Title: Effects under Linear, Logistic and Poisson Regression Models
with Transformed Variables
Description: Computation of effects under linear, logistic and Poisson regression models with transformed variables. Logarithm and power transformations are allowed. Effects can be displayed both numerically and graphically in both the original and the transformed space of the variables.
Author: Jose Barrera-Gomez and Xavier Basagana
Maintainer: Jose Barrera-Gomez <jbarrera@creal.cat>
Diff between tlm versions 0.1.3 dated 2014-12-05 and 0.1.4 dated 2016-05-04
tlm-0.1.3/tlm/vignettes/Sweave2.sty |only tlm-0.1.4/tlm/DESCRIPTION | 10 tlm-0.1.4/tlm/MD5 | 35 +- tlm-0.1.4/tlm/NAMESPACE | 1 tlm-0.1.4/tlm/NEWS | 12 tlm-0.1.4/tlm/R/tlm.R | 2 tlm-0.1.4/tlm/build/vignette.rds |binary tlm-0.1.4/tlm/inst/doc/tlm-manual.pdf |binary tlm-0.1.4/tlm/inst/doc/tlm.R | 420 ++++++++-------------------------- tlm-0.1.4/tlm/inst/doc/tlm.Rnw | 46 +-- tlm-0.1.4/tlm/inst/doc/tlm.pdf |binary tlm-0.1.4/tlm/man/MY.Rd | 5 tlm-0.1.4/tlm/man/effect.Rd | 5 tlm-0.1.4/tlm/man/effectInfo.Rd | 5 tlm-0.1.4/tlm/man/summary.tlm.Rd | 5 tlm-0.1.4/tlm/man/tlm-package.Rd | 10 tlm-0.1.4/tlm/man/tlm.Rd | 5 tlm-0.1.4/tlm/vignettes/authblk.sty |only tlm-0.1.4/tlm/vignettes/framed.sty |only tlm-0.1.4/tlm/vignettes/tlm.Rnw | 46 +-- 20 files changed, 195 insertions(+), 412 deletions(-)
Title: Estimation and Use of the Quantile-Based Skew Logistic
Distribution
Description: The skew logistic distribution is a quantile-defined generalisation
of the logistic distribution (van Staden and King 2015). Provides random
numbers, quantiles, probabilities, densities and density quantiles for the distribution.
It provides Quantile-Quantile plots and method of L-Moments estimation
(including asymptotic standard errors) for the distribution.
Author: Robert King <Robert.King@newcastle.edu.au>, Paul van Staden <paul.vanstaden@up.ac.za>
Maintainer: Robert King <Robert.King@newcastle.edu.au>
Diff between sld versions 0.3 dated 2014-10-23 and 0.3.2 dated 2016-05-04
Changelog | 8 +++++++- DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 3 +++ R/fit.R | 2 +- TODO | 1 - man/PCB.Rd | 4 +++- man/fit.Rd | 2 +- man/qbSLD.Rd | 2 +- 9 files changed, 28 insertions(+), 18 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 4.3.18 dated 2016-04-21 and 4.3.19 dated 2016-05-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/tbb/src/tbb/tools_api/ittnotify_static.c | 9 ++++----- 3 files changed, 9 insertions(+), 10 deletions(-)
Title: Multivariate Methods Based on the Oja Median and Related
Concepts
Description: Functions to calculate the Oja median, Oja signs and ranks and methods based upon them.
Author: Daniel Fischer, Karl Mosler, Jyrki Möttönen, Klaus Nordhausen, Oleksii Pokotylo, Daniel Vogel
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Diff between OjaNP versions 0.9-8 dated 2014-09-11 and 0.9-9 dated 2016-05-04
DESCRIPTION | 20 +- MD5 | 83 ++++++------ NAMESPACE | 23 +-- R/OjaMedian.R | 136 ++++++++++--------- R/ojaMedian.control.R | 4 R/ojaMedianExB.R |only R/ojaRCM.R | 16 +- R/ojaSCM.R | 16 +- inst/ChangeLog | 62 ++++---- man/OjaNP-package.Rd | 58 ++++---- man/biochem.Rd | 2 man/hyperplane.Rd | 134 +++++++++---------- man/oja1sampleTest.Rd | 132 +++++++++---------- man/ojaCsampleTest.Rd | 242 +++++++++++++++++----------------- man/ojaMedian.Rd | 182 ++++++++++++++------------ man/ojaMedianControl.Rd | 7 - man/ojaMedianFn.Rd | 72 +++++----- man/ojaRCM.Rd | 187 +++++++++++++-------------- man/ojaRank.Rd | 252 ++++++++++++++++++------------------ man/ojaSCM.Rd | 256 ++++++++++++++++++------------------- man/ojaSign.Rd | 332 ++++++++++++++++++++++++------------------------ man/ojaSignedRank.Rd | 214 +++++++++++++++--------------- src/algorithms.cpp | 90 +++++++++---- src/bounded_search.cpp |only src/data.cpp | 10 + src/data.h | 5 src/global.h | 22 +++ src/hyperplane.cpp | 77 +++++++++-- src/hyperplane.h | 10 + src/index.cpp | 57 +++++++- src/index.h | 30 ++++ src/interface.cpp | 21 ++- src/interface.h |only src/line.h | 2 src/matrix.h | 36 ++++- src/matrix_wrapper.h | 20 +- src/misc.cpp | 13 - src/misc.h | 7 - src/oja_data.cpp | 79 +++++++++++ src/oja_geometry.cpp | 264 ++++++++++++++++++++++++++++++++++++-- src/oja_geometry.h | 41 +++++ src/random.cpp | 17 ++ src/simplex.cpp | 19 ++ src/simplex.h | 1 44 files changed, 1966 insertions(+), 1285 deletions(-)
Title: Tools for using Network Reporting Estimators
Description: Functions useful
for producing estimates from data that were collected using network
reporting techniques like network scale-up, indirect sampling,
network reporting, and sibling history.
