Fri, 29 Apr 2016

Package IAT updated to version 0.3 with previous version 0.2 dated 2014-07-12

Title: Cleaning and Visualizing Implicit Association Test (IAT) Data
Description: Implements the standard D-Scoring algorithm (Greenwald, Banaji, & Nosek, 2003) for Implicit Association Test (IAT) data and includes plotting capabilities for exploring raw IAT data.
Author: Dan Martin <dpmartin42@gmail.com>
Maintainer: Dan Martin <dpmartin42@gmail.com>

Diff between IAT versions 0.2 dated 2014-07-12 and 0.3 dated 2016-04-29

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More information about IAT at CRAN
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Package soilDB updated to version 1.8 with previous version 1.7 dated 2016-02-16

Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: D.E. Beaudette and J. Skovlin, and S. Roecker
Maintainer: D.E. Beaudette <dylan.beaudette@ca.usda.gov>

Diff between soilDB versions 1.7 dated 2016-02-16 and 1.8 dated 2016-04-29

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Package simmer updated to version 3.2.1 with previous version 3.2.0 dated 2016-04-04

Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation (DES) package for R. Designed to be a generic framework like SimPy or SimJulia, it leverages the use of Rcpp to boost the performance and turning DES in R feasible. As a noteworthy characteristic, simmer exploits the concept of trajectory: a common path in the simulation model for entities of the same type.
Author: Bart Smeets [aut], Iñaki Ucar [aut, cre]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>

Diff between simmer versions 3.2.0 dated 2016-04-04 and 3.2.1 dated 2016-04-29

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More information about simmer at CRAN
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Package quantregForest updated to version 1.3 with previous version 1.2 dated 2016-03-22

Title: Quantile Regression Forests
Description: Quantile Regression Forests is a tree-based ensemble method for estimation of conditional quantiles. It is particularly well suited for high-dimensional data. Predictor variables of mixed classes can be handled. The package is dependent on the package randomForests, written by Andy Liaw.
Author: Nicolai Meinshausen
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>

Diff between quantregForest versions 1.2 dated 2016-03-22 and 1.3 dated 2016-04-29

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New package prodigenr with initial version 0.2.6
Package: prodigenr
Title: Research Project Directory Generator
Version: 0.2.6
Authors@R: person("Luke", "Johnston", , "lwjohnst@gmail.com", c("aut", "cre"))
Description: Create a project directory structure, along with typical files for that project. This allows projects to be quickly and easily created, as well as for them to be standardized. Designed specifically with scientists in mind (mainly bio-medical researchers, but likely applies to other fields).
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: true
Suggests: rmarkdown, git2r, packrat, knitr, testthat
RoxygenNote: 5.0.1
VignetteBuilder: knitr
URL: https://github.com/lwjohnst86/prodigenr
BugReports: https://github.com/lwjohnst86/prodigenr/issues
NeedsCompilation: no
Packaged: 2016-04-29 17:00:58 UTC; luke
Author: Luke Johnston [aut, cre]
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Repository: CRAN
Date/Publication: 2016-04-30 00:16:00

More information about prodigenr at CRAN
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Package pcIRT updated to version 0.2.2 with previous version 0.2 dated 2015-07-17

Title: IRT Models for Polytomous and Continuous Item Responses
Description: Estimates the multidimensional polytomous Rasch model (Rasch, 1961) and the Continuous Rating Scale model (Mueller, 1987).
Author: Christine Hohensinn
Maintainer: Christine Hohensinn <christine.hohensinn@univie.ac.at>

