Title: Bi-Directional Interface Between R and Scala with Callbacks
Description: The Scala interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala. Scala versions 2.10 and 2.11 are supported.
Author: David B. Dahl [aut, cre],
Scala developers [ctb] (see http://scala-lang.org/)
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 1.0.9 dated 2016-03-12 and 1.0.11 dated 2016-05-12
rscala-1.0.11/rscala/DESCRIPTION | 10 +++++----- rscala-1.0.11/rscala/MD5 | 15 +++++++-------- rscala-1.0.11/rscala/NEWS | 12 +++++++++++- rscala-1.0.11/rscala/R/scalaInterpreter.R | 7 ++----- rscala-1.0.11/rscala/inst/java/rscala_2.10-1.0.11.jar |only rscala-1.0.11/rscala/inst/java/rscala_2.11-1.0.11.jar |only rscala-1.0.11/rscala/java/rscala_2.10-1.0.11-sources.jar |only rscala-1.0.11/rscala/java/rscala_2.11-1.0.11-sources.jar |only rscala-1.0.9/rscala/inst/doc |only rscala-1.0.9/rscala/inst/java/rscala_2.10-1.0.9.jar |only rscala-1.0.9/rscala/inst/java/rscala_2.11-1.0.9.jar |only rscala-1.0.9/rscala/java/rscala_2.10-1.0.9-sources.jar |only rscala-1.0.9/rscala/java/rscala_2.11-1.0.9-sources.jar |only 13 files changed, 25 insertions(+), 19 deletions(-)
Title: Local Polynomial Regression of State Dependent Covariates in
State-Space Models
Description: Facilitates local polynomial regression for state dependent covariates in state-space models. The functionality can also be used from 'C++' based model builder tools such as 'Rcpp'/'inline', 'TMB', or 'JAGS'.
Author: Christoffer Moesgaard Albertsen [aut, cre]
Maintainer: Christoffer Moesgaard Albertsen <cmoe@aqua.dtu.dk>
Diff between covafillr versions 0.2.1 dated 2016-02-23 and 0.3.0 dated 2016-05-12
DESCRIPTION | 8 MD5 | 39 ++-- NEWS |only R/covafill.R | 37 +++- R/covatree.R | 6 R/loadJAGSModule.R | 2 README.md | 62 +++--- configure | 80 +++++--- configure.ac | 64 +++---- configure.win | 86 +++++---- inst/examples/ssmtest/ssmtest.R | 2 inst/include/covafill/dox/Doxyfile | 2 inst/include/covafill/dox/mainpage.md | 17 + inst/include/covafill/src/Core/covafill.hpp | 3 inst/include/covafill/src/Core/covafill_operators.hpp | 90 +++++++++- inst/include/covafill/src/Interpolate/unicubicInterpolation.hpp | 24 ++ inst/include/covafill/src/macros.hpp | 6 man/covafill-class.Rd | 4 man/covatree-class.Rd | 3 man/loadJAGSModule.Rd | 2 src/headers/fill.hpp | 43 ++++ 21 files changed, 405 insertions(+), 175 deletions(-)
Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a development/production release paradigm. Introduces a
generalized package installation process which supports multiple repository
and non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.9.19 dated 2015-09-17 and 0.10.13 dated 2016-05-12
switchr-0.10.13/switchr/DESCRIPTION | 13 switchr-0.10.13/switchr/MD5 | 204 ++++++----- switchr-0.10.13/switchr/NAMESPACE | 5 switchr-0.10.13/switchr/NEWS | 291 +++++++++++++---- switchr-0.10.13/switchr/R/AllClasses.R | 15 switchr-0.10.13/switchr/R/GitFunctions.R | 32 + switchr-0.10.13/switchr/R/SVNFunctions.R | 28 + switchr-0.10.13/switchr/R/Utilities.R | 116 ++++-- switchr-0.10.13/switchr/R/accessors.R | 102 +++++ switchr-0.10.13/switchr/R/annotateDESCs.R | 4 switchr-0.10.13/switchr/R/biocManifest.R | 43 +- switchr-0.10.13/switchr/R/biocversion.R | 2 switchr-0.10.13/switchr/R/lazyRepo.R | 15 switchr-0.10.13/switchr/R/loadManifest.R | 4 switchr-0.10.13/switchr/R/makeBiocVersions.R | 4 switchr-0.10.13/switchr/R/makePkgSourceDir-methods.R | 35 +- switchr-0.10.13/switchr/R/manifestFromLib.R | 14 switchr-0.10.13/switchr/R/methods.R | 14 switchr-0.10.13/switchr/R/retrievePkgVersion.R | 77 +++- switchr-0.10.13/switchr/build/vignette.rds |binary switchr-0.10.13/switchr/inst/cranarchivetest.R |only switchr-0.10.13/switchr/inst/doc/switchrvign.R | 6 switchr-0.10.13/switchr/inst/doc/switchrvign.Rnw | 4 switchr-0.10.13/switchr/inst/doc/switchrvign.pdf |binary switchr-0.10.13/switchr/inst/oldlib.R |only switchr-0.10.13/switchr/inst/sinfo3.0.2.txt |only switchr-0.10.13/switchr/man/BiocDevel.Rd | 9 switchr-0.10.13/switchr/man/BiocRelease.Rd | 9 switchr-0.10.13/switchr/man/BiocSVNManifest.Rd | 14 switchr-0.10.13/switchr/man/BiocVers.Rd | 2 switchr-0.10.13/switchr/man/GithubManifest.Rd | 4 switchr-0.10.13/switchr/man/LibraryProfile-class.Rd | 2 switchr-0.10.13/switchr/man/ManifestRow.Rd | 2 switchr-0.10.13/switchr/man/PkgManifest.Rd | 2 switchr-0.10.13/switchr/man/PkgSource-class.Rd | 2 switchr-0.10.13/switchr/man/RepoSubset.Rd | 2 switchr-0.10.13/switchr/man/SessionManifest.Rd | 2 switchr-0.10.13/switchr/man/SwitchrCtx.Rd | 2 switchr-0.10.13/switchr/man/SwitchrParam.Rd | 2 switchr-0.10.13/switchr/man/addPkg.Rd | 13 switchr-0.10.13/switchr/man/archive_retries.Rd | 4 switchr-0.10.13/switchr/man/archive_timing.Rd | 10 switchr-0.10.13/switchr/man/biocReposForVers.Rd | 2 switchr-0.10.13/switchr/man/branch.Rd | 2 switchr-0.10.13/switchr/man/checkIsPkgDir.Rd | 2 switchr-0.10.13/switchr/man/cmethods.Rd | 2 switchr-0.10.13/switchr/man/cranPkgVersManifest.Rd | 2 switchr-0.10.13/switchr/man/currentCompEnv.Rd | 2 switchr-0.10.13/switchr/man/defaultRepos.Rd | 2 switchr-0.10.13/switchr/man/dep_repos.Rd | 4 switchr-0.10.13/switchr/man/dl_method.Rd | 2 switchr-0.10.13/switchr/man/errorOrNonZero.Rd | 2 switchr-0.10.13/switchr/man/fileFromFileURL.Rd | 2 switchr-0.10.13/switchr/man/findPkgDir.Rd | 2 switchr-0.10.13/switchr/man/findPkgVersionInRepo.Rd | 2 switchr-0.10.13/switchr/man/flushSession.Rd | 2 switchr-0.10.13/switchr/man/full_libpaths.Rd | 2 switchr-0.10.13/switchr/man/getPkgDir.Rd | 2 switchr-0.10.13/switchr/man/gotoVersCommit.Rd | 2 switchr-0.10.13/switchr/man/headtail.Rd | 2 switchr-0.10.13/switchr/man/install.Rd | 2 switchr-0.10.13/switchr/man/lazyRepo.Rd | 2 switchr-0.10.13/switchr/man/libManifest.Rd | 2 switchr-0.10.13/switchr/man/library_paths.Rd | 2 switchr-0.10.13/switchr/man/librarypath.Rd |only switchr-0.10.13/switchr/man/loadGRAN.Rd | 2 switchr-0.10.13/switchr/man/loadManifest.Rd | 2 switchr-0.10.13/switchr/man/locatePkgVersion.Rd | 2 switchr-0.10.13/switchr/man/location-methods.Rd | 2 switchr-0.10.13/switchr/man/logfun.Rd | 2 switchr-0.10.13/switchr/man/makeBiocSVNURL.Rd | 8 switchr-0.10.13/switchr/man/makeFileURL.Rd | 2 switchr-0.10.13/switchr/man/makeLibraryCtx.Rd | 2 switchr-0.10.13/switchr/man/makeManifest.Rd | 2 switchr-0.10.13/switchr/man/makePkgCheckout.Rd | 2 switchr-0.10.13/switchr/man/makePkgDir.Rd | 2 switchr-0.10.13/switchr/man/makeSeedMan.Rd | 2 switchr-0.10.13/switchr/man/makeSource.Rd | 2 switchr-0.10.13/switchr/man/manifest_df.Rd | 2 switchr-0.10.13/switchr/man/manifest_methods.Rd | 2 switchr-0.10.13/switchr/man/normalizePath2.Rd | 2 switchr-0.10.13/switchr/man/notrack.Rd | 2 switchr-0.10.13/switchr/man/nrow.Rd |only switchr-0.10.13/switchr/man/packages.Rd | 2 switchr-0.10.13/switchr/man/parseSessionInfoString.Rd | 2 switchr-0.10.13/switchr/man/parsedSessionInfo-class.Rd | 2 switchr-0.10.13/switchr/man/pkgname.Rd | 2 switchr-0.10.13/switchr/man/publishManifest.Rd | 2 switchr-0.10.13/switchr/man/rVersionManifest.Rd | 2 switchr-0.10.13/switchr/man/removeLib.Rd | 2 switchr-0.10.13/switchr/man/sh_init.Rd | 2 switchr-0.10.13/switchr/man/shell_timing.Rd | 2 switchr-0.10.13/switchr/man/subdir.Rd | 2 switchr-0.10.13/switchr/man/switchBack.Rd | 2 switchr-0.10.13/switchr/man/switchDeps.Rd | 6 switchr-0.10.13/switchr/man/switchTo.Rd | 2 switchr-0.10.13/switchr/man/switchrBaseDir.Rd | 2 switchr-0.10.13/switchr/man/switchrDontUnload.Rd | 2 switchr-0.10.13/switchr/man/switchrManifest.Rd | 2 switchr-0.10.13/switchr/man/switchrNoUnload.Rd | 2 switchr-0.10.13/switchr/man/system_w_init.Rd | 9 switchr-0.10.13/switchr/man/updateManifest.Rd | 2 switchr-0.10.13/switchr/man/versions.Rd | 2 switchr-0.10.13/switchr/tests/winpath.R | 219 ++++++++---- switchr-0.10.13/switchr/vignettes/switchrvign.Rnw | 4 switchr-0.9.19/switchr/man/Rcmd.Rd |only 106 files changed, 970 insertions(+), 499 deletions(-)
Title: Maximum Likelihood Models for Species Abundance Distributions
Description: Maximum likelihood tools to fit and compare models of species
abundance distributions and of species rank-abundance distributions.
Author: Paulo I. Prado, Murilo Dantas Miranda and Andre Chalom
Maintainer: Paulo I. Prado <prado@ib.usp.br>
Diff between sads versions 0.2.4 dated 2015-11-03 and 0.3.1 dated 2016-05-12
sads-0.2.4/sads/R/octav.R |only sads-0.3.1/sads/DESCRIPTION | 9 - sads-0.3.1/sads/MD5 | 171 +++++++++++++++--------------- sads-0.3.1/sads/NAMESPACE | 25 ++-- sads-0.3.1/sads/NEWS | 15 ++ sads-0.3.1/sads/R/dbs.R | 2 sads-0.3.1/sads/R/dgs.R | 2 sads-0.3.1/sads/R/distr.R | 2 sads-0.3.1/sads/R/dmand.R | 2 sads-0.3.1/sads/R/dmzsm.R | 3 sads-0.3.1/sads/R/dpowbend.R |only sads-0.3.1/sads/R/dvolkov.R | 11 + sads-0.3.1/sads/R/dzipf.R | 2 sads-0.3.1/sads/R/fitbs.R | 1 sads-0.3.1/sads/R/fitgamma.R | 1 sads-0.3.1/sads/R/fitgeom.R | 1 sads-0.3.1/sads/R/fitgs.R | 12 +- sads-0.3.1/sads/R/fitlnorm.R | 1 sads-0.3.1/sads/R/fitls.R | 1 sads-0.3.1/sads/R/fitmand.R | 1 sads-0.3.1/sads/R/fitmzsm.R | 1 sads-0.3.1/sads/R/fitnbinom.R | 1 sads-0.3.1/sads/R/fitpareto.R | 1 sads-0.3.1/sads/R/fitpoilog.R | 5 sads-0.3.1/sads/R/fitpowbend.R |only sads-0.3.1/sads/R/fitpower.R | 1 sads-0.3.1/sads/R/fitrbs.R | 1 sads-0.3.1/sads/R/fitsad.R | 3 sads-0.3.1/sads/R/fitvolkov.R | 1 sads-0.3.1/sads/R/fitweibull.R | 1 sads-0.3.1/sads/R/fitzipf.R | 1 sads-0.3.1/sads/R/pbs.R | 17 +- sads-0.3.1/sads/R/pgs.R | 10 + sads-0.3.1/sads/R/plotprofmle.R | 92 ++++++++++++---- sads-0.3.1/sads/R/pls.R | 10 + sads-0.3.1/sads/R/pmand.R | 25 ++-- sads-0.3.1/sads/R/pmzsm.R | 10 + sads-0.3.1/sads/R/ppoig.R | 10 + sads-0.3.1/sads/R/ppoilog.R | 10 + sads-0.3.1/sads/R/ppoix.R | 10 + sads-0.3.1/sads/R/ppowbend.R |only sads-0.3.1/sads/R/prbs.R | 10 + sads-0.3.1/sads/R/pvolkov.R | 10 + sads-0.3.1/sads/R/pzipf.R | 1 sads-0.3.1/sads/R/qbs.R | 5 sads-0.3.1/sads/R/qgs.R | 2 sads-0.3.1/sads/R/qls.R | 14 +- sads-0.3.1/sads/R/qmzsm.R | 10 + sads-0.3.1/sads/R/qpoig.R | 20 ++- sads-0.3.1/sads/R/qpoilog.R | 14 +- sads-0.3.1/sads/R/qpoix.R | 20 ++- sads-0.3.1/sads/R/qpowbend.R |only sads-0.3.1/sads/R/qpower.R | 14 +- sads-0.3.1/sads/R/qrbs.R | 2 sads-0.3.1/sads/R/rsad.R | 106 +++++++++++++++--- sads-0.3.1/sads/R/sads-classes.R | 5 sads-0.3.1/sads/R/sads-methods.R | 123 ++++++++++++++++----- sads-0.3.1/sads/R/utils.R | 93 +++++++++------- sads-0.3.1/sads/README.md | 2 sads-0.3.1/sads/build/vignette.rds |binary sads-0.3.1/sads/inst/doc/sads_intro.R | 16 +- sads-0.3.1/sads/inst/doc/sads_intro.Rnw | 46 +++++--- sads-0.3.1/sads/inst/doc/sads_intro.pdf |binary sads-0.3.1/sads/man/dbs.Rd | 7 + sads-0.3.1/sads/man/dgs.Rd | 5 sads-0.3.1/sads/man/distr.Rd | 4 sads-0.3.1/sads/man/dls.Rd | 5 sads-0.3.1/sads/man/dman.Rd | 5 sads-0.3.1/sads/man/dmzsm.Rd | 5 sads-0.3.1/sads/man/dpareto.Rd | 5 sads-0.3.1/sads/man/dpoig.Rd | 15 -- sads-0.3.1/sads/man/dpoilog.Rd | 14 +- sads-0.3.1/sads/man/dpoix.Rd | 15 -- sads-0.3.1/sads/man/dpowbend.Rd |only sads-0.3.1/sads/man/dpower.Rd | 5 sads-0.3.1/sads/man/dtrunc.Rd | 12 +- sads-0.3.1/sads/man/dvolkov.Rd | 11 + sads-0.3.1/sads/man/dzipf.Rd | 5 sads-0.3.1/sads/man/fitrad.Rd | 11 + sads-0.3.1/sads/man/fitsad.Rd | 49 ++------ sads-0.3.1/sads/man/likelregions-class.Rd |only sads-0.3.1/sads/man/octav-class.Rd | 24 ++-- sads-0.3.1/sads/man/octav.Rd | 23 +++- sads-0.3.1/sads/man/plotprofmle.Rd | 31 ++++- sads-0.3.1/sads/man/rsad.Rd | 103 ++++++++++++------ sads-0.3.1/sads/man/sads-package.Rd | 6 - sads-0.3.1/sads/man/stats.Rd | 2 sads-0.3.1/sads/man/summary.sads-class.Rd | 8 - sads-0.3.1/sads/src/volkov.c | 8 - sads-0.3.1/sads/vignettes/sads_intro.Rnw | 46 +++++--- 90 files changed, 949 insertions(+), 460 deletions(-)
Title: R Source Code Formatter
Description: The R Formatter formats R source code. It is very much based on
formatR, but tries to improve it by heuristics. For example, spaces can be
forced around the division operator "/".
