Sat, 30 Apr 2016

Package StressStrength updated to version 1.0.2 with previous version 1.0.1 dated 2014-11-25

Title: Computation and Estimation of Reliability of Stress-Strength Models
Description: Reliability of (normal) stress-strength models and for building two-sided or one-sided confidence intervals according to different approximate procedures.
Author: Alessandro Barbiero <alessandro.barbiero@unimi.it>, Riccardo Inchingolo <dott.inchingolo_r@libero.it>
Maintainer: Alessandro Barbiero <alessandro.barbiero@unimi.it>

Diff between StressStrength versions 1.0.1 dated 2014-11-25 and 1.0.2 dated 2016-04-30

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More information about StressStrength at CRAN
Permanent link

New package tcgsaseq with initial version 1.0.0
Package: tcgsaseq
Type: Package
Title: Time-Course Gene Set Analysis for RNA-Seq Data
Version: 1.0.0
Date: 2016-04-30
Authors@R: c(person("Denis", "Agniel", role = c("aut"), email = "denis.agniel@gmail.com"), person("Boris P.", "Hejblum", role = c("aut", "cre"), email = "bhejblum@hsph.harvard.edu"))
Depends: R (>= 3.0.2)
Imports: CompQuadForm, ggplot2, GSA, stats, utils
Suggests: limma
Description: Gene set analysis of longitudinal RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights.
LazyData: true
License: GPL-2 | file LICENSE
BugReports: https://github.com/denisagniel/tcgsaseq/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-30 15:25:26 UTC; borishejblum
Author: Denis Agniel [aut], Boris P. Hejblum [aut, cre]
Maintainer: Boris P. Hejblum <bhejblum@hsph.harvard.edu>
Repository: CRAN
Date/Publication: 2016-05-01 00:32:29

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Package rmarkdown updated to version 0.9.6 with previous version 0.9.5 dated 2016-02-22

Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut, cre], Joe Cheng [aut], Yihui Xie [aut], Jonathan McPherson [aut], Winston Chang [aut], Jeff Allen [aut], Hadley Wickham [aut], Aron Atkins [aut], Rob Hyndman [aut], RStudio, Inc. [cph], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/rmd/h/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons)
Maintainer: JJ Allaire <jj@rstudio.com>

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More information about rmarkdown at CRAN
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Package phangorn updated to version 2.0.3 with previous version 2.0.2 dated 2016-01-22

Title: Phylogenetic Analysis in R
Description: Phylogenetic analysis in R: Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.
Author: Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Alastair Potts [aut]
Maintainer: Klaus Schliep <klaus.schliep@gmail.com>

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Package mpoly updated to version 1.0.1 with previous version 1.0.0 dated 2015-12-31

Title: Symbolic Computation and More with Multivariate Polynomials
Description: Symbolic computing with multivariate polynomials in R.
Author: David Kahle [aut, cre]
Maintainer: David Kahle <david.kahle@gmail.com>

Diff between mpoly versions 1.0.0 dated 2015-12-31 and 1.0.1 dated 2016-04-30

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New package hetmeta with initial version 0.1.0
Package: hetmeta
Type: Package
Title: Heterogeneity Measures in Meta-Analysis
Date: 2016-04-28
Version: 0.1.0
Author: Alessio Crippa
Maintainer: Alessio Crippa <alessio.crippa@ki.se>
Description: Assess the presence of statistical heterogeneity and quantify its impact in the context of meta-analysis. It includes test for heterogeneity as well as other statistical measures (R_b, I^2, R_I).
License: GPL-2
Depends: metafor
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-30 17:15:24 UTC; alecri
Repository: CRAN
Date/Publication: 2016-05-01 00:31:19

More information about hetmeta at CRAN
Permanent link

Package DiscreteLaplace updated to version 1.1.1 with previous version 1.1 dated 2015-07-27

Title: Discrete Laplace Distributions
Description: Probability mass function, distribution function, quantile function, random generation and estimation for the skew discrete Laplace distributions.
Author: Alessandro Barbiero <alessandro.barbiero@unimi.it>, Riccardo Inchingolo <dott.inchingolo_r@libero.it>
Maintainer: Alessandro Barbiero <alessandro.barbiero@unimi.it>

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Package DiscreteInverseWeibull updated to version 1.0.2 with previous version 1.0.1 dated 2014-11-25

