Title: Cleaning and Visualizing Implicit Association Test (IAT) Data
Description: Implements the standard D-Scoring algorithm
(Greenwald, Banaji, & Nosek, 2003) for Implicit Association Test (IAT)
data and includes plotting capabilities for exploring raw IAT data.
Author: Dan Martin <dpmartin42@gmail.com>
Maintainer: Dan Martin <dpmartin42@gmail.com>
Diff between IAT versions 0.2 dated 2014-07-12 and 0.3 dated 2016-04-29
IAT-0.2/IAT/R/cleanIATExample.R |only IAT-0.3/IAT/DESCRIPTION | 18 +- IAT-0.3/IAT/MD5 | 28 +-- IAT-0.3/IAT/NAMESPACE | 7 IAT-0.3/IAT/R/IAT.R |only IAT-0.3/IAT/R/cleanIAT.R | 329 ++++++++++++++++++++-------------------- IAT-0.3/IAT/R/plotIIV.R | 57 +++--- IAT-0.3/IAT/R/plotIndVar.R | 66 ++++---- IAT-0.3/IAT/R/plotItemErr.R | 53 ++---- IAT-0.3/IAT/R/plotItemVar.R | 59 +++---- IAT-0.3/IAT/man/IATData.Rd | 7 IAT-0.3/IAT/man/cleanIAT.Rd | 77 ++++----- IAT-0.3/IAT/man/plotIIV.Rd | 23 +- IAT-0.3/IAT/man/plotIndVar.Rd | 22 +- IAT-0.3/IAT/man/plotItemErr.Rd | 25 +-- IAT-0.3/IAT/man/plotItemVar.Rd | 26 +-- 16 files changed, 401 insertions(+), 396 deletions(-)
Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: D.E. Beaudette and J. Skovlin, and S. Roecker
Maintainer: D.E. Beaudette <dylan.beaudette@ca.usda.gov>
Diff between soilDB versions 1.7 dated 2016-02-16 and 1.8 dated 2016-04-29
soilDB-1.7/soilDB/TODO |only soilDB-1.7/soilDB/man/get_extended_data_from_NASIS_db.Rd |only soilDB-1.8/soilDB/.Rinstignore |only soilDB-1.8/soilDB/DESCRIPTION | 15 soilDB-1.8/soilDB/MD5 | 50 +-- soilDB-1.8/soilDB/NAMESPACE | 6 soilDB-1.8/soilDB/NEWS | 13 soilDB-1.8/soilDB/R/fetchHenry.R | 49 +-- soilDB-1.8/soilDB/R/fetchKSSL.R | 24 + soilDB-1.8/soilDB/R/fetchNASIS.R | 50 ++- soilDB-1.8/soilDB/R/fetchSCAN.R | 2 soilDB-1.8/soilDB/R/get_colors_from_NASIS_db.R | 77 ----- soilDB-1.8/soilDB/R/get_extended_data_from_NASIS_db.R | 229 ++++++++------- soilDB-1.8/soilDB/R/get_hz_data_from_NASIS_db.R | 8 soilDB-1.8/soilDB/R/get_site_data_from_NASIS_db.R | 40 ++ soilDB-1.8/soilDB/R/mix_and_clean_colors.R | 61 ++- soilDB-1.8/soilDB/R/nasis_component_data.R | 91 ++--- soilDB-1.8/soilDB/R/simplfyFragmentData.R |only soilDB-1.8/soilDB/R/simplifyColorData.R |only soilDB-1.8/soilDB/R/utils.R | 25 + soilDB-1.8/soilDB/data/andic.subset.rda |binary soilDB-1.8/soilDB/data/cisne.rda |binary soilDB-1.8/soilDB/data/gSSURGO.chunk.rda |binary soilDB-1.8/soilDB/data/gopheridge.rda |binary soilDB-1.8/soilDB/data/loafercreek.rda |binary soilDB-1.8/soilDB/man/fetchHenry.Rd | 4 soilDB-1.8/soilDB/man/fetchKSSL.Rd | 61 +++ soilDB-1.8/soilDB/man/fetchNASIS.Rd | 6 soilDB-1.8/soilDB/man/fetchOSD.Rd | 3 29 files changed, 465 insertions(+), 349 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. Designed to be a generic framework like SimPy or
SimJulia, it leverages the use of Rcpp to boost the performance and turning
DES in R feasible. As a noteworthy characteristic, simmer exploits the
concept of trajectory: a common path in the simulation model for entities
of the same type.
