Title: (Fuzzy) AHP Calculation
Description: Calculation of AHP (Analytic Hierarchy Process - <http://
en.wikipedia.org/wiki/Analytic_hierarchy_process>) with classic and fuzzy
weights based on Saaty's pairwise comparison method for determination of
weights.
Author: Jan Caha [aut, cre],
Aneta Drážná [ctb, com]
Maintainer: Jan Caha <cahik@atlas.cz>
Diff between FuzzyAHP versions 0.6.1 dated 2016-04-06 and 0.7.1 dated 2016-04-26
DESCRIPTION | 17 +- MD5 | 76 ++++++----- NAMESPACE | 5 R/class-FuzzyData.R | 26 +++ R/class-FuzzyPairwiseComparisonMatrix.R | 166 ++++++++++++++++++++++++- R/class-FuzzyWeights.R | 9 + R/class-PairwiseComparisonMatrix.R | 132 ++++++++++++++----- R/function-calculateWeights.R | 2 R/function-compare.R | 41 ++++++ R/function-consistencyIndex.R |only R/function-consistencyRatio.R | 81 +++++++++--- R/function-defuzzify.R | 35 ++++- R/function-insertInto.R |only R/function-internal-optimization.R | 36 ++--- R/function-print.R | 17 ++ R/function-strictConsistency.R | 32 +++- R/function-weakConsistency.R | 36 +++-- inst/doc/examples.R | 16 +- inst/doc/examples.Rmd | 29 ++-- inst/doc/examples.html | 81 ++++++++---- inst/doc/main-info.Rmd | 2 inst/doc/main-info.html | 12 - man/FuzzyPairwiseComparisonMatrix-class.Rd | 2 man/PairwiseComparisonMatrix-class.Rd | 2 man/compareResults-methods.Rd |only man/consistencyIndex-methods.Rd |only man/consistencyRatio-methods.Rd | 20 ++- man/defuzziffy-methods.Rd | 19 ++ man/fuzzyData-methods.Rd | 8 - man/fuzzyPairwiseComparisonMatrix-methods.Rd | 13 + man/fuzzyPairwiseComparisonMatrix1-methods.Rd |only man/insertInto-methods.Rd |only man/pairwiseComparisonMatrix-methods.Rd | 8 + man/strictConsistency-methods.Rd | 13 + man/weakConsistency-methods.Rd | 15 +- tests/testthat/test_calculateAHP.R | 7 + tests/testthat/test_consistencyRatio.R | 4 tests/testthat/test_fuzzy_AHP.R | 42 ++++-- tests/testthat/test_pairwiseComparisonMatrix.R | 17 +- vignettes/ahp-bibliography.bib | 29 ++++ vignettes/examples.Rmd | 29 ++-- vignettes/main-info.Rmd | 2 42 files changed, 841 insertions(+), 240 deletions(-)
Title: A Powerful Tool to Quickly Compare Huge Lists and Draw Venn
Diagrams
Description: Compare lists (from 2 to infinite) and plot the results in a Venn diagram if (N<=4) with regulation details. It allows to produce a complete annotated file, merging the annotations of the compared lists. It is also possible to compute an overlaps table to show the overlaps proportions of all the couples of lists and draw proportional Venn diagrams.
Author: Nicolas Cagnard
Maintainer: Nicolas Cagnard <nicolas.cagnard@gmail.com>
Diff between eVenn versions 2.3 dated 2016-03-29 and 2.3.1 dated 2016-04-26
DESCRIPTION | 8 - MD5 | 12 - R/autoevenn.R | 19 +- R/evenn.R | 380 +++++++++++++++++++++++++++++++-------------------- man/autoevenn.Rd | 53 +++++-- man/eVenn-package.Rd | 4 man/evenn.Rd | 20 ++ 7 files changed, 316 insertions(+), 180 deletions(-)
Title: Variable Selection Using Random Forests
Description: Three steps variable selection procedure based on random forests.
Initially developed to handle high dimensional data (for which number of
variables largely exceeds number of observations), the package is very
versatile and can treat most dimensions of data, for regression and
supervised classification problems. First step is dedicated to eliminate
irrelevant variables from the dataset. Second step aims to select all
variables related to the response for interpretation purpose. Third step
refines the selection by eliminating redundancy in the set of variables
selected by the second step, for prediction purpose.
Author: Robin Genuer [aut, cre],
Jean-Michel Poggi [aut],
Christine Tuleau-Malot [aut]
Maintainer: Robin Genuer <Robin.Genuer@isped.u-bordeaux2.fr>
Diff between VSURF versions 1.0.2 dated 2015-10-15 and 1.0.3 dated 2016-04-26
VSURF-1.0.2/VSURF/tests/testthat/test_iris_parallel.R |only VSURF-1.0.3/VSURF/DESCRIPTION | 11 ++-- VSURF-1.0.3/VSURF/MD5 | 45 ++++++++---------- VSURF-1.0.3/VSURF/NAMESPACE | 3 - VSURF-1.0.3/VSURF/NEWS | 9 +++ VSURF-1.0.3/VSURF/R/VSURF.R | 9 ++- VSURF-1.0.3/VSURF/R/VSURF_interp.R | 4 + VSURF-1.0.3/VSURF/R/VSURF_pred.R | 4 + VSURF-1.0.3/VSURF/R/VSURF_thres.R | 16 ++++++ VSURF-1.0.3/VSURF/R/plot.VSURF.R | 3 + VSURF-1.0.3/VSURF/R/predict.VSURF.R | 3 + VSURF-1.0.3/VSURF/R/print.VSURF.R | 3 + VSURF-1.0.3/VSURF/R/summary.VSURF.R | 4 + VSURF-1.0.3/VSURF/R/tune.R | 3 + VSURF-1.0.3/VSURF/man/VSURF.Rd | 18 ++++--- VSURF-1.0.3/VSURF/man/VSURF_interp.Rd | 10 +++- VSURF-1.0.3/VSURF/man/VSURF_pred.Rd | 10 +++- VSURF-1.0.3/VSURF/man/VSURF_thres.Rd | 12 +++- VSURF-1.0.3/VSURF/man/plot.VSURF.Rd | 8 ++- VSURF-1.0.3/VSURF/man/predict.VSURF.Rd | 8 ++- VSURF-1.0.3/VSURF/man/print.VSURF.Rd | 8 ++- VSURF-1.0.3/VSURF/man/summary.VSURF.Rd | 8 ++- VSURF-1.0.3/VSURF/man/toys.Rd | 3 - VSURF-1.0.3/VSURF/man/tune.Rd | 8 ++- 24 files changed, 157 insertions(+), 53 deletions(-)
Title: Vector Analysis using Graphical and Analytical Methods in 2D
Description: A 2D statistical analysis is performed, both numerical and graphical, of a set of vectors. Since a vector has two components (module and azimuth) vector analysis is performed in three stages: modules are analyzed by means of linear statistics, azimuths are analyzed by circular statistics, and the joint analysis of modules and azimuths is done using density maps that allow detecting another distribution properties (i.e. anisotropy) and outliers. Tests and circular statistic parameters have associated a full range of graphing: histograms, maps of distributions, point maps, vector maps, density maps, distribution modules and azimuths.
