Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more. This package supports labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 1.9.4 dated 2016-03-29 and 2.0.0 dated 2016-05-18
sjPlot-1.9.4/sjPlot/tests |only sjPlot-2.0.0/sjPlot/DESCRIPTION | 16 sjPlot-2.0.0/sjPlot/MD5 | 183 - sjPlot-2.0.0/sjPlot/NAMESPACE | 5 sjPlot-2.0.0/sjPlot/NEWS | 23 sjPlot-2.0.0/sjPlot/NEWS.md | 27 sjPlot-2.0.0/sjPlot/R/helpfunctions.R | 1639 +++++++------- sjPlot-2.0.0/sjPlot/R/sjPlotAncovaLSMeans.R | 990 +++----- sjPlot-2.0.0/sjPlot/R/sjPlotAnova.R | 163 - sjPlot-2.0.0/sjPlot/R/sjPlotClusterAnalysis.R | 240 -- sjPlot-2.0.0/sjPlot/R/sjPlotCorr.R | 185 - sjPlot-2.0.0/sjPlot/R/sjPlotDist.R | 1042 ++++----- sjPlot-2.0.0/sjPlot/R/sjPlotFrequencies.R | 581 +---- sjPlot-2.0.0/sjPlot/R/sjPlotGLME.R | 1639 +++++--------- sjPlot-2.0.0/sjPlot/R/sjPlotGroupFrequencies.R | 732 ++---- sjPlot-2.0.0/sjPlot/R/sjPlotGroupPropTable.R | 522 ++-- sjPlot-2.0.0/sjPlot/R/sjPlotInteractions.R | 671 ++--- sjPlot-2.0.0/sjPlot/R/sjPlotLikert.R | 244 -- sjPlot-2.0.0/sjPlot/R/sjPlotLinreg.R | 2825 +++++++++++-------------- sjPlot-2.0.0/sjPlot/R/sjPlotLinregMultiple.R | 167 - sjPlot-2.0.0/sjPlot/R/sjPlotOdds.R | 2165 +++++++++---------- sjPlot-2.0.0/sjPlot/R/sjPlotOddsMultiple.R | 151 - sjPlot-2.0.0/sjPlot/R/sjPlotPCA.R | 209 - sjPlot-2.0.0/sjPlot/R/sjPlotPearsonsChi2Test.R | 60 sjPlot-2.0.0/sjPlot/R/sjPlotPolynomials.R | 101 sjPlot-2.0.0/sjPlot/R/sjPlotPropTable.R | 998 ++++---- sjPlot-2.0.0/sjPlot/R/sjPlotScatter.R | 238 +- sjPlot-2.0.0/sjPlot/R/sjPlotSetTheme.R | 176 - sjPlot-2.0.0/sjPlot/R/sjPlotStackFrequencies.R | 255 -- sjPlot-2.0.0/sjPlot/R/sjTabCorr.R | 989 ++++---- sjPlot-2.0.0/sjPlot/R/sjTabDataFrame.R | 805 +++---- sjPlot-2.0.0/sjPlot/R/sjTabFrequencies.R | 1427 +++++------- sjPlot-2.0.0/sjPlot/R/sjTabGrpmean.R | 115 - sjPlot-2.0.0/sjPlot/R/sjTabItemAnalysis.R | 800 +++---- sjPlot-2.0.0/sjPlot/R/sjTabLinReg.R | 854 ++----- sjPlot-2.0.0/sjPlot/R/sjTabMannWhitney.R | 20 sjPlot-2.0.0/sjPlot/R/sjTabOdds.R | 644 +---- sjPlot-2.0.0/sjPlot/R/sjTabPCA.R | 1130 ++++------ sjPlot-2.0.0/sjPlot/R/sjTabPropTable.R | 1129 ++++----- sjPlot-2.0.0/sjPlot/R/sjTabSPSS.R | 823 +++---- sjPlot-2.0.0/sjPlot/R/sjTabStackFrq.R | 202 - sjPlot-2.0.0/sjPlot/R/table_functions.R |only sjPlot-2.0.0/sjPlot/build/partial.rdb |binary sjPlot-2.0.0/sjPlot/man/adjust_plot_range.Rd | 2 sjPlot-2.0.0/sjPlot/man/dist_chisq.Rd | 8 sjPlot-2.0.0/sjPlot/man/dist_f.Rd | 8 sjPlot-2.0.0/sjPlot/man/dist_norm.Rd | 8 sjPlot-2.0.0/sjPlot/man/dist_t.Rd | 8 sjPlot-2.0.0/sjPlot/man/save_plot.Rd | 3 sjPlot-2.0.0/sjPlot/man/sjPlot-package.Rd | 8 sjPlot-2.0.0/sjPlot/man/sjc.cluster.Rd | 30 sjPlot-2.0.0/sjPlot/man/sjc.dend.Rd | 2 sjPlot-2.0.0/sjPlot/man/sjc.elbow.Rd | 4 sjPlot-2.0.0/sjPlot/man/sjc.grpdisc.Rd | 11 sjPlot-2.0.0/sjPlot/man/sjc.qclus.Rd | 127 - sjPlot-2.0.0/sjPlot/man/sjp.aov1.Rd | 95 sjPlot-2.0.0/sjPlot/man/sjp.chi2.Rd | 33 sjPlot-2.0.0/sjPlot/man/sjp.corr.Rd | 106 sjPlot-2.0.0/sjPlot/man/sjp.frq.Rd | 534 ++-- sjPlot-2.0.0/sjPlot/man/sjp.glm.Rd | 299 +- sjPlot-2.0.0/sjPlot/man/sjp.glmer.Rd | 287 +- sjPlot-2.0.0/sjPlot/man/sjp.glmm.Rd | 161 - sjPlot-2.0.0/sjPlot/man/sjp.gpt.Rd | 90 sjPlot-2.0.0/sjPlot/man/sjp.grpfrq.Rd | 292 +- sjPlot-2.0.0/sjPlot/man/sjp.int.Rd | 201 - sjPlot-2.0.0/sjPlot/man/sjp.likert.Rd | 167 - sjPlot-2.0.0/sjPlot/man/sjp.lm.Rd | 289 +- sjPlot-2.0.0/sjPlot/man/sjp.lmer.Rd | 307 +- sjPlot-2.0.0/sjPlot/man/sjp.lmm.Rd | 144 - sjPlot-2.0.0/sjPlot/man/sjp.pca.Rd | 105 sjPlot-2.0.0/sjPlot/man/sjp.poly.Rd | 57 sjPlot-2.0.0/sjPlot/man/sjp.scatter.Rd | 126 - sjPlot-2.0.0/sjPlot/man/sjp.setTheme.Rd | 78 sjPlot-2.0.0/sjPlot/man/sjp.stackfrq.Rd | 142 - sjPlot-2.0.0/sjPlot/man/sjp.xtab.Rd | 236 -- sjPlot-2.0.0/sjPlot/man/sjt.corr.Rd | 120 - sjPlot-2.0.0/sjPlot/man/sjt.df.Rd | 89 sjPlot-2.0.0/sjPlot/man/sjt.frq.Rd | 201 - sjPlot-2.0.0/sjPlot/man/sjt.glm.Rd | 301 +- sjPlot-2.0.0/sjPlot/man/sjt.glmer.Rd | 249 +- sjPlot-2.0.0/sjPlot/man/sjt.grpmean.Rd | 57 sjPlot-2.0.0/sjPlot/man/sjt.itemanalysis.Rd | 46 sjPlot-2.0.0/sjPlot/man/sjt.lm.Rd | 343 +-- sjPlot-2.0.0/sjPlot/man/sjt.lmer.Rd | 273 +- sjPlot-2.0.0/sjPlot/man/sjt.mwu.Rd | 20 sjPlot-2.0.0/sjPlot/man/sjt.pca.Rd | 107 sjPlot-2.0.0/sjPlot/man/sjt.stackfrq.Rd | 123 - sjPlot-2.0.0/sjPlot/man/sjt.xtab.Rd | 120 - sjPlot-2.0.0/sjPlot/man/view_df.Rd | 78 89 files changed, 14263 insertions(+), 17017 deletions(-)
Title: Demographic Modelling Using Projection Matrices
Description: Tools for modelling populations and demography using matrix projection
models (MPMs). Designed to build on similar tools already available in 'popbio'.
Specific foci are on indices of transient dynamics and use of control theory
approaches, but 'popdemo' may also be useful for other implementations of MPMs,
or matrix models in a more general sense.
