Sun, 15 May 2016

Package R.rsp updated to version 0.30.0 with previous version 0.21.0 dated 2015-12-19

Title: Dynamic Generation of Scientific Reports
Description: The RSP markup language makes any text-based document come alive. RSP provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. 'Today's date is <%=Sys.Date()%>'. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. Functions rstring() and rcat() make it easy to process RSP strings, rsource() sources an RSP file as it was an R script, while rfile() compiles it (even online) into its final output format, e.g. rfile('report.tex.rsp') generates 'report.pdf' and rfile('report.md.rsp') generates 'report.html'. RSP is ideal for self-contained scientific reports and R package vignettes. It's easy to use - if you know how to write an R script, you'll be up and running within minutes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between R.rsp versions 0.21.0 dated 2015-12-19 and 0.30.0 dated 2016-05-15

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More information about R.rsp at CRAN
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New package rmsfact with initial version 0.0.1
Package: rmsfact
Type: Package
Title: Amazing Random Facts About the World's Greatest Hacker
Version: 0.0.1
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Description: Display a randomly selected quote about Richard M. Stallman based on the collection in the 'GNU Octave' function 'fact()' which was aggregated by Jordi Gutiérrez Hermoso based on the (now defunct) site <http://www.stallmanfacts.com>.
License: GPL-3
LazyData: TRUE
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-15 14:56:34.749015 UTC; edd
Repository: CRAN
Date/Publication: 2016-05-15 21:46:35

More information about rmsfact at CRAN
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New package LEAP with initial version 0.1
Package: LEAP
Type: Package
Title: Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
Version: 0.1
Date: 2016-05-12
Author: Alicia T. Specht and Jun Li
Maintainer: Alicia T. Specht <aspecht2@nd.edu>
Suggests: ggplot2
Description: Advances in sequencing technology now allow researchers to capture the expression profiles of individual cells. Several algorithms have been developed to attempt to account for these effects by determining a cell's so-called `pseudotime', or relative biological state of transition. By applying these algorithms to single-cell sequencing data, we can sort cells into their pseudotemporal ordering based on gene expression. LEAP (Lag-based Expression Association for Pseudotime-series) then applies a time-series inspired lag-based correlation analysis to reveal linearly dependent genetic associations.
License: GPL-2
LazyData: yes
NeedsCompilation: no
Packaged: 2016-05-15 13:08:46 UTC; aspecht2
Repository: CRAN
Date/Publication: 2016-05-15 22:01:52

More information about LEAP at CRAN
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New package cystiSim with initial version 0.1.0
Package: cystiSim
Title: Agent-Based Model for Taenia_solium Transmission and Control
Version: 0.1.0
Date: 2016-05-15
Authors@R: c(person("Brecht", "Devleesschauwer", role = c("aut", "cre"), email = "brechtdv@gmail.com"), person("Uffe Christian", "Braae", role = "aut"))
Author: Brecht Devleesschauwer [aut, cre], Uffe Christian Braae [aut]
Maintainer: Brecht Devleesschauwer <brechtdv@gmail.com>
Description: The cystiSim package provides an agent-based model for Taenia solium transmission and control. cystiSim was developed within the framework of CYSTINET, the European Network on taeniosis/cysticercosis, COST ACTION TD1302.
URL: https://github.com/brechtdv/cystiSim
BugReports: https://github.com/brechtdv/cystiSim/issues
Depends: R (>= 3.3.0), ggplot2
Imports: magrittr, knitr, graphics, grDevices, stats, utils
License: GPL (>= 2)
LazyData: true
NeedsCompilation: no
Packaged: 2016-05-15 13:00:04 UTC; UGent
Repository: CRAN
Date/Publication: 2016-05-15 21:46:33

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Package circlize updated to version 0.3.7 with previous version 0.3.6 dated 2016-04-23

Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge amounts of information. Here the circlize package provides an implementation of circular layout generation in R as well as an enhancement of available software. The flexibility of this package is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily implemented by users for specific purposes. Together with the seamless connection between the powerful computational and visual environment in R, circlize gives users more convenience and freedom to design figures for better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>