Diff between pcIRT versions 0.2 dated 2015-07-17 and 0.2.2 dated 2016-04-29

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New package plac with initial version 0.1.1
Package: plac
Type: Package
Title: A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated Data
Version: 0.1.1
Date: 2016-04-29
Authors@R: person("Fan", "Wu", email = "fannwu@umich.edu", role = c("aut", "cre"))
Description: A semi-parametric estimation method for the Cox model with left-truncated data using augmented information from the marginal of truncation times.
Depends: R (>= 3.2.0), survival (>= 2.38-3)
License: GPL-3
LazyData: TRUE
Imports: Rcpp (>= 0.12.1),
URL: https://github.com/942kid/plac
BugReports: https://github.com/942kid/plac/issues
LinkingTo: Rcpp, RcppEigen
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: yes
Packaged: 2016-04-29 11:25:40 UTC; fan
Author: Fan Wu [aut, cre]
Maintainer: Fan Wu <fannwu@umich.edu>
Repository: CRAN
Date/Publication: 2016-04-30 00:15:59

More information about plac at CRAN
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Package nycflights13 updated to version 0.2.0 with previous version 0.1 dated 2014-07-22

Title: Flights that Departed NYC in 2013
Description: Airline on-time data for all flights departing NYC in 2013. Also includes useful 'metadata' on airlines, airports, weather, and planes.
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between nycflights13 versions 0.1 dated 2014-07-22 and 0.2.0 dated 2016-04-29

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Package npregfast updated to version 1.3.0 with previous version 1.2.1 dated 2016-02-16

Title: Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions
Description: A method for obtain nonparametric estimates of regression models with or without factor-by-curve interactions using local polynomial kernel smoothers or splines. Additionally, a parametric model (allometric model) can be estimated.
Author: Marta Sestelo [aut, cre], Nora M. Villanueva [aut], Javier Roca-Pardinas [aut]
Maintainer: Marta Sestelo <sestelo@uvigo.es>

Diff between npregfast versions 1.2.1 dated 2016-02-16 and 1.3.0 dated 2016-04-29

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Package multiplex updated to version 1.9 with previous version 1.8.2 dated 2016-03-08

Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with this package. Among other things, it is possible to create and manipulate multivariate network data with different formats, and there are effective ways available to treat multiple networks with routines that combine algebraic systems like the partially ordered semigroup or the semiring structure together with the relational bundles occurring in different types of multivariate network data sets. As well an algebraic approach for two-mode networks is made through Galois derivations between families of the pair of subsets.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>

Diff between multiplex versions 1.8.2 dated 2016-03-08 and 1.9 dated 2016-04-29

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Package googleformr updated to version 0.0.3 with previous version 0.0.2 dated 2016-03-26

Title: Collect Data Programmatically by POST Methods to Google Forms
Description: GET and POST data to Google Forms; an API to Google Forms, allowing users to POST data securely to Google Forms without needing authentication or permissioning.
Author: Steve Simpson [aut, cre]
Maintainer: Steve Simpson <steven.troy.simpson@gmail.com>

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Package GetTDData updated to version 1.2 with previous version 1.1 dated 2016-04-13

Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>

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Package fastclime updated to version 1.4.1 with previous version 1.4 dated 2016-04-18

Title: A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector
Description: Provides a method of recovering the precision matrix efficiently and solving for the dantzig selector by applying the parametric simplex method. The computation is based on a linear optimization solver. It also contains a generic LP solver and a parameterized LP solver using parametric simplex method.
Author: Haotian Pang, Di Qi, Han Liu and Robert Vanderbei
Maintainer: Haotian Pang <hpang@princeton.edu>

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Package vtreat updated to version 0.5.23 with previous version 0.5.22 dated 2016-01-07

Title: Simple Variable Treatment
Description: Prepares variables so that data has fewer exceptional cases, making it easier to safely use models in production. Common problems 'vtreat' defends against: Inf, NA, too many categorical values, rare categorical values, new categorical values (levels seen during application, but not during training). 'vtreat::prepare' should be used as you would use 'model.matrix'.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>