Author: Benjamin Fischer [aut, cre]
Maintainer: Benjamin Fischer <benjamin.fischer@evolutics.info>
Diff between RFormatter versions 0.1.0 dated 2015-10-06 and 0.1.1 dated 2016-05-12
DESCRIPTION | 7 ++++--- MD5 | 13 +++++++------ NAMESPACE | 2 +- NEWS.md |only R/format_R_source_code.R | 16 ++++++++++++++-- README.md | 14 +++++++++++--- man/format_R_source_code.Rd | 8 +++++--- tests/testthat/cases.csv | 2 ++ 8 files changed, 44 insertions(+), 18 deletions(-)
Title: Multi-Group Sparse Discriminant Analysis
Description: Implements Multi-Group Sparse Discriminant Analysis proposal of I.Gaynanova, J.Booth and M.Wells (2015), Simultaneous sparse estimation of canonical vectors in the p>>N setting, JASA, to appear.
Author: Irina Gaynanova
Maintainer: Irina Gaynanova <irinag@stat.tamu.edu>
Diff between MGSDA versions 1.2 dated 2015-09-01 and 1.3 dated 2016-05-12
DESCRIPTION | 10 +- MD5 | 18 ++--- R/classifyV.R | 62 +++++++++--------- R/cv.dLDA.R | 171 +++++++++++++++++++++++++++++--------------------- R/dLDA.R | 38 ++++++----- man/MGSDA-package.Rd | 8 +- man/classifyV.Rd | 2 man/cv.dLDA.Rd | 10 +- man/dLDA.Rd | 12 ++- src/solveVcoordf2st.c | 32 +++++++++ 10 files changed, 223 insertions(+), 140 deletions(-)
Title: Koul's Minimum Distance Estimation in Linear Regression and
Autoregression Model
Description: Consider linear regression model and autoregressive model of order p where errors in the linear regression model and innovations in the autoregression model are independent and symmetrically distributed. Hira L. Koul proposed a nonparametric minimum distance estimation method by minimizing L2-type distance between certain weighted residual empirical distribution functions. He also proposed a simpler version of the loss function by using symmetry of the integrating measure in the distance. This package contains three functions: KoulLrMde(), KoulArMde(), and Koul2StageMDE(). KoulLrMde() and KoulArMde() provide minimum distance estimators for linear regression model and autoregression model, respectively, where both are based on Koul's method. These two functions take much less time for the computation than those based on parametric minimum distance estimation methods. Koul2StageMDE() provides estimators for regression and autoregressive coefficients of linear regression model with autoregressive errors through minimum distant method of two stages.
Author: Jiwoong Kim [aut, cre]
Maintainer: Jiwoong Kim <kimjiwo2@stt.msu.edu>
Diff between KoulMde versions 1.1 dated 2016-04-21 and 2.0 dated 2016-05-12
DESCRIPTION | 8 ++-- MD5 | 11 +++-- NAMESPACE | 1 R/MdeFunc.R | 98 +++++++++++++++++++++++++++++++++++++++++++++++++-- man/Koul2StageMDE.Rd |only man/KoulArMde.Rd | 2 - man/KoulLrMde.Rd | 2 - 7 files changed, 109 insertions(+), 13 deletions(-)
Title: Covariate Balancing Propensity Score
Description: Implements the covariate balancing propensity score (CBPS) proposed by Imai and Ratkovic (2014) <DOI:10.1111/rssb.12027>. The propensity score is estimated such that it maximizes the resulting covariate balance as well as the prediction of treatment assignment. The method, therefore, avoids an iteration between model fitting and balance checking. The package also implements several extensions of the CBPS beyond the cross-sectional, binary treatment setting. The current version implements the CBPS for longitudinal settings so that it can be used in conjunction with marginal structural models from Imai and Ratkovic (2015) <DOI:10.1080/01621459.2014.956872>, treatments with three- and four-valued treatment variables, continuous-valued treatments from Fong, Hazlett, and Imai (2015) <http://imai.princeton.edu/research/files/CBGPS.pdf>, and the situation with multiple distinct binary treatments administered simultaneously. In the future it will be extended to other settings including the generalization of experimental and instrumental variable estimates. Recently add the optimal CBPS which chooses the optimal balancing function and results in doubly robust and efficient estimator for the treatment effect.
Author: Christian Fong <christianfong@stanford.edu>, Marc Ratkovic <ratkovic@princeton.edu>, Chad Hazlett <chazlett@ucla.edu>, Xiaolin Yang <xiaoliny@princeton.edu>, Kosuke Imai <kimai@princeton.edu>
Maintainer: Christian Fong <christianfong@stanford.edu>
Diff between CBPS versions 0.10 dated 2015-09-21 and 0.11 dated 2016-05-12
ChangeLog | 3 DESCRIPTION | 12 MD5 | 25 - NAMESPACE | 2 R/CBIV.R | 146 +++++--- R/CBMSM.R | 7 R/CBPSBinary.R | 27 - R/CBPSMain.R | 911 +++++++++++++++++++++++++------------------------- R/CBPSMultiTreat.r | 1 R/CBPSOptimalBinary.R |only data/LaLonde.tab.gz |binary man/CBMSM.Rd | 5 man/CBPS.Rd | 34 + man/LaLonde.Rd | 4 14 files changed, 646 insertions(+), 531 deletions(-)
Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data
artifacts are produced. Artifacts like: subsets, data aggregates, plots,
statistical models, different versions of data sets and different versions
of results. The more projects we work with the more artifacts are produced
and the harder it is to manage these artifacts. Archivist helps to store
and manage artifacts created in R. Archivist allows you to store selected
artifacts as a binary files together with their metadata and relations.
Archivist allows to share artifacts with others, either through shared
folder or github. Archivist allows to look for already created artifacts by
using it's class, name, date of the creation or other properties. Makes it
easy to restore such artifacts. Archivist allows to check if new artifact
is the exact copy that was produced some time ago. That might be useful
either for testing or caching.