Author: Bart Smeets [aut],
Iñaki Ucar [aut, cre]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer versions 3.2.0 dated 2016-04-04 and 3.2.1 dated 2016-04-29
simmer-3.2.0/simmer/inst/doc/introduction.R |only simmer-3.2.0/simmer/inst/doc/introduction.Rmd |only simmer-3.2.0/simmer/inst/doc/introduction.html |only simmer-3.2.0/simmer/inst/doc/terminology.R |only simmer-3.2.0/simmer/inst/doc/terminology.Rmd |only simmer-3.2.0/simmer/inst/doc/terminology.html |only simmer-3.2.0/simmer/inst/doc/trajectories.R |only simmer-3.2.0/simmer/inst/doc/trajectories.Rmd |only simmer-3.2.0/simmer/inst/doc/trajectories.html |only simmer-3.2.0/simmer/src/entity.cpp |only simmer-3.2.0/simmer/vignettes/introduction.Rmd |only simmer-3.2.0/simmer/vignettes/terminology.Rmd |only simmer-3.2.0/simmer/vignettes/trajectories.Rmd |only simmer-3.2.1/simmer/DESCRIPTION | 15 simmer-3.2.1/simmer/MD5 | 166 ++- simmer-3.2.1/simmer/NAMESPACE | 1 simmer-3.2.1/simmer/NEWS.md |only simmer-3.2.1/simmer/R/RcppExports.R | 20 simmer-3.2.1/simmer/R/activity.R | 6 simmer-3.2.1/simmer/R/convenience_funcs.R | 87 ++ simmer-3.2.1/simmer/R/plot.R | 21 simmer-3.2.1/simmer/R/simulator.R | 146 ++- simmer-3.2.1/simmer/R/trajectory.R | 31 simmer-3.2.1/simmer/R/utils.R | 4 simmer-3.2.1/simmer/R/wrap.R | 40 simmer-3.2.1/simmer/TODO | 6 simmer-3.2.1/simmer/build/vignette.rds |binary simmer-3.2.1/simmer/demo |only simmer-3.2.1/simmer/inst/doc/A-introduction.R |only simmer-3.2.1/simmer/inst/doc/A-introduction.Rmd |only simmer-3.2.1/simmer/inst/doc/A-introduction.html |only simmer-3.2.1/simmer/inst/doc/B-terminology.R |only simmer-3.2.1/simmer/inst/doc/B-terminology.Rmd |only simmer-3.2.1/simmer/inst/doc/B-terminology.html |only simmer-3.2.1/simmer/inst/doc/C-trajectories.R |only simmer-3.2.1/simmer/inst/doc/C-trajectories.Rmd |only simmer-3.2.1/simmer/inst/doc/C-trajectories.html |only simmer-3.2.1/simmer/inst/doc/D-queueing-systems.R |only simmer-3.2.1/simmer/inst/doc/D-queueing-systems.Rmd |only simmer-3.2.1/simmer/inst/doc/D-queueing-systems.html |only simmer-3.2.1/simmer/inst/doc/E-ctmc.R |only simmer-3.2.1/simmer/inst/doc/E-ctmc.Rmd |only simmer-3.2.1/simmer/inst/doc/E-ctmc.html |only simmer-3.2.1/simmer/man/add_generator.Rd | 3 simmer-3.2.1/simmer/man/add_resource.Rd | 3 simmer-3.2.1/simmer/man/branch.Rd | 2 simmer-3.2.1/simmer/man/create_trajectory.Rd | 2 simmer-3.2.1/simmer/man/get_capacity.Rd | 2 simmer-3.2.1/simmer/man/get_head.Rd | 2 simmer-3.2.1/simmer/man/get_mon_arrivals.Rd | 2 simmer-3.2.1/simmer/man/get_mon_attributes.Rd | 2 simmer-3.2.1/simmer/man/get_mon_resources.Rd | 6 simmer-3.2.1/simmer/man/get_n_activities.Rd | 2 simmer-3.2.1/simmer/man/get_n_generated.Rd | 2 simmer-3.2.1/simmer/man/get_next_activity.Rd | 2 simmer-3.2.1/simmer/man/get_prev_activity.Rd | 2 simmer-3.2.1/simmer/man/get_queue_count.Rd | 2 simmer-3.2.1/simmer/man/get_queue_size.Rd | 2 simmer-3.2.1/simmer/man/get_server_count.Rd | 2 simmer-3.2.1/simmer/man/get_tail.Rd | 2 simmer-3.2.1/simmer/man/now.Rd | 2 simmer-3.2.1/simmer/man/onestep.Rd | 2 simmer-3.2.1/simmer/man/peek.Rd | 14 simmer-3.2.1/simmer/man/print_activity.Rd | 2 simmer-3.2.1/simmer/man/release.Rd | 2 simmer-3.2.1/simmer/man/reset.Rd | 2 simmer-3.2.1/simmer/man/rollback.Rd | 5 simmer-3.2.1/simmer/man/run.Rd | 2 simmer-3.2.1/simmer/man/schedule.Rd |only simmer-3.2.1/simmer/man/seize.Rd | 2 simmer-3.2.1/simmer/man/set_attribute.Rd | 2 simmer-3.2.1/simmer/man/simmer.Rd | 2 simmer-3.2.1/simmer/man/timeout.Rd | 2 simmer-3.2.1/simmer/man/wrap.Rd | 2 simmer-3.2.1/simmer/src/RcppExports.cpp | 57 + simmer-3.2.1/simmer/src/activity.cpp | 16 simmer-3.2.1/simmer/src/activity.h | 44 - simmer-3.2.1/simmer/src/entity.h | 430 ---------- simmer-3.2.1/simmer/src/process.cpp |only simmer-3.2.1/simmer/src/process.h |only simmer-3.2.1/simmer/src/resource.cpp |only simmer-3.2.1/simmer/src/resource.h |only simmer-3.2.1/simmer/src/simmer.h | 19 simmer-3.2.1/simmer/src/simmer_rcpp.cpp | 65 + simmer-3.2.1/simmer/src/simulator.h | 120 +- simmer-3.2.1/simmer/src/stats.h | 5 simmer-3.2.1/simmer/tests/testthat/test-chaining.R | 8 simmer-3.2.1/simmer/tests/testthat/test-convenience-funcs.R | 27 simmer-3.2.1/simmer/tests/testthat/test-plot.R | 4 simmer-3.2.1/simmer/tests/testthat/test-simmer-resource-schedule.R |only simmer-3.2.1/simmer/tests/testthat/test-simmer.R | 47 - simmer-3.2.1/simmer/tests/testthat/test-simulation-1.R | 2 simmer-3.2.1/simmer/tests/testthat/test-trajectory-branch.R | 2 simmer-3.2.1/simmer/tests/testthat/test-trajectory-rollback.R | 21 simmer-3.2.1/simmer/tests/testthat/test-trajectory.R | 6 simmer-3.2.1/simmer/tests/testthat/test-wrap.R | 2 simmer-3.2.1/simmer/vignettes/A-introduction.Rmd |only simmer-3.2.1/simmer/vignettes/B-terminology.Rmd |only simmer-3.2.1/simmer/vignettes/C-trajectories.Rmd |only simmer-3.2.1/simmer/vignettes/D-queueing-systems.Rmd |only simmer-3.2.1/simmer/vignettes/E-ctmc.Rmd |only simmer-3.2.1/simmer/vignettes/includes |only 102 files changed, 746 insertions(+), 753 deletions(-)
Title: Quantile Regression Forests
Description: Quantile Regression Forests is a tree-based ensemble
method for estimation of conditional quantiles. It is
particularly well suited for high-dimensional data. Predictor
variables of mixed classes can be handled. The package is
dependent on the package randomForests, written by Andy Liaw.