Author: Dennis M. Feehan [aut, cre],
Matthew J. Salganik [ths]
Maintainer: Dennis M. Feehan <feehan@berkeley.edu>
Diff between networkreporting versions 0.0.1 dated 2014-05-06 and 0.1.0 dated 2016-05-04
networkreporting-0.0.1/networkreporting/data/goc.RData |only networkreporting-0.0.1/networkreporting/data/hhsurvey.RData |only networkreporting-0.0.1/networkreporting/data/mu284.RData |only networkreporting-0.0.1/networkreporting/data/toynetworks.RData |only networkreporting-0.0.1/networkreporting/data/toynrnetworks.RData |only networkreporting-0.0.1/networkreporting/inst/tests |only networkreporting-0.0.1/networkreporting/man/MU284.Rd |only networkreporting-0.0.1/networkreporting/man/MU284.boot.res.summ.Rd |only networkreporting-0.0.1/networkreporting/man/MU284.estimator.fn.Rd |only networkreporting-0.0.1/networkreporting/man/MU284.surveys.Rd |only networkreporting-0.0.1/networkreporting/man/bootstrap.estimates.Rd |only networkreporting-0.0.1/networkreporting/man/chain.data.Rd |only networkreporting-0.0.1/networkreporting/man/chain.size.Rd |only networkreporting-0.0.1/networkreporting/man/chain.vals.Rd |only networkreporting-0.0.1/networkreporting/man/compare.mean.ties.truth.Rd |only networkreporting-0.0.1/networkreporting/man/estimate.degree.distns.Rd |only networkreporting-0.0.1/networkreporting/man/estimate.mixing.Rd |only networkreporting-0.0.1/networkreporting/man/get.fn.Rd |only networkreporting-0.0.1/networkreporting/man/get.var.Rd |only networkreporting-0.0.1/networkreporting/man/get.weights.Rd |only networkreporting-0.0.1/networkreporting/man/hm.q.Rd |only networkreporting-0.0.1/networkreporting/man/is.child.ct.Rd |only networkreporting-0.0.1/networkreporting/man/knownpop.dat.Rd |only networkreporting-0.0.1/networkreporting/man/make.chain.Rd |only networkreporting-0.0.1/networkreporting/man/max.depth.Rd |only networkreporting-0.0.1/networkreporting/man/mc.sim.Rd |only networkreporting-0.0.1/networkreporting/man/parent.data.Rd |only networkreporting-0.0.1/networkreporting/man/parse_design.Rd |only networkreporting-0.0.1/networkreporting/man/rds.boot.draw.chain.Rd |only networkreporting-0.0.1/networkreporting/man/rds.chain.boot.draws.Rd |only networkreporting-0.0.1/networkreporting/man/rds.mc.boot.draws.Rd |only networkreporting-0.0.1/networkreporting/man/rescaled.bootstrap.sample.Rd |only networkreporting-0.0.1/networkreporting/man/srs.bootstrap.sample.Rd |only networkreporting-0.0.1/networkreporting/man/summation.degree.estimator.Rd |only networkreporting-0.0.1/networkreporting/man/survey.data.Rd |only networkreporting-0.0.1/networkreporting/man/target.q.Rd |only networkreporting-0.0.1/networkreporting/man/tn1.Rd |only networkreporting-0.0.1/networkreporting/man/tn2.Rd |only networkreporting-0.0.1/networkreporting/man/tn3.Rd |only networkreporting-0.0.1/networkreporting/man/tn4.Rd |only networkreporting-0.0.1/networkreporting/man/tnr1.Rd |only networkreporting-0.0.1/networkreporting/man/tnr2.Rd |only networkreporting-0.0.1/networkreporting/man/tnr3.Rd |only networkreporting-0.0.1/networkreporting/man/tot.pop.size.Rd |only networkreporting-0.0.1/networkreporting/man/toy.networks.Rd |only networkreporting-0.0.1/networkreporting/man/toy.nr.networks.Rd |only networkreporting-0.0.1/networkreporting/man/traits.to.string.Rd |only networkreporting-0.0.1/networkreporting/man/unparse.trait.Rd |only networkreporting-0.0.1/networkreporting/man/vcat.Rd |only networkreporting-0.0.1/networkreporting/man/weighted.mean.Rd |only networkreporting-0.0.1/networkreporting/tests/test_all.r |only networkreporting-0.0.1/networkreporting/vignettes/getting_started.Rmd |only networkreporting-0.1.0/networkreporting/DESCRIPTION | 36 networkreporting-0.1.0/networkreporting/LICENSE | 2 networkreporting-0.1.0/networkreporting/MD5 | 160 -- networkreporting-0.1.0/networkreporting/NAMESPACE | 36 networkreporting-0.1.0/networkreporting/NEWS | 11 networkreporting-0.1.0/networkreporting/R/RcppExports.R |only networkreporting-0.1.0/networkreporting/R/data.R |only networkreporting-0.1.0/networkreporting/R/helper_functions.r | 308 ---- networkreporting-0.1.0/networkreporting/R/indirect_sampling.r | 17 networkreporting-0.1.0/networkreporting/R/known_population.r | 222 +++ networkreporting-0.1.0/networkreporting/R/network_survival.r |only networkreporting-0.1.0/networkreporting/R/networkreporting_package.r | 226 --- networkreporting-0.1.0/networkreporting/R/rds.r | 467 ------- networkreporting-0.1.0/networkreporting/R/report_aggregator.r |only networkreporting-0.1.0/networkreporting/R/scale_up.r | 116 - networkreporting-0.1.0/networkreporting/R/summation.r | 17 networkreporting-0.1.0/networkreporting/R/variance_estimators.r | 555 -------- networkreporting-0.1.0/networkreporting/README.md | 62 networkreporting-0.1.0/networkreporting/build/vignette.rds |binary networkreporting-0.1.0/networkreporting/data/example.knownpop.dat.rda |only networkreporting-0.1.0/networkreporting/data/example.survey.rda |only networkreporting-0.1.0/networkreporting/inst/CITATION | 2 networkreporting-0.1.0/networkreporting/inst/doc/generalized_scaleup.R |only networkreporting-0.1.0/networkreporting/inst/doc/generalized_scaleup.Rmd |only networkreporting-0.1.0/networkreporting/inst/doc/generalized_scaleup.html |only networkreporting-0.1.0/networkreporting/inst/doc/getting_started.R | 4 networkreporting-0.1.0/networkreporting/inst/doc/getting_started.Rmd | 32 networkreporting-0.1.0/networkreporting/inst/doc/getting_started.html | 130 + networkreporting-0.1.0/networkreporting/inst/doc/network_scaleup.R | 31 networkreporting-0.1.0/networkreporting/inst/doc/network_scaleup.Rmd | 2 networkreporting-0.1.0/networkreporting/inst/doc/network_scaleup.html | 666 ++++------ networkreporting-0.1.0/networkreporting/inst/doc/rds.R |only networkreporting-0.1.0/networkreporting/inst/doc/rds.Rmd |only networkreporting-0.1.0/networkreporting/inst/doc/rds.html |only networkreporting-0.1.0/networkreporting/inst/doc/toy_networks.R |only networkreporting-0.1.0/networkreporting/inst/doc/toy_networks.Rmd |only networkreporting-0.1.0/networkreporting/inst/doc/toy_networks.html |only networkreporting-0.1.0/networkreporting/man/add.kp.Rd | 40 networkreporting-0.1.0/networkreporting/man/df.to.kpvec.Rd | 46 networkreporting-0.1.0/networkreporting/man/estimate.error.Rd | 20 networkreporting-0.1.0/networkreporting/man/example.knownpop.dat.Rd |only networkreporting-0.1.0/networkreporting/man/example.survey.Rd | 48 networkreporting-0.1.0/networkreporting/man/gwsm.estimator.Rd | 20 networkreporting-0.1.0/networkreporting/man/killworth.se.Rd | 28 networkreporting-0.1.0/networkreporting/man/kp.degree.estimator.Rd | 73 - networkreporting-0.1.0/networkreporting/man/kp.estimator.Rd |only networkreporting-0.1.0/networkreporting/man/kp.individual.estimator.Rd |only networkreporting-0.1.0/networkreporting/man/multiplicity.estimator.Rd | 20 networkreporting-0.1.0/networkreporting/man/network.survival.estimator.Rd |only networkreporting-0.1.0/networkreporting/man/networkreporting.Rd | 11 networkreporting-0.1.0/networkreporting/man/nsum.estimator.Rd | 87 - networkreporting-0.1.0/networkreporting/man/nsum.internal.validation.Rd | 149 +- networkreporting-0.1.0/networkreporting/man/parse.total.popn.size.Rd | 41 networkreporting-0.1.0/networkreporting/man/plot_meanties_truth.Rd |only networkreporting-0.1.0/networkreporting/man/rdsII.estimator.Rd | 43 networkreporting-0.1.0/networkreporting/man/report.aggregator.Rd |only networkreporting-0.1.0/networkreporting/man/summation.estimator.Rd |only networkreporting-0.1.0/networkreporting/man/topcode.data.Rd | 28 networkreporting-0.1.0/networkreporting/man/topcode.var.Rd | 26 networkreporting-0.1.0/networkreporting/man/total.degree.estimator.Rd | 61 networkreporting-0.1.0/networkreporting/tests/test_all.R |only networkreporting-0.1.0/networkreporting/tests/testthat |only networkreporting-0.1.0/networkreporting/vignettes/network_scaleup.Rmd | 170 +- 115 files changed, 1369 insertions(+), 2644 deletions(-)
More information about networkreporting at CRAN
Permanent link
Title: Models for Analysing Moult in Birds
Description: Functions to estimate start and duration of moult from moult
data, based on models developed in Underhill
and Zucchini (1988, 1990).
Author: Birgit Erni <birgit.erni@uct.ac.za>. Based on models
developed by Underhill and Zucchini (1988, 1990).