Author: Przemyslaw Biecek [aut, cre],
Marcin Kosinski [aut],
Witold Chodor [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between archivist versions 2.0.3 dated 2016-03-07 and 2.0.4 dated 2016-05-12
DESCRIPTION | 7 +- MD5 | 132 ++++++++++++++++++++++----------------------- NEWS.md | 8 ++ R/Repository.R | 3 + R/Tags.R | 2 R/addArchivistHooks.R | 2 R/addTagsRepo.R | 3 + R/ahistory.R | 2 R/alink.R | 3 + R/archivist-package.R | 12 +++- R/archivistOptions.R | 3 + R/aread.R | 3 + R/asearch.R | 3 + R/asession.R | 3 + R/atags.R | 3 + R/cache.R | 3 + R/copyToRepo.R | 3 + R/createEmptyRepo.R | 3 + R/createMDGallery.R | 7 +- R/deleteRepo.R | 2 R/getRemoteHook.R | 2 R/getTags.R | 2 R/loadFromRepo.R | 2 R/magrittr.R | 3 + R/md5hash.R | 3 + R/restoreLibraries.R | 18 +++++- R/rmFromRepo.R | 3 + R/saveToRepo.R | 4 + R/searchInRepo.R | 2 R/setRepo.R | 3 + R/shinySearchInLocalRepo.R | 3 + R/showRepo.R | 2 R/splitTags.R | 3 + R/summaryRepo.R | 4 + R/zipRepo.R | 2 man/Repository.Rd | 3 + man/Tags.Rd | 2 man/addHooksToPrint.Rd | 2 man/addTagsRepo.Rd | 2 man/aformat.Rd | 3 + man/ahistory.Rd | 2 man/alink.Rd | 3 + man/archivist-package.Rd | 11 +++ man/archivistOptions.Rd | 3 + man/aread.Rd | 2 man/asearch.Rd | 2 man/asession.Rd | 3 + man/cache.Rd | 3 + man/copyToRepo.Rd | 2 man/createEmptyRepo.Rd | 3 + man/createMDGallery.Rd | 7 ++ man/deleteLocalRepo.Rd | 2 man/getRemoteHook.Rd | 3 + man/getTags.Rd | 2 man/loadFromRepo.Rd | 2 man/magrittr.Rd | 3 + man/md5hash.Rd | 3 + man/restoreLibs.Rd | 11 +++ man/rmFromLocalRepo.Rd | 2 man/saveToRepo.Rd | 2 man/searchInRepo.Rd | 2 man/setRepo.Rd | 3 + man/shinySearchInRepo.Rd | 3 + man/showRepo.Rd | 2 man/splitTags.Rd | 2 man/summaryRepo.Rd | 2 man/zipRepo.Rd | 2 67 files changed, 281 insertions(+), 81 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.6.2 dated 2016-05-10 and 0.6.3 dated 2016-05-12
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/vardcros.R | 11 +++++++---- R/vardomh.R | 4 ++-- R/varpoord.R | 4 ++-- inst/CITATION | 4 ++-- inst/NEWS | 4 ++++ man/vardpoor-package.Rd | 4 ++-- 8 files changed, 30 insertions(+), 23 deletions(-)
Title: Machine Coded Genetic Algorithms for Real-Valued Optimization
Problems
Description: Machine coded genetic algorithm (MCGA) is a fast tool for
real-valued optimization problems. It uses the byte
representation of variables rather than real-values. It
performs the classical crossover operations (uniform) on these
byte representations. Mutation operator is also similar to
classical mutation operator, which is to say, it changes a
randomly selected byte value of a chromosome by +1 or -1 with
probability 1/2. In MCGAs there is no need for
encoding-decoding process and the classical operators are
directly applicable on real-values. It is fast and can handle a
wide range of a search space with high precision. Using a
256-unary alphabet is the main disadvantage of this algorithm
but a moderate size population is convenient for many problems.
Package also includes multi_mcga function for multi objective
optimization problems. This function sorts the chromosomes
using their ranks calculated from the non-dominated sorting
algorithm.
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>
Diff between mcga versions 3.0 dated 2016-03-24 and 3.0.1 dated 2016-05-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/oplibrary.R | 6 +++--- man/mcga2.Rd | 4 ++-- 4 files changed, 12 insertions(+), 12 deletions(-)
Title: Nonparametric Hypothesis Tests of Isotropy and Symmetry
Description: Implements nonparametric hypothesis tests to check isotropy and
symmetry properties for two-dimensional spatial data.
Author: Zachary Weller [aut, cre]
Maintainer: Zachary Weller <wellerz@stat.colostate.edu>
Diff between spTest versions 0.2.3 dated 2015-11-10 and 0.2.4 dated 2016-05-12
spTest-0.2.3/spTest/R/coords_aniso.R |only spTest-0.2.3/spTest/man/coords.aniso.Rd |only spTest-0.2.4/spTest/DESCRIPTION | 14 spTest-0.2.4/spTest/MD5 | 52 spTest-0.2.4/spTest/NAMESPACE | 2 spTest-0.2.4/spTest/R/GuanTestGrid.R | 39 spTest-0.2.4/spTest/R/GuanTestUnif.R | 65 spTest-0.2.4/spTest/R/LuTest.R | 29 spTest-0.2.4/spTest/R/MaityTest.R | 66 spTest-0.2.4/spTest/build/vignette.rds |binary spTest-0.2.4/spTest/inst/doc/spTest-vig.pdf |binary spTest-0.2.4/spTest/man/GuanTestGrid.Rd | 21 spTest-0.2.4/spTest/man/GuanTestUnif.Rd | 54 spTest-0.2.4/spTest/man/LuTest.Rd | 7 spTest-0.2.4/spTest/man/MaityTest.Rd | 56 spTest-0.2.4/spTest/vignettes/figures/fig-dirsemi1-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-dsvar2-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-elev-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-grid-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-heatmap1-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-iso2-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-narccap-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-narccap.eps | 1017 +++------- spTest-0.2.4/spTest/vignettes/figures/fig-narccap2-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-precipdv-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-rain-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-rain1-eps-converted-to.pdf |binary spTest-0.2.4/spTest/vignettes/figures/fig-rain2-eps-converted-to.pdf |binary 28 files changed, 566 insertions(+), 856 deletions(-)
Title: Robust Estimation of the Generalized log Gamma Model
Description: Robust estimation of the generalized log gamma model is provided using Quantile Tau estimator, Weighted Likelihood estimator and Truncated Maximum Likelihood estimator. Functions for regression and censored data are also available.
Author: Claudio Agostinelli <claudio.agostinelli@unitn.it>, Alfio Marazzi <Alfio.Marazzi@chuv.ch>, Victor Yohai <vyohai@uolsinectis.com.ar> and Alex Randriamiharisoa <Alex.Randriamiharisoa@chuv.ch>
Maintainer: Claudio Agostinelli <claudio.agostinelli@unitn.it>
Diff between robustloggamma versions 0.4-31 dated 2015-02-06 and 1.0-1 dated 2016-05-12
robustloggamma-0.4-31/robustloggamma/tests/loggammarob-QTau.R |only robustloggamma-0.4-31/robustloggamma/tests/loggammarob-WL.R |only robustloggamma-0.4-31/robustloggamma/tests/loggammarob-WQTau.R |only robustloggamma-0.4-31/robustloggamma/tests/loggammarob-oneWL.R |only robustloggamma-1.0-1/robustloggamma/DESCRIPTION | 18 - robustloggamma-1.0-1/robustloggamma/MD5 | 99 ++++++-- robustloggamma-1.0-1/robustloggamma/NAMESPACE | 19 + robustloggamma-1.0-1/robustloggamma/R/BiWeights.R |only robustloggamma-1.0-1/robustloggamma/R/FnsemiGLG.R |only robustloggamma-1.0-1/robustloggamma/R/FunctionsNP.R |only robustloggamma-1.0-1/robustloggamma/R/LimitsFunctions.R |only robustloggamma-1.0-1/robustloggamma/R/MLfunctions.R | 37 --- robustloggamma-1.0-1/robustloggamma/R/QnsemiGLG.R |only robustloggamma-1.0-1/robustloggamma/R/Qtaufunctions.R | 19 - robustloggamma-1.0-1/robustloggamma/R/Regfal.R |only robustloggamma-1.0-1/robustloggamma/R/ScoreAndDerivativesCensored.R |only robustloggamma-1.0-1/robustloggamma/R/ScoresAndDerivatives.R | 120 +++++----- robustloggamma-1.0-1/robustloggamma/R/TMLcutoff.R |only robustloggamma-1.0-1/robustloggamma/R/TMLfunctions.R |only robustloggamma-1.0-1/robustloggamma/R/TMLoneCens.R |only robustloggamma-1.0-1/robustloggamma/R/TMLoneJacEta.R |only robustloggamma-1.0-1/robustloggamma/R/WLfunctions.R | 40 --- robustloggamma-1.0-1/robustloggamma/R/WQtauCens.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacenslmrob.ML.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacenslmrob.MM.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacenslmrob.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacenslmrob.S.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacenslmrob.TQTau.