Title: Dynamic Generation of Scientific Reports
Description: The RSP markup language makes any text-based document come alive. RSP provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. 'Today's date is <%=Sys.Date()%>'. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. Functions rstring() and rcat() make it easy to process RSP strings, rsource() sources an RSP file as it was an R script, while rfile() compiles it (even online) into its final output format, e.g. rfile('report.tex.rsp') generates 'report.pdf' and rfile('report.md.rsp') generates 'report.html'. RSP is ideal for self-contained scientific reports and R package vignettes. It's easy to use - if you know how to write an R script, you'll be up and running within minutes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.rsp versions 0.21.0 dated 2015-12-19 and 0.30.0 dated 2016-05-15
R.rsp-0.21.0/R.rsp/R/compileRsp0.R |only R.rsp-0.21.0/R.rsp/R/epsDev.DEPRECATED.R |only R.rsp-0.21.0/R.rsp/R/hexToInt.R |only R.rsp-0.21.0/R.rsp/R/importRsp.R |only R.rsp-0.21.0/R.rsp/R/parseRsp.R |only R.rsp-0.21.0/R.rsp/R/rsp.R |only R.rsp-0.21.0/R.rsp/R/rspCapture.R |only R.rsp-0.21.0/R.rsp/R/rspToHtml.R |only R.rsp-0.21.0/R.rsp/R/rsptex.R |only R.rsp-0.21.0/R.rsp/R/sourceAllRsp.R |only R.rsp-0.21.0/R.rsp/R/sourceRsp.R |only R.rsp-0.21.0/R.rsp/R/sourceRspV2.R |only R.rsp-0.21.0/R.rsp/R/translateRsp.R |only R.rsp-0.21.0/R.rsp/R/translateRspV1.R |only R.rsp-0.21.0/R.rsp/R/urlDecode.R |only R.rsp-0.21.0/R.rsp/exec/rsource |only R.rsp-0.21.0/R.rsp/exec/rsource.bat |only R.rsp-0.30.0/R.rsp/DESCRIPTION | 18 R.rsp-0.30.0/R.rsp/MD5 | 163 R.rsp-0.30.0/R.rsp/NAMESPACE | 52 R.rsp-0.30.0/R.rsp/NEWS | 13 R.rsp-0.30.0/R.rsp/R/999.NonDocumentedObjects.R | 1 R.rsp-0.30.0/R.rsp/R/DEPRECATED.compileRsp0.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.hexToInt.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.importRsp.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.parseRsp.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.rsp.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.rspCapture.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.rspToHtml.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.rsptex.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.sourceAllRsp.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.sourceRsp.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.sourceRspV2.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.translateRsp.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.translateRspV1.R |only R.rsp-0.30.0/R.rsp/R/DEPRECATED.urlDecode.R |only R.rsp-0.30.0/R.rsp/R/HttpDaemon.R | 1896 +++++----- R.rsp-0.30.0/R.rsp/R/HttpDaemon.processRsp.R | 29 R.rsp-0.30.0/R.rsp/R/RspRSourceCode.R | 604 +-- R.rsp-0.30.0/R.rsp/R/buildVignette.R | 4 R.rsp-0.30.0/R.rsp/R/compileAsciiDoc.R | 1 R.rsp-0.30.0/R.rsp/R/compileMarkdown.R | 26 R.rsp-0.30.0/R.rsp/R/rcat.R | 2 R.rsp-0.30.0/R.rsp/R/rclean.R | 2 R.rsp-0.30.0/R.rsp/R/rcode.R | 2 R.rsp-0.30.0/R.rsp/R/rcompile.R | 2 R.rsp-0.30.0/R.rsp/R/rfile.R | 2 R.rsp-0.30.0/R.rsp/R/rstring.R | 2 R.rsp-0.30.0/R.rsp/R/xweavetangle.R | 8 R.rsp-0.30.0/R.rsp/build/vignette.rds |binary R.rsp-0.30.0/R.rsp/exec/rcode |only R.rsp-0.30.0/R.rsp/exec/rcode.bat |only R.rsp-0.30.0/R.rsp/inst/doc/Dynamic_document_creation_using_RSP.pdf |binary R.rsp-0.30.0/R.rsp/inst/doc/RSP_intro.html | 410 -- R.rsp-0.30.0/R.rsp/inst/doc/RSP_refcard.pdf |binary R.rsp-0.30.0/R.rsp/inst/doc/R_packages-LaTeX_vignettes.pdf |binary R.rsp-0.30.0/R.rsp/inst/doc/R_packages-RSP_vignettes.html | 2 R.rsp-0.30.0/R.rsp/inst/doc/R_packages-Vignettes_prior_to_R300.pdf |binary R.rsp-0.30.0/R.rsp/inst/rsp/src/simpleFooter.html.rsp | 2 R.rsp-0.30.0/R.rsp/inst/rsp/src/simpleHeader.html.rsp | 2 R.rsp-0.30.0/R.rsp/man/FileRspResponse.Rd | 2 R.rsp-0.30.0/R.rsp/man/HtmlRspLanguage.Rd | 2 R.rsp-0.30.0/R.rsp/man/HttpDaemon.Rd | 2 R.rsp-0.30.0/R.rsp/man/HttpDaemonRspResponse.Rd | 2 R.rsp-0.30.0/R.rsp/man/HttpRequest.Rd | 2 R.rsp-0.30.0/R.rsp/man/Non-documented_objects.Rd | 1 R.rsp-0.30.0/R.rsp/man/R.rsp-package.Rd | 4 R.rsp-0.30.0/R.rsp/man/RRspPackage.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspCode.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspCodeChunk.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspComment.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspConstruct.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspCutDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspDocument.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspErrorDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspEvalDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspException.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspIfDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspIncludeDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspLanguage.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspMetaDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspPage.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspPageDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspResponse.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspUnknownDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspUnparsedDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/RspVariableDirective.Rd | 2 R.rsp-0.30.0/R.rsp/man/compileAsciiDoc.Rd | 1 R.rsp-0.30.0/R.rsp/man/importRsp.Rd | 2 R.rsp-0.30.0/R.rsp/man/parseRsp.Rd | 2 R.rsp-0.30.0/R.rsp/man/processRsp.HttpDaemon.Rd | 11 R.rsp-0.30.0/R.rsp/man/rsp.Rd | 9 R.rsp-0.30.0/R.rsp/man/rspToHtml.Rd | 2 R.rsp-0.30.0/R.rsp/man/rsptex.Rd | 2 R.rsp-0.30.0/R.rsp/man/sourceAllRsp.Rd | 9 R.rsp-0.30.0/R.rsp/man/sourceRsp.Rd | 9 R.rsp-0.30.0/R.rsp/man/translateRsp.Rd | 2 R.rsp-0.30.0/R.rsp/man/translateRspV1.Rd | 2 99 files changed, 1621 insertions(+), 1730 deletions(-)
Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here the circlize package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of this package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
circlize gives users more convenience and freedom to design figures for
better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between circlize versions 0.3.6 dated 2016-04-23 and 0.3.7 dated 2016-05-15
DESCRIPTION | 8 - MD5 | 26 +-- NAMESPACE | 128 +++++++++--------- NEWS | 9 + R/chordDiagram.R | 153 +++++++++++++++------- inst/doc/circlize.pdf |binary inst/doc/circular_phylogenetic_tree.pdf |binary inst/doc/circular_visualization_of_matrix.pdf |binary inst/doc/genomic_plot.pdf |binary inst/doc/interesting_graphics.pdf |binary inst/doc/visualize_relations_by_chord_diagram.pdf |binary man/chordDiagram.rd | 17 ++ man/chordDiagramFromDataFrame.rd | 9 + man/chordDiagramFromMatrix.rd | 9 + 14 files changed, 229 insertions(+), 130 deletions(-)
Title: ARTFIMA Model Estimation
Description: Fit and simulate ARTFIMA. Theoretical autocovariance function and spectral density function for stationary ARTFIMA.