Maintainer: Birgit Erni <birgit.erni@uct.ac.za>
Diff between moult versions 1.4 dated 2014-10-08 and 2.0.0 dated 2016-05-04
DESCRIPTION | 15 - MD5 | 14 - NAMESPACE | 2 NEWS | 8 R/moult.R | 631 +++++++++++++++++++++++++++++++-------------------- build/vignette.rds |binary man/moult-package.Rd | 66 ++--- man/moult.Rd | 247 ++++++++++--------- 8 files changed, 571 insertions(+), 412 deletions(-)
Title: Short Term Forecasting via GMDH-Type Neural Network Algorithms
Description: Group method of data handling (GMDH) - type neural network algorithm is the heuristic self-organization method for modelling the complex systems. In this package, GMDH-type neural network algorithms are applied to make short term forecasting for a univariate time series.
Author: Osman Dag, Ceylan Yozgatligil
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between GMDH versions 1.4 dated 2016-04-22 and 1.5 dated 2016-05-04
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 3 +-- R/fcast.R | 14 ++++++++------ man/GMDH.Rd | 4 ++-- man/fcast.Rd | 10 +++++----- 6 files changed, 27 insertions(+), 26 deletions(-)
Title: Stereological Unfolding for Spheroidal Particles
Description: Stereological unfolding as implemented in this package consists in
the estimation of the joint size-shape-orientation distribution of spheroidal
shaped particles based on the same measured quantities of corresponding planar
section profiles. A single trivariate discretized version of the (stereological)
integral equation in the case of prolate and oblate spheroids is solved
numerically by the EM algorithm. The estimation of diameter distribution of
spheres from planar sections (Wicksell's corpuscle problem) is also implemented.
Further, the package provides routines for the simulation of a Poisson germ-
grain process with either spheroids or spheres as grains together with functions
for planar sections. For the purpose of exact simulation a bivariate size-shape
distribution is implemented.
Author: Markus Baaske [aut, cre], Felix Ballani [ctb]
Maintainer: Markus Baaske <markus.baaske@math.tu-freiberg.de>
Diff between unfoldr versions 0.5 dated 2016-05-01 and 0.5.1 dated 2016-05-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Vector.h | 14 ++++++++++---- 3 files changed, 15 insertions(+), 9 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH
pubkey parsers. Supports RSA, DSA and NIST curves P-256, P-384 and P-521.
Cryptographic signatures can either be created and verified manually or via x509
certificates. AES block cipher is used in CBC mode for symmetric encryption; RSA
for asymmetric (public key) encryption. High-level envelope functions combine
RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure
random number generator, and 'bignum' math methods for manually performing
crypto calculations on large multibyte integers.
Author: Jeroen Ooms [cre, aut],
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between openssl versions 0.9.2 dated 2016-02-26 and 0.9.3 dated 2016-05-04
DESCRIPTION | 10 ++-- MD5 | 23 +++++---- NAMESPACE | 2 NEWS | 5 ++ R/diffie.R |only R/read.R | 4 - build/vignette.rds |binary configure | 9 --- inst/doc/bignum.html | 102 +++++++++++++++++++++++++++++++++---------- inst/doc/crypto_hashing.html | 83 +++++++++++++++++++++++++++++----- inst/doc/secure_rng.html | 93 +++++++++++++++++++++++++++++++-------- man/ec_dh.Rd |only src/cert.c | 4 - src/diffie.c |only 14 files changed, 255 insertions(+), 80 deletions(-)
Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetTDData versions 1.2 dated 2016-04-29 and 1.2.1 dated 2016-05-04
DESCRIPTION | 7 +++---- MD5 | 14 +++++++------- NEWS.md | 23 +++++++++++++---------- R/gtdd_read_TD_files.R | 5 ++++- inst/doc/gtdd-vignette.R | 8 ++++---- inst/doc/gtdd-vignette.Rmd | 8 ++++---- inst/doc/gtdd-vignette.html | 27 +++++++++++++-------------- vignettes/gtdd-vignette.Rmd | 8 ++++---- 8 files changed, 52 insertions(+), 48 deletions(-)
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices,
based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre],
David Meyer [aut],
Christian Buchta [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between slam versions 0.1-32 dated 2014-04-02 and 0.1-34 dated 2016-05-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 15 +++++++++++++++ R/matrix.R | 16 ++++++++++------ 4 files changed, 32 insertions(+), 13 deletions(-)
Title: Build Random Multiple Choice Exams
Description: Using as input a 'LaTeX' file with a multiple choice exam, this package will produce random versions of the same exam.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between RndTexExams versions 1.2 dated 2016-04-26 and 1.3 dated 2016-05-04
RndTexExams-1.2/RndTexExams/tests/testthat/MyRandomTest_1.pdf |only RndTexExams-1.2/RndTexExams/tests/testthat/MyRandomTest_2.pdf |only RndTexExams-1.2/RndTexExams/tests/testthat/MyRandomTest_3.pdf |only RndTexExams-1.2/RndTexExams/tests/testthat/MyRandomTest_4.pdf |only RndTexExams-1.2/RndTexExams/tests/testthat/MyRandomTest_5.pdf |only RndTexExams-1.2/RndTexExams/vignettes/Answer_Matrix_csv |only RndTexExams-1.3/RndTexExams/DESCRIPTION | 12 - RndTexExams-1.3/RndTexExams/MD5 | 40 ++-- RndTexExams-1.3/RndTexExams/NAMESPACE | 2 RndTexExams-1.3/RndTexExams/NEWS.md | 7 RndTexExams-1.3/RndTexExams/R/rte_Utils.R | 91 +++++----- RndTexExams-1.3/RndTexExams/R/rte_build_rdn_test.R | 19 +- RndTexExams-1.3/RndTexExams/R/rte_grade_exams.R | 60 ++---- RndTexExams-1.3/RndTexExams/R/rte_test_cheating.R |only RndTexExams-1.3/RndTexExams/build/vignette.rds |binary RndTexExams-1.3/RndTexExams/inst/doc/rte-vignette.R | 37 ---- RndTexExams-1.3/RndTexExams/inst/doc/rte-vignette.Rmd | 60 ++---- RndTexExams-1.3/RndTexExams/inst/doc/rte-vignette.html | 85 ++++----- RndTexExams-1.3/RndTexExams/inst/doc/rte-vignette2.R |only RndTexExams-1.3/RndTexExams/inst/doc/rte-vignette2.Rmd |only RndTexExams-1.3/RndTexExams/inst/doc/rte-vignette2.html |only RndTexExams-1.3/RndTexExams/man/rte.build.rdn.test.Rd | 10 - RndTexExams-1.3/RndTexExams/man/rte.compile.latex.Rd | 5 RndTexExams-1.3/RndTexExams/man/rte.grade.exams.Rd | 18 - RndTexExams-1.3/RndTexExams/man/rte.test.cheating.Rd |only RndTexExams-1.3/RndTexExams/vignettes/rte-vignette.Rmd | 60 ++---- RndTexExams-1.3/RndTexExams/vignettes/rte-vignette2.Rmd |only 27 files changed, 225 insertions(+), 281 deletions(-)
Title: Make 'ggplot2' Graphics Interactive Using 'htmlwidgets'
Description: Create interactive 'ggplot2' graphics that are usable in the 'RStudio'
viewer pane, in 'R Markdown' documents and in 'Shiny' apps.