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacenslmrob.TWQTau.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacenslmrob.oneTML.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacenslmrob.oneWL.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacensrob.ML.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacensrob.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacensrob.TQTau.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacensrob.TWQTau.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacensrob.oneTML.R |only robustloggamma-1.0-1/robustloggamma/R/loggammacensrob.oneWL.R |only robustloggamma-1.0-1/robustloggamma/R/loggammarob.R | 32 +- robustloggamma-1.0-1/robustloggamma/data/alcoa.rda |binary robustloggamma-1.0-1/robustloggamma/data/drg2000.rda |binary robustloggamma-1.0-1/robustloggamma/data/sqrtloggamma.rda |binary robustloggamma-1.0-1/robustloggamma/inst/CITATION | 52 ++-- robustloggamma-1.0-1/robustloggamma/man/LogGammaDist.Rd | 13 - robustloggamma-1.0-1/robustloggamma/man/alcoa.Rd | 8 robustloggamma-1.0-1/robustloggamma/man/drg2000.Rd | 10 robustloggamma-1.0-1/robustloggamma/man/loggammacenslmrob.Rd |only robustloggamma-1.0-1/robustloggamma/man/loggammacensrob.Rd |only robustloggamma-1.0-1/robustloggamma/man/loggammarob.Rd | 12 - robustloggamma-1.0-1/robustloggamma/man/loggammarob.control.Rd | 63 ++++- robustloggamma-1.0-1/robustloggamma/man/loggammarob.test.Rd | 12 - robustloggamma-1.0-1/robustloggamma/man/loggammarob.wilks.Rd | 6 robustloggamma-1.0-1/robustloggamma/man/summary.loggammarob.Rd | 12 - robustloggamma-1.0-1/robustloggamma/src/FnsemiGLG.f |only robustloggamma-1.0-1/robustloggamma/src/QnsemiGLG.f |only robustloggamma-1.0-1/robustloggamma/src/SPsiKM.f |only robustloggamma-1.0-1/robustloggamma/tests/MLcens-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/MLcensreg-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/MMnpcensreg-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/Snpcensreg-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/TQTau-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/TWQ-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/TWQTau-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacenslmrob.ML.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacenslmrob.MM.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacenslmrob.S.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacenslmrob.oneTML.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacenslmrob.oneWL.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacensrob.ML.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacensrob.TQTatu.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacensrob.TWQTatu.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacensrob.oneTML.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammacensrob.oneWL.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammarob.QTau.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammarob.WL.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammarob.WQTau.R |only robustloggamma-1.0-1/robustloggamma/tests/loggammarob.oneWL.R |only robustloggamma-1.0-1/robustloggamma/tests/oneTMLemp-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/oneTMLregemp-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/oneWLemp-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/oneWLexp-savedvalues.R |only robustloggamma-1.0-1/robustloggamma/tests/oneWLregemp-savedvalues.R |only 81 files changed, 322 insertions(+), 250 deletions(-)
More information about robustloggamma at CRAN
Permanent link
Title: Robust Analysis of High Dimensional Data
Description: A collection of methods for the robust analysis of univariate and
multivariate functional data, possibly in high-dimensional cases, and hence
with attention to computational efficiency and simplicity of use.
Author: Nicholas Tarabelloni [aut, cre],
Ana Arribas-Gil [aut],
Francesca Ieva [aut],
Anna Maria Paganoni [aut],
Juan Romo [aut]
Maintainer: Nicholas Tarabelloni <nicholas.tarabelloni@polimi.it>
Diff between roahd versions 1.0 dated 2016-04-16 and 1.1 dated 2016-05-12
DESCRIPTION | 17 MD5 | 118 +-- NAMESPACE | 8 NEWS.md |only R/correlation.R | 2 R/fData.R | 320 ++++++++ R/fbplot.R | 17 R/outliergram.R | 158 ---- README.md | 88 +- build/vignette.rds |binary inst/doc/Roahd.Rmd | 121 ++- inst/doc/Roahd.html | 1409 +++++++++++++------------------------- man/BD.Rd | 4 man/BD_relative.Rd | 4 man/EI.Rd | 4 man/HI.Rd | 4 man/HRD.Rd | 4 man/MBD.Rd | 3 man/MBD_relative.Rd | 5 man/MEI.Rd | 4 man/MHI.Rd | 4 man/MHRD.Rd | 4 man/area_ordered.Rd | 4 man/area_under_curve.Rd | 15 man/as.mfData.Rd | 4 man/cor_kendall.Rd | 4 man/cor_spearman.Rd | 4 man/cov_fun.Rd |only man/exp_cov_function.Rd | 5 man/fDColorPalette.Rd | 4 man/fData.Rd | 3 man/fbplot.Rd | 14 man/generate_gauss_fdata.Rd | 4 man/generate_gauss_mfdata.Rd | 4 man/max_ordered.Rd | 4 man/maxima.Rd | 4 man/mean.fData.Rd | 5 man/mean.mfData.Rd | 3 man/median_fData.Rd | 4 man/median_mfData.Rd | 3 man/mfData.Rd | 3 man/minima.Rd | 4 man/multiMBD.Rd | 4 man/outliergram.Rd | 5 man/plot.Cov.Rd |only man/plot.fData.Rd | 5 man/plot.mfData.Rd | 3 man/plus-.fData.Rd | 4 man/roahd.Rd | 2 man/set_alpha.Rd | 4 man/sub-.fData.Rd | 4 man/times-.fData.Rd | 6 man/toListOfValues.Rd | 4 man/toRowMatrixForm.Rd | 4 man/unfold.Rd | 3 man/warp.Rd | 4 tests/testthat/Rplots.pdf |only tests/testthat/test_fData.R | 67 + tests/testthat/test_fbplot.R | 6 tests/testthat/test_outliergram.R | 7 vignettes/Roahd.Rmd | 121 ++- vignettes/references.bib | 20 62 files changed, 1416 insertions(+), 1250 deletions(-)
Title: UK National River Flow Archive Data from R
Description: Utility functions to retrieve data from the UK National River Flow
Archive. The package contains R wrappers to the UK NRFA data temporary-API.
There are functions to retrieve stations falling in a bounding box,
to generate a map and extracting time series and general information.
Author: Claudia Vitolo [aut, cre], Matthew Fry [ctb], Wouter Buytaert [ctb]
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>
Diff between rnrfa versions 0.5.1 dated 2016-03-09 and 0.5.3 dated 2016-05-12
DESCRIPTION | 11 +- MD5 | 26 ++++-- NAMESPACE | 9 ++ R/FindTS.R | 6 - R/catalogue.R | 182 ++++++++++++++++++++++++------------------------ R/convertFlow.R |only R/getTS.R | 2 R/plotRainFlow.R | 34 ++++++-- R/plotTrend.R |only R/seasonalAverages.R |only data/stationSummary.rda |binary man/catalogue.Rd | 4 - man/convertFlow.Rd |only man/plotRainFlow.Rd | 13 ++- man/plotTrend.Rd |only man/seasonalAverages.Rd |only man/stationSummary.Rd | 2 17 files changed, 165 insertions(+), 124 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.3) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut],
Tim Keitt [aut],
Barry Rowlingson [aut],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.1-9 dated 2016-05-08 and 1.1-10 dated 2016-05-12
ChangeLog | 18 ++ DESCRIPTION | 8 MD5 | 23 +- R/project.R | 6 configure | 18 +- inst/ChangeLog | 18 ++ inst/SVN_VERSION | 2 inst/doc/OGR_shape_encoding.pdf |binary man/project.Rd | 3 src/inverser.c |only src/projectit.cpp | 15 + tests/test_proj.R | 22 ++ tests/test_proj.Rout.save | 351 +++++++++++++++++++++++++++++++++++++++- 13 files changed, 446 insertions(+), 38 deletions(-)
Title: Printing Results of Statistical Computing in a Publishable Way
Description: Takes the output of statistical tests and transforms it in a
publish-friendly pattern. Currently only APA (American Psychological
Association) style is supported with output to HTML, LaTeX, Markdown and
plain text. It is easily customizable, extendable and can be used well
with 'knitr'. Additionally 'pubprint' offers a memory system that allows
to save and retrieve results of computations.