Author: A. I. McLeod, Mark M. Meerschaert, Farzad Sabzikar
Maintainer: A.I. McLeod <aimcleod@uwo.ca>
Diff between artfima versions 1.2 dated 2016-01-22 and 1.3 dated 2016-05-15
artfima-1.2/artfima/R/artSim.R |only artfima-1.2/artfima/R/sdfartfima.R |only artfima-1.2/artfima/man/InvertibleQ.Rd |only artfima-1.2/artfima/man/artSim.Rd |only artfima-1.2/artfima/man/sdfartfima.Rd |only artfima-1.3/artfima/DESCRIPTION | 10 - artfima-1.3/artfima/MD5 | 42 ++-- artfima-1.3/artfima/NAMESPACE | 23 +- artfima-1.3/artfima/NEWS | 12 + artfima-1.3/artfima/R/Periodogram.R |only artfima-1.3/artfima/R/artfima.R | 251 ++++++++++++++++---------- artfima-1.3/artfima/R/artfimaSDF.R |only artfima-1.3/artfima/R/artsim.R |only artfima-1.3/artfima/R/bestmodels.R |only artfima-1.3/artfima/R/plot.artfima.R |only artfima-1.3/artfima/R/print.artfima.R | 17 - artfima-1.3/artfima/R/summary.bestmodels.R |only artfima-1.3/artfima/R/tseg.R |only artfima-1.3/artfima/build/partial.rdb |binary artfima-1.3/artfima/data/eaglecol.rda |only artfima-1.3/artfima/man/Periodogram.Rd |only artfima-1.3/artfima/man/SB32.Rd | 2 artfima-1.3/artfima/man/artfima.Rd | 22 +- artfima-1.3/artfima/man/artfimaSDF.Rd |only artfima-1.3/artfima/man/artsim.Rd |only artfima-1.3/artfima/man/bestModels.Rd |only artfima-1.3/artfima/man/best_glp_models.Rd |only artfima-1.3/artfima/man/eaglecol.Rd |only artfima-1.3/artfima/man/plot.artfima.Rd |only artfima-1.3/artfima/man/print.artfima.Rd | 10 - artfima-1.3/artfima/man/summary.bestmodels.Rd |only artfima-1.3/artfima/man/tacvfARTFIMA.Rd | 40 +++- artfima-1.3/artfima/man/tseg.Rd |only 33 files changed, 281 insertions(+), 148 deletions(-)
Title: R Interface to the Yacas Computer Algebra System
Description: An interface to the yacas computer algebra system.
Author: Rob Goedman <goedman@mac.com>, Gabor Grothendieck <ggrothendieck@gmail.com>, Søren Højsgaard <sorenh@math.aau.dk>, Ayal Pinkus <apinkus@xs4all.nl>, Grzegorz Mazur <teoretyk@gmail.com>
Maintainer: G. Grothendieck <ggrothendieck@gmail.com>
Diff between Ryacas versions 0.2-12.1 dated 2014-09-14 and 0.3-1 dated 2016-05-15
Ryacas-0.2-12.1/Ryacas/INSTALL |only Ryacas-0.2-12.1/Ryacas/NEWS |only Ryacas-0.2-12.1/Ryacas/R/sym.R |only Ryacas-0.2-12.1/Ryacas/R/yacas.symbol.R |only Ryacas-0.2-12.1/Ryacas/R/yacasInstall.R |only Ryacas-0.2-12.1/Ryacas/R/zzz.R |only Ryacas-0.2-12.1/Ryacas/THANKS |only Ryacas-0.2-12.1/Ryacas/inst/ANNOUNCE |only Ryacas-0.2-12.1/Ryacas/inst/doc/Ryacas-raw.R |only Ryacas-0.2-12.1/Ryacas/inst/yacdir |only Ryacas-0.2-12.1/Ryacas/man/runYacas.Rd |only Ryacas-0.2-12.1/Ryacas/man/yacasInstall.Rd |only Ryacas-0.2-12.1/Ryacas/vignettes/Ryacas.tex |only Ryacas-0.3-1/Ryacas/DESCRIPTION | 25 Ryacas-0.3-1/Ryacas/MD5 | 371 ++++- Ryacas-0.3-1/Ryacas/NAMESPACE | 74 + Ryacas-0.3-1/Ryacas/R/Expr.R | 6 Ryacas-0.3-1/Ryacas/R/OpenMath2R.R | 2 Ryacas-0.3-1/Ryacas/R/RcppExports.R |only Ryacas-0.3-1/Ryacas/R/Sym2.R |only Ryacas-0.3-1/Ryacas/R/yacas.R | 635 +++----- Ryacas-0.3-1/Ryacas/README.md |only Ryacas-0.3-1/Ryacas/build/vignette.rds |binary Ryacas-0.3-1/Ryacas/demo/00Index | 10 Ryacas-0.3-1/Ryacas/demo/Ryacas-Expr.R |only Ryacas-0.3-1/Ryacas/demo/Ryacas-PrettyPrinter.R | 6 Ryacas-0.3-1/Ryacas/demo/Ryacas.R | 144 +- Ryacas-0.3-1/Ryacas/inst/NEWS |only Ryacas-0.3-1/Ryacas/inst/THANKS |only Ryacas-0.3-1/Ryacas/inst/VERSION |only Ryacas-0.3-1/Ryacas/inst/WISHLIST | 66 Ryacas-0.3-1/Ryacas/inst/doc/Ryacas.Rnw | 2 Ryacas-0.3-1/Ryacas/inst/doc/Ryacas.pdf |binary Ryacas-0.3-1/Ryacas/inst/yacas |only Ryacas-0.3-1/Ryacas/man/Eval.Rd | 6 Ryacas-0.3-1/Ryacas/man/yacas.Rd | 152 -- Ryacas-0.3-1/Ryacas/man/yacas_evaluate.Rd |only Ryacas-0.3-1/Ryacas/man/yacmode.Rd | 72 - Ryacas-0.3-1/Ryacas/src |only Ryacas-0.3-1/Ryacas/tests |only Ryacas-0.3-1/Ryacas/vignettes/Ryacas-raw | 1703 ++++++++++++------------ Ryacas-0.3-1/Ryacas/vignettes/Ryacas-raw.tex | 168 -- Ryacas-0.3-1/Ryacas/vignettes/Ryacas.Rnw | 2 43 files changed, 1802 insertions(+), 1642 deletions(-)