Author: Ruiz-Cuetos J.C., Felicisimo A.M., Cuartero A., Polo M.E., Rodriguez P.G., Haut J.M.
Maintainer: Pablo Garcia Rodriguez <pablogr@unex.es>
Diff between VecStatGraphs2D versions 1.7 dated 2014-02-05 and 1.8 dated 2016-04-26
VecStatGraphs2D-1.7/VecStatGraphs2D/data/MeasuredRealData.txt |only VecStatGraphs2D-1.7/VecStatGraphs2D/man/MeasuredRealData.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/DESCRIPTION | 14 - VecStatGraphs2D-1.8/VecStatGraphs2D/MD5 | 84 ++++++++-- VecStatGraphs2D-1.8/VecStatGraphs2D/NAMESPACE | 7 VecStatGraphs2D-1.8/VecStatGraphs2D/R/DrawDistribution.R | 2 VecStatGraphs2D-1.8/VecStatGraphs2D/R/VonMisesParameter.R | 19 +- VecStatGraphs2D-1.8/VecStatGraphs2D/data/MeasuredRealData.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/RectangularData.txt |binary VecStatGraphs2D-1.8/VecStatGraphs2D/data/casiunifor.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/casiuniforpolar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/casiuniforpolardir1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/concentra.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/concentrapolar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos1.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos1050.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos1050.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos1050polar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos1polar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos2.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos2.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos2polar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos3.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos3.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos3polar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos4.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos4.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos4polar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/datos4polardir1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/mabel51polar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/mabel61polar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/masdatos.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/masdatos.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/masdatospolar.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/muchocero.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/muchocero1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/simple.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/vectores.1.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/data/vient.txt |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/DrawVectors.Rd | 38 ++++ VecStatGraphs2D-1.8/VecStatGraphs2D/man/LoadData.Rd | 70 ++++++++ VecStatGraphs2D-1.8/VecStatGraphs2D/man/MeasuredRealData.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/VecStatGraphs2D-internal.Rd | 2 VecStatGraphs2D-1.8/VecStatGraphs2D/man/VecStatGraphs2D-package.Rd | 10 + VecStatGraphs2D-1.8/VecStatGraphs2D/man/casiunifor.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/casiuniforpolar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/casiuniforpolardir1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/concentra.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/concentrapolar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos1.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos1050.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos1050.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos1050polar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos1polar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos2.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos2.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos2polar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos3.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos3.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos3polar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos4.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos4.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos4polar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/datos4polardir1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/mabel51polar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/mabel61polar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/masdatos.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/masdatos.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/masdatospolar.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/muchocero.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/muchocero1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/simple.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/vectores.1.Rd |only VecStatGraphs2D-1.8/VecStatGraphs2D/man/vient.Rd |only 76 files changed, 212 insertions(+), 34 deletions(-)
More information about VecStatGraphs2D at CRAN
Permanent link
Title: The Transfer Entropy Package
Description: Estimates the transfer entropy from one time series to another, where each time series consists of continuous random variables. The transfer entropy is an extension of mutual information which takes into account the direction of information flow, under the assumption that the underlying processes can be described by a Markov model. Two estimation methods are provided. The first calculates transfer entropy as the difference of mutual information. Mutual information is estimated using the Kraskov method, which builds on a nearest-neighbor framework (see package references). The second estimation method estimate transfer entropy via the a generalized correlation sum.
Author: ANN Library: David Mount, Sunil Arya (see src/ann_1.1.2/Copyright.txt).
Transfer Entropy Packge: Ghazaleh Haratinezhad Torbati, Glenn Lawyer.
Maintainer: Ghazaleh Haratinezhad Torbati <ghazale.hnt@gmail.com>
Diff between TransferEntropy versions 1.2 dated 2016-01-01 and 1.4 dated 2016-04-26
DESCRIPTION | 8 ++--- MD5 | 10 +++---- R/RcppExports.R | 2 - build/partial.rdb |binary man/computeTE.Rd | 2 - src/compute_TE.cpp | 72 ++++++++++++++++++++++++++--------------------------- 6 files changed, 47 insertions(+), 47 deletions(-)
More information about TransferEntropy at CRAN
Permanent link
Title: ABC-SMC Inference of STEPCAM
Description: STEPwise Community Assembly Model collection, applying ABC-SMC in order to infer different community assembly processes. Also includes several plotting functions in order to visualize found estimates.