Author: Rudolf Siegel [aut, cre]
Maintainer: Rudolf Siegel <rs.os@t-online.de>
Diff between pubprint versions 0.1.1 dated 2016-01-28 and 0.2 dated 2016-05-12
pubprint-0.1.1/pubprint/.Rinstignore |only pubprint-0.2/pubprint/DESCRIPTION | 22 pubprint-0.2/pubprint/MD5 | 80 pubprint-0.2/pubprint/NAMESPACE | 1 pubprint-0.2/pubprint/NEWS.md |only pubprint-0.2/pubprint/R/defaults.R | 27 pubprint-0.2/pubprint/R/io.R | 79 pubprint-0.2/pubprint/R/out.R | 59 pubprint-0.2/pubprint/R/out_default.R | 136 - pubprint-0.2/pubprint/R/out_html.R | 216 ++ pubprint-0.2/pubprint/R/out_latex.R | 86 pubprint-0.2/pubprint/R/out_markdown.R | 28 pubprint-0.2/pubprint/R/out_plain.R | 10 pubprint-0.2/pubprint/R/pubprint.R | 19 pubprint-0.2/pubprint/R/style_apa.R | 999 +++++++++-- pubprint-0.2/pubprint/R/style_default.R | 15 pubprint-0.2/pubprint/R/utils.R | 25 pubprint-0.2/pubprint/R/zzz.R |only pubprint-0.2/pubprint/README.md | 20 pubprint-0.2/pubprint/inst/CITATION | 2 pubprint-0.2/pubprint/inst/NEWS.Rd | 11 pubprint-0.2/pubprint/inst/doc/pubprint.R | 17 pubprint-0.2/pubprint/inst/doc/pubprint.Rnw | 65 pubprint-0.2/pubprint/inst/doc/pubprint.pdf |binary pubprint-0.2/pubprint/man/pp_opts.Rd | 14 pubprint-0.2/pubprint/man/pp_opts_out.Rd | 6 pubprint-0.2/pubprint/man/pp_opts_style.Rd | 2 pubprint-0.2/pubprint/man/pprint.Rd | 14 pubprint-0.2/pubprint/man/pubprint-package.Rd | 20 pubprint-0.2/pubprint/man/style.apa.anova.Rd |only pubprint-0.2/pubprint/man/style.apa.bartlett.Rd |only pubprint-0.2/pubprint/man/style.apa.character.Rd |only pubprint-0.2/pubprint/man/style.apa.chisq.Rd |only pubprint-0.2/pubprint/man/style.apa.cor.test.Rd |only pubprint-0.2/pubprint/man/style.apa.df.Rd |only pubprint-0.2/pubprint/man/style.apa.fisher.Rd |only pubprint-0.2/pubprint/man/style.apa.ks.Rd |only pubprint-0.2/pubprint/man/style.apa.numeric.Rd |only pubprint-0.2/pubprint/man/style.apa.p.value.Rd |only pubprint-0.2/pubprint/man/style.apa.shapiro.Rd |only pubprint-0.2/pubprint/man/style.apa.summary.aovlist.Rd |only pubprint-0.2/pubprint/man/style.apa.summary.lm.beta.coeff.Rd |only pubprint-0.2/pubprint/man/style.apa.summary.lm.coeff.Rd |only pubprint-0.2/pubprint/man/style.apa.summary.lm.equation.Rd |only pubprint-0.2/pubprint/man/style.apa.summary.lm.model.Rd |only pubprint-0.2/pubprint/man/style.apa.t.test.Rd |only pubprint-0.2/pubprint/man/toClipboard.Rd |only pubprint-0.2/pubprint/tests/testthat/test-io.R | 18 pubprint-0.2/pubprint/tests/testthat/test-out_all.R | 301 +-- pubprint-0.2/pubprint/tests/testthat/test-style_apa.R | 97 - pubprint-0.2/pubprint/tests/testthat/test-style_default.R | 22 pubprint-0.2/pubprint/vignettes/pubprint.Rnw | 65 52 files changed, 1776 insertions(+), 700 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox for personality, psychometrics and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multi-levels include within and between group statistics, including correlations and factor analysis. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometrics as well as publications in personality research. For more information, see the personality-project.org/r webpage.
Author: William Revelle <revelle@northwestern.edu>
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 1.5.8 dated 2015-08-30 and 1.6.4 dated 2016-05-12
DESCRIPTION | 8 MD5 | 200 ++++++++--------- NAMESPACE | 7 R/alpha.R | 90 +++++-- R/bi.bars.R | 28 +- R/cor.ci.R | 5 R/cor.plot.R | 38 ++- R/cortest.bartlett.R | 3 R/cosinor.R | 2 R/error.bars.R | 26 +- R/fa.R | 8 R/fa.extension.R | 2 R/fa.multi.R |only R/fa.parallel.R | 8 R/factor.congruence.R | 29 ++ R/factor.scores.R | 46 ++- R/factor.stats.R | 1 R/mediate.r | 496 +++++++++++++++++++++++++------------------ R/omega.diagram.R | 6 R/pairs.panels.R | 5 R/principal.R | 2 R/print.psych.R | 47 ---- R/read.clipboard.R | 8 R/residuals.psych.R | 65 ++++- R/schmid.R | 6 R/score.irt.poly.R | 7 R/score.multiple.choice.R | 7 R/set.cor.R | 19 - R/splitHalf.R | 4 R/stats.by.r | 17 + build/vignette.rds |binary data/Bechtoldt.1.rda |binary data/Bechtoldt.2.rda |binary data/Bechtoldt.rda |binary data/Dwyer.rda |binary data/Gleser.rda |binary data/Gorsuch.rda |binary data/Harman.5.rda |binary data/Harman.8.rda |binary data/Harman.political.rda |binary data/Harman.rda |binary data/Holzinger.9.rda |binary data/Holzinger.rda |binary data/Reise.rda |binary data/Schmid.rda |binary data/Thurstone.33.rda |binary data/Thurstone.rda |binary data/Tucker.rda |binary data/ability.rda |binary data/affect.rda |binary data/bfi.dictionary.rda |binary data/bfi.rda |binary data/blot.rda |binary data/bock.rda |binary data/burt.rda |binary data/cities.rda |binary data/cubits.rda |binary data/cushny.rda |binary data/epi.bfi.rda |binary data/epi.dictionary.rda |binary data/epi.rda |binary data/galton.rda |binary data/heights.rda |binary data/income.rda |binary data/iqitems.rda |binary data/msq.rda |binary data/neo.rda |binary data/peas.rda |binary data/sat.act.rda |binary data/vegetables.rda |binary data/withinBetween.rda |binary inst/CITATION | 8 inst/NEWS.Rd | 55 ++++ inst/doc/overview.R | 4 inst/doc/overview.Rnw | 10 inst/doc/overview.pdf |binary inst/doc/psych_for_sem.pdf |binary man/alpha.Rd | 17 + man/best.scales.Rd | 9 man/bi.bars.Rd | 3 man/cluster.cor.Rd | 41 ++- man/cor.ci.Rd | 4 man/cor.plot.Rd | 9 man/cortest.bartlett.Rd | 16 + man/cosinor.Rd | 18 + man/error.bars.Rd | 38 ++- man/fa.Rd | 12 - man/faMulti.Rd |only man/factor.congruence.Rd | 8 man/guttman.Rd | 5 man/make.keys.Rd | 6 man/mediate.Rd | 56 +++- man/omega.Rd | 57 ++++ man/omega.graph.Rd | 5 man/pairs.panels.Rd | 14 + man/plot.psych.Rd | 20 + man/principal.Rd | 17 - man/read.clipboard.Rd | 4 man/score.multiple.choice.Rd | 4 man/set.cor.Rd | 11 man/super.matrix.Rd | 2 vignettes/overview.Rnw | 10 102 files changed, 1070 insertions(+), 583 deletions(-)
Title: Probability-Scale Residuals and Residual Correlations
Description: Computes probability-scale residuals and residual correlations
for continuous, ordinal, binary, count, and time-to-event data.
