeswarm versions 0.2.1 dated 2015-08-29 and 0.2.3 dated 2016-04-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 12 ++++++++++++ R/beeswarm.R | 29 +++++++++++++++++++++-------- man/beeswarm.Rd | 10 ++++++---- 5 files changed, 47 insertions(+), 20 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 0.0-30 dated 2016-02-19 and 0.0-31 dated 2016-04-25
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- R/log.R | 7 ++++++- inst |only tests/Rplots.pdf |only 5 files changed, 14 insertions(+), 7 deletions(-)
Title: Perform Common JavaScript Operations in Shiny Apps using Plain R
Code
Description: Perform common JavaScript operations in Shiny applications without
having to know any JavaScript. Examples include: hiding an element, disabling
an input, resetting an input back to its original value, delaying code execution
by a few seconds, and many more useful functions. 'shinyjs' also includes
a colour picker widget, a colour picker RStudio addin, and can also be used to
easily run your own custom JavaScript functions from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyjs versions 0.5.2 dated 2016-03-27 and 0.6 dated 2016-04-25
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 14 ++++++++++++++ R/extendShinyjs.R | 8 ++++++-- README.md | 33 ++++++++++++++++++--------------- inst/doc/overview.Rmd | 12 ++++++------ inst/doc/overview.html | 27 +++++++++++++++------------ inst/srcjs/shinyjs-default-funcs.js | 9 +++++++-- vignettes/overview.Rmd | 12 ++++++------ 9 files changed, 83 insertions(+), 54 deletions(-)
Title: SEER and Atomic Bomb Survivor Data Analysis Tools
Description: Creates SEER (Surveillance, Epidemiology and End Results) and A-bomb data binaries
from ASCII sources and provides tools for estimating SEER second cancer risks.
Author: Tomas Radivoyevitch
Maintainer: Tomas Radivoyevitch <radivot@ccf.org>
Diff between SEERaBomb versions 2015.2 dated 2015-09-07 and 2016.1 dated 2016-04-25
SEERaBomb-2015.2/SEERaBomb/inst/doc/examples/incidAllBaseGraphics.R |only SEERaBomb-2015.2/SEERaBomb/inst/doc/examples/mkRRtsd.R |only SEERaBomb-2015.2/SEERaBomb/inst/doc/papers/radiatEnvironBiophys2013 |only SEERaBomb-2016.1/SEERaBomb/DESCRIPTION | 10 SEERaBomb-2016.1/SEERaBomb/MD5 | 144 +++-- SEERaBomb-2016.1/SEERaBomb/NEWS | 32 + SEERaBomb-2016.1/SEERaBomb/R/RcppExports.R | 4 SEERaBomb-2016.1/SEERaBomb/R/csd.R |only SEERaBomb-2016.1/SEERaBomb/R/getDF.R |only SEERaBomb-2016.1/SEERaBomb/R/getFields.R | 14 SEERaBomb-2016.1/SEERaBomb/R/mapCancs.R | 6 SEERaBomb-2016.1/SEERaBomb/R/mkExcel2.R |only SEERaBomb-2016.1/SEERaBomb/R/mkSEER.R | 54 + SEERaBomb-2016.1/SEERaBomb/R/mkSEERold.R | 14 SEERaBomb-2016.1/SEERaBomb/R/msd.R |only SEERaBomb-2016.1/SEERaBomb/R/pickFields.R | 9 SEERaBomb-2016.1/SEERaBomb/R/post1PYOc.R |only SEERaBomb-2016.1/SEERaBomb/R/post1PYOm.R |only SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/aBombDplyr.R | 5 SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/casesPerYearInUS.R | 9 SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/incidAllgg.R | 60 +- SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/lungIncid.R | 21 SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/lungSurv.R | 5 SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/mk2Dsplines.R | 3 SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/mkDataBinaries.R | 16 SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/poisRegCI.R | 9 SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/registryDiffs.R | 36 - SEERaBomb-2016.1/SEERaBomb/inst/doc/examples/seerDplyr.R | 35 - SEERaBomb-2016.1/SEERaBomb/inst/doc/fieldNames.html | 275 ++++------ SEERaBomb-2016.1/SEERaBomb/inst/doc/overview.pdf |binary SEERaBomb-2016.1/SEERaBomb/inst/doc/papers/AAPSJ2016 |only SEERaBomb-2016.1/SEERaBomb/inst/doc/papers/JCO2013/MDSAMLsurvMF.R | 4 SEERaBomb-2016.1/SEERaBomb/inst/doc/papers/REB2014 |only SEERaBomb-2016.1/SEERaBomb/inst/doc/papers/blood2012/blood2012fig5a.R | 4 SEERaBomb-2016.1/SEERaBomb/inst/doc/papers/blood2012/vIncidAPLCML.r | 4 SEERaBomb-2016.1/SEERaBomb/inst/doc/papers/leukemia2016 |only SEERaBomb-2016.1/SEERaBomb/inst/doc/papers/leukemiaRes2016 |only SEERaBomb-2016.1/SEERaBomb/man/SEERaBomb-package.Rd | 3 SEERaBomb-2016.1/SEERaBomb/man/csd.Rd |only SEERaBomb-2016.1/SEERaBomb/man/figures/mkSEERfig.png |binary SEERaBomb-2016.1/SEERaBomb/man/fillPYM.Rd | 15 SEERaBomb-2016.1/SEERaBomb/man/getDF.Rd |only SEERaBomb-2016.1/SEERaBomb/man/mk2D.Rd | 2 SEERaBomb-2016.1/SEERaBomb/man/mkDF.Rd | 8 SEERaBomb-2016.1/SEERaBomb/man/mkExcel.Rd | 10 SEERaBomb-2016.1/SEERaBomb/man/mkExcel2.Rd |only SEERaBomb-2016.1/SEERaBomb/man/msd.Rd |only SEERaBomb-2016.1/SEERaBomb/man/nvsr.Rd | 7 SEERaBomb-2016.1/SEERaBomb/man/nvsr01.Rd | 4 SEERaBomb-2016.1/SEERaBomb/man/pickFields.Rd | 17 SEERaBomb-2016.1/SEERaBomb/man/post1PYOc.Rd |only SEERaBomb-2016.1/SEERaBomb/man/post1PYOm.Rd |only SEERaBomb-2016.1/SEERaBomb/man/print.seerSet.summary.Rd | 5 SEERaBomb-2016.1/SEERaBomb/man/simSeerSet.Rd | 15 SEERaBomb-2016.1/SEERaBomb/man/summary.seerSet.Rd | 3 SEERaBomb-2016.1/SEERaBomb/man/tsd.Rd | 7 SEERaBomb-2016.1/SEERaBomb/src/RcppExports.cpp | 8 SEERaBomb-2016.1/SEERaBomb/src/fillPYM.cpp | 5 58 files changed, 494 insertions(+), 388 deletions(-)
Title: Implementation of Random Variables
Description: Implements random variables by means of S4 classes and methods.