Author: Nicolai Meinshausen
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Diff between quantregForest versions 1.2 dated 2016-03-22 and 1.3 dated 2016-04-29
quantregForest-1.2/quantregForest/R/getnodes.R |only quantregForest-1.2/quantregForest/R/importance.quantregForest.R |only quantregForest-1.2/quantregForest/R/loss.R |only quantregForest-1.2/quantregForest/R/myorder.R |only quantregForest-1.2/quantregForest/R/plot.all.R |only quantregForest-1.2/quantregForest/R/plot.fast.R |only quantregForest-1.2/quantregForest/R/plot.quantregForest.R |only quantregForest-1.2/quantregForest/R/predict.all.R |only quantregForest-1.2/quantregForest/R/predict.fast.R |only quantregForest-1.2/quantregForest/R/predict.imp.R |only quantregForest-1.2/quantregForest/R/varImpPlot.qrf.R |only quantregForest-1.2/quantregForest/build |only quantregForest-1.2/quantregForest/inst |only quantregForest-1.2/quantregForest/man/importance.quantregForest.rd |only quantregForest-1.2/quantregForest/man/plot.quantregForest.rd |only quantregForest-1.2/quantregForest/man/varImpPlot.qrf.rd |only quantregForest-1.2/quantregForest/src |only quantregForest-1.2/quantregForest/vignettes |only quantregForest-1.3/quantregForest/DESCRIPTION | 12 quantregForest-1.3/quantregForest/MD5 | 40 - quantregForest-1.3/quantregForest/NAMESPACE | 8 quantregForest-1.3/quantregForest/R/convert.R |only quantregForest-1.3/quantregForest/R/predict.quantregForest.R | 46 +- quantregForest-1.3/quantregForest/R/print.quantregForest.R | 2 quantregForest-1.3/quantregForest/R/quantregForest.R | 44 -- quantregForest-1.3/quantregForest/man/predict.quantregForest.Rd | 192 +++++---- quantregForest-1.3/quantregForest/man/quantregForest.Rd | 202 +++++----- 27 files changed, 286 insertions(+), 260 deletions(-)
More information about quantregForest at CRAN
Permanent link
Title: IRT Models for Polytomous and Continuous Item Responses
Description: Estimates the multidimensional polytomous Rasch model
(Rasch, 1961) and the Continuous Rating Scale model (Mueller, 1987).
Author: Christine Hohensinn
Maintainer: Christine Hohensinn <christine.hohensinn@univie.ac.at>
Diff between pcIRT versions 0.2 dated 2015-07-17 and 0.2.2 dated 2016-04-29
DESCRIPTION | 12 +- MD5 | 44 +++---- NAMESPACE | 2 R/MPRM.R | 284 ++++++++++++++++++++++++++------------------------- R/iccplot.CRSM.R | 48 ++++++-- R/iccplot.DRM.R | 14 ++ R/iccplot.MPRM.R | 29 ++++- R/iccplot.R | 12 +- R/person_par.MPRM.R | 4 man/crsm.Rd | 2 man/dLR.Rd | 2 man/drm.Rd | 2 man/extraversion.Rd | 2 man/gmc.Rd | 2 man/iccplot.Rd | 17 +-- man/lrt.Rd | 2 man/mprm.Rd | 2 man/pcIRT-package.Rd | 2 man/perspar.Rd | 2 man/reason.test.Rd | 2 man/simCRSM.Rd | 2 man/simMPRM.Rd | 2 man/wt.Rd | 2 23 files changed, 288 insertions(+), 204 deletions(-)
Title: Flights that Departed NYC in 2013
Description: Airline on-time data for all flights departing NYC in 2013.
Also includes useful 'metadata' on airlines, airports, weather, and planes.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between nycflights13 versions 0.1 dated 2014-07-22 and 0.2.0 dated 2016-04-29
DESCRIPTION | 24 +++++++++++++++--------- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 2 +- NEWS.md |only R/flights.R | 7 +++++-- R/weather.R | 1 + README.md | 3 ++- data/airlines.rda |binary data/airports.rda |binary data/flights.rda |binary data/weather.rda |binary man/airlines.Rd | 5 +++-- man/airports.Rd | 3 ++- man/flights.Rd | 10 +++++++--- man/planes.Rd | 3 ++- man/weather.Rd | 4 +++- 16 files changed, 56 insertions(+), 35 deletions(-)
Title: Nonparametric Estimation of Regression Models with
Factor-by-Curve Interactions
Description: A method for obtain nonparametric estimates of regression models
with or without factor-by-curve interactions using local polynomial kernel
smoothers or splines. Additionally, a parametric model (allometric model) can be
estimated.