Author: Charles Dupont, Jeffrey Horner, Chun Li, Qi Liu, Bryan Shepherd
Maintainer: Bryan Shepherd <bryan.shepherd@VANDERBILT.EDU>
Diff between PResiduals versions 0.2-2 dated 2016-05-05 and 0.2-3 dated 2016-05-12
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Mixed Model ANOVA and Statistics for Education
Description: The main functions perform mixed models analysis by least squares or REML by adding the function r() to formulas of lm and glm. A collection of text-book statistics for higher education is also included, e.g. modifications of the functions lm, glm and associated summaries from the package stats.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [ctb],
R-Core [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between mixlm versions 1.1.2 dated 2016-04-19 and 1.1.3 dated 2016-05-12
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/statistics.R | 3 +-- 3 files changed, 7 insertions(+), 8 deletions(-)
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov chains (DTMC) more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of DTMC proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav Yalamanchi [aut], Mildenberger Thoralf [ctb], Deepak Yadav [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.4.3.1 dated 2016-03-05 and 0.4.4 dated 2016-05-12
ChangeLog | 5 DESCRIPTION | 10 MD5 | 46 - NEWS | 8 R/0_classesAndMethods.R | 21 R/1_functions4Fitting.R | 179 +++- R/2_probabilistic.R | 27 R/RcppExports.R | 8 README.md | 3 inst/CITATION | 6 inst/doc/an_introduction_to_markovchain_package.R | 216 +++-- inst/doc/an_introduction_to_markovchain_package.Rnw | 44 - inst/doc/an_introduction_to_markovchain_package.pdf |binary inst/doc/markovchainCrashIntro.Rmd | 59 - inst/doc/markovchainCrashIntro.pdf |binary man/markovchain-class.Rd | 2 man/markovchain-package.Rd | 4 man/randomSampler.Rd | 9 src/1_functions4Fitting.cpp | 118 ++ src/RcppExports.cpp | 27 tests/testthat/testStatesClassification.R |only vignettes/an_introduction_to_markovchain_package.Rnw | 44 - vignettes/markovchainBiblio.bib | 776 +++++++++---------- vignettes/markovchainCrashIntro.Rmd | 59 - vignettes/mystyles.sty |only 25 files changed, 1043 insertions(+), 628 deletions(-)
Title: Financial and Actuarial Mathematics for Life Contingencies
Description: Classes and methods that allow the user to manage life table,
actuarial tables (also multiple decrement tables). Moreover, functions to easily
perform demographic, financial and actuarial mathematics on life contingencies
insurances calculations are contained therein.
Author: Giorgio Alfredo Spedicato [cre,aut], Reinhold Kainhofer [ctb], Kevin J.
Owens [ctb], Christophe Dutang [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between lifecontingencies versions 1.1.10 dated 2015-10-01 and 1.1.12 dated 2016-05-12
lifecontingencies-1.1.10/lifecontingencies/vignettes/introToLifecontingencies_files |only lifecontingencies-1.1.12/lifecontingencies/ChangeLog | 2 lifecontingencies-1.1.12/lifecontingencies/DESCRIPTION | 17 lifecontingencies-1.1.12/lifecontingencies/MD5 | 46 +- lifecontingencies-1.1.12/lifecontingencies/NEWS | 6 lifecontingencies-1.1.12/lifecontingencies/R/3_demographicFunctions.R | 175 ++++++---- lifecontingencies-1.1.12/lifecontingencies/README.md | 3 lifecontingencies-1.1.12/lifecontingencies/build/vignette.rds |binary lifecontingencies-1.1.12/lifecontingencies/data/demoIta_new.rda |only lifecontingencies-1.1.12/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.R | 2 lifecontingencies-1.1.12/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.Rnw | 2 lifecontingencies-1.1.12/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.pdf |binary lifecontingencies-1.1.12/lifecontingencies/inst/doc/introToLifecontingencies.Rmd | 5 lifecontingencies-1.1.12/lifecontingencies/inst/doc/introToLifecontingencies.pdf |binary lifecontingencies-1.1.12/lifecontingencies/man/demoIta.Rd | 22 - lifecontingencies-1.1.12/lifecontingencies/man/lifecontingencies-package.Rd | 4 lifecontingencies-1.1.12/lifecontingencies/man/multidecrins.Rd | 2 lifecontingencies-1.1.12/lifecontingencies/man/mx2qx.Rd | 6 lifecontingencies-1.1.12/lifecontingencies/man/qx2mx.Rd | 4 lifecontingencies-1.1.12/lifecontingencies/man/rmdt.Rd | 5 lifecontingencies-1.1.12/lifecontingencies/tests/testthat/testDemography.R | 4 lifecontingencies-1.1.12/lifecontingencies/vignettes/an_introduction_to_lifecontingencies_package.Rnw | 2 lifecontingencies-1.1.12/lifecontingencies/vignettes/introToLifecontingencies.Rmd | 5 lifecontingencies-1.1.12/lifecontingencies/vignettes/mystyles.sty |only 24 files changed, 187 insertions(+), 125 deletions(-)
More information about lifecontingencies at CRAN
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More information about googleAnalyticsR at CRAN
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Title: Tools for Analyzing MCMC Simulations from Bayesian Inference
Description: Tools for assessing and diagnosing convergence of
Markov Chain Monte Carlo simulations, as well as for graphically display
results from full MCMC analysis. The package also facilitates the graphical
interpretation of models by providing flexible functions to plot the
results against observed variables.
Author: Xavier Fernández i MarÃn <xavier.fim@gmail.com>
Maintainer: Xavier Fernández i MarÃn <xavier.fim@gmail.com>
Diff between ggmcmc versions 0.8 dated 2016-03-14 and 1.0 dated 2016-05-12
ggmcmc-0.8/ggmcmc/inst/doc/ggmcmc-jss.R |only ggmcmc-0.8/ggmcmc/inst/doc/ggmcmc-jss.Rnw |only ggmcmc-0.8/ggmcmc/inst/doc/ggmcmc-jss.pdf |only ggmcmc-0.8/ggmcmc/vignettes/ggmcmc-jss.Rnw |only ggmcmc-1.0/ggmcmc/DESCRIPTION | 8 ggmcmc-1.0/ggmcmc/MD5 | 95 ++--- ggmcmc-1.0/ggmcmc/NEWS | 41 ++ ggmcmc-1.0/ggmcmc/R/ggmcmc.R | 428 +++++++++++++++++--------- ggmcmc-1.0/ggmcmc/R/ggs.R | 49 ++ ggmcmc-1.0/ggmcmc/R/ggs_Rhat.R | 7 ggmcmc-1.0/ggmcmc/R/ggs_autocorrelation.R | 1 ggmcmc-1.0/ggmcmc/R/ggs_caterpillar.R | 3 ggmcmc-1.0/ggmcmc/R/ggs_compare_partial.R | 1 ggmcmc-1.0/ggmcmc/R/ggs_crosscorrelation.R | 1 ggmcmc-1.0/ggmcmc/R/ggs_density.R | 1 ggmcmc-1.0/ggmcmc/R/ggs_geweke.R | 5 ggmcmc-1.0/ggmcmc/R/ggs_histogram.R | 7 ggmcmc-1.0/ggmcmc/R/ggs_pairs.R | 1 ggmcmc-1.0/ggmcmc/R/ggs_ppmean.R | 1 ggmcmc-1.0/ggmcmc/R/ggs_ppsd.R | 1 ggmcmc-1.0/ggmcmc/R/ggs_rocplot.R | 8 ggmcmc-1.0/ggmcmc/R/ggs_running.R | 1 ggmcmc-1.0/ggmcmc/R/ggs_separation.R | 4 ggmcmc-1.0/ggmcmc/R/ggs_traceplot.R | 1 ggmcmc-1.0/ggmcmc/R/globals.R | 5 ggmcmc-1.0/ggmcmc/build/vignette.rds |binary ggmcmc-1.0/ggmcmc/inst/CITATION | 23 + ggmcmc-1.0/ggmcmc/inst/doc/using_ggmcmc.R | 6 ggmcmc-1.0/ggmcmc/inst/doc/using_ggmcmc.Rmd | 26 + ggmcmc-1.0/ggmcmc/inst/doc/using_ggmcmc.html | 144 +++----- ggmcmc-1.0/ggmcmc/inst/doc/v70i09.R |only ggmcmc-1.0/ggmcmc/inst/doc/v70i09.Rnw |only ggmcmc-1.0/ggmcmc/inst/doc/v70i09.pdf |only ggmcmc-1.0/ggmcmc/man/ac.Rd | 7 ggmcmc-1.0/ggmcmc/man/ggmcmc.Rd | 6 ggmcmc-1.0/ggmcmc/man/ggs.Rd | 5 ggmcmc-1.0/ggmcmc/man/ggs_Rhat.Rd | 7 ggmcmc-1.0/ggmcmc/man/ggs_caterpillar.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_compare_partial.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_crosscorrelation.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_density.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_geweke.Rd | 5 ggmcmc-1.0/ggmcmc/man/ggs_histogram.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_pairs.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_ppmean.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_ppsd.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_running.Rd | 3 ggmcmc-1.0/ggmcmc/man/ggs_separation.Rd | 6 ggmcmc-1.0/ggmcmc/man/ggs_traceplot.Rd | 3 ggmcmc-1.0/ggmcmc/man/roc_calc.Rd | 3 ggmcmc-1.0/ggmcmc/vignettes/using_ggmcmc.Rmd | 26 + ggmcmc-1.0/ggmcmc/vignettes/v70i09.Rnw |only ggmcmc-1.0/ggmcmc/vignettes/v70i09.bib |only 53 files changed, 639 insertions(+), 324 deletions(-)
Title: Building Diversity Models from Multiple Species Occupancy Models
Description: Predictions of alpha diversity are fitted from presence data, first abundance is modeled from occupancy models and then, several diversity indices are calculated and finally GLM models are used to predict diversity in different environments and select priority areas.