Title: Discrete Inverse Weibull Distribution
Description: Probability mass function, distribution function, quantile function, random generation and parameter estimation for the discrete inverse Weibull distribution.
Author: Alessandro Barbiero, Riccardo Inchingolo, Mario Samigli
Maintainer: Alessandro Barbiero <alessandro.barbiero@unimi.it>

Diff between DiscreteInverseWeibull versions 1.0.1 dated 2014-11-25 and 1.0.2 dated 2016-04-30

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Package BWStest updated to version 0.2.0 with previous version 0.1.0 dated 2016-04-08

Title: Baumgartner Weiss Schindler Test of Equal Distributions
Description: Performs the 'Baumgartner-Weiss-Schindler' two-sample test of equal probability distributions.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>

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Package berryFunctions updated to version 1.10.0 with previous version 1.9.0 dated 2015-10-10

Title: Function Collection Related to Plotting and Hydrology
Description: Draw horizontal histograms, color scatterpoints by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, use the unit hydrograph in a linear storage cascade, convert lists to data.frames, fit multiple functions by regression (power, reciprocal, exponential, logarithmic, polynomial, rational).
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>

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 berryFunctions-1.10.0/berryFunctions/man/divPal.Rd                 |only
 berryFunctions-1.10.0/berryFunctions/man/dupes.Rd                  |  111 +-
 berryFunctions-1.10.0/berryFunctions/man/exp4p.Rd                  |  104 +-
 berryFunctions-1.10.0/berryFunctions/man/expReg.Rd                 |  106 +-
 berryFunctions-1.10.0/berryFunctions/man/funSource.Rd              |only
 berryFunctions-1.10.0/berryFunctions/man/funTinn.Rd                |   27 
 berryFunctions-1.10.0/berryFunctions/man/funnelPlot.Rd             |  265 +++---
 berryFunctions-1.10.0/berryFunctions/man/googleLink2pdf.Rd         |   34 
 berryFunctions-1.10.0/berryFunctions/man/groupHist.Rd              |   57 -
 berryFunctions-1.10.0/berryFunctions/man/headtail.Rd               |only
 berryFunctions-1.10.0/berryFunctions/man/horizHist.Rd              |   88 +-
 berryFunctions-1.10.0/berryFunctions/man/insertRows.Rd             |only
 berryFunctions-1.10.0/berryFunctions/man/instGit.Rd                |only
 berryFunctions-1.10.0/berryFunctions/man/l2df.Rd                   |   48 -
 berryFunctions-1.10.0/berryFunctions/man/lim0.Rd                   |   48 -
 berryFunctions-1.10.0/berryFunctions/man/linLogHist.Rd             |   96 +-
 berryFunctions-1.10.0/berryFunctions/man/linLogTrans.Rd            |  111 +-
 berryFunctions-1.10.0/berryFunctions/man/linReg.Rd                 |  107 +-
 berryFunctions-1.10.0/berryFunctions/man/locLine.Rd                |only
 berryFunctions-1.10.0/berryFunctions/man/logAxis.Rd                |  101 +-
 berryFunctions-1.10.0/berryFunctions/man/logHist.Rd                |only
 berryFunctions-1.10.0/berryFunctions/man/logSpaced.Rd              |   60 +
 berryFunctions-1.10.0/berryFunctions/man/logVals.Rd                |  132 +--
 berryFunctions-1.10.0/berryFunctions/man/lsMem.Rd                  |   43 
 berryFunctions-1.10.0/berryFunctions/man/lsc.Rd                    |  272 +++---
 berryFunctions-1.10.0/berryFunctions/man/mReg.Rd                   |  232 +++--
 berryFunctions-1.10.0/berryFunctions/man/monthAxis.Rd              |  111 ++
 berryFunctions-1.10.0/berryFunctions/man/monthLabs.Rd              |   79 +
 berryFunctions-1.10.0/berryFunctions/man/movAv.Rd                  |   49 -
 berryFunctions-1.10.0/berryFunctions/man/movAvLines.Rd             |   53 -
 berryFunctions-1.10.0/berryFunctions/man/na9.Rd                    |only
 berryFunctions-1.10.0/berryFunctions/man/nameSample.Rd             |  114 +-
 berryFunctions-1.10.0/berryFunctions/man/normPlot.Rd               |  106 +-