Author: David Gohel [aut, cre],
Mike Bostock [cph] (d3.js)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.2.0 dated 2016-03-03 and 0.3.0 dated 2016-05-04
ggiraph-0.2.0/ggiraph/inst/shiny/ggplot.md |only ggiraph-0.2.0/ggiraph/inst/shiny/server.md |only ggiraph-0.2.0/ggiraph/inst/shiny/ui.md |only ggiraph-0.3.0/ggiraph/DESCRIPTION | 8 - ggiraph-0.3.0/ggiraph/MD5 | 33 ++---- ggiraph-0.3.0/ggiraph/NEWS | 7 + ggiraph-0.3.0/ggiraph/R/ggiraph.R | 42 +++++--- ggiraph-0.3.0/ggiraph/build/vignette.rds |binary ggiraph-0.3.0/ggiraph/inst/doc/custom_rendering.Rmd | 2 ggiraph-0.3.0/ggiraph/inst/doc/custom_rendering.html | 24 ++-- ggiraph-0.3.0/ggiraph/inst/doc/ggiraph.R | 50 ++++++--- ggiraph-0.3.0/ggiraph/inst/doc/ggiraph.Rmd | 55 ++++++---- ggiraph-0.3.0/ggiraph/inst/doc/ggiraph.html | 48 ++++----- ggiraph-0.3.0/ggiraph/inst/htmlwidgets/ggiraph.js | 99 +++++++++++++++++-- ggiraph-0.3.0/ggiraph/inst/shiny/server.R | 45 ++++---- ggiraph-0.3.0/ggiraph/inst/shiny/ui.R | 65 ++---------- ggiraph-0.3.0/ggiraph/man/ggiraph.Rd | 16 ++- ggiraph-0.3.0/ggiraph/vignettes/custom_rendering.Rmd | 2 ggiraph-0.3.0/ggiraph/vignettes/ggiraph.Rmd | 55 ++++++---- 19 files changed, 333 insertions(+), 218 deletions(-)
Title: Perform Evolutionary Transcriptomics Studies
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes. The aim of this tool is to provide a transcriptome analysis environment for answering questions regarding the evolution of biological processes.
Author: Hajk-Georg Drost
Maintainer: Hajk-Georg Drost <hgd23@cam.ac.uk>
Diff between myTAI versions 0.3.0 dated 2015-07-30 and 0.4.0 dated 2016-05-04
DESCRIPTION | 21 - MD5 | 161 ++++---- NAMESPACE | 6 NEWS.md |only R/GroupDiffs.R |only R/MatchMap.R | 2 R/PlotBarRE.R | 14 R/PlotCategoryExpr.R | 30 + R/PlotCorrelation.R | 34 + R/PlotDistribution.R | 68 +-- R/PlotEnrichment.R | 4 R/PlotGroupDiffs.R |only R/PlotSelectedAgeDistr.R |only R/is.ExpressionSet.R | 2 R/taxid.R |only R/taxonomy.R | 2 R/tf.R | 10 README.md | 63 ++- build/vignette.rds |binary inst/CITATION |only inst/doc/Advanced.R | 203 ++++++----- inst/doc/Advanced.Rmd | 83 ++++ inst/doc/Advanced.html | 177 +++++++-- inst/doc/Enrichment.Rmd | 2 inst/doc/Enrichment.html | 135 ++++--- inst/doc/Expression.Rmd | 2 inst/doc/Expression.html | 188 +++++----- inst/doc/Intermediate.Rmd | 8 inst/doc/Intermediate.html | 227 ++++++------ inst/doc/Introduction.R | 45 -- inst/doc/Introduction.Rmd | 441 ++++-------------------- inst/doc/Introduction.html | 609 ++++++++++------------------------ inst/doc/Taxonomy.html | 83 ++-- man/CollapseReplicates.Rd | 18 - man/CombinatorialSignificance.Rd | 31 + man/DiffGenes.Rd | 14 man/DivergenceExpressionSetExample.Rd | 6 man/EarlyConservationTest.Rd | 46 +- man/EnrichmentTest.Rd | 6 man/Expressed.Rd | 44 +- man/FlatLineTest.Rd | 30 - man/GroupDiffs.Rd |only man/MatchMap.Rd | 63 ++- man/PhyloExpressionSetExample.Rd | 4 man/PlotBarRE.Rd | 24 - man/PlotCategoryExpr.Rd | 21 - man/PlotContribution.Rd | 10 man/PlotCorrelation.Rd | 32 - man/PlotDistribution.Rd | 33 + man/PlotEnrichment.Rd | 52 +- man/PlotGeneSet.Rd | 19 - man/PlotGroupDiffs.Rd |only man/PlotMeans.Rd | 23 - man/PlotPattern.Rd | 99 ++--- man/PlotRE.Rd | 44 +- man/PlotReplicateQuality.Rd | 8 man/PlotSelectedAgeDistr.Rd |only man/RE.Rd | 9 man/REMatrix.Rd | 13 man/ReductiveHourglassTest.Rd | 47 +- man/SelectGeneSet.Rd | 9 man/TAI.Rd | 10 man/TDI.Rd | 5 man/age.apply.Rd | 16 man/bar.colors.Rd | 3 man/bootMatrix.Rd | 7 man/ecScore.Rd | 13 man/geom.mean.Rd | 3 man/harm.mean.Rd | 3 man/is.ExpressionSet.Rd | 4 man/omitMatrix.Rd | 11 man/pMatrix.Rd | 14 man/pStrata.Rd | 5 man/pTAI.Rd | 4 man/pTDI.Rd | 4 man/rhScore.Rd | 49 +- man/taxid.Rd |only man/taxonomy.Rd | 8 man/tf.Rd | 34 + src/rcpp_funcs.cpp | 4 tests/testthat/test-DiffGenes.R | 10 tests/testthat/test-taxid.R |only vignettes/Advanced.Rmd | 83 ++++ vignettes/Enrichment.Rmd | 2 vignettes/Expression.Rmd | 2 vignettes/Intermediate.Rmd | 8 vignettes/Introduction.Rmd | 441 ++++-------------------- 87 files changed, 1875 insertions(+), 2193 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre],
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-4 dated 2016-02-17 and 1.4-5 dated 2016-05-04
DESCRIPTION | 8 +-- MD5 | 24 +++++------ R/expressions.R | 25 +----------- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary inst/NEWS | 27 ++++++++----- inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary tests/Examples/multcomp-Ex.Rout.save | 64 ------------------------------- tests/bugfix.R | 37 ++++++++++++++++++ tests/bugfix.Rout.save | 71 ++++++++++++++++++++++++++++++++--- 13 files changed, 142 insertions(+), 114 deletions(-)
Title: High-Dimensional Repeated Measures
Description: Inference for high-dimensional repeated measures in factorial designs.