Author: Derek Corcoran [aut, cre],
Dylan Kesler [aut],
Elisabeth Webb [aut],
Nicole Michel [ctb]
Maintainer: Derek Corcoran <derek.corcoran.barrios@gmail.com>
Diff between DiversityOccupancy versions 1.0.2 dated 2016-03-16 and 1.0.3 dated 2016-05-12
DiversityOccupancy-1.0.2/DiversityOccupancy/data/BatOccu.rda |only DiversityOccupancy-1.0.2/DiversityOccupancy/data/Dailycov.rda |only DiversityOccupancy-1.0.2/DiversityOccupancy/data/plumas.stack.rda |only DiversityOccupancy-1.0.2/DiversityOccupancy/data/sampling.cov.rda |only DiversityOccupancy-1.0.2/DiversityOccupancy/man/BatOccu.Rd |only DiversityOccupancy-1.0.2/DiversityOccupancy/man/Dailycov.Rd |only DiversityOccupancy-1.0.2/DiversityOccupancy/man/plumas.stack.Rd |only DiversityOccupancy-1.0.2/DiversityOccupancy/man/sampling.cov.Rd |only DiversityOccupancy-1.0.3/DiversityOccupancy/DESCRIPTION | 8 DiversityOccupancy-1.0.3/DiversityOccupancy/MD5 | 44 - DiversityOccupancy-1.0.3/DiversityOccupancy/R/Datasets.R | 255 ---------- DiversityOccupancy-1.0.3/DiversityOccupancy/R/DiversityOccu.R | 146 ++--- DiversityOccupancy-1.0.3/DiversityOccupancy/R/Plotfunctions.R | 71 +- DiversityOccupancy-1.0.3/DiversityOccupancy/data/Birdstack.rda |only DiversityOccupancy-1.0.3/DiversityOccupancy/data/IslandBirds.rda |binary DiversityOccupancy-1.0.3/DiversityOccupancy/data/siteCov.rda |binary DiversityOccupancy-1.0.3/DiversityOccupancy/inst/doc/my-vignette.html | 16 DiversityOccupancy-1.0.3/DiversityOccupancy/man/Birdstack.Rd |only DiversityOccupancy-1.0.3/DiversityOccupancy/man/IslandBirds.Rd | 46 - DiversityOccupancy-1.0.3/DiversityOccupancy/man/batchoccu.Rd | 30 - DiversityOccupancy-1.0.3/DiversityOccupancy/man/diversity.predict.Rd | 36 - DiversityOccupancy-1.0.3/DiversityOccupancy/man/diversityoccu.Rd | 18 DiversityOccupancy-1.0.3/DiversityOccupancy/man/model.diversity.Rd | 35 - DiversityOccupancy-1.0.3/DiversityOccupancy/man/occupancy.predict.Rd | 23 DiversityOccupancy-1.0.3/DiversityOccupancy/man/responseplot.abund.Rd | 24 DiversityOccupancy-1.0.3/DiversityOccupancy/man/responseplot.diver.Rd | 24 DiversityOccupancy-1.0.3/DiversityOccupancy/man/responseplot.occu.Rd | 23 DiversityOccupancy-1.0.3/DiversityOccupancy/man/siteCov.Rd | 7 28 files changed, 252 insertions(+), 554 deletions(-)
More information about DiversityOccupancy at CRAN
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Title: Automated C Code Generation for Use with the 'deSolve' and
'bvpSolve' Packages
Description: Generates all necessary C functions allowing the user to work with
the compiled-code interface of ode() and bvptwp(). The implementation supports
"forcings" and "events". Also provides functions to symbolically compute
Jacobians, sensitivity equations and adjoint sensitivities being the basis for
sensitivity analysis.
Author: Daniel Kaschek
Maintainer: Daniel Kaschek <daniel.kaschek@physik.uni-freiburg.de>
Diff between cOde versions 0.2.1 dated 2016-03-09 and 0.2.2 dated 2016-05-12
DESCRIPTION | 15 ++++++++---- MD5 | 54 +++++++++++++++++++++++---------------------- NAMESPACE | 2 - R/cOde.R | 11 +++++---- R/derivedEquations.R | 2 + data |only inst/examples/example1.R | 10 +++++--- inst/examples/example2.R | 22 +++++++++++------- inst/examples/example2_2.R | 13 ++++++---- inst/examples/example3.R | 26 ++++++++++++++------- inst/examples/example4.R | 23 +++++++++++-------- inst/examples/example5.R | 19 ++++++++++----- man/adjointSymb.Rd | 25 ++++++++++++-------- man/bvptwpC.Rd | 25 ++++++++++++-------- man/forcData.Rd | 2 - man/funC.Rd | 12 +++++----- man/getSymbols.Rd | 2 - man/jacobianSymb.Rd | 2 - man/loadDLL.Rd | 2 - man/odeC.Rd | 12 +++++----- man/oxygenData.Rd | 4 +-- man/prodSymb.Rd | 2 - man/reduceSensitivities.Rd | 2 - man/replaceOperation.Rd | 2 - man/replaceSymbols.Rd | 2 - man/sensitivitiesSymb.Rd | 54 ++++++++++++++++++++++++++++----------------- man/setForcings.Rd | 4 +-- man/sumSymb.Rd | 2 - 28 files changed, 208 insertions(+), 143 deletions(-)
Title: Interface to Climatic Research Unit Time-Series Version 3.21
Data
Description: Functions for reading in and manipulating CRU TS3.21: Climatic
Research Unit (CRU) Time-Series (TS) Version 3.21 data.
Author: Benjamin M. Taylor
Additional contributions
Bikash Parida
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between cruts versions 0.2 dated 2016-01-11 and 0.3 dated 2016-05-12
DESCRIPTION | 12 ++++++++---- MD5 | 17 +++++++++-------- NAMESPACE | 2 +- NEWS |only R/import-export.R | 5 ++++- man/cruts-package.Rd | 5 ++--- man/cruts2poly.Rd | 2 +- man/cruts2raster.Rd | 2 +- man/extractNetCDF.Rd | 2 +- man/getAnomaly.Rd | 2 +- 10 files changed, 28 insertions(+), 21 deletions(-)
Title: Bayesian Additive Regression Trees
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner and Justin Bleich (R package)
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachine versions 1.2.2 dated 2016-03-24 and 1.2.3 dated 2016-05-12
CHANGELOG | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/bart_package_builders.R | 2 +- R/bart_package_inits.R | 2 +- R/bart_package_predicts.R | 2 +- inst/doc/bartMachine.pdf |binary 7 files changed, 16 insertions(+), 13 deletions(-)