Author: Iain Stott <iainmstott@gmail.com>, Dave Hodgson
<D.J.Hodgson@exeter.ac.uk>, Stuart Townley <S.B.Townley@exeter.ac.uk>
Maintainer: Iain Stott <iainmstott@gmail.com>
Diff between popdemo versions 0.1-4 dated 2014-06-10 and 0.2-3 dated 2016-05-18
ChangeLog | 18 +++++++++++++++++- DESCRIPTION | 29 +++++++++++++---------------- MD5 | 16 ++++++++-------- NAMESPACE | 3 +++ R/elas.R | 2 +- R/sens.R | 2 +- man/elas.Rd | 3 ++- man/popdemo-package.Rd | 8 ++++---- man/sens.Rd | 3 ++- 9 files changed, 51 insertions(+), 33 deletions(-)
Title: Piecewise Structural Equation Modeling
Description: Implements piecewise structural equation models.
Author: Jon Lefcheck
Maintainer: Jon Lefcheck <jslefche@vims.edu>
Diff between piecewiseSEM versions 1.1 dated 2016-03-14 and 1.1.1 dated 2016-05-18
DESCRIPTION | 8 - MD5 | 44 ++++--- NEWS.md | 7 + R/filter.exogenous.R | 7 + R/get.dag.R | 39 ------ R/get.formula.list.R |only R/get.sort.dag.R | 5 R/sem.basis.set.R | 37 +----- R/sem.missing.paths.R | 130 ++++++++++++++++------ R/sem.model.fits.R | 48 +++++++- README.md | 8 + build/vignette.rds |binary inst/CITATION | 10 - inst/doc/piecewiseSEM.Rmd | 4 inst/doc/piecewiseSEM.html | 43 +++---- man/get.formula.list.Rd |only man/get.sort.dag.Rd | 6 - man/piecewiseSEM-package.Rd | 71 +++++++++--- man/sem.aic.Rd | 63 +++++++---- man/sem.coefs.Rd | 2 man/sem.fisher.c.Rd | 59 +++++++--- man/sem.fit.Rd | 249 ++++++++++++++++++++++++-------------------- man/sem.missing.paths.Rd | 61 +++++++--- vignettes/piecewiseSEM.Rmd | 4 24 files changed, 554 insertions(+), 351 deletions(-)
Title: Embedded Scientific Computing and Reproducible Research with R
Description: The OpenCPU system exposes an http API for embedded scientific
computing with R. The server can run either as a single-user development
server within the interactive R session, or as a multi-user linux stack
based on rApache and NGINX. The current R package implements the core of
the system. When loaded in R, it automatically initiates the single-user
server and displays the web address in the console. The OpenCPU website
has more detailed API documentation.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between opencpu versions 1.6.0 dated 2016-05-10 and 1.6.1 dated 2016-05-18
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 4 ++++ R/extract.R | 12 ++++++------ inst/doc/opencpu-paper.pdf |binary inst/doc/opencpu-server.pdf |binary 6 files changed, 19 insertions(+), 15 deletions(-)
Title: Necessary Condition Analysis
Description: Performs a Necessary Condition Analysis (NCA). (Dul, J. 2016. Necessary Condition Analysis (NCA). ''Logic and Methodology of 'Necessary but not Sufficient' causality." Organizational Research Methods 19(1), 10-52)
NCA identifies necessary (but not sufficient) conditions in datasets. Instead of drawing a regression line ''through the middle of the data'' in an xy-plot, NCA draws the ceiling line. The ceiling line y = f(x) separates the area with observations from the area without observations.
(Nearly) all observations are below the ceiling line: y <= f(x). The empty zone is in the upper left hand corner of the xy-plot (with the convention that the x-axis is ''horizontal'' and the y-axis is ''vertical'' and that values increase ''upwards'' and ''to the right''). The ceiling line is a (piecewise) linear non-decreasing line: a linear step function or a straight line. It indicates which level of x (e.g. an effort or input) is necessary but not sufficient for a (desired) level of y (e.g. good performance or output).