Title: Kiener Distributions and Fat Tails in Finance
Description: Kiener distributions K1, K2, K3, K4 and K7 to characterize
distributions with left and right, symmetric or asymmetric fat tails in market
finance, neuroscience and other disciplines. Two algorithms to estimate with
a high accuracy distribution parameters, quantiles, value-at-risk and expected
shortfall. Include power hyperbolas and power hyperbolic functions.
Author: Patrice Kiener
Maintainer: Patrice Kiener <fattailsr@inmodelia.com>
Diff between FatTailsR versions 1.6-0 dated 2016-02-20 and 1.7-0 dated 2016-05-15
FatTailsR-1.6-0/FatTailsR/R/j_moments.R |only FatTailsR-1.6-0/FatTailsR/R/k_tailskiener.R |only FatTailsR-1.6-0/FatTailsR/R/l_estimation.R |only FatTailsR-1.6-0/FatTailsR/R/n_estimation2.R |only FatTailsR-1.6-0/FatTailsR/R/o_regression.R |only FatTailsR-1.7-0/FatTailsR/DESCRIPTION | 20 FatTailsR-1.7-0/FatTailsR/MD5 | 67 - FatTailsR-1.7-0/FatTailsR/NAMESPACE | 29 FatTailsR-1.7-0/FatTailsR/NEWS | 38 FatTailsR-1.7-0/FatTailsR/R/a_FatTailsR-package.R | 48 FatTailsR-1.7-0/FatTailsR/R/b_data.R | 256 ++++- FatTailsR-1.7-0/FatTailsR/R/e_conversion.R | 1124 +++++++++++----------- FatTailsR-1.7-0/FatTailsR/R/f_kiener1.R | 22 FatTailsR-1.7-0/FatTailsR/R/g_kiener2.R | 23 FatTailsR-1.7-0/FatTailsR/R/h_kiener3.R | 23 FatTailsR-1.7-0/FatTailsR/R/i_kiener4.R | 23 FatTailsR-1.7-0/FatTailsR/R/j_kiener7.R |only FatTailsR-1.7-0/FatTailsR/R/k_kienerES.R |only FatTailsR-1.7-0/FatTailsR/R/l_moments.R |only FatTailsR-1.7-0/FatTailsR/R/m_laplaceroll.R | 2 FatTailsR-1.7-0/FatTailsR/R/n_estimation.R |only FatTailsR-1.7-0/FatTailsR/R/o_estimation2.R |only FatTailsR-1.7-0/FatTailsR/R/p_regression.R |only FatTailsR-1.7-0/FatTailsR/man/FatTailsR.Rd | 43 FatTailsR-1.7-0/FatTailsR/man/checkcoefk.Rd |only FatTailsR-1.7-0/FatTailsR/man/checkquantiles.Rd | 24 FatTailsR-1.7-0/FatTailsR/man/ckiener1234.Rd | 23 FatTailsR-1.7-0/FatTailsR/man/dimdim.Rd | 22 FatTailsR-1.7-0/FatTailsR/man/elevate.Rd |only FatTailsR-1.7-0/FatTailsR/man/elevenprobs.Rd | 2 FatTailsR-1.7-0/FatTailsR/man/estimkiener11.Rd | 2 FatTailsR-1.7-0/FatTailsR/man/extractData.Rd | 16 FatTailsR-1.7-0/FatTailsR/man/fatreturns.Rd |only FatTailsR-1.7-0/FatTailsR/man/fitkienerX.Rd | 4 FatTailsR-1.7-0/FatTailsR/man/getnamesk.Rd | 7 FatTailsR-1.7-0/FatTailsR/man/kiener1.Rd | 14 FatTailsR-1.7-0/FatTailsR/man/kiener2.Rd | 14 FatTailsR-1.7-0/FatTailsR/man/kiener3.Rd | 14 FatTailsR-1.7-0/FatTailsR/man/kiener4.Rd | 14 FatTailsR-1.7-0/FatTailsR/man/kiener7.Rd |only FatTailsR-1.7-0/FatTailsR/man/kmoments.Rd | 2 FatTailsR-1.7-0/FatTailsR/man/regkienerLX.Rd | 2 42 files changed, 1186 insertions(+), 692 deletions(-)
Title: Methods for the Indirect Estimation of Bilateral Migration
Description: Indirect methods for estimating bilateral migration flows in the presence of partial or missing data. Methods might be relevant to other categorical data situations on non-migration data, where for example, marginal totals are known and only auxiliary bilateral data is available.