Author: Thijs Janzen & Fons van der Plas
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between STEPCAM versions 1.1.1 dated 2016-03-02 and 1.1.2 dated 2016-04-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/ABC_SMC.R | 23 +++++++++++++++-------- man/STEPCAM-package.Rd | 6 ++++-- 4 files changed, 26 insertions(+), 17 deletions(-)
Title: Calculate the NLTT Statistic
Description: Provides functions to calculate the normalised Lineage-Through-Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.
Author: Thijs Janzen
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between nLTT versions 1.1.1 dated 2015-12-07 and 1.2 dated 2016-04-26
DESCRIPTION | 8 ++--- MD5 | 11 ++++--- R/nLTTDiff.R | 71 ++++++++++++++++++++++++++++++++++++++++++++++++++ man/ABC_SMC_nLTT.Rd | 4 +- man/nLTT-internal.Rd | 4 ++ man/nLTT-package.Rd | 8 +++-- man/nLTTstat_exact.Rd |only 7 files changed, 91 insertions(+), 15 deletions(-)
Title: NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron
Similarity and Clustering
Description: Extends package 'nat' (NeuroAnatomy Toolbox) by providing a
collection of NBLAST-related functions.
Author: Greg Jefferis and James Manton
Maintainer: James Manton <ajd.manton@googlemail.com>
Diff between nat.nblast versions 1.5 dated 2014-09-19 and 1.6.2 dated 2016-04-26
DESCRIPTION | 14 +++--- MD5 | 71 ++++++++++++++++++---------------- NAMESPACE | 7 ++- NEWS | 5 ++ R/clustering.r | 18 ++++++-- R/neuriteblast.r | 67 ++++++++++++++++++++++++++++++-- R/scoremats.r | 31 ++++++++------ R/similarity.r | 1 README.md | 22 +++++++--- build |only inst |only man/NeuriteBlast.Rd | 3 - man/WeightedNNBasedLinesetMatching.Rd | 3 - man/calc_dists_dotprods.Rd | 3 - man/calc_prob_mat.Rd | 3 - man/calc_score_matrix.Rd | 3 - man/create_scoringmatrix.Rd | 3 - man/diagonal.Rd | 3 - man/extract-methods.Rd | 3 - man/fctraces20.Rd | 3 - man/fill_in_sparse_score_mat.Rd | 3 - man/fill_pairs_sparse_score_mat.Rd | 3 - man/nat.nblast-package.Rd | 3 - man/nblast.Rd | 69 +++++++++++++++++++++++++++++++-- man/nblast_allbyall.Rd | 3 - man/neuron_pairs.Rd | 3 - man/nhclust.Rd | 12 +++-- man/plot3d.hclust.Rd | 3 - man/show_similarity.Rd | 3 - man/smat.fcwb.Rd | 3 - man/sparse_score_mat.Rd | 3 - man/sub_dist_mat.Rd | 3 - man/sub_score_mat.Rd | 3 - man/subset.hclust.Rd | 3 - tests/test-all.R | 2 tests/testthat/test-scoremats.r | 33 +++++++++++++++ vignettes |only 37 files changed, 314 insertions(+), 101 deletions(-)
Title: Analyzes Clickstreams Based on Markov Chains
Description: A set of tools to read, analyze and write lists of click sequences
on websites (i.e., clickstream). A click can be represented by a number,
character or string. Clickstreams can be modeled as zero- (only computes
occurrence probabilities), first- or higher-order Markov chains.
Author: Michael Scholz
Maintainer: Michael Scholz <michael.scholz@uni-passau.de>
Diff between clickstream versions 1.1.7 dated 2016-03-21 and 1.1.8 dated 2016-04-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 7 ++++++- R/MarkovChain.r | 13 +++++++++---- R/clickstream-package.R | 2 +- man/clickstream-package.Rd | 2 +- 6 files changed, 26 insertions(+), 16 deletions(-)
Title: Advanced Analysis of B Cell Receptor Repertoire Data
Description: Methods for advanced analysis of B cell receptor repertoire
data, like gene usage, mutations, clones, diversity, distance measures and
multidimensional scaling and their visualisation.
Author: Julia Bischof
Maintainer: Julia Bischof <Julia.Bischof@uksh.de>
Diff between bcRep versions 1.3.3 dated 2016-04-15 and 1.3.4 dated 2016-04-26
DESCRIPTION | 8 +-- MD5 | 8 +-- R/clones.R | 120 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ inst/NEWS.Rmd | 8 +++ inst/doc/NEWS.pdf |binary 5 files changed, 136 insertions(+), 8 deletions(-)
Title: Discovering Multiple, Statistically-Equivalent Signatures
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.