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New package sparsebnUtils with initial version 0.0.1
Package: sparsebnUtils
Title: Utilities for Learning Sparse Bayesian Networks
Version: 0.0.1
Date: 2016-04-28
Authors@R: person("Bryon", "Aragam", email = "sparsebn@gmail.com", role = c("aut", "cre"))
Maintainer: Bryon Aragam <sparsebn@gmail.com>
Description: A set of tools for representing and estimating sparse Bayesian networks from continuous and discrete data.
Depends: R (>= 3.2.3)
Imports: Matrix, stats, utils
Suggests: graph, igraph, network, testthat
URL: https://github.com/itsrainingdata/sparsebnUtils
BugReports: https://github.com/itsrainingdata/sparsebnUtils/issues
License: GPL (>= 2)
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-28 19:25:10 UTC; Zigmund-2
Author: Bryon Aragam [aut, cre]
Repository: CRAN
Date/Publication: 2016-04-29 12:11:58

More information about sparsebnUtils at CRAN
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Package qgraph updated to version 1.3.3 with previous version 1.3.2 dated 2016-01-19

Title: Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation
Description: The qgraph package can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.
Author: Sacha Epskamp, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

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Package mvabund updated to version 3.11.9 with previous version 3.11.7 dated 2016-03-31

Title: Statistical Methods for Analysing Multivariate Abundance Data
Description: A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See 'mvabund-package.Rd' for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright, Dirk Eddelbuettel and David Warton
Maintainer: David Warton <David.Warton@unsw.edu.au>

Diff between mvabund versions 3.11.7 dated 2016-03-31 and 3.11.9 dated 2016-04-29

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Package mipfp updated to version 3.0-1 with previous version 3.0 dated 2016-04-22

Title: Multidimensional Iterative Proportional Fitting and Alternative Models
Description: An implementation of the iterative proportional fitting (IPFP), maximum likelihood, minimum chi-square and weighted least squares procedures for updating a N-dimensional array with respect to given target marginal distributions (which, in turn can be multi-dimensional). The package also provides an application of the IPFP to simulate multivariate Bernoulli distributions.
Author: Johan Barthelemy [aut, cre], Thomas Suesse [aut], Mohammad Namazi-Rad [ctb]
Maintainer: Johan Barthelemy <johan@uow.edu.au>

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Package evaluate updated to version 0.9 with previous version 0.8.3 dated 2016-03-04

Title: Parsing and Evaluation Tools that Provide More Details than the Default
Description: Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.
Author: Hadley Wickham [aut], Yihui Xie [cre, ctb], Michael Lawrence [ctb], Thomas Kluyver [ctb], Barret Schloerke [ctb]
Maintainer: Yihui Xie <xie@yihui.name>

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Package daff updated to version 0.2.0 with previous version 0.1.4 dated 2015-04-18

Title: Diff, Patch and Merge for Data.frames
Description: Diff, patch and merge for data frames. Document changes in data sets and use them to apply patches. Changes to data can be made visible by using render_diff. The V8 package is used to wrap the 'daff.js' JavaScript library which is included in the package.
Author: Paul Fitzpatrick [aut] (JavaScript original, http://paulfitz.github.io/daff/), Edwin de Jonge [aut, cre] (R wrapper)
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>

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Package convoSPAT updated to version 1.1 with previous version 1.0 dated 2015-09-28

Title: Convolution-Based Nonstationary Spatial Modeling
Description: Fits convolution-based nonstationary Gaussian process models to point-referenced spatial data. The nonstationary covariance function allows the user to specify the underlying correlation structure and which spatial dependence parameters should be allowed to vary over space: the anisotropy, nugget variance, and process variance. The parameters are estimated via maximum likelihood, using a local likelihood approach. Also provided are functions to fit stationary spatial models for comparison, calculate the kriging predictor and standard errors, and create various plots to visualize nonstationarity.
Author: Mark D. Risser [aut, cre]
Maintainer: Mark D. Risser <markdrisser@gmail.com>

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Package UBL updated to version 0.0.4 with previous version 0.0.3 dated 2016-04-25

Title: An Implementation of Several Approaches to Utility-Based Learning for Both Classification and Regression Tasks
Description: Provides a set of functions that can be used to obtain better predictive performance on cost-sensitive and cost/benefits tasks (for both regression and classification). This includes re-sampling approaches, cost-based methods, special purpose evaluation metrics as well as specific learning systems.
Author: Paula Branco [aut, cre], Rita Ribeiro [aut, ctb], Luis Torgo [aut, ctb]
Maintainer: Paula Branco <paobranco@gmail.com>