Diff between circlize versions 0.3.6 dated 2016-04-23 and 0.3.7 dated 2016-05-15

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New package colorSpec with initial version 0.5-2
Package: colorSpec
Type: Package
Title: Color Calculations with Emphasis on Spectral Data
Version: 0.5-2
Encoding: UTF-8
Date: 2016-05-15
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Description: Calculate with spectral properties of light sources, materials, cameras, eyes, and scanners. Build complex systems from simpler parts using a spectral product algebra. For light sources, compute CCT and CRI. For object colors, compute optimal colors and Logvinenko coordinates. Work with the standard CIE illuminants and color matching functions, and read spectra from text files, including CGATS files. Sample text files, and 4 vignettes are included.
License: GPL (>= 3)
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.15)
Imports: MASS
Suggests: rgl, knitr
NeedsCompilation: no
Repository: CRAN
VignetteBuilder: knitr
BuildVignettes: yes
Packaged: 2016-05-15 14:18:36 UTC; Glenn
Date/Publication: 2016-05-15 21:50:29

More information about colorSpec at CRAN
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Package artfima updated to version 1.3 with previous version 1.2 dated 2016-01-22

Title: ARTFIMA Model Estimation
Description: Fit and simulate ARTFIMA. Theoretical autocovariance function and spectral density function for stationary ARTFIMA.
Author: A. I. McLeod, Mark M. Meerschaert, Farzad Sabzikar
Maintainer: A.I. McLeod <aimcleod@uwo.ca>

Diff between artfima versions 1.2 dated 2016-01-22 and 1.3 dated 2016-05-15

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Package Ryacas updated to version 0.3-1 with previous version 0.2-12.1 dated 2014-09-14

Title: R Interface to the Yacas Computer Algebra System
Description: An interface to the yacas computer algebra system.
Author: Rob Goedman <goedman@mac.com>, Gabor Grothendieck <ggrothendieck@gmail.com>, Søren Højsgaard <sorenh@math.aau.dk>, Ayal Pinkus <apinkus@xs4all.nl>, Grzegorz Mazur <teoretyk@gmail.com>
Maintainer: G. Grothendieck <ggrothendieck@gmail.com>

Diff between Ryacas versions 0.2-12.1 dated 2014-09-14 and 0.3-1 dated 2016-05-15

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Package FatTailsR updated to version 1.7-0 with previous version 1.6-0 dated 2016-02-20

Title: Kiener Distributions and Fat Tails in Finance
Description: Kiener distributions K1, K2, K3, K4 and K7 to characterize distributions with left and right, symmetric or asymmetric fat tails in market finance, neuroscience and other disciplines. Two algorithms to estimate with a high accuracy distribution parameters, quantiles, value-at-risk and expected shortfall. Include power hyperbolas and power hyperbolic functions.
Author: Patrice Kiener
Maintainer: Patrice Kiener <fattailsr@inmodelia.com>

Diff between FatTailsR versions 1.6-0 dated 2016-02-20 and 1.7-0 dated 2016-05-15

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Package migest updated to version 1.7.2 with previous version 1.7.1 dated 2015-10-06

Title: Methods for the Indirect Estimation of Bilateral Migration
Description: Indirect methods for estimating bilateral migration flows in the presence of partial or missing data. Methods might be relevant to other categorical data situations on non-migration data, where for example, marginal totals are known and only auxiliary bilateral data is available.
Author: Guy J. Abel
Maintainer: Guy J. Abel <g.j.abel@gmail.com>

Diff between migest versions 1.7.1 dated 2015-10-06 and 1.7.2 dated 2016-05-15

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More information about migest at CRAN
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Package ExomeDepth updated to version 1.1.10 with previous version 1.1.8 dated 2016-01-05

Title: Calls Copy Number Variants from Targeted Sequence Data
Description: Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.
Author: Vincent Plagnol
Maintainer: Vincent Plagnol <v.plagnol@ucl.ac.uk>

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Package asremlPlus updated to version 2.0-9 with previous version 2.0-3 dated 2015-11-11

Title: Augments the Use of 'Asreml' in Fitting Mixed Models
Description: Assists in automating the testing of terms in mixed models when 'asreml' is used to fit the models. The content falls into the following natural groupings: (i) Data, (ii) Object manipulation functions, (iii) Model modification functions, (iv) Model testing functions, (v) Model diagnostics functions, (vi) Prediction production and presentation functions, (vii) Response transformation functions, and (viii) Miscellaneous functions. A history of the fitting of a sequence of models is kept in a data frame. Procedures are available for choosing models that conform to the hierarchy or marginality principle and for displaying predictions for significant terms in tables and graphs. The package 'asreml' provides a computationally efficient algorithm for fitting mixed models using Residual Maximum Likelihood. It can be purchased from 'VSNi' <http://www.vsni.co.uk/> as 'asreml-R', who will supply a zip file for local installation/updating.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>

Diff between asremlPlus versions 2.0-3 dated 2015-11-11 and 2.0-9 dated 2016-05-15

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Permanent link


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