Author: Marta Sestelo [aut, cre],
Nora M. Villanueva [aut],
Javier Roca-Pardinas [aut]
Maintainer: Marta Sestelo <sestelo@uvigo.es>
Diff between npregfast versions 1.2.1 dated 2016-02-16 and 1.3.0 dated 2016-04-29
DESCRIPTION | 17 - LICENSE | 2 MD5 | 47 +- NAMESPACE | 14 NEWS | 8 R/children.R |only R/frfast.R | 683 +++++++++++++++++++++++++++++++----------- R/globaltest.R | 291 ++++++++++++++--- R/interpret.frfastformula.R | 4 R/localtest.R | 299 ++++++++++++++---- R/npregfast-package.R | 9 R/plot.frfast.R | 2 R/predict.frfast.R | 154 ++++++++- R/print.frfast.R | 17 + R/runExample.R | 2 R/summary.frfast.R | 24 + README.md | 2 data/children.rda |only inst/shiny_examples/demo/ui.R | 8 man/children.Rd |only man/frfast.Rd | 61 +++ man/globaltest.Rd | 41 ++ man/localtest.Rd | 42 ++ man/npregfast.Rd | 9 man/predict.frfast.Rd | 2 man/summary.frfast.Rd | 1 26 files changed, 1364 insertions(+), 375 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with
this package. Among other things, it is possible to create and manipulate multivariate network
data with different formats, and there are effective ways available to treat multiple networks
with routines that combine algebraic systems like the partially ordered semigroup or the
semiring structure together with the relational bundles occurring in different types of
multivariate network data sets. As well an algebraic approach for two-mode networks is made
through Galois derivations between families of the pair of subsets.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 1.8.2 dated 2016-03-08 and 1.9 dated 2016-04-29
DESCRIPTION | 8 +- MD5 | 24 +++--- R/bundles.R | 35 ++++----- R/comps.R |only R/dichot.R | 29 +++++++ R/read.srt.R | 3 R/rel.sys.R | 177 ++++++++++++++++++++++++++++++++--------------- R/semigroup.R | 25 ++---- R/signed.R | 7 - inst/CHANGELOG | 23 +++++- man/comps.Rd |only man/dichot.Rd | 7 + man/multiplex-package.Rd | 4 - man/rel.sys.Rd | 12 ++- 14 files changed, 236 insertions(+), 118 deletions(-)
Title: Collect Data Programmatically by POST Methods to Google Forms
Description: GET and POST data to Google Forms; an API to Google Forms,
allowing users to POST data securely to Google Forms without needing authentication or permissioning.
Author: Steve Simpson [aut, cre]
Maintainer: Steve Simpson <steven.troy.simpson@gmail.com>
Diff between googleformr versions 0.0.2 dated 2016-03-26 and 0.0.3 dated 2016-04-29
googleformr-0.0.2/googleformr/R/why_R_u_opensource.R |only googleformr-0.0.2/googleformr/man/why_R_u_opensource.Rd |only googleformr-0.0.3/googleformr/DESCRIPTION | 15 +-- googleformr-0.0.3/googleformr/MD5 | 28 +++-- googleformr-0.0.3/googleformr/NAMESPACE | 4 googleformr-0.0.3/googleformr/R/check_form_works.R |only googleformr-0.0.3/googleformr/R/comments_gformr.R |only googleformr-0.0.3/googleformr/R/get_form.R | 8 - googleformr-0.0.3/googleformr/R/get_form_entry_ids.R | 9 - googleformr-0.0.3/googleformr/R/get_form_id.R | 5 - googleformr-0.0.3/googleformr/R/get_form_questions.R | 17 +-- googleformr-0.0.3/googleformr/R/gformr.R | 36 +++---- googleformr-0.0.3/googleformr/R/make_url.R | 13 +- googleformr-0.0.3/googleformr/README.md | 79 ++++++++++------ googleformr-0.0.3/googleformr/man/check_form_works.Rd |only googleformr-0.0.3/googleformr/man/comments_gformr.Rd |only googleformr-0.0.3/googleformr/man/gformr.Rd | 9 + googleformr-0.0.3/googleformr/man/make_url.Rd | 4 18 files changed, 126 insertions(+), 101 deletions(-)
Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetTDData versions 1.1 dated 2016-04-13 and 1.2 dated 2016-04-29
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------ NAMESPACE | 8 ++-- NEWS.md | 8 +++- R/gtdd_read_TD_files.R | 31 ++++++++++++----- build/vignette.rds |binary inst/doc/gtdd-vignette.R | 11 ++++-- inst/doc/gtdd-vignette.Rmd | 19 ++++++---- inst/doc/gtdd-vignette.html | 31 ++++++++++------- man/download.TD.data.Rd | 80 ++++++++++++++++++++++---------------------- man/read.TD.files.Rd | 78 +++++++++++++++++++++--------------------- vignettes/gtdd-vignette.Rmd | 19 ++++++---- 12 files changed, 177 insertions(+), 138 deletions(-)
Title: A Fast Solver for Parameterized LP Problems, Constrained L1
Minimization Approach to Sparse Precision Matrix Estimation and
Dantzig Selector
Description: Provides a method of recovering the precision matrix efficiently
and solving for the dantzig selector by applying the parametric
simplex method. The computation is based on a linear optimization
solver. It also contains a generic LP solver and a parameterized LP
solver using parametric simplex method.
Author: Haotian Pang, Di Qi, Han Liu and Robert Vanderbei
Maintainer: Haotian Pang <hpang@princeton.edu>
Diff between fastclime versions 1.4 dated 2016-04-18 and 1.4.1 dated 2016-04-29
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/dantzig.R | 8 ++++---- R/dantzig.generator.R | 6 +++--- R/dantzig.selector.R | 18 ++++++++++++------ R/fastclime.R | 12 +++++++----- R/fastclime.generator.R | 7 ++++--- R/fastclime.plot.R | 4 ++-- R/fastclime.selector.R | 9 ++++----- R/fastlp.R | 4 ++-- R/paralp.R | 4 ++-- man/dantzig.selector.Rd | 2 +- man/fastclime-package.Rd | 4 ++-- 13 files changed, 60 insertions(+), 52 deletions(-)
Title: Simple Variable Treatment
Description: Prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: Inf, NA, too many categorical values, rare categorical values, new
categorical values (levels seen during application, but not during training).