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Package twang updated to version 1.4-9.5 with previous version 1.4-9.3 dated 2015-02-02

Title: Toolkit for Weighting and Analysis of Nonequivalent Groups
Description: Provides functions for propensity score estimating and weighting, nonresponse weighting, and diagnosis of the weights. This package was originally developed by Drs. Ridgeway, McCaffrey, and Morral. Burgette, Griffin and McCaffrey updated the package during 2011-2016.
Author: Greg Ridgeway, Dan McCaffrey, Andrew Morral, Beth Ann Griffin, Lane Burgette <burgette@rand.org>
Maintainer: Lane Burgette <burgette@rand.org>

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Package rvg updated to version 0.0.9 with previous version 0.0.8 dated 2016-03-04

Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for 'SVG', 'DrawingML' for Microsoft Word, PowerPoint and Excel.
Author: David Gohel [aut, cre], Bob Rudis [ctb] (the javascript code used by function set_attr), Francois Brunetti [ctb] (clipping algorithms)
Maintainer: David Gohel <david.gohel@ardata.fr>

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Package remoter updated to version 0.3-2 with previous version 0.2-0 dated 2016-02-04

Title: Remote R: Control a Remote R Session from a Local One
Description: A set of utilities for controlling a remote R session from a local one. Simply set up a server (see package vignette for more details) and connect to it from your local R session, including 'RStudio'. Network communication is handled by the 'ZeroMQ' library by way of the 'pbdZMQ' package. The client/server framework is a custom 'REPL'.
Author: Drew Schmidt [aut, cre], Wei-Chen Chen [aut]
Maintainer: Drew Schmidt <wrathematics@gmail.com>

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More information about remoter at CRAN
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New package irtDemo with initial version 0.1.0
Package: irtDemo
Type: Package
Title: Item Response Theory Demo Collection
Version: 0.1.0
Date: 2016-04-27
Author: Metin Bulus [aut,cre]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Description: Includes a collection of shiny applications to demonstrate or to explore fundamental item response theory (IRT) concepts such as estimation, scoring, and multidimensional IRT models.
Imports: shiny (>= 0.13.2), shinydashboard (>= 0.5.1), fGarch (>= 3010.82)
Depends: R (>= 3.2.4)
License: GPL (>= 2)
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-04-28 13:18:30 UTC; METIN
Repository: CRAN
Date/Publication: 2016-04-29 07:31:38

More information about irtDemo at CRAN
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Package fmrs updated to version 1.0-7 with previous version 1.0-5 dated 2016-03-27

Title: Variable Selection in Finite Mixture of AFT Regression and FMR
Description: Provides parameter estimation as well as variable selection in Finite Mixture of Accelerated Failure Time Regression and Finite Mixture of Regression Models. Furthermore, this package provides Ridge Regression and Elastic Net.
Author: Farhad Shokoohi <shokoohi@icloud.com> Abbas Khalili Masoud Asgharian Shili Lin
Maintainer: Farhad Shokoohi <shokoohi@icloud.com>

Diff between fmrs versions 1.0-5 dated 2016-03-27 and 1.0-7 dated 2016-04-29

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New package ClusteredMutations with initial version 1.0.1
Package: ClusteredMutations
Version: 1.0.1
Date: 2016-04-28
Title: Location and Visualization of Clustered Somatic Mutations
Authors@R: person("David", "Lora", email = "david@h12o.es", role = c("aut", "cre"))
Depends: seriation
Description: Identification and visualization of groups of closely spaced mutations in the DNA sequence of cancer genome. The extremely mutated zones are searched in the symmetric dissimilarity matrix using the anti-Robinson matrix properties. Different data sets are obtained to describe and plot the clustered mutations information.
License: GPL-3
Packaged: 2016-04-28 15:54:35 UTC; david
Author: David Lora [aut, cre]
Maintainer: David Lora <david@h12o.es>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-04-29 07:44:36

More information about ClusteredMutations at CRAN
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