Author: Ioannis Tsamardinos, Vincenzo Lagani, Giorgos Athineou, Michail Tsagris, Giorgos Borboudakis, Anna Roumpelaki
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 0.8 dated 2016-03-22 and 0.8.5 dated 2016-04-26
DESCRIPTION | 20 +-- MD5 | 113 ++++++++++++-------- NAMESPACE | 28 +++-- R/MMPC.R | 9 - R/SES.R | 50 ++++---- R/bic.fsreg.R |only R/bic.glm.fsreg.R |only R/cat.ci.R | 4 R/censIndCR.R | 2 R/condi.R | 19 ++- R/condi.perm.R |only R/cv.ses.R | 63 +++++++++-- R/dag2eg.R |only R/findAncestors.R |only R/findDescendants.R |only R/fs.reg.R |only R/glm.fsreg.R |only R/lm.fsreg.R |only R/mb.R |only R/mmhc.skel.R | 9 - R/mmmb.R |only R/model.R | 263 ++++++++++++++++++++++++++++++++++++++++------- R/nei.R | 53 ++++++--- R/pc.con.R | 61 +++++----- R/pc.or.R |only R/pc.skel.R | 120 +++++++++++++-------- R/permcor.R |only R/plota.R | 13 +- R/rdag.R |only R/reg.fit.R | 106 +++++++++++------- R/testIndBeta.R | 3 R/testIndFisher.R | 18 +-- R/testIndLogistic.R | 28 +++-- R/testIndPois.R | 22 ++- R/testIndRQ.R | 1 R/testIndReg.R | 42 ++++--- R/testIndSpearman.R | 10 - R/transitiveClosure.R |only R/undir.path.R |only man/MXM-internal.Rd | 3 man/MXM-package.Rd | 8 - man/SES.Rd | 27 ++-- man/bic.fsreg.Rd |only man/bic.glm.fsreg.Rd |only man/censIndCR.Rd | 5 man/cv.ses.Rd | 18 ++- man/dag2eg.Rd |only man/findAncestors.Rd |only man/findDescendants.Rd |only man/fs.reg.Rd |only man/gSquare.Rd | 2 man/glm.fsreg.Rd |only man/lm.fsreg.Rd |only man/mb.Rd |only man/mmhc.skel.Rd | 3 man/mmmb.Rd |only man/nei.Rd | 17 +-- man/pc.or.Rd |only man/pc.skel.Rd | 20 ++- man/permcor.Rd |only man/plota.Rd | 12 +- man/rdag.Rd |only man/reg.fit.Rd | 49 ++++---- man/testIndBeta.Rd | 2 man/testIndClogit.Rd | 2 man/testIndFisher.Rd | 12 +- man/testIndGLMM.Rd | 2 man/testIndLogistic.Rd | 6 - man/testIndPois.Rd | 8 - man/testIndReg.Rd | 11 + man/testIndSpeedglm.Rd | 4 man/transitiveClosure.Rd |only man/undir.path.Rd |only 73 files changed, 849 insertions(+), 419 deletions(-)
Title: Convert R Markdown Files to DataCamp Light HTML Files
Description: DataCamp Light (<https://github.com/datacamp/datacamp-light>) is a light-weight implementation of the DataCamp UI,
that allows you to embed interactive exercises inside HTML documents. The 'tutorial' package makes it easy to create these
HTML files from R Markdown files. A wrapper around the 'rmarkdown' package, 'tutorial' pre-detects code chunks with the 'ex' and 'type'
properties, and replaces the chunks with DataCamp Light readable chunks in the resulting HTML file.
Author: Filip Schouwenaars
Maintainer: Filip Schouwenaars <filip@datacamp.com>
Diff between tutorial versions 0.2.2 dated 2016-03-15 and 0.3.0 dated 2016-04-26
DESCRIPTION | 9 ++--- MD5 | 25 ++++++++------ NAMESPACE | 1 R/renderer.R | 40 ++++++++++++++-------- R/settings.R | 2 - R/utils-vignettes.R |only R/utils.R | 19 ++++++++++ R/zzz.R |only README.md | 66 ++++++++++++++++++++++++++++++++----- build |only inst/doc |only inst/example.Rmd | 19 +++++----- man/render.Rd | 7 +++ tests/testthat/test-parse-render.R | 58 ++++++++++++++++++++++++++++---- vignettes |only 15 files changed, 191 insertions(+), 55 deletions(-)
Title: Interface to the 'Open Tree of Life' API
Description: An interface to the 'Open Tree of Life' API to retrieve
phylogenetic trees, information about studies used to assemble the synthetic
tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The
'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all
named species.
Author: Francois Michonneau [aut, cre],
Joseph Brown [aut],
David Winter [aut]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between rotl versions 0.5.0 dated 2016-02-03 and 3.0.0 dated 2016-04-26
rotl-0.5.0/rotl/R/api-gol.R |only rotl-0.5.0/rotl/R/gol.R |only rotl-0.5.0/rotl/man/gol_about.Rd |only rotl-0.5.0/rotl/man/gol_node_info.Rd |only rotl-0.5.0/rotl/man/study_list.Rd |only rotl-0.5.0/rotl/man/taxonomy_lica.Rd |only rotl-0.5.0/rotl/man/taxonomy_taxon.Rd |only rotl-0.5.0/rotl/tests/testthat/test-api-gol.R |only rotl-0.5.0/rotl/tests/testthat/test-gol.R |only rotl-3.0.0/rotl/DESCRIPTION | 11 rotl-3.0.0/rotl/LICENSE | 4 rotl-3.0.0/rotl/MD5 | 124 +-- rotl-3.0.0/rotl/NAMESPACE | 74 +- rotl-3.0.0/rotl/NEWS.md | 57 + rotl-3.0.0/rotl/R/api-collections.R |only rotl-3.0.0/rotl/R/api-studies.R | 42 - rotl-3.0.0/rotl/R/api-taxonomy.R | 71 +- rotl-3.0.0/rotl/R/api-tnrs.R | 52 - rotl-3.0.0/rotl/R/api-tol.R | 132 ++- rotl-3.0.0/rotl/R/base.R | 119 ++- rotl-3.0.0/rotl/R/external_data.R |only rotl-3.0.0/rotl/R/match_names.R | 190 +++-- rotl-3.0.0/rotl/R/methods.R |only rotl-3.0.0/rotl/R/studies.R | 13 rotl-3.0.0/rotl/R/tax_utils.R |only rotl-3.0.0/rotl/R/taxonomy.R | 245 ++++--- rotl-3.0.0/rotl/R/tnrs.R | 114 +-- rotl-3.0.0/rotl/R/tol.R | 716 ++++++++++++++++----- rotl-3.0.0/rotl/README.md | 94 +- rotl-3.0.0/rotl/inst/doc/data_mashups.R | 16 rotl-3.0.0/rotl/inst/doc/data_mashups.Rmd | 74 +- rotl-3.0.0/rotl/inst/doc/data_mashups.html | 155 +++- rotl-3.0.0/rotl/inst/doc/how-to-use-rotl.R | 8 rotl-3.0.0/rotl/inst/doc/how-to-use-rotl.Rmd | 45 - rotl-3.0.0/rotl/inst/doc/how-to-use-rotl.html | 105 +-- rotl-3.0.0/rotl/inst/doc/meta-analysis.R | 19 rotl-3.0.0/rotl/inst/doc/meta-analysis.Rmd | 21 rotl-3.0.0/rotl/inst/doc/meta-analysis.html | 119 +-- rotl-3.0.0/rotl/inst/extdata/egg.csv |only rotl-3.0.0/rotl/man/match_names-methods.Rd | 19 rotl-3.0.0/rotl/man/source_list.Rd |only rotl-3.0.0/rotl/man/strip_ott_ids.Rd | 20 rotl-3.0.0/rotl/man/studies_properties.Rd | 10 rotl-3.0.0/rotl/man/study_external_IDs.Rd |only rotl-3.0.0/rotl/man/synonyms.match_names.Rd | 11 rotl-3.0.0/rotl/man/tax_lineage.Rd |only rotl-3.0.0/rotl/man/taxon_external_IDs.Rd |only rotl-3.0.0/rotl/man/taxonomy-methods.Rd | 29 rotl-3.0.0/rotl/man/taxonomy_about.Rd | 21 rotl-3.0.0/rotl/man/taxonomy_mrca.Rd |only rotl-3.0.0/rotl/man/taxonomy_subtree.Rd | 8 rotl-3.0.0/rotl/man/taxonomy_taxon_info.Rd |only rotl-3.0.0/rotl/man/tnrs_match_names.Rd | 19 rotl-3.0.0/rotl/man/tol_about.Rd | 107 ++- rotl-3.0.0/rotl/man/tol_induced_subtree.Rd | 36 - rotl-3.0.0/rotl/man/tol_mrca.Rd | 148 +++- rotl-3.0.0/rotl/man/tol_node_info.Rd |only rotl-3.0.0/rotl/man/tol_subtree.Rd | 35 - rotl-3.0.0/rotl/tests/testthat/test-API.R | 28 rotl-3.0.0/rotl/tests/testthat/test-api-studies.R | 11 rotl-3.0.0/rotl/tests/testthat/test-api-taxonomy.R | 44 - rotl-3.0.0/rotl/tests/testthat/test-api-tnrs.R | 21 rotl-3.0.0/rotl/tests/testthat/test-api-tol.R | 38 - rotl-3.0.0/rotl/tests/testthat/test-base.R | 6 rotl-3.0.0/rotl/tests/testthat/test-external.R |only rotl-3.0.0/rotl/tests/testthat/test-match_names.R | 120 ++- rotl-3.0.0/rotl/tests/testthat/test-studies.R | 6 rotl-3.0.0/rotl/tests/testthat/test-taxonomy.R | 240 ++++++- rotl-3.0.0/rotl/tests/testthat/test-tnrs.R | 3 rotl-3.0.0/rotl/tests/testthat/test-tol.R | 389 ++++++++++- rotl-3.0.0/rotl/tests/tree_of_life.json | 20 rotl-3.0.0/rotl/vignettes/data_mashups.Rmd | 74 +- rotl-3.0.0/rotl/vignettes/how-to-use-rotl.Rmd | 45 - rotl-3.0.0/rotl/vignettes/meta-analysis.Rmd | 21 74 files changed, 2975 insertions(+), 1174 deletions(-)
Title: Build Random Multiple Choice Exams
Description: Using as input a 'LaTeX' file with a multiple choice exam, this package will produce random versions of the same exam.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between RndTexExams versions 1.1.1 dated 2016-02-20 and 1.2 dated 2016-04-26
DESCRIPTION | 10 MD5 | 36 +- NAMESPACE | 17 - NEWS.md | 31 +- R/rte_Utils.R | 250 +++++++++------- R/rte_build_rdn_test.R | 565 ++++++++++++++++++------------------- R/rte_grade_exams.R |only build/vignette.rds |binary inst/doc/rte-vignette.R | 175 ++++++++--- inst/doc/rte-vignette.Rmd | 480 ++++++++++++++++++++----------- inst/doc/rte-vignette.html | 573 +++++++++++++++++++++++--------------- inst/extdata/MyRandomTest.tex | 4 man/rte.build.rdn.test.Rd | 157 +++++----- man/rte.compile.latex.Rd | 60 ++- man/rte.grade.exams.Rd |only tests/testthat/MyRandomTest_1.pdf |only tests/testthat/MyRandomTest_2.pdf |only tests/testthat/MyRandomTest_3.pdf |only tests/testthat/MyRandomTest_4.pdf |only tests/testthat/MyRandomTest_5.pdf |only tests/testthat/test_rte.R | 4 vignettes/Answer_Matrix_csv |only vignettes/rte-vignette.Rmd | 480 ++++++++++++++++++++----------- 23 files changed, 1677 insertions(+), 1165 deletions(-)
Title: Interface Between GRASS 7 Geographical Information System and R
Description: Interpreted interface between GRASS 7 geographical
information system and R, based on starting R from within the GRASS GIS
environment, or running free-standing R in a temporary GRASS location;
the package provides facilities for using all GRASS commands from the
R command line. This package may not be used for GRASS 6, for which
spgrass6 should be used.
Author: Roger Bivand [cre, aut],
Rainer Krug [ctb],
Markus Neteler [ctb],
Sebastian Jeworutzki [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgrass7 versions 0.1-6 dated 2016-04-11 and 0.1-7 dated 2016-04-26
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 1 + R/AAA.R | 6 ++++++ R/initGRASS.R | 18 +++++++++++++++++- R/vect_link.R | 10 +++++++--- man/initGRASS.Rd | 7 +++++-- 7 files changed, 46 insertions(+), 16 deletions(-)
Title: RDF Library Bindings in R
Description: Provides methods to parse, query and serialize information
stored in the Resource Description Framework (RDF). RDF is described at <http://www.w3.org/TR/rdf-primer>.