'vtreat::prepare' should be used as you would use 'model.matrix'.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 0.5.22 dated 2016-01-07 and 0.5.23 dated 2016-04-29
DESCRIPTION | 17 + MD5 | 84 +++++--- NAMESPACE | 3 R/outOfSample.R | 111 ++++++++--- R/utils.R | 22 ++ R/vtreat.R | 12 - R/vtreatImpl.R | 39 ++-- README.md | 96 +++++++--- build/vignette.rds |binary inst/doc/vtreat.R | 7 inst/doc/vtreat.Rmd | 83 ++++++-- inst/doc/vtreat.html | 363 +++++++++++++++++++------------------- inst/doc/vtreatCrossFrames.R |only inst/doc/vtreatCrossFrames.Rmd |only inst/doc/vtreatCrossFrames.html |only inst/doc/vtreatOverfit.R | 23 -- inst/doc/vtreatOverfit.Rmd | 67 ++----- inst/doc/vtreatOverfit.html | 148 +++++++-------- inst/doc/vtreatScaleMode.R |only inst/doc/vtreatScaleMode.Rmd |only inst/doc/vtreatScaleMode.html |only inst/doc/vtreatSignifcance.R |only inst/doc/vtreatSignifcance.Rmd |only inst/doc/vtreatSignifcance.html |only inst/doc/vtreatVariableTypes.R |only inst/doc/vtreatVariableTypes.Rmd |only inst/doc/vtreatVariableTypes.html |only man/buildEvalSets.Rd |only man/catScore.Rd | 2 man/designTreatmentsC.Rd | 4 man/designTreatmentsN.Rd | 4 man/designTreatmentsZ.Rd | 4 man/format.vtreatment.Rd | 2 man/hold1OutMeans.Rd | 2 man/mkCrossFrameCExperiment.Rd | 10 - man/mkCrossFrameNExperiment.Rd | 10 - man/prepare.Rd | 7 man/pressStatOfBestLinearFit.Rd | 2 man/print.vtreatment.Rd | 2 man/vnames.Rd | 2 man/vorig.Rd | 2 man/vtreat-package.Rd | 31 ++- tests/testthat/testDataTable.R | 9 tests/testthat/testExpmtDesign.R |only tests/testthat/testScale.R |only tests/testthat/testdplyr.R |only vignettes/superX.png |only vignettes/vtreat.Rmd | 83 ++++++-- vignettes/vtreatCrossFrames.Rmd |only vignettes/vtreatOverfit.Rmd | 64 ++---- vignettes/vtreatScaleMode.Rmd |only vignettes/vtreatSignifcance.Rmd |only vignettes/vtreatVariableTypes.Rmd |only vignettes/vtreatX.png |only 54 files changed, 774 insertions(+), 541 deletions(-)
Title: Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Description: The qgraph package can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.
Author: Sacha Epskamp, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between qgraph versions 1.3.2 dated 2016-01-19 and 1.3.3 dated 2016-04-29
qgraph-1.3.2/qgraph/R/qgraphBoot.R |only qgraph-1.3.3/qgraph/DESCRIPTION | 6 +-- qgraph-1.3.3/qgraph/MD5 | 25 ++++++------ qgraph-1.3.3/qgraph/NEWS | 36 +++++++++++------- qgraph-1.3.3/qgraph/R/IntInNode.r | 12 +++++- qgraph-1.3.3/qgraph/R/PLOT.R | 65 +++++++++++++++++++++++++++++++-- qgraph-1.3.3/qgraph/R/averageLayout.R | 4 +- qgraph-1.3.3/qgraph/R/centrality.R | 11 +++-- qgraph-1.3.3/qgraph/R/drawNode.R | 27 +++++++++++++ qgraph-1.3.3/qgraph/R/glasso_methods.R | 5 +- qgraph-1.3.3/qgraph/R/logGaus.R | 4 +- qgraph-1.3.3/qgraph/R/qgraph.R | 27 +++++++++++++ qgraph-1.3.3/qgraph/man/EBICglasso.Rd | 7 ++- qgraph-1.3.3/qgraph/man/qgraph.Rd | 14 ++++++- 14 files changed, 193 insertions(+), 50 deletions(-)
Title: Statistical Methods for Analysing Multivariate Abundance Data
Description: A set of tools for displaying, modeling and analysing
multivariate abundance data in community ecology. See
'mvabund-package.Rd' for details of overall package organization.
The package is implemented with the Gnu Scientific Library
(http://www.gnu.org/software/gsl/) and Rcpp
(http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright, Dirk Eddelbuettel and David Warton
Maintainer: David Warton <David.Warton@unsw.edu.au>
Diff between mvabund versions 3.11.7 dated 2016-03-31 and 3.11.9 dated 2016-04-29
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- R/anova.manylm.R | 2 +- R/summary.manyglm.R | 2 +- README.md | 1 - cleanup |only man/anova.manylm.Rd | 6 +++--- src/Rinterface.cpp | 4 ++-- src/anova.cpp | 34 +++++++++++++++++++++++++++------- src/glmtest.cpp | 28 ++++++++++++++++------------ src/resampTest.h | 3 +++ src/summary.cpp | 29 ++++++++++++++++++++--------- 12 files changed, 88 insertions(+), 50 deletions(-)
Title: Multidimensional Iterative Proportional Fitting and Alternative
Models
Description: An implementation of the iterative proportional fitting (IPFP),
maximum likelihood, minimum chi-square and weighted least squares procedures
for updating a N-dimensional array with respect to given target marginal
distributions (which, in turn can be multi-dimensional). The package also
provides an application of the IPFP to simulate multivariate Bernoulli
distributions.
Author: Johan Barthelemy [aut, cre], Thomas Suesse [aut], Mohammad Namazi-Rad [ctb]
Maintainer: Johan Barthelemy <johan@uow.edu.au>
Diff between mipfp versions 3.0 dated 2016-04-22 and 3.0-1 dated 2016-04-29
DESCRIPTION | 8 MD5 | 10 R/ipfp_multi_dim.R | 438 +++++++++++++++++++++--------------------- R/models.R | 458 ++++++++++++++++++++++---------------------- man/Ipfp.Rd | 367 +++++++++++++++++------------------ man/ObtainModelEstimates.Rd | 283 +++++++++++++-------------- 6 files changed, 787 insertions(+), 777 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [cre, ctb],
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Barret Schloerke [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.8.3 dated 2016-03-04 and 0.9 dated 2016-04-29
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS | 9 +++++++++ R/eval.r | 11 +++++++++-- R/parse.r | 42 ++++++++++++++++++++++++++---------------- man/parse_all.Rd | 13 ++++++++----- tests/test-parse.R |only tests/testthat/test-parse.r | 6 ++++++ 8 files changed, 69 insertions(+), 33 deletions(-)
Title: Diff, Patch and Merge for Data.frames
Description: Diff, patch and merge for data frames. Document changes in data
sets and use them to apply patches. Changes to data can be made visible by using
render_diff. The V8 package is used to wrap the 'daff.js' JavaScript library
which is included in the package.