Author: Martin Happ [aut, cre], Harrar W. Solomon [aut], Arne C. Bathke [aut]
Maintainer: Martin Happ <martin.happ@aon.at>
Diff between HRM versions 0.1 dated 2015-08-11 and 0.3.5 dated 2016-05-04
HRM-0.1/HRM/R/example_HAB.R |only HRM-0.1/HRM/R/example_HA_B.R |only HRM-0.1/HRM/R/example_HAu.R |only HRM-0.1/HRM/R/example_HAw.R |only HRM-0.1/HRM/R/example_HB.R |only HRM-0.1/HRM/R/example_all.R |only HRM-0.3.5/HRM/DESCRIPTION | 15 HRM-0.3.5/HRM/MD5 | 92 ++++- HRM-0.3.5/HRM/NAMESPACE | 7 HRM-0.3.5/HRM/R/Repeated.R | 411 ++++++++++++++++++------- HRM-0.3.5/HRM/R/f3_A.R |only HRM-0.3.5/HRM/R/f3_AB.R |only HRM-0.3.5/HRM/R/f3_ABC.R |only HRM-0.3.5/HRM/R/f3_AC.R |only HRM-0.3.5/HRM/R/f3_B.R |only HRM-0.3.5/HRM/R/f3_BC.R |only HRM-0.3.5/HRM/R/f3_C.R |only HRM-0.3.5/HRM/R/f3_b_A.R |only HRM-0.3.5/HRM/R/f3_b_A2.R |only HRM-0.3.5/HRM/R/f3_b_A2B.R |only HRM-0.3.5/HRM/R/f3_b_AA2.R |only HRM-0.3.5/HRM/R/f3_b_AA2B.R |only HRM-0.3.5/HRM/R/f3_b_AA2C.R |only HRM-0.3.5/HRM/R/f3_b_AB.R |only HRM-0.3.5/HRM/R/f3_b_B.R |only HRM-0.3.5/HRM/R/f4_A.R |only HRM-0.3.5/HRM/R/f4_A2.R |only HRM-0.3.5/HRM/R/f4_A2B.R |only HRM-0.3.5/HRM/R/f4_A2BC.R |only HRM-0.3.5/HRM/R/f4_A2C.R |only HRM-0.3.5/HRM/R/f4_AA2.R |only HRM-0.3.5/HRM/R/f4_AA2B.R |only HRM-0.3.5/HRM/R/f4_AA2BC.R |only HRM-0.3.5/HRM/R/f4_AB.R |only HRM-0.3.5/HRM/R/f4_ABC.R |only HRM-0.3.5/HRM/R/f4_AC.R |only HRM-0.3.5/HRM/R/f4_B.R |only HRM-0.3.5/HRM/R/f4_BC.R |only HRM-0.3.5/HRM/R/f4_C.R |only HRM-0.3.5/HRM/R/plot.R |only HRM-0.3.5/HRM/data |only HRM-0.3.5/HRM/man/EEG.Rd |only HRM-0.3.5/HRM/man/HRM.Rd | 8 HRM-0.3.5/HRM/man/hrm.1w.2f.A.Rd |only HRM-0.3.5/HRM/man/hrm.1w.2f.AB.Rd |only HRM-0.3.5/HRM/man/hrm.1w.2f.ABC.Rd |only HRM-0.3.5/HRM/man/hrm.1w.2f.AC.Rd |only HRM-0.3.5/HRM/man/hrm.1w.2f.B.Rd |only HRM-0.3.5/HRM/man/hrm.1w.2f.BC.Rd |only HRM-0.3.5/HRM/man/hrm.1w.2f.C.Rd |only HRM-0.3.5/HRM/man/hrm.2w.1f.A.Rd |only HRM-0.3.5/HRM/man/hrm.2w.1f.A2.Rd |only HRM-0.3.5/HRM/man/hrm.2w.1f.A2B.Rd |only HRM-0.3.5/HRM/man/hrm.2w.1f.AA2.Rd |only HRM-0.3.5/HRM/man/hrm.2w.1f.AA2B.Rd |only HRM-0.3.5/HRM/man/hrm.2w.1f.AB.Rd |only HRM-0.3.5/HRM/man/hrm.2w.1f.B.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.A.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.A2.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.A2B.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.A2BC.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.A2C.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.AA2.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.AA2B.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.AA2BC.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.AA2C.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.AB.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.ABC.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.AC.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.B.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.BC.Rd |only HRM-0.3.5/HRM/man/hrm.2w.2f.C.Rd |only HRM-0.3.5/HRM/man/hrm.A.unweighted.Rd | 22 - HRM-0.3.5/HRM/man/hrm.A.weighted.Rd | 22 - HRM-0.3.5/HRM/man/hrm.AB.Rd | 22 - HRM-0.3.5/HRM/man/hrm.A_B.Rd | 22 - HRM-0.3.5/HRM/man/hrm.B.Rd | 22 - HRM-0.3.5/HRM/man/hrm.plot.Rd |only HRM-0.3.5/HRM/man/hrm.test.2.Rd |only HRM-0.3.5/HRM/man/hrm.test.2.between.Rd |only HRM-0.3.5/HRM/man/hrm.test.2.between.within.Rd |only HRM-0.3.5/HRM/man/hrm.test.2.within.Rd |only HRM-0.3.5/HRM/man/hrm.test.Rd | 2 83 files changed, 408 insertions(+), 237 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-25 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-20 0.6.0
2016-01-01 0.5.0
2015-12-30 0.4.0
2015-06-07 0.3.0
2015-06-03 0.2
2015-01-08 0.1.3
2014-10-31 0.1.2
2014-10-26 0.1.1
2014-10-16 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-01 0.15.0
2015-10-27 0.14.0
2015-07-09 0.13.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-26 0.24
2015-06-19 0.19
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-31 1.0.6
2012-08-04 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-11 0.2.6
Title: R/Weka Interface Jars
Description: External jars required for package 'RWeka'.
Author: Kurt Hornik [aut, cre],
University of Waikato [ctb, cph] (Weka Java library)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWekajars versions 3.7.13-1 dated 2016-03-15 and 3.9.0-1 dated 2016-05-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/java/weka.jar |binary java/README | 3 +++ 4 files changed, 9 insertions(+), 6 deletions(-)
Title: R/Weka Interface
Description: An R interface to Weka (Version 3.9.0).
Weka is a collection of machine learning algorithms for data mining
tasks written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package 'RWeka' contains the interface code, the
Weka jar is in a separate package 'RWekajars'. For more information
on Weka see <http://www.cs.waikato.ac.nz/ml/weka/>.
Author: Kurt Hornik [aut, cre],
Christian Buchta [ctb],
Torsten Hothorn [ctb],
Alexandros Karatzoglou [ctb],
David Meyer [ctb],
Achim Zeileis [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWeka versions 0.4-26 dated 2016-03-29 and 0.4-27 dated 2016-05-04
CHANGELOG | 4 ++++ DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/doc/RWeka.pdf |binary inst/java/RWeka.jar |binary 5 files changed, 13 insertions(+), 9 deletions(-)
Title: Response Probability Functions
Description: The purpose of this package is to factor out logic and math common
to Item Factor Analysis fitting, diagnostics, and analysis. It is
envisioned as core support code suitable for more specialized IRT packages
to build upon. Complete access to optimized C functions are made available
with R_RegisterCCallable().
Author: Joshua Pritikin [cre, aut],
Jonathan Weeks [ctb],
Li Cai [ctb],
Carrie Houts [ctb],
Phil Chalmers [ctb],
Michael D. Hunter [ctb],
Carl F. Falk [ctb]
Maintainer: Joshua Pritikin <jpritikin@pobox.com>
Diff between rpf versions 0.51 dated 2015-12-16 and 0.52 dated 2016-05-04
DESCRIPTION | 12 +++++------ MD5 | 8 +++---- inst/doc/diagnostics.html | 44 +++++++++++++++++++++---------------------- inst/doc/flexmirt-plots.html | 6 ++--- inst/tests/test-raschfit.R | 2 - 5 files changed, 36 insertions(+), 36 deletions(-)
Title: Radiomic Image Processing Toolbox
Description: Functions to extract first and second order statistics from
images.
Author: Joel Carlson
Maintainer: Joel Carlson <jnkcarlson@gmail.com>
Diff between radiomics versions 0.1.1 dated 2015-11-28 and 0.1.2 dated 2016-05-04
DESCRIPTION | 22 ++-- LICENSE | 2 MD5 | 172 +++++++++++++++++++++++++--------- NAMESPACE | 4 NEWS.md |only R/CalculateFeatures.R | 33 ++++-- R/FirstOrder.R | 2 R/GLCM.R | 89 ++++++++++++----- R/GLCMFeatures.R | 40 +++++++ R/GLSZM.R | 7 - R/ImageQuantize.R | 5 R/MGLSZM.R | 21 +++- R/RcppExports.R |only R/startupMessage.R | 7 + README.md | 4 build/vignette.rds |binary inst/doc/TextureAnalysis.Rmd | 3 inst/doc/TextureAnalysis.html | 96 +++++++++++------- man/bars.Rd | 2 man/calc_features.Rd | 19 +-- man/discretizeImage.Rd | 6 - man/discretizeImage2.Rd | 2 man/first_order_features.Rd | 2 man/glcm.Rd | 8 - man/glcm0.Rd |only man/glcm135.Rd |only man/glcm45.Rd |only man/glcm90.Rd |only man/glcm_features.Rd | 2 man/glrlm.Rd | 8 - man/glrlm_features.Rd | 2 man/glszm.Rd | 8 - man/glszm_features.Rd | 2 man/hallbey.Rd | 2 man/image.radiomics.Rd | 2 man/mglszm.Rd | 10 - man/noise.Rd | 2 man/psf.Rd | 2 man/radiomics.Rd | 4 man/tumor.Rd | 2 src |only tests/csvs |only tests/testthat/test_GLCM.R | 38 ++++++- tests/testthat/test_GLCMFeatures.R | 32 ++++++ tests/testthat/test_GLRLM.R | 34 ++++++ tests/testthat/test_GLRLMFeatures.R | 31 ++++++ tests/testthat/test_GLSZM.R | 10 + tests/testthat/test_GLSZMFeatures.R | 8 + tests/testthat/test_MGLSZM.R | 10 + tests/testthat/test_discretizeImage.R | 2 vignettes/TextureAnalysis.Rmd | 3 51 files changed, 565 insertions(+), 195 deletions(-)
Title: Generalized Structured Component Analysis (GSCA)
Description: Fit a variety of component-based structural equation models.