Author: Jan Dul <jdul@rsm.nl>
Maintainer: Govert Buijs <buijs@rsm.nl>
Diff between NCA versions 1.1 dated 2015-10-10 and 2.0 dated 2016-05-18
NCA-1.1/NCA/R/loop_data.R |only NCA-1.1/NCA/R/nca_ce_fdh.R |only NCA-1.1/NCA/R/nca_ce_vrs.R |only NCA-1.1/NCA/R/nca_cols.R |only NCA-1.1/NCA/R/nca_cr_fdh.R |only NCA-1.1/NCA/R/nca_cr_vrs.R |only NCA-1.1/NCA/R/nca_lh.R |only NCA-1.1/NCA/R/nca_ols.R |only NCA-1.1/NCA/R/nca_qr.R |only NCA-1.1/NCA/R/nca_sfa.R |only NCA-1.1/NCA/R/p_bottleneck_ce.R |only NCA-1.1/NCA/R/p_display_bottleneck.R |only NCA-1.1/NCA/R/p_display_graphs.R |only NCA-1.1/NCA/R/p_display_results.R |only NCA-1.1/NCA/R/p_display_tables.R |only NCA-1.1/NCA/R/p_fast_peers.R |only NCA-1.1/NCA/R/p_new_graphics.R |only NCA-1.1/NCA/R/p_optimal_peers.R |only NCA-1.1/NCA/man/loop_data.Rd |only NCA-1.1/NCA/man/nca_ce_fdh.Rd |only NCA-1.1/NCA/man/nca_ce_vrs.Rd |only NCA-1.1/NCA/man/nca_cols.Rd |only NCA-1.1/NCA/man/nca_cr_fdh.Rd |only NCA-1.1/NCA/man/nca_cr_vrs.Rd |only NCA-1.1/NCA/man/nca_lh.Rd |only NCA-1.1/NCA/man/nca_ols.Rd |only NCA-1.1/NCA/man/nca_qr.Rd |only NCA-1.1/NCA/man/nca_sfa.Rd |only NCA-2.0/NCA/DESCRIPTION | 14 - NCA-2.0/NCA/MD5 | 85 +++++----- NCA-2.0/NCA/NAMESPACE | 12 - NCA-2.0/NCA/R/nca.R | 219 +++++++++++++-------------- NCA-2.0/NCA/R/nca_bottleneck.R |only NCA-2.0/NCA/R/nca_output.R |only NCA-2.0/NCA/R/nca_plots.R |only NCA-2.0/NCA/R/nca_summary.R |only NCA-2.0/NCA/R/onAttach.R | 29 ++- NCA-2.0/NCA/R/p_above.R | 31 ++- NCA-2.0/NCA/R/p_bottleneck.R | 225 +++++++++++++++++++++++++--- NCA-2.0/NCA/R/p_bottleneck_table.R | 2 NCA-2.0/NCA/R/p_ceiling.R | 168 +++++++++++++++----- NCA-2.0/NCA/R/p_constants.R | 32 ++- NCA-2.0/NCA/R/p_graphics.R |only NCA-2.0/NCA/R/p_ineffs.R | 67 ++++++-- NCA-2.0/NCA/R/p_loop_data.R |only NCA-2.0/NCA/R/p_nca_ce_fdh.R |only NCA-2.0/NCA/R/p_nca_ce_vrs.R |only NCA-2.0/NCA/R/p_nca_cols.R |only NCA-2.0/NCA/R/p_nca_cr_fdh.R |only NCA-2.0/NCA/R/p_nca_cr_vrs.R |only NCA-2.0/NCA/R/p_nca_lh.R |only NCA-2.0/NCA/R/p_nca_ols.R |only NCA-2.0/NCA/R/p_nca_qr.R |only NCA-2.0/NCA/R/p_nca_sfa.R |only NCA-2.0/NCA/R/p_peers.R |only NCA-2.0/NCA/R/p_scope.R |only NCA-2.0/NCA/R/p_utils.R | 94 ++++++++--- NCA-2.0/NCA/R/p_validate.R |only NCA-2.0/NCA/data/nca.example.RData |binary NCA-2.0/NCA/man/NCA-package.Rd | 2 NCA-2.0/NCA/man/ceilings.Rd |only NCA-2.0/NCA/man/line.colors.Rd |only NCA-2.0/NCA/man/line.types.Rd |only NCA-2.0/NCA/man/line.width.Rd |only NCA-2.0/NCA/man/nca.Rd | 73 +++------ NCA-2.0/NCA/man/nca.example.Rd | 20 +- NCA-2.0/NCA/man/nca_analysis.Rd |only NCA-2.0/NCA/man/nca_output.Rd |only NCA-2.0/NCA/man/point.type.Rd |only NCA-2.0/NCA/tests/testthat/test.p_ceiling.R | 101 +++++++++++- 70 files changed, 799 insertions(+), 375 deletions(-)
Title: Dynamic Modeling and Parameter Estimation in ODE Models
Description: The framework provides functions to generate ODEs of reaction
networks, parameter transformations, observation functions, residual functions,
etc. The framework follows the paradigm that derivative information should be
used for optimization whenever possible. Therefore, all major functions produce
and can handle expressions for symbolic derivatives.