Author: Paul Fitzpatrick [aut] (JavaScript original,
http://paulfitz.github.io/daff/),
Edwin de Jonge [aut, cre] (R wrapper)
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between daff versions 0.1.4 dated 2015-04-18 and 0.2.0 dated 2016-04-29
DESCRIPTION | 18 LICENSE | 4 MD5 | 58 NAMESPACE | 2 NEWS | 3 R/TableView.R | 126 R/context.R | 16 R/daff-package.r | 44 R/diff-data.R | 104 R/merge-data.R | 156 R/patch-data.R | 68 R/read-diff.R | 2 R/render-diff.R | 68 R/utils.R | 12 README.md | 191 inst/js/daff.js |13317 ++++++++++++++++++++++++++-------------- inst/js/util.js | 12 man/daff.Rd | 2 man/diff_data.Rd | 2 man/differs_from.Rd | 2 man/merge_data.Rd | 2 man/patch_data.Rd | 2 man/readwrite.Rd | 2 man/render_diff.Rd | 2 man/which_conflicts.Rd | 2 tests/testthat.R | 8 tests/testthat/testdiff-data.R | 100 tests/testthat/testmerge-data.R | 56 tests/testthat/testpatch-data.R | 112 tests/testthat/testreadwrite.R | 32 30 files changed, 9437 insertions(+), 5088 deletions(-)
Title: Convolution-Based Nonstationary Spatial Modeling
Description: Fits convolution-based nonstationary
Gaussian process models to point-referenced spatial data. The nonstationary
covariance function allows the user to specify the underlying correlation
structure and which spatial dependence parameters should be allowed to
vary over space: the anisotropy, nugget variance, and process variance.
The parameters are estimated via maximum likelihood, using a local
likelihood approach. Also provided are functions to fit stationary spatial
models for comparison, calculate the kriging predictor and standard errors,
and create various plots to visualize nonstationarity.
Author: Mark D. Risser [aut, cre]
Maintainer: Mark D. Risser <markdrisser@gmail.com>
Diff between convoSPAT versions 1.0 dated 2015-09-28 and 1.1 dated 2016-04-29
DESCRIPTION | 8 ++-- MD5 | 64 ++++++++++++++++++------------------ NAMESPACE | 2 - R/convoSPAT_fitpred.R | 63 +++++++++++++++++++++++++++++++++-- R/convoSPAT_simulate.R | 46 ++++++++++++------------- R/convoSPAT_summplot.R | 14 +++++-- man/Aniso_fit.Rd | 12 ++++-- man/NSconvo_fit.Rd | 18 ++++++---- man/NSconvo_sim.Rd | 24 ++++++------- man/US.mc.grids.Rd | 2 - man/US.prediction.locs.Rd | 2 - man/USprecip97.Rd | 2 - man/evaluate_CV.Rd | 9 ++--- man/f_mc_kernels.Rd | 20 +++++------ man/kernel_cov.Rd | 2 - man/make_aniso_loglik.Rd | 2 - man/make_aniso_loglik_kappa.Rd | 2 - man/make_global_loglik1.Rd | 2 - man/make_global_loglik1_kappa.Rd | 2 - man/make_global_loglik2.Rd | 2 - man/make_global_loglik2_kappa.Rd | 2 - man/make_global_loglik3.Rd | 2 - man/make_global_loglik3_kappa.Rd | 2 - man/make_global_loglik4_kappa.Rd | 2 - man/mc_N.Rd | 2 - man/plot.Aniso.Rd | 2 - man/plot.NSconvo.Rd | 2 - man/predict.Aniso.Rd | 2 - man/predict.NSconvo.Rd | 2 - man/simdata.Rd | 2 - man/summary.Aniso.Rd | 2 - man/summary.NSconvo.Rd | 2 - vignettes/RisserCalder_LLEpaper.pdf |binary 33 files changed, 196 insertions(+), 126 deletions(-)
Title: An Implementation of Several Approaches to Utility-Based
Learning for Both Classification and Regression Tasks
Description: Provides a set of functions that can be used to obtain better predictive performance on cost-sensitive and cost/benefits tasks (for both regression and classification). This includes re-sampling approaches, cost-based methods, special purpose evaluation metrics as well as specific learning systems.
Author: Paula Branco [aut, cre],
Rita Ribeiro [aut, ctb],
Luis Torgo [aut, ctb]
Maintainer: Paula Branco <paobranco@gmail.com>
Diff between UBL versions 0.0.3 dated 2016-04-25 and 0.0.4 dated 2016-04-29
UBL-0.0.3/UBL/R/gaussNoiseRegressNA.R |only UBL-0.0.3/UBL/R/metacost.R |only UBL-0.0.3/UBL/R/randOverRegressNA.R |only UBL-0.0.3/UBL/man/metacostClassif.Rd |only UBL-0.0.4/UBL/CHANGES | 8 ++++++-- UBL-0.0.4/UBL/DESCRIPTION | 8 ++++---- UBL-0.0.4/UBL/MD5 | 18 +++++++----------- UBL-0.0.4/UBL/R/CallFPhi.R | 6 +++--- UBL-0.0.4/UBL/inst/CITATION | 22 +++++++++++++--------- UBL-0.0.4/UBL/man/randOverRegress.Rd | 14 ++++++++++++++ UBL-0.0.4/UBL/src/neighbours.f90 | 21 ++++++++++++--------- UBL-0.0.4/UBL/src/phi.f90 | 33 ++++++++++++++++++--------------- 12 files changed, 77 insertions(+), 53 deletions(-)
Title: Toolkit for Weighting and Analysis of Nonequivalent Groups
Description: Provides functions for propensity score
estimating and weighting, nonresponse weighting, and diagnosis
of the weights. This package was originally developed by Drs.