Author: Heungsun Hwang, Sunmee Kim, Sungyoung Lee, Taesung Park
Maintainer: Sunmee Kim <sunmee.kim@mail.mcgill.ca>
Diff between gesca versions 1.0.1 dated 2016-03-04 and 1.0.2 dated 2016-05-04
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/gsca.mg.r | 20 +++++++++++--------- 3 files changed, 17 insertions(+), 15 deletions(-)
Title: European Commission Annual Macro-Economic (AMECO) Database
Description: Annual macro-economic database provided by the European Commission.
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>
Diff between ameco versions 0.2.2 dated 2016-02-04 and 0.2.3 dated 2016-05-04
DESCRIPTION | 8 - MD5 | 28 ++-- NAMESPACE | 4 R/data.R | 42 +++--- README.md | 176 ++++++++++++--------------- build/vignette.rds |binary data/ameco.RData |binary data/datalist | 2 inst/doc/ameco_dataset.R | 46 +++---- inst/doc/ameco_dataset.Rmd | 122 +++++++++--------- inst/doc/ameco_dataset.html | 285 +++++++++++++++++++++++--------------------- man/ameco.Rd | 60 ++++----- tests/testthat.R | 8 - tests/testthat/tests.R | 24 +-- vignettes/ameco_dataset.Rmd | 122 +++++++++--------- 15 files changed, 462 insertions(+), 465 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-12 1.6
2012-11-10 1.5
2012-04-23 1.4
2012-03-06 1.3
2011-11-02 1.2
2011-10-20 1.1
2011-09-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-04 0.1.3
2015-12-27 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-10 0.6.0
2015-07-14 0.5.57
2015-05-25 0.5.54
2015-03-04 0.5.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-24 2.0.0
2015-10-19 1.1.2
2015-09-16 1.1
2015-09-16 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-23 0.4.1
2016-01-16 0.4.0
2015-09-24 0.3
2015-07-18 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-21 1.0
2015-01-12 0.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-26 1.3
2015-03-21 1.2
2015-02-19 1.1
2015-02-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-18 1.16.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-27 0.1.5.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-09 2.2
2014-12-23 2.1
2014-11-04 2.0
2013-12-11 1.0.9
2012-09-28 1.0.6
Title: S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Description: An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with ts and base R by providing methods to extend
standard generics.
Author: Achim Zeileis [aut, cre],
Gabor Grothendieck [aut],
Jeffrey A. Ryan [aut],
Felix Andrews [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between zoo versions 1.7-12 dated 2015-03-16 and 1.7-13 dated 2016-05-04
DESCRIPTION | 10 +++---- MD5 | 52 ++++++++++++++++++++-------------------- NAMESPACE | 3 ++ NEWS | 28 +++++++++++++++++---- R/na.approx.R | 13 ++++++++-- R/na.fill.R | 8 +++--- R/plot.zoo.R | 3 +- R/rollapply.R | 8 +++--- R/rollmean.R | 2 - R/window.zoo.R | 16 ++++++------ R/xblocks.R | 2 - R/xyplot.zoo.R | 10 +++---- R/zooreg.R | 2 - build/vignette.rds |binary inst/CITATION | 4 +-- inst/doc/zoo-design.pdf |binary inst/doc/zoo-faq.pdf |binary inst/doc/zoo-quickref.pdf |binary inst/doc/zoo-read.pdf |binary inst/doc/zoo.pdf |binary man/ggplot2.zoo.Rd | 8 +++++- man/na.approx.Rd | 10 ++++--- man/yearqtr.Rd | 8 +++--- man/zoo.Rd | 2 - tests/Examples/zoo-Ex.Rout.save | 18 ++++++++++--- tests/as.Date.R | 3 ++ tests/as.Date.Rout.save | 9 ++++-- 27 files changed, 137 insertions(+), 82 deletions(-)
Title: Actual Evapotranspiration with Energy Balance Models
Description: Tools and functions to calculate actual evapotranspiration
using surface energy balance models.
Author: Guillermo Federico Olmedo [aut, cre], Samuel Ortega-Farias [aut],
David Fonseca-Luengo [aut], Daniel de la Fuente-Saiz [aut], Fernando Fuentes
Peñailillo [aut]
Maintainer: Guillermo Federico Olmedo <guillermo.olmedo@gmail.com>
Diff between water versions 0.3 dated 2015-10-09 and 0.3.2 dated 2016-05-04
DESCRIPTION | 18 + MD5 | 90 ++++----- NAMESPACE | 2 NEWS | 9 R/water_METRIC.R | 25 +- R/water_WeatherStation.R | 16 + R/water_internals.R | 2 R/water_netRadiation.G.R | 109 ++--------- R/water_sensibleHeatFlux.R | 31 --- README.md | 26 +- build/vignette.rds |binary man/DEM_Talca.Rd | 55 ----- man/ET24h.Rd | 6 man/L7_Talca.Rd | 382 --------------------------------------- man/LAI.Rd | 14 - man/METRIC.EB.Rd | 22 +- man/METRIC.G.Rd | 4 man/METRIC.Rn.Rd | 6 man/METRICtopo.Rd | 2 man/SWtrasmisivity.Rd | 2 man/albedo.Rd | 24 -- man/calcAnchors.Rd | 15 - man/calcH.Rd | 31 +-- man/calcSR.Rd | 2 man/calcTOAr.Rd | 2 man/checkSRTMgrids.Rd | 2 man/createAoi.Rd | 4 man/dailyET.Rd | 7 man/getDataWS.Rd | 2 man/hourlyET.Rd | 24 +- man/incLWradiation.Rd | 2 man/incSWradiation.Rd | 2 man/loadImage.Rd | 4 man/momentumRoughnessLength.Rd | 6 man/netRadiation.Rd | 2 man/outLWradiation.Rd | 2 man/plot.waterWeatherStation.Rd | 12 - man/prepareSRTMdata.Rd | 2 man/print.waterWeatherStation.Rd | 2 man/read.WSdata.Rd | 20 +- man/read.WSdata2.Rd | 18 - man/soilHeatFlux.Rd | 8 man/solarAngles.Rd | 10 - man/surfaceTemperature.Rd | 2 man/waterOptions.Rd | 10 - vignettes/METRIC_advanced.Rmd | 14 - 46 files changed, 275 insertions(+), 775 deletions(-)
Title: A Framework for Data-Driven Stochastic Disease Spread
Simulations
Description: Livestock movements are important for the spread of many
infectious diseases between herds. The package provides an
efficient and flexible framework for stochastic disease spread
modelling that integrates within-herd disease dynamics as
continuous-time Markov chains and livestock movements between
herds as scheduled events. The core simulation solver is
implemented in C and uses 'OpenMP' (if available) to divide work
over multiple processors. The package contains template models and
can be extended with user defined models.