This package supports RDF by implementing an R interface to the Redland RDF C library,
described at <http://librdf.org/docs/api/index.html>. In brief, RDF provides a structured graph
consisting of Statements composed of Subject, Predicate, and Object Nodes.
Author: Matthew B. Jones [aut, cre],
Peter Slaughter [aut],
Jeroen Ooms [aut],
Carl Boettiger [aut],
Scott Chamberlain [aut],
David Beckett [cph],
University of Bristol [cph],
Regents of the University of California [cph]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Diff between redland versions 1.0.17-7 dated 2016-03-12 and 1.0.17-8 dated 2016-04-26
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 11 +++++++++++ README.md | 25 +++++++++++++++++++------ build/vignette.rds |binary configure | 4 ++-- src/Makevars.win | 14 ++++++++++---- 7 files changed, 52 insertions(+), 22 deletions(-)
Title: Build Regression Models Quickly and Display the Results Using
'ggplot2'
Description: A set of functions to extract results from regression models and
plot the effect size using 'ggplot2' seamlessly. While 'broom' is useful to
convert statistical analysis objects into tidy data frames, 'coefplot' is adept at showing
multivariate regression results. With specific outcome, this package could build regression models
automatically, extract results into a data frame and provide a quicker way to summarize
models' statistical findings using 'ggplot2'.
Author: Xikun Han [aut, cre]
Maintainer: Xikun Han <hanxikun2014@163.com>
Diff between quickReg versions 0.0.2 dated 2016-03-29 and 0.0.3 dated 2016-04-26
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS | 7 +++++++ R/data.R | 4 ---- R/dataframe.reg.R | 10 +++++++--- R/display.data.frame.R | 2 +- R/plot.reg.R | 7 ++++--- R/reg.R | 43 +++++++++++++++++++------------------------ build/vignette.rds |binary inst/doc/quickReg.R | 3 ++- inst/doc/quickReg.Rmd | 3 ++- inst/doc/quickReg.html | 31 ++++++++++++++++--------------- man/reg.Rd | 11 ++++++----- vignettes/quickReg.Rmd | 3 ++- 14 files changed, 82 insertions(+), 74 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: Network meta-analysis following methods by Rücker (2012) and Krahn et al. (2013). Functions and datasets to support Schwarzer, Carpenter, and Rücker, "Meta-Analysis with R" (2015), Chapter 8 "Network Meta-Analysis".
Author: Gerta Rücker [aut],
Guido Schwarzer [aut, cre],
Ulrike Krahn [aut],
Jochem König [aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between netmeta versions 0.8-0 dated 2015-06-26 and 0.9-0 dated 2016-04-26
netmeta-0.8-0/netmeta/R/nodedist.R |only netmeta-0.9-0/netmeta/DESCRIPTION | 12 netmeta-0.9-0/netmeta/MD5 | 58 +- netmeta-0.9-0/netmeta/NAMESPACE | 26 netmeta-0.9-0/netmeta/NEWS | 74 ++ netmeta-0.9-0/netmeta/R/multiarm.R | 43 - netmeta-0.9-0/netmeta/R/netconnection.R |only netmeta-0.9-0/netmeta/R/netdistance.R |only netmeta-0.9-0/netmeta/R/netgraph.R | 596 ++++++++++++--------- netmeta-0.9-0/netmeta/R/netmeta.R | 14 netmeta-0.9-0/netmeta/R/netrank.R | 1 netmeta-0.9-0/netmeta/R/nma.ruecker.R | 51 + netmeta-0.9-0/netmeta/R/pairwise.R | 231 +++++++- netmeta-0.9-0/netmeta/R/print.decomp.design.R | 8 netmeta-0.9-0/netmeta/R/print.netconnection.R |only netmeta-0.9-0/netmeta/R/print.netrank.R | 2 netmeta-0.9-0/netmeta/R/print.summary.netmeta.R | 15 netmeta-0.9-0/netmeta/R/stress.R | 166 +++-- netmeta-0.9-0/netmeta/data/Woods2010.csv.gz |only netmeta-0.9-0/netmeta/man/Senn2013.Rd | 24 netmeta-0.9-0/netmeta/man/Woods2010.Rd |only netmeta-0.9-0/netmeta/man/as.data.frame.netmeta.Rd | 7 netmeta-0.9-0/netmeta/man/decomp.design.Rd | 14 netmeta-0.9-0/netmeta/man/forest.netmeta.Rd | 13 netmeta-0.9-0/netmeta/man/netconnection.Rd |only netmeta-0.9-0/netmeta/man/netdistance.Rd |only netmeta-0.9-0/netmeta/man/netgraph.Rd | 200 +++---- netmeta-0.9-0/netmeta/man/netheat.Rd | 20 netmeta-0.9-0/netmeta/man/netmeasures.Rd | 36 - netmeta-0.9-0/netmeta/man/netmeta.Rd | 98 ++- netmeta-0.9-0/netmeta/man/netrank.Rd | 10 netmeta-0.9-0/netmeta/man/pairwise.Rd | 160 +++-- netmeta-0.9-0/netmeta/man/print.decomp.design.Rd | 1 netmeta-0.9-0/netmeta/man/print.netmeta.Rd | 13 34 files changed, 1239 insertions(+), 654 deletions(-)
Title: Multitaper Spectral Analysis Tools
Description: Implements multitaper spectral analysis using discrete prolate spheroidal sequences (Slepians) and sine tapers. It includes an adaptive weighted multitaper spectral estimate, a coherence estimate, Thomson's Harmonic F-test, and complex demodulation. The Slepians sequences are generated efficiently using a tridiagonal matrix solution, and jackknifed confidence intervals are available for most estimates.