Author: Matthias Kohl, Peter Ruckdeschel
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RandVar versions 0.9.2 dated 2013-09-11 and 1.0 dated 2016-04-25
DESCRIPTION | 21 MD5 | 26 NAMESPACE | 1 R/util.R | 2 build/vignette.rds |binary inst/NEWS | 10 inst/doc/RandVar.R | 84 - inst/doc/RandVar.Rnw | 565 +++--- inst/doc/RandVar.pdf |binary man/0RandVar-package.Rd | 17 man/util.Rd | 2 tests/tests.R | 1 tests/tests.Rout.save | 3957 +++++++++++++++++++++++------------------------- vignettes/RandVar.Rnw | 565 +++--- 14 files changed, 2630 insertions(+), 2621 deletions(-)
Title: Programming with Big Data -- Interface to ZeroMQ
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.1.0 rc1)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.2-1 dated 2016-01-21 and 0.2-2 dated 2016-04-25
ChangeLog | 11 ++++ DESCRIPTION | 8 +-- MD5 | 66 +++++++++++++------------ NAMESPACE | 6 ++ R/111_pbd_opt.r | 2 R/222_export_env.r | 13 ++--- R/222_export_opt.r | 44 ++++++++++------ R/R_zmq_poll.r | 31 ++++++++++- R/R_zmq_poll2.r |only R/R_zmq_socket.r | 35 +++++++++---- R/R_zmq_utility.r | 3 - R/get_conf.r | 109 ++++++++++++++++++++++++++++++++---------- README.md | 5 + demo/00Index | 3 + demo/iter_next.r |only demo/iter_try.r |only demo/mspoller.r | 4 - demo/mspoller2.r |only inst/doc/pbdZMQ-guide.pdf |binary man/a0_b_control.Rd | 3 - man/a0_b_pbd_opt.Rd | 2 man/a0_c_options.Rd | 16 +++++- man/b3_poll.Rd | 16 +++++- man/b4_poll2.Rd |only src/Makevars.in | 4 + src/Makevars.win | 4 - src/R_zmq.h | 2 src/R_zmq_context.c | 4 - src/R_zmq_message.c | 16 +++--- src/R_zmq_poll.c | 23 +++++--- src/R_zmq_poll2.c |only src/R_zmq_sendrecv.c | 4 - src/R_zmq_socket.c | 12 ++-- src/R_zmq_utility.c | 1 src/zmqsrc.win32/src_Makefile | 14 +++-- src/zmqsrc.win64/src_Makefile | 13 ++--- src/zzz.c | 2 37 files changed, 322 insertions(+), 154 deletions(-)
Title: A GUI for Missing Data Exploration
Description: Provides numeric and graphical
summaries for the missing values from both categorical
and quantitative variables. A variety of imputation
methods are applied, including the univariate imputations
like fixed or random values, multivariate imputations
like the nearest neighbors and multiple imputations,
and imputations conditioned on a categorical variable.
Author: Xiaoyue Cheng, Dianne Cook, Heike Hofmann
Maintainer: Xiaoyue Cheng <xycheng@unomaha.edu>
Diff between MissingDataGUI versions 0.2-4 dated 2015-12-27 and 0.2-5 dated 2016-04-25
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 5 +++++ R/WatchMissingValues.r | 16 +++++++++++++--- R/utils.r | 2 +- build/vignette.rds |binary inst/doc/introduction.pdf |binary 7 files changed, 29 insertions(+), 14 deletions(-)
More information about MissingDataGUI at CRAN
Permanent link
Title: Robust Linear Quantile Regression
Description: It fits a robust linear quantile regression model using a new
family of zero-quantile distributions for the error term. This family of
distribution includes skewed versions of the Normal, Student's t, Laplace, Slash
and Contaminated Normal distribution. It provides estimates and full inference.
It also provides envelopes plots for assessing the fit and confidences bands
when several quantiles are provided simultaneously.
Author: Christian E. Galarza, Luis Benites, Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between lqr versions 1.1 dated 2015-12-09 and 1.2 dated 2016-04-25
DESCRIPTION | 18 +++-- MD5 | 18 +++-- NAMESPACE | 6 - R/EM2.R |only R/FUNCTION.R | 4 - R/auxiliar.R | 179 +++++++++++++++++++++++++++++++++++++------------- R/bestlqr.R |only R/pdqr.R |only man/SKD.Rd |only man/best.lqr.Rd |only man/dist.Truncated.Rd |only man/lqr-package.Rd | 2 man/lqr.Rd | 72 ++++++++++++++++++-- 13 files changed, 229 insertions(+), 70 deletions(-)