Author: Stefan Widgren (National Veterinary Institute, Sweden),
Pavol Bauer (Uppsala University, Sweden),
Stefan Engblom (Uppsala University, Sweden)
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between SimInf versions 1.0.0 dated 2016-01-08 and 2.0.0 dated 2016-05-04
SimInf-1.0.0/SimInf/R/siminf.R |only SimInf-1.0.0/SimInf/src/core/siminf_run.c |only SimInf-1.0.0/SimInf/src/events |only SimInf-1.0.0/SimInf/src/misc/siminf_error.c |only SimInf-1.0.0/SimInf/src/misc/siminf_error.h |only SimInf-1.0.0/SimInf/src/models/SISe.h |only SimInf-1.0.0/SimInf/src/models/SISe3.h |only SimInf-1.0.0/SimInf/tests/create_events.R |only SimInf-2.0.0/SimInf/DESCRIPTION | 22 SimInf-2.0.0/SimInf/MD5 | 127 +- SimInf-2.0.0/SimInf/NAMESPACE | 10 SimInf-2.0.0/SimInf/NEWS | 42 SimInf-2.0.0/SimInf/R/SISe.R | 79 - SimInf-2.0.0/SimInf/R/SISe3.R | 69 - SimInf-2.0.0/SimInf/R/SISe3_sp.R |only SimInf-2.0.0/SimInf/R/SISe_sp.R |only SimInf-2.0.0/SimInf/R/SimInf.R |only SimInf-2.0.0/SimInf/R/check_arguments.R | 10 SimInf-2.0.0/SimInf/R/demo_model.R | 54 - SimInf-2.0.0/SimInf/R/dependencies.R | 2 SimInf-2.0.0/SimInf/R/distance.R |only SimInf-2.0.0/SimInf/R/run_outer.R |only SimInf-2.0.0/SimInf/R/scheduled_events.R | 302 ++++-- SimInf-2.0.0/SimInf/R/siminf_model.R | 260 ++++-- SimInf-2.0.0/SimInf/configure | 2 SimInf-2.0.0/SimInf/configure.ac | 6 SimInf-2.0.0/SimInf/data |only SimInf-2.0.0/SimInf/man/SISe.Rd | 27 SimInf-2.0.0/SimInf/man/SISe3.Rd | 11 SimInf-2.0.0/SimInf/man/SISe3_sp-class.Rd |only SimInf-2.0.0/SimInf/man/SISe3_sp.Rd |only SimInf-2.0.0/SimInf/man/SISe_sp-class.Rd |only SimInf-2.0.0/SimInf/man/SISe_sp.Rd |only SimInf-2.0.0/SimInf/man/SimInf.Rd | 2 SimInf-2.0.0/SimInf/man/demo_model.Rd | 2 SimInf-2.0.0/SimInf/man/distance_matrix.Rd |only SimInf-2.0.0/SimInf/man/events_SISe3.Rd |only SimInf-2.0.0/SimInf/man/infected-methods.Rd | 8 SimInf-2.0.0/SimInf/man/plot-methods.Rd | 19 SimInf-2.0.0/SimInf/man/prevalence-methods.Rd | 9 SimInf-2.0.0/SimInf/man/run-methods.Rd | 9 SimInf-2.0.0/SimInf/man/run_outer-methods.Rd |only SimInf-2.0.0/SimInf/man/scheduled_events-class.Rd | 70 - SimInf-2.0.0/SimInf/man/scheduled_events.Rd | 42 SimInf-2.0.0/SimInf/man/show-scheduled_events-method.Rd | 2 SimInf-2.0.0/SimInf/man/siminf_model-class.Rd | 39 SimInf-2.0.0/SimInf/man/siminf_model.Rd | 12 SimInf-2.0.0/SimInf/man/summary-scheduled_events-method.Rd |only SimInf-2.0.0/SimInf/man/summary-siminf_model-method.Rd |only SimInf-2.0.0/SimInf/man/susceptible-methods.Rd | 8 SimInf-2.0.0/SimInf/man/u0_SISe3.Rd |only SimInf-2.0.0/SimInf/src/Makevars.in | 22 SimInf-2.0.0/SimInf/src/Makevars.win | 24 SimInf-2.0.0/SimInf/src/core/siminf_solver.c | 320 +++---- SimInf-2.0.0/SimInf/src/core/siminf_solver.h | 13 SimInf-2.0.0/SimInf/src/misc/siminf_arg.c | 71 + SimInf-2.0.0/SimInf/src/misc/siminf_arg.h | 10 SimInf-2.0.0/SimInf/src/misc/siminf_ldata.c |only SimInf-2.0.0/SimInf/src/misc/siminf_ldata.h |only SimInf-2.0.0/SimInf/src/models/SISe.c | 65 - SimInf-2.0.0/SimInf/src/models/SISe3.c | 67 - SimInf-2.0.0/SimInf/src/models/SISe3_sp.c |only SimInf-2.0.0/SimInf/src/models/SISe_sp.c |only SimInf-2.0.0/SimInf/src/siminf.c | 136 ++- SimInf-2.0.0/SimInf/src/siminf.h | 41 SimInf-2.0.0/SimInf/tests/SISe.R | 353 +++++--- SimInf-2.0.0/SimInf/tests/SISe3.R | 230 ++--- SimInf-2.0.0/SimInf/tests/SISe3_sp.R |only SimInf-2.0.0/SimInf/tests/SISe_sp.R |only SimInf-2.0.0/SimInf/tests/demo_model.R | 9 SimInf-2.0.0/SimInf/tests/ldata_sp.R |only SimInf-2.0.0/SimInf/tests/measures.R | 158 +++ SimInf-2.0.0/SimInf/tests/phi.R | 13 SimInf-2.0.0/SimInf/tests/run_outer.R |only SimInf-2.0.0/SimInf/tests/sample_select.R | 437 ++++++---- SimInf-2.0.0/SimInf/tests/scheduled_events.R | 276 ++++-- SimInf-2.0.0/SimInf/tests/siminf.R | 563 +++++++------ SimInf-2.0.0/SimInf/tests/siminf_model.R | 140 ++- 78 files changed, 2633 insertions(+), 1560 deletions(-)
Title: Standardized Climate Indices Such as SPI, SRI or SPEI
Description: Functions for generating Standardized Climate Indices (SCI).
SCI is a transformation of (smoothed) climate (or environmental)
time series that removes seasonality and forces the data to
take values of the standard normal distribution. SCI was
originally developed for precipitation. In this case it is
known as the Standardized Precipitation Index (SPI).
Author: Lukas Gudmundsson & James H. Stagge
Maintainer: Lukas Gudmundsson <lukas.gudmundsson@env.ethz.ch>
Diff between SCI versions 1.0-1 dated 2014-06-10 and 1.0-2 dated 2016-05-04
ChangeLog | 7 +++++++ DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 6 ++++++ R/distrstart.r | 32 ++++++++++++++++---------------- inst/CITATION | 33 +++++++++++++++++++++++++++++---- man/SCI-package.Rd | 15 ++++++++++----- man/dist.start.Rd | 6 +++--- man/fitSCI.Rd | 23 ++++++++++++++--------- man/genlog.Rd | 5 ++--- man/pe3.Rd | 5 ++--- 11 files changed, 104 insertions(+), 58 deletions(-)
Title: Statistical Transformations for Post-Processing Climate Model
Output
Description: Empirical adjustment of the distribution of variables originating from (regional) climate model simulations using quantile mapping.
Author: Lukas Gudmundsson
Maintainer: Lukas Gudmundsson <lukas.gudmundsson@env.ethz.ch>
Diff between qmap versions 1.0-3 dated 2014-06-10 and 1.0-4 dated 2016-05-04
ChangeLog | 5 ++++ DESCRIPTION | 12 ++++----- MD5 | 12 ++++----- NAMESPACE | 51 +++++++++++++++++++++++++++++++++++++++++ R/doQmapPTF.R | 64 ++++++++++++++++++++++++++++++---------------------- R/fitQmapDIST.R | 6 ++-- man/qmap-package.Rd | 6 ++-- 7 files changed, 111 insertions(+), 45 deletions(-)
Title: Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry
Data
Description: Dirichlet process mixture of multivariate normal, skew normal or skew t-distributions
modeling oriented towards flow-cytometry data pre-processing applications.