Author: Karim Rahim <karim.rahim@queensu.ca>, Wesley S. Burr <wesley.burr@gmail.com>
Maintainer: Karim Rahim <karim.rahim@queensu.ca>
Diff between multitaper versions 1.0-11 dated 2015-02-25 and 1.0-12 dated 2016-04-26
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 7 +++++++ 3 files changed, 13 insertions(+), 6 deletions(-)
Title: Masked User Input
Description: A micro-package for reading "passwords", i.e. reading
user input with masking, so that the input is not displayed as it
is typed. Currently we have support for 'RStudio', the command line
(every OS), and any platform where 'tcltk' is present.
Author: Drew Schmidt [aut, cre],
Wei-Chen Chen [aut],
Gabor Csardi [ctb] (Improved terminal detection)
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between getPass versions 0.1-0 dated 2016-02-25 and 0.1-1 dated 2016-04-26
ChangeLog | 7 +++++- DESCRIPTION | 9 ++++---- MD5 | 23 ++++++++++++++------ R/getPass-package.r | 8 ++++--- R/getPass.r | 52 ++++++++++++++++++++++++---------------------- README.md | 55 ++++++------------------------------------------- build |only inst |only man/getPass-package.Rd | 8 ++++--- man/getPass.Rd | 7 ++++-- vignettes |only 11 files changed, 76 insertions(+), 93 deletions(-)
Title: Observed-Score Linking and Equating
Description: Contains methods for observed-score linking
and equating under the single-group, equivalent-groups,
and nonequivalent-groups with anchor test(s) designs.
Equating types include identity, mean, linear, general
linear, equipercentile, circle-arc, and composites of
these. Equating methods include synthetic, nominal
weights, Tucker, Levine observed score, Levine true
score, Braun/Holland, frequency estimation, and chained
equating. Plotting and summary methods, and methods for
multivariate presmoothing and bootstrap error estimation
are also provided.
Author: Anthony Albano <tony.d.albano@gmail.com>
Maintainer: Anthony Albano <tony.d.albano@gmail.com>
Diff between equate versions 2.0-3 dated 2014-10-21 and 2.0-4 dated 2016-04-26
equate-2.0-3/equate/LICENSE |only equate-2.0-3/equate/R/error.R |only equate-2.0-3/equate/data/ACTmath.rdata |only equate-2.0-3/equate/data/KBneat.rdata |only equate-2.0-3/equate/data/PISA.rdata |only equate-2.0-3/equate/man/descriptives.Rd |only equate-2.0-3/equate/man/error.Rd |only equate-2.0-3/equate/man/percentiles.Rd |only equate-2.0-4/equate/DESCRIPTION | 35 - equate-2.0-4/equate/MD5 | 80 +- equate-2.0-4/equate/NAMESPACE | 177 ++--- equate-2.0-4/equate/NEWS | 213 +++--- equate-2.0-4/equate/R/ACTmath.R |only equate-2.0-4/equate/R/KBneat.R |only equate-2.0-4/equate/R/PISA.R |only equate-2.0-4/equate/R/bootstrap.R |only equate-2.0-4/equate/R/circlearc.R | 22 equate-2.0-4/equate/R/composite.R | 108 ++- equate-2.0-4/equate/R/descriptives.R |only equate-2.0-4/equate/R/equate-package.R |only equate-2.0-4/equate/R/equate.R | 739 +++++++++++++---------- equate-2.0-4/equate/R/equipercentile.R | 39 - equate-2.0-4/equate/R/freqtab.R | 728 ++++++---------------- equate-2.0-4/equate/R/linear.R | 97 +-- equate-2.0-4/equate/R/plot.bootstrap.R |only equate-2.0-4/equate/R/plot.equate.R |only equate-2.0-4/equate/R/plot.freqtab.R |only equate-2.0-4/equate/R/px.R |only equate-2.0-4/equate/R/smoothing.R | 468 ++++++++++---- equate-2.0-4/equate/R/synthetic.R | 4 equate-2.0-4/equate/build/vignette.rds |binary equate-2.0-4/equate/data/ACTmath.rda |only equate-2.0-4/equate/data/KBneat.rda |only equate-2.0-4/equate/data/PISA.rda |only equate-2.0-4/equate/inst/doc/equatevignette.R | 103 +-- equate-2.0-4/equate/inst/doc/equatevignette.Rnw | 103 +-- equate-2.0-4/equate/inst/doc/equatevignette.pdf |binary equate-2.0-4/equate/man/ACTmath.Rd | 44 - equate-2.0-4/equate/man/KBneat.Rd | 48 - equate-2.0-4/equate/man/PISA.Rd | 139 ++-- equate-2.0-4/equate/man/bootstrap.Rd |only equate-2.0-4/equate/man/composite.Rd | 154 ++-- equate-2.0-4/equate/man/equate-package.Rd | 91 +- equate-2.0-4/equate/man/equate.Rd | 481 +++++++++----- equate-2.0-4/equate/man/freqtab.Rd | 227 ++++--- equate-2.0-4/equate/man/plot.bootstrap.Rd | 128 ++- equate-2.0-4/equate/man/plot.equate.Rd | 154 ++-- equate-2.0-4/equate/man/plot.freqtab.Rd | 146 ++-- equate-2.0-4/equate/man/presmoothing.Rd | 295 ++++++--- equate-2.0-4/equate/man/px.Rd |only equate-2.0-4/equate/man/summary.freqtab.Rd |only equate-2.0-4/equate/vignettes/equatebibfile.bib | 367 ++++++----- equate-2.0-4/equate/vignettes/equatevignette.Rnw | 103 +-- 53 files changed, 2907 insertions(+), 2386 deletions(-)
Title: Quantitative Support of Decision Making under Uncertainty
Description: Supporting the quantitative analysis of binary welfare based
decision making processes using Monte Carlo simulations. Decision support
is given on two levels: (i) The actual decision level is to choose between
two alternatives under probabilistic uncertainty. This package calculates
the optimal decision based on maximizing expected welfare. (ii) The meta
decision level is to allocate resources to reduce the uncertainty in the
underlying decision problem, i.e to increase the current information to
improve the actual decision making process. This problem is dealt with
using the Value of Information Analysis. The Expected Value of
Information for arbitrary prospective estimates can be calculated as
well as Individual Expected Value of Perfect Information.