Ridgeway, McCaffrey, and Morral. Burgette, Griffin and
McCaffrey updated the package during 2011-2016.
Author: Greg Ridgeway, Dan McCaffrey, Andrew Morral, Beth Ann Griffin, Lane Burgette
<burgette@rand.org>
Maintainer: Lane Burgette <burgette@rand.org>
Diff between twang versions 1.4-9.3 dated 2015-02-02 and 1.4-9.5 dated 2016-04-29
DESCRIPTION | 18 ++--- MD5 | 70 +++++++++++++------- NAMESPACE | 17 ++++- R/bal.table.R | 130 +++++--------------------------------- R/bal.table.mnps.R |only R/bal.table.ps.R |only R/boxplot.mnps.R | 13 ++- R/boxplot.ps.R | 7 +- R/diag.plot.color.R | 63 +++++++++++++----- R/dx.wts.R | 10 +- R/get.weights.R | 2 R/get.weights.num.R |only R/get.weights.unstab.R |only R/iptw.R |only R/plot.iptw.R |only R/plot.mniptw.R |only R/plot.mnps.R | 156 +++++++++++++++++++++++++++++++++------------- R/print.summary.iptw.R |only R/print.summary.mniptw.R |only R/sensitivity.R |only R/summary.iptw.R |only R/summary.mniptw.R |only build/vignette.rds |binary data/AOD.RData |binary data/egsingle.RData |binary data/iptwExLong.RData |only data/iptwExWide.RData |only data/lalonde.RData |binary data/lindner.RData |binary data/mnIptwExLong.RData |only data/mnIptwExWide.RData |only data/raceprofiling.RData |binary inst/doc/mnps.pdf |binary inst/doc/twang.pdf |binary inst/doc/twang.rnw | 6 - man/bal.table.Rd | 3 man/boxplot.mnps.Rd | 5 + man/boxplot.ps.Rd | 5 - man/get.weights.num.Rd |only man/get.weights.unstab.Rd |only man/iptw.Rd |only man/iptwExLong.Rd |only man/iptwExWide.Rd |only man/mnIptwExLong.Rd |only man/mnIptwExWide.Rd |only man/plot.mnps.Rd | 4 - man/sensitivity.Rd |only vignettes/twang.rnw | 6 - 48 files changed, 285 insertions(+), 230 deletions(-)
Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for 'SVG', 'DrawingML' for
Microsoft Word, PowerPoint and Excel.
Author: David Gohel [aut, cre],
Bob Rudis [ctb] (the javascript code used by function set_attr),
Francois Brunetti [ctb] (clipping algorithms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.0.8 dated 2016-03-04 and 0.0.9 dated 2016-04-29
DESCRIPTION | 8 ++--- MD5 | 40 +++++++++++++++++----------- NAMESPACE | 2 + NEWS | 11 +++++++ R/RcppExports.R | 4 ++ R/dml_xlsx.R |only R/write_xlsx.R |only inst/templates/vanilla.xlsx |only man/dml_xlsx.Rd |only man/write_xlsx.Rd |only src/RcppExports.cpp | 26 ++++++++++++++++++ src/dsvg.cpp | 17 +++++------- src/empty_body_text.cpp | 9 ++++++ src/empty_body_text.h | 1 src/main_tree.cpp | 49 +++++++++++++++++++++++++++++++++++ src/main_tree.h | 2 + src/nv_pr.cpp | 17 ++++++++++++ src/nv_pr.h | 1 src/xlsx.cpp |only tests/testthat/test-dml-editable.R | 24 +++++++++++++++++ tests/testthat/test-dml-extensions.R | 9 ++++++ tests/testthat/test-dml-filename.R | 9 ++++++ tests/testthat/test-xlsx-lines.R |only tests/testthat/test-xlsx-raster.R |only tests/testthat/test-xlsx-text.R |only tests/testthat/test-xlsx-xfrm.R |only 26 files changed, 201 insertions(+), 28 deletions(-)
Title: Remote R: Control a Remote R Session from a Local One
Description: A set of utilities for controlling a remote R session
from a local one. Simply set up a server (see package vignette
for more details) and connect to it from your local R session,
including 'RStudio'. Network communication is handled
by the 'ZeroMQ' library by way of the 'pbdZMQ' package. The
client/server framework is a custom 'REPL'.