Author: Guy J. Abel
Maintainer: Guy J. Abel <g.j.abel@gmail.com>
Diff between migest versions 1.7.1 dated 2015-10-06 and 1.7.2 dated 2016-05-15
DESCRIPTION | 6 +++--- MD5 | 11 +++++++---- R/fn_migest.R | 2 ++ demo/00Index | 5 +++-- demo/cfplot_nat.R | 5 +++-- demo/cfplot_reg2.R |only inst/vidwp |only 7 files changed, 18 insertions(+), 11 deletions(-)
Title: Calls Copy Number Variants from Targeted Sequence Data
Description: Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.
Author: Vincent Plagnol
Maintainer: Vincent Plagnol <v.plagnol@ucl.ac.uk>
Diff between ExomeDepth versions 1.1.8 dated 2016-01-05 and 1.1.10 dated 2016-05-15
DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- NAMESPACE | 2 +- R/class_definition.R | 5 ++++- R/countBamInGranges.R | 8 ++++---- build/vignette.rds |binary data/Conrad.hg19.RData |binary data/ExomeCount.RData |binary data/exons.hg19.RData |binary data/exons.hg19.X.RData |binary data/genes.hg19.RData |binary inst/doc/ExomeDepth-vignette.Rnw | 4 ++++ inst/doc/ExomeDepth-vignette.pdf |binary vignettes/ExomeDepth-vignette.Rnw | 4 ++++ 14 files changed, 36 insertions(+), 25 deletions(-)
Title: Augments the Use of 'Asreml' in Fitting Mixed Models
Description: Assists in automating the testing of terms in mixed models when 'asreml' is used
to fit the models. The content falls into the following natural groupings: (i) Data, (ii) Object
manipulation functions, (iii) Model modification functions, (iv) Model testing functions,
(v) Model diagnostics functions, (vi) Prediction production and presentation functions,
(vii) Response transformation functions, and (viii) Miscellaneous functions. A history of the
fitting of a sequence of models is kept in a data frame. Procedures are available for choosing
models that conform to the hierarchy or marginality principle and for displaying predictions
for significant terms in tables and graphs. The package 'asreml' provides a computationally
efficient algorithm for fitting mixed models using Residual Maximum Likelihood. It can be
purchased from 'VSNi' <http://www.vsni.co.uk/> as 'asreml-R', who will supply a zip file for
local installation/updating.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>
Diff between asremlPlus versions 2.0-3 dated 2015-11-11 and 2.0-9 dated 2016-05-15
DESCRIPTION | 11 - MD5 | 40 +++-- R/reml.v20.r | 68 ++++----- R/variogram.faces.v2.r | 20 +- build/partial.rdb |binary data/WaterRunoff.dat.rda |only inst/NEWS.Rd | 33 ++++ inst/doc/asremlPlus-manual.pdf |binary man/WaterRunoff.dat.Rd |only man/Wheat.dat.Rd | 2 man/asremlPlus-deprecated.Rd | 2 man/asremlPlus-package.Rd | 250 +++++++++++++++++++---------------- man/choose.model.asrtests.Rd | 22 +-- man/pred.present.asreml.Rd | 32 +++- man/predictionplot.asreml.Rd | 37 ++--- man/predictparallel.asreml.Rd | 276 +++++++++++++++++++++------------------ man/recalc.wald.tab.asrtests.Rd | 6 man/sig.devn.reparam.asrtests.Rd | 69 +++++++++ man/simulate.asreml.Rd | 7 man/variofaces.Rd | 7 tests |only 21 files changed, 537 insertions(+), 345 deletions(-)