The probabilistic calculations are done via Monte Carlo
simulations. This Monte Carlo functionality can be used on its own.
Author: Eike Luedeling [cre, aut] (ICRAF),
Lutz Göhring [aut] (ICRAF and Lutz Göhring Consulting)
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between decisionSupport versions 1.101.1 dated 2015-05-19 and 1.101.2 dated 2016-04-26
DESCRIPTION | 32 MD5 | 150 +- NAMESPACE | 121 +- R/decisionSupport-package.R | 252 ++-- R/decisionSupport.R | 431 +++---- R/estimate.R | 1440 ++++++++++++------------- R/estimate1d.R | 763 ++++++------- R/estimate_read_csv_old.R | 260 ++-- R/eviSimulation.R | 827 +++++++------- R/individualEvpiSimulation.R | 252 ++-- R/mcSimulation.R | 1049 +++++++++--------- R/paramtnormci_fit.R | 418 +++---- R/paramtnormci_numeric.R | 344 ++--- R/plainNames2data.frameNames.R | 230 +-- R/plsr.mcSimulation.R | 170 +- R/random.R | 506 ++++---- R/rdist90ci_exact.R | 340 ++--- R/rdistq_fit.R | 502 ++++---- R/rmvnorm90ci_exact.R | 148 +- R/rtnorm90ci.R | 286 ++-- R/welfareDecisionAnalysis.R | 743 ++++++------ inst/extdata/profit-4.csv | 8 inst/extdata/profit-4_cor.csv | 7 man/as.data.frame.mcSimulation.Rd | 62 - man/corMat-set.Rd | 34 man/corMat.Rd | 30 man/decisionSupport-package.Rd | 216 +-- man/decisionSupport.Rd | 162 +- man/estimate.Rd | 369 +++--- man/estimate1d.Rd | 162 +- man/estimate_read_csv.Rd | 208 +-- man/estimate_write_csv.Rd | 76 - man/eviSimulation.Rd | 463 ++++---- man/hist.eviSimulation.Rd | 126 +- man/hist.mcSimulation.Rd | 134 +- man/hist.welfareDecisionAnalysis.Rd | 134 +- man/individualEvpiSimulation.Rd | 200 +-- man/mcSimulation.Rd | 381 +++--- man/paramtnormci_fit.Rd | 152 +- man/paramtnormci_numeric.Rd | 92 - man/plainNames2data.frameNames.Rd | 116 +- man/plsr.mcSimulation.Rd | 98 - man/print.mcSimulation.Rd | 40 man/print.summary.eviSimulation.Rd | 44 man/print.summary.mcSimulation.Rd | 42 man/print.summary.welfareDecisionAnalysis.Rd | 44 man/random.Rd | 370 +++--- man/random.estimate.Rd | 139 +- man/random.estimate1d.Rd | 199 +-- man/rdist90ci_exact.Rd | 182 +-- man/rdistq_fit.Rd | 182 +-- man/rmvnorm90ci_exact.Rd | 54 man/row.names.estimate.Rd | 116 +- man/rtnorm90ci.Rd | 152 +- man/sort.summary.eviSimulation.Rd | 58 - man/summary.eviSimulation.Rd | 68 - man/summary.mcSimulation.Rd | 102 - man/summary.welfareDecisionAnalysis.Rd | 69 - man/welfareDecisionAnalysis.Rd | 420 +++---- tests/testthat.R | 60 - tests/testthat/profit-1.csv | 4 tests/testthat/profit-2.csv | 4 tests/testthat/profit-2_cor.csv | 5 tests/testthat/profit-3.csv | 4 tests/testthat/profit-4.csv | 8 tests/testthat/profit-4_cor.csv | 7 tests/testthat/test_estimate1d.R | 126 +- tests/testthat/test_estimate_read_csv.R | 148 +- tests/testthat/test_individualEvpiSimulation.R | 400 +++--- tests/testthat/test_mcSimulaton.R | 744 ++++++------ tests/testthat/test_random.estimate.R | 110 - tests/testthat/test_rdist90ci_exact.R | 318 ++--- tests/testthat/test_rdistq_fit.R | 276 ++-- tests/testthat/test_rmvnorm90ci_exact.R | 340 ++--- tests/testthat/test_rtnorm90ci.R | 322 ++--- tests/testthat/test_welfareDecisionAnalysis.R | 352 +++--- 76 files changed, 9029 insertions(+), 8974 deletions(-)
More information about decisionSupport at CRAN
Permanent link
Title: Nonlinear Regression Parameters Estimation by 'CRS4HC' and
'CRS4HCe'
Description: Functions for nonlinear regression parameters estimation by algorithms based on Controlled Random Search algorithm.
Both functions (crs4hc(), crs4hce()) adapt current search strategy by four heuristics competition. In addition, crs4hce() improves adaptability by adaptive stopping condition.
Author: Josef TvrdÃk [aut],
Tomáš Goryl [trl, cre]
Maintainer: Tomáš Goryl <tomas.goryl@gmail.com>
Diff between crsnls versions 0.1 dated 2016-04-10 and 0.2 dated 2016-04-26
DESCRIPTION | 8 MD5 | 8 R/code.R | 834 ++++++++++++++++++++++++++++++--------------------------- man/crs4hc.Rd | 12 man/crs4hce.Rd | 14 5 files changed, 466 insertions(+), 410 deletions(-)