Author: Boris P. Hejblum [aut, cre],
Chariff Alkhassim [aut],
Francois Caron [aut]
Maintainer: Boris P. Hejblum <bhejblum@hsph.harvard.edu>
Diff between NPflow versions 0.9.0 dated 2016-04-27 and 0.10.1 dated 2016-05-04
DESCRIPTION | 12 MD5 | 101 ++- NEWS |only R/DPMGibbsN.R | 790 +++++++++++++++-------------- R/DPMGibbsN_parallel.R | 717 ++++++++++++++------------- R/DPMGibbsSkewN.R | 1110 +++++++++++++++++++++--------------------- R/DPMGibbsSkewN_parallel.R | 872 ++++++++++++++++---------------- R/DPMGibbsSkewT.R | 956 ++++++++++++++++++------------------ R/DPMGibbsSkewT_parallel.R | 857 ++++++++++++++++---------------- R/DPMpost.R | 513 +++++++++---------- R/NPflow-package.R | 8 R/RcppExports.R | 188 ++++--- R/dNNiW.R | 134 ++--- R/dNiW.R | 11 R/evalClustLoss.R | 136 ++--- R/logposterior_DPMG.R | 94 ++- R/logposterior_DPMSN.R | 123 ++-- R/logposterior_DPMST.R | 134 ++--- R/sample_alpha.R | 219 ++++---- R/similarityMat.R | 76 +- R/sliceSampler_N_parallel.R | 168 +++--- R/sliceSampler_skewT.R | 240 ++++----- inst/CITATION | 34 - man/DPMGibbsN.Rd | 17 man/DPMGibbsN_parallel.Rd | 27 - man/DPMGibbsSkewN.Rd | 16 man/DPMGibbsSkewN_parallel.Rd | 16 man/DPMGibbsSkewT.Rd | 16 man/DPMGibbsSkewT_parallel.Rd | 16 man/DPMpost.Rd | 5 man/NPflow-package.Rd | 8 man/mmvnpdfC.Rd | 35 - man/mmvsnpdfC.Rd | 26 man/mmvstpdfC.Rd | 17 man/mmvtpdfC.Rd | 11 man/mvnlikC.Rd |only man/mvnpdfC.Rd | 10 man/mvsnlikC.Rd |only man/mvstlikC.Rd | 6 man/sample_alpha.Rd | 9 man/similarityMat_nocostC.Rd | 6 src/RcppExports.cpp | 47 + src/lgamma_mvC.cpp | 4 src/mmNiWpdfC.cpp | 8 src/mmsNiWpdfC.cpp | 8 src/mmvnpdfC.cpp | 59 +- src/mmvsnpdfC.cpp | 58 +- src/mmvstpdfC.cpp | 25 src/mmvtpdfC.cpp | 21 src/mvnlikC.cpp |only src/mvnpdfC.cpp | 16 src/mvsnlikC.cpp |only src/mvstlikC.cpp | 8 src/similarityMat_nocostC.cpp | 8 54 files changed, 4179 insertions(+), 3817 deletions(-)
Title: Building Augmented Data to Run Multi-State Models with 'msm'
Package
Description: A fast and general method for restructuring classical longitudinal data into
augmented ones. The reason for this is to facilitate the modeling of longitudinal data under
a multi-state framework using the 'msm' package.
Author: Francesco Grossetti [aut, cre]
Maintainer: Francesco Grossetti <francesco.grossetti@polimi.it>
Diff between msmtools versions 1.0 dated 2016-04-26 and 1.1 dated 2016-05-04
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- R/augment.R | 88 ++++++++++++++++++++++++------------------------ R/onAttach.R | 4 +- README.md | 4 ++ inst/doc/msmtools.Rmd | 3 + man/augment.Rd | 9 +++- vignettes/msmtools.Rmd | 3 + vignettes/msmtools.html | 11 +++--- 9 files changed, 80 insertions(+), 66 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone and Ryan Kyle
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 0.9-74 dated 2016-02-25 and 0.9-76 dated 2016-05-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/epi.2by2.r | 4 +++- R/epi.mh.R | 7 ++++--- 4 files changed, 14 insertions(+), 11 deletions(-)
Title: Optimal k-Means Clustering for One-Dimensional Data
Description: A dynamic programming algorithm for optimal one-dimensional k-means clustering. The algorithm minimizes the sum of squares of within-cluster distances. As an alternative to the standard heuristic k-means algorithm, this algorithm guarantees optimality and repeatability.
Author: Joe Song and Haizhou Wang
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between Ckmeans.1d.dp versions 3.3.1 dated 2015-02-10 and 3.3.3 dated 2016-05-04
DESCRIPTION | 9 MD5 | 19 - NAMESPACE | 9 NEWS | 53 ++- R/Ckmeans.1d.dp.R | 56 ++-- man/Ckmeans.1d.dp.Rd | 18 - man/print.Ckmeans.1d.dp.Rd | 2 src/Ckmeans.1d.dp.cpp | 617 ++++++++++++++++++++++----------------------- src/Ckmeans.1d.dp.h | 22 - src/Ckmeans.1d.dp_main.cpp | 92 ++---- tests/testthat |only 11 files changed, 448 insertions(+), 449 deletions(-)
Title: Beta Product Confidence Procedure for Right Censored Data
Description: Calculates nonparametric pointwise confidence intervals for the survival distribution for right censored data. Has two-sample tests for dissimilarity (e.g., difference, ratio or odds ratio) in survival at a fixed time. Especially important for small sample sizes or heavily censored data. Includes mid-p options.
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between bpcp versions 1.3.2 dated 2016-03-28 and 1.3.3 dated 2016-05-04
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 5 +++++ R/bpcp2sample.R | 4 +--- R/kmciFunctions.R | 2 +- inst/doc/discreteBPCP.pdf |binary man/bpcp-package.Rd | 4 ++-- man/plot.kmciLR.Rd | 2 +- 8 files changed, 21 insertions(+), 18 deletions(-)
Title: Estimating Age Modification Effect on Genetic and Environmental
Variance Components in Twin Models
Description: Twin models that are able to estimate the dynamic behaviour of the variance components in the classical twin models with respect to age using B-splines and P-splines.
Author: Liang He
Maintainer: Liang He <liang.he@duke.edu>
Diff between ACEt versions 1.5.3 dated 2016-04-01 and 1.5.6 dated 2016-05-04
DESCRIPTION | 13 +- MD5 | 31 +++-- NAMESPACE | 2 R/AtCtEt.R | 65 ++++++++---- R/AtCtEtp.R | 274 +++++++++++++++++++--------------------------------- R/acetp_mcmc.R | 4 R/mcmc_epsp.R | 44 ++------ R/plot_AtCtEt.R | 37 +++---- R/plot_AtCtEt_h.R | 110 +++++++++++++++----- R/plot_AtCtEtp.R | 53 +++++----- R/plot_acet.R | 7 + R/test_AtCtEtp.R |only data/data_ace.rda |binary man/ACEt-package.Rd | 6 - man/plot_acet.Rd | 2 src/AtCtEt.cpp | 228 +++++++++++++++++++++++++++++++++++++++++++ src/mcmc.cc | 77 ++++++++------ 17 files changed, 600 insertions(+), 353 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-14 1.0-4
2015-02-17 1.0-3
2013-10-29 1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-18 1.1-2
2015-04-10 1.1-1
2015-01-07 1.1-0
2013-09-21 1.0-0
2013-04-04 0.01-4
2013-03-12 0.01-3
2013-02-21 0.01-2
2012-11-30 0.01-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-09 0.6.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-06 1.0-4
2014-12-06 1.0-3
2013-10-29 1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-08 1.0.1
2014-08-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-29 0.1.0
2015-10-04 0.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-19 0.3.2
2015-10-29 0.3.1
2015-07-30 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-02 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-17 1.1.2
2016-02-19 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-18 1.2-7
2012-04-23 1.2-6
2012-01-07 1.2-5
2011-12-19 1.2-4
2011-12-17 1.2-3
2011-09-28 1.2-2
2011-09-03 1.2-1
2011-05-15 1.1
2010-07-24 1.0-1
2010-06-02 1.0