 berryFunctions-1.10.0/berryFunctions/man/nse.Rd                    |   39 
 berryFunctions-1.10.0/berryFunctions/man/owa.Rd                    |   65 -
 berryFunctions-1.10.0/berryFunctions/man/panelDim.Rd               |   58 -
 berryFunctions-1.10.0/berryFunctions/man/pastec.Rd                 |   38 
 berryFunctions-1.10.0/berryFunctions/man/pointZoom.Rd              |   70 +
 berryFunctions-1.10.0/berryFunctions/man/pretty2.Rd                |   47 -
 berryFunctions-1.10.0/berryFunctions/man/quantileBands.Rd          |   84 +
 berryFunctions-1.10.0/berryFunctions/man/quantileMean.Rd           |   57 -
 berryFunctions-1.10.0/berryFunctions/man/rainbow2.Rd               |   42 
 berryFunctions-1.10.0/berryFunctions/man/randomPoints.Rd           |  100 +-
 berryFunctions-1.10.0/berryFunctions/man/rcor.Rd                   |only
 berryFunctions-1.10.0/berryFunctions/man/removeSpace.Rd            |   65 -
 berryFunctions-1.10.0/berryFunctions/man/require2.Rd               |   36 
 berryFunctions-1.10.0/berryFunctions/man/rescale.Rd                |only
 berryFunctions-1.10.0/berryFunctions/man/rmse.Rd                   |   45 -
 berryFunctions-1.10.0/berryFunctions/man/rsquare.Rd                |   83 +
 berryFunctions-1.10.0/berryFunctions/man/seqPal.Rd                 |only
 berryFunctions-1.10.0/berryFunctions/man/seqR.Rd                   |   41 
 berryFunctions-1.10.0/berryFunctions/man/showPal.Rd                |only
 berryFunctions-1.10.0/berryFunctions/man/smallPlot.Rd              |   65 +
 berryFunctions-1.10.0/berryFunctions/man/smoothLines.Rd            |   47 -
 berryFunctions-1.10.0/berryFunctions/man/sortDF.Rd                 |   39 
 berryFunctions-1.10.0/berryFunctions/man/superPos.Rd               |  182 ++--
 berryFunctions-1.10.0/berryFunctions/man/tableColVal.Rd            |  133 +--
 berryFunctions-1.10.0/berryFunctions/man/textField.Rd              |  237 +++--
 berryFunctions-1.10.0/berryFunctions/man/timer.Rd                  |   47 -
 berryFunctions-1.10.0/berryFunctions/man/triangleArea.Rd           |   36 
 berryFunctions-1.10.0/berryFunctions/man/unitHydrograph.Rd         |   40 
 berryFunctions-1.10.0/berryFunctions/man/yearSample.Rd             |   37 
 berryFunctions-1.10.0/berryFunctions/vignettes                     |only
 berryFunctions-1.9.0/berryFunctions/R/addAlpha.r                   |only
 berryFunctions-1.9.0/berryFunctions/R/addRows.r                    |only
 berryFunctions-1.9.0/berryFunctions/R/climateGraph.r               |only
 berryFunctions-1.9.0/berryFunctions/R/cls.r                        |only
 berryFunctions-1.9.0/berryFunctions/R/combineFiles.r               |only
 berryFunctions-1.9.0/berryFunctions/R/createDoc.r                  |only
 berryFunctions-1.9.0/berryFunctions/R/exp4p.r                      |only
 berryFunctions-1.9.0/berryFunctions/R/funnelPlot.r                 |only
 berryFunctions-1.9.0/berryFunctions/R/l2df.r                       |only
 berryFunctions-1.9.0/berryFunctions/R/lim0.r                       |only
 berryFunctions-1.9.0/berryFunctions/R/lsc.r                        |only
 berryFunctions-1.9.0/berryFunctions/R/mReg.r                       |only
 berryFunctions-1.9.0/berryFunctions/R/nse.r                        |only
 berryFunctions-1.9.0/berryFunctions/R/owa.r                        |only
 berryFunctions-1.9.0/berryFunctions/R/require2.r                   |only
 berryFunctions-1.9.0/berryFunctions/R/rmse.r                       |only
 berryFunctions-1.9.0/berryFunctions/R/rsquare.r                    |only
 berryFunctions-1.9.0/berryFunctions/R/seqR.r                       |only
 berryFunctions-1.9.0/berryFunctions/R/superPos.r                   |only
 berryFunctions-1.9.0/berryFunctions/R/tableColVal.r                |only
 berryFunctions-1.9.0/berryFunctions/R/unitHydrograph.r             |only
 203 files changed, 7476 insertions(+), 3714 deletions(-)

More information about berryFunctions at CRAN
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