Author: Drew Schmidt [aut, cre],
Wei-Chen Chen [aut]
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between remoter versions 0.2-0 dated 2016-02-04 and 0.3-2 dated 2016-04-29
remoter-0.2-0/remoter/R/repl.r |only remoter-0.2-0/remoter/TODO |only remoter-0.3-2/remoter/ChangeLog | 38 ++ remoter-0.3-2/remoter/DESCRIPTION | 20 - remoter-0.3-2/remoter/MD5 | 71 +++-- remoter-0.3-2/remoter/NAMESPACE | 11 remoter-0.3-2/remoter/R/000_globalVariables.r | 13 remoter-0.3-2/remoter/R/00_internals.r |only remoter-0.3-2/remoter/R/c2s.r | 48 ++- remoter-0.3-2/remoter/R/checks.r |only remoter-0.3-2/remoter/R/client.r | 203 +++++++++++++- remoter-0.3-2/remoter/R/comms.r | 101 ++++++- remoter-0.3-2/remoter/R/crypto.r |only remoter-0.3-2/remoter/R/exit.r | 22 + remoter-0.3-2/remoter/R/logging.r |only remoter-0.3-2/remoter/R/printing.r |only remoter-0.3-2/remoter/R/relay.r |only remoter-0.3-2/remoter/R/remoter-package.r | 10 remoter-0.3-2/remoter/R/s2c.r | 42 ++- remoter-0.3-2/remoter/R/server.r | 206 +++++++++++++- remoter-0.3-2/remoter/R/state.r | 96 +++--- remoter-0.3-2/remoter/R/utils.r | 24 + remoter-0.3-2/remoter/R/zzz.r |only remoter-0.3-2/remoter/README.md | 30 +- remoter-0.3-2/remoter/build/vignette.rds |binary remoter-0.3-2/remoter/inst/CITATION |only remoter-0.3-2/remoter/inst/doc/remoter.Rmd | 103 ++++++- remoter-0.3-2/remoter/inst/doc/remoter.html | 234 +++++++++++++---- remoter-0.3-2/remoter/man/c2s.Rd | 2 remoter-0.3-2/remoter/man/client.Rd | 7 remoter-0.3-2/remoter/man/exit.Rd | 7 remoter-0.3-2/remoter/man/has.sodium.Rd |only remoter-0.3-2/remoter/man/internals.Rd |only remoter-0.3-2/remoter/man/is.secure.Rd |only remoter-0.3-2/remoter/man/relay.Rd |only remoter-0.3-2/remoter/man/remoter-package.Rd | 2 remoter-0.3-2/remoter/man/server.Rd | 27 + remoter-0.3-2/remoter/man/showlog.Rd |only remoter-0.3-2/remoter/vignettes/include/custom.css | 5 remoter-0.3-2/remoter/vignettes/include/header.html |only remoter-0.3-2/remoter/vignettes/include/headers.js | 1 remoter-0.3-2/remoter/vignettes/include/remoter.bib | 8 remoter-0.3-2/remoter/vignettes/pics/remoter_relay.png |only remoter-0.3-2/remoter/vignettes/rebuild | 3 remoter-0.3-2/remoter/vignettes/remoter.Rmd | 103 ++++++- 45 files changed, 1179 insertions(+), 258 deletions(-)
Title: Variable Selection in Finite Mixture of AFT Regression and FMR
Description: Provides parameter estimation as well as variable selection in
Finite Mixture of Accelerated Failure Time Regression and Finite
Mixture of Regression Models.
Furthermore, this package provides Ridge Regression and Elastic Net.
Author: Farhad Shokoohi <shokoohi@icloud.com>
Abbas Khalili
Masoud Asgharian
Shili Lin
Maintainer: Farhad Shokoohi <shokoohi@icloud.com>
Diff between fmrs versions 1.0-5 dated 2016-03-27 and 1.0-7 dated 2016-04-29
fmrs-1.0-5/fmrs/R/FMR_Surv_CwTuneSel.R |only fmrs-1.0-5/fmrs/R/FMR_Surv_MLE.R |only fmrs-1.0-5/fmrs/R/FMR_Surv_VarSel.R |only fmrs-1.0-5/fmrs/R/FMRsDataGen.R |only fmrs-1.0-5/fmrs/R/fmrs.lamb.object.R |only fmrs-1.0-5/fmrs/R/frms.fit.object.R |only fmrs-1.0-5/fmrs/man/fmrs.fit-class.Rd |only fmrs-1.0-5/fmrs/man/fmrs.gen.data.Rd |only fmrs-1.0-5/fmrs/man/fmrs.lambda-class.Rd |only fmrs-1.0-5/fmrs/man/fmrs.mle.Rd |only fmrs-1.0-5/fmrs/man/fmrs.tunsel.Rd |only fmrs-1.0-5/fmrs/man/fmrs.varsel.Rd |only fmrs-1.0-7/fmrs/DESCRIPTION | 18 +- fmrs-1.0-7/fmrs/MD5 | 55 ++++--- fmrs-1.0-7/fmrs/NAMESPACE | 25 ++- fmrs-1.0-7/fmrs/NEWS | 40 +++-- fmrs-1.0-7/fmrs/R/AllClasses.R |only fmrs-1.0-7/fmrs/R/AllGenerics.R |only fmrs-1.0-7/fmrs/R/AllMethods.R |only fmrs-1.0-7/fmrs/R/fmrs-package.R | 24 +-- fmrs-1.0-7/fmrs/R/zzz.R | 4 fmrs-1.0-7/fmrs/inst/CITATION |only fmrs-1.0-7/fmrs/inst/doc/usingfmrs.R | 51 +++--- fmrs-1.0-7/fmrs/inst/doc/usingfmrs.Rmd | 213 ++++++++++++++-------------- fmrs-1.0-7/fmrs/inst/doc/usingfmrs.html | 112 +++++++------- fmrs-1.0-7/fmrs/man/BIC-methods.Rd |only fmrs-1.0-7/fmrs/man/coefficients-methods.Rd |only fmrs-1.0-7/fmrs/man/dispersion-methods.Rd |only fmrs-1.0-7/fmrs/man/fitted-methods.Rd |only fmrs-1.0-7/fmrs/man/fmrs-package.Rd | 26 ++- fmrs-1.0-7/fmrs/man/fmrs.gendata-methods.Rd |only fmrs-1.0-7/fmrs/man/fmrs.mle-methods.Rd |only fmrs-1.0-7/fmrs/man/fmrs.tunsel-methods.Rd |only fmrs-1.0-7/fmrs/man/fmrs.varsel-methods.Rd |only fmrs-1.0-7/fmrs/man/fmrsfit-class.Rd |only fmrs-1.0-7/fmrs/man/fmrstunpar-class.Rd |only fmrs-1.0-7/fmrs/man/logLik-methods.Rd |only fmrs-1.0-7/fmrs/man/mixProp-methods.Rd |only fmrs-1.0-7/fmrs/man/ncomp-methods.Rd |only fmrs-1.0-7/fmrs/man/ncov-methods.Rd |only fmrs-1.0-7/fmrs/man/nobs-methods.Rd |only fmrs-1.0-7/fmrs/man/residuals-methods.Rd |only fmrs-1.0-7/fmrs/man/show-methods.Rd |only fmrs-1.0-7/fmrs/man/summary-methods.Rd |only fmrs-1.0-7/fmrs/man/weights-methods.Rd |only fmrs-1.0-7/fmrs/vignettes/usingfmrs.Rmd | 213 ++++++++++++++-------------- 46 files changed, 429 insertions(+), 352 deletions(-)
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