Author: Daniel Kaschek
Maintainer: Daniel Kaschek <daniel.kaschek@physik.uni-freiburg.de>
Diff between dMod versions 0.1 dated 2015-06-11 and 0.3.1 dated 2016-05-18
dMod-0.1/dMod/R/generateEquations.R |only dMod-0.1/dMod/inst/testing |only dMod-0.1/dMod/man/Pi.Rd |only dMod-0.1/dMod/man/addObservable.Rd |only dMod-0.1/dMod/man/as.obj.Rd |only dMod-0.1/dMod/man/constraintExp2.Rd |only dMod-0.1/dMod/man/generateEquations.Rd |only dMod-0.1/dMod/man/generateModel.Rd |only dMod-0.1/dMod/man/grapes-o-grapes.Rd |only dMod-0.1/dMod/man/plus-.obj.Rd |only dMod-0.1/dMod/man/print.eqnList.Rd |only dMod-0.1/dMod/man/subset.eqnList.Rd |only dMod-0.1/dMod/man/variableTransformation.Rd |only dMod-0.3.1/dMod/DESCRIPTION | 20 dMod-0.3.1/dMod/MD5 | 245 ++++++-- dMod-0.3.1/dMod/NAMESPACE | 174 +++++- dMod-0.3.1/dMod/R/classes.R |only dMod-0.3.1/dMod/R/dMod.R | 5 dMod-0.3.1/dMod/R/data.R | 118 ++-- dMod-0.3.1/dMod/R/dataClass.R |only dMod-0.3.1/dMod/R/eqnClass.R |only dMod-0.3.1/dMod/R/objClass.R |only dMod-0.3.1/dMod/R/odeClass.R |only dMod-0.3.1/dMod/R/parClass.R |only dMod-0.3.1/dMod/R/parameters.R | 249 +++++--- dMod-0.3.1/dMod/R/plots.R | 576 ++++++++++++++++++-- dMod-0.3.1/dMod/R/prdClass.R |only dMod-0.3.1/dMod/R/prediction.R | 589 +++++++++++++++----- dMod-0.3.1/dMod/R/remoteComputing.R |only dMod-0.3.1/dMod/R/statistics.R | 281 +++++---- dMod-0.3.1/dMod/R/symbolics.R | 31 - dMod-0.3.1/dMod/R/testing.R |only dMod-0.3.1/dMod/R/tools.R | 389 +++++++++---- dMod-0.3.1/dMod/R/toolsBeni.R | 92 +-- dMod-0.3.1/dMod/R/toolsDaniel.R | 305 ---------- dMod-0.3.1/dMod/R/toolsMalenka.R |only dMod-0.3.1/dMod/R/toolsMarcus.R | 107 +-- dMod-0.3.1/dMod/R/toolsMirjam.R | 43 + dMod-0.3.1/dMod/R/toolsWolfgang.R |only dMod-0.3.1/dMod/build |only dMod-0.3.1/dMod/inst/code/buildSystem.py | 262 +++------ dMod-0.3.1/dMod/inst/code/checkPredictions.py |only dMod-0.3.1/dMod/inst/code/functions.py | 618 ++++++++++++--------- dMod-0.3.1/dMod/inst/code/polyClass.py |only dMod-0.3.1/dMod/inst/code/readData.py | 225 ++++++- dMod-0.3.1/dMod/inst/code/steadyStates.py |only dMod-0.3.1/dMod/inst/code/symmetryDetection.py | 630 ++++++++-------------- dMod-0.3.1/dMod/inst/doc |only dMod-0.3.1/dMod/inst/examples |only dMod-0.3.1/dMod/inst/templates/R2CTemplate.R | 176 +----- dMod-0.3.1/dMod/inst/templates/unitTestTemplate.R |only dMod-0.3.1/dMod/man/P.Rd | 55 - dMod-0.3.1/dMod/man/Pexpl.Rd |only dMod-0.3.1/dMod/man/Pimpl.Rd |only dMod-0.3.1/dMod/man/Xd.Rd |only dMod-0.3.1/dMod/man/Xf.Rd | 28 dMod-0.3.1/dMod/man/Xs.Rd | 217 ++++++- dMod-0.3.1/dMod/man/Xt.Rd |only dMod-0.3.1/dMod/man/Y.Rd | 81 ++ dMod-0.3.1/dMod/man/addReaction.Rd | 51 + dMod-0.3.1/dMod/man/as.data.frame.eqnlist.Rd |only dMod-0.3.1/dMod/man/as.eqnvec.Rd |only dMod-0.3.1/dMod/man/as.objlist.Rd |only dMod-0.3.1/dMod/man/as.parframe.Rd |only dMod-0.3.1/dMod/man/as.parvec.parframe.Rd |only dMod-0.3.1/dMod/man/attrs.Rd |only dMod-0.3.1/dMod/man/blockdiagSymb.Rd | 7 dMod-0.3.1/dMod/man/combine.Rd | 22 dMod-0.3.1/dMod/man/compare.Rd |only dMod-0.3.1/dMod/man/conservedQuantities.Rd |only dMod-0.3.1/dMod/man/constraintL2.Rd | 27 dMod-0.3.1/dMod/man/controls.Rd |only dMod-0.3.1/dMod/man/coordTransform.Rd |only dMod-0.3.1/dMod/man/createExample.Rd |only dMod-0.3.1/dMod/man/datalist.Rd |only dMod-0.3.1/dMod/man/datapointL2.Rd | 43 - dMod-0.3.1/dMod/man/detectFreeCores.Rd |only dMod-0.3.1/dMod/man/dot.Rd |only dMod-0.3.1/dMod/man/eqnlist.Rd |only dMod-0.3.1/dMod/man/eqnvec.Rd |only dMod-0.3.1/dMod/man/exmpextr.Rd |only dMod-0.3.1/dMod/man/expand.grid.alt.Rd | 2 dMod-0.3.1/dMod/man/extractExamples.Rd |only dMod-0.3.1/dMod/man/fitErrorModel.Rd |only dMod-0.3.1/dMod/man/forcingsSymb.Rd | 4 dMod-0.3.1/dMod/man/format.eqnvec.Rd |only dMod-0.3.1/dMod/man/funC0.Rd | 45 + dMod-0.3.1/dMod/man/getCoefficients.Rd | 5 dMod-0.3.1/dMod/man/getConditions.Rd |only dMod-0.3.1/dMod/man/getDerivs.Rd |only dMod-0.3.1/dMod/man/getFluxes.Rd |only dMod-0.3.1/dMod/man/getParameters.Rd |only dMod-0.3.1/dMod/man/getReactions.Rd |only dMod-0.3.1/dMod/man/ggopen.Rd |only dMod-0.3.1/dMod/man/lbind.Rd | 2 dMod-0.3.1/dMod/man/load.parlist.Rd |only dMod-0.3.1/dMod/man/loadTemplate.Rd | 2 dMod-0.3.1/dMod/man/long2wide.Rd | 2 dMod-0.3.1/dMod/man/lsdMod.Rd |only dMod-0.3.1/dMod/man/mssample.Rd |only dMod-0.3.1/dMod/man/mstrust.Rd |only dMod-0.3.1/dMod/man/nll.Rd |only dMod-0.3.1/dMod/man/normL2.Rd |only dMod-0.3.1/dMod/man/nullZ.Rd |only dMod-0.3.1/dMod/man/objframe.Rd |only dMod-0.3.1/dMod/man/objlist.Rd |only dMod-0.3.1/dMod/man/obsfn.Rd |only dMod-0.3.1/dMod/man/odemodel.Rd |only dMod-0.3.1/dMod/man/parfn.Rd |only dMod-0.3.1/dMod/man/parframe.Rd |only dMod-0.3.1/dMod/man/parlist.Rd |only dMod-0.3.1/dMod/man/parvec.Rd |only dMod-0.3.1/dMod/man/plot.datalist.Rd |only dMod-0.3.1/dMod/man/plot.parlist.Rd |only dMod-0.3.1/dMod/man/plotArray.Rd |only dMod-0.3.1/dMod/man/plotCombined.Rd | 78 ++ dMod-0.3.1/dMod/man/plotData.Rd | 65 ++ dMod-0.3.1/dMod/man/plotFluxes.Rd |only dMod-0.3.1/dMod/man/plotPars.Rd |only dMod-0.3.1/dMod/man/plotPaths.Rd | 18 dMod-0.3.1/dMod/man/plotPrediction.Rd | 64 ++ dMod-0.3.1/dMod/man/plotProfile.Rd | 14 dMod-0.3.1/dMod/man/plotValues.Rd |only dMod-0.3.1/dMod/man/plus-.datalist.Rd |only dMod-0.3.1/dMod/man/plus-.fn.Rd |only dMod-0.3.1/dMod/man/plus-.objfn.Rd |only dMod-0.3.1/dMod/man/plus-.objlist.Rd |only dMod-0.3.1/dMod/man/prdfn.Rd |only dMod-0.3.1/dMod/man/prdframe.Rd |only dMod-0.3.1/dMod/man/prdlist.Rd |only dMod-0.3.1/dMod/man/print.eqnlist.Rd |only dMod-0.3.1/dMod/man/print.eqnvec.Rd |only dMod-0.3.1/dMod/man/print.parfn.Rd |only dMod-0.3.1/dMod/man/print.parvec.Rd |only dMod-0.3.1/dMod/man/print0.Rd | 22 dMod-0.3.1/dMod/man/priorL2.Rd | 28 dMod-0.3.1/dMod/man/profile.Rd | 114 ++- dMod-0.3.1/dMod/man/progressBar.Rd | 2 dMod-0.3.1/dMod/man/python.version.request.Rd |only dMod-0.3.1/dMod/man/python.version.rpython.Rd |only dMod-0.3.1/dMod/man/python.version.sys.Rd |only dMod-0.3.1/dMod/man/reduceReplicates.Rd |only dMod-0.3.1/dMod/man/repWithNames.Rd |only dMod-0.3.1/dMod/man/res.Rd | 14 dMod-0.3.1/dMod/man/resolveRecurrence.Rd | 4 dMod-0.3.1/dMod/man/rref.Rd |only dMod-0.3.1/dMod/man/runbg.Rd |only dMod-0.3.1/dMod/man/scale_color_dMod.Rd |only dMod-0.3.1/dMod/man/scale_fill_dMod.Rd |only dMod-0.3.1/dMod/man/stat.parlist.Rd |only dMod-0.3.1/dMod/man/steadyStates.Rd |only dMod-0.3.1/dMod/man/strelide.Rd |only dMod-0.3.1/dMod/man/strpad.Rd |only dMod-0.3.1/dMod/man/submatrix.Rd |only dMod-0.3.1/dMod/man/subset.eqnlist.Rd |only dMod-0.3.1/dMod/man/summary.eqnvec.Rd |only dMod-0.3.1/dMod/man/symmetryDetection.Rd | 18 dMod-0.3.1/dMod/man/theme_dMod.Rd |only dMod-0.3.1/dMod/man/times-.fn.Rd |only dMod-0.3.1/dMod/man/wide2long.Rd | 6 dMod-0.3.1/dMod/man/wide2long.data.frame.Rd | 6 dMod-0.3.1/dMod/man/wide2long.list.Rd | 6 dMod-0.3.1/dMod/man/wide2long.matrix.Rd | 6 dMod-0.3.1/dMod/man/write.eqnlist.Rd |only dMod-0.3.1/dMod/man/wrss.Rd | 10 dMod-0.3.1/dMod/vignettes |only 166 files changed, 3896 insertions(+), 2307 deletions(-)
Title: Estimates Pseudotimes for Single Cell Expression Data
Description: Implements the DeLorean model to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.
Author: John Reid <john.reid@mrc-bsu.cam.ac.uk>
Maintainer: John Reid <john.reid@mrc-bsu.cam.ac.uk>
Diff between DeLorean versions 1.2.0 dated 2016-04-15 and 1.2.2 dated 2016-05-18
DeLorean-1.2.0/DeLorean/inst/Stan/simple-model.stan |only DeLorean-1.2.0/DeLorean/inst/Stan/simplest-model.stan |only DeLorean-1.2.0/DeLorean/man/estimate.capture.cell.sizes.Rd |only DeLorean-1.2.2/DeLorean/DESCRIPTION | 13 DeLorean-1.2.2/DeLorean/MD5 | 70 - DeLorean-1.2.2/DeLorean/NAMESPACE | 2 DeLorean-1.2.2/DeLorean/NEWS.md |only DeLorean-1.2.2/DeLorean/R/cell-size.r | 70 - DeLorean-1.2.2/DeLorean/R/model.r | 441 ++++------ DeLorean-1.2.2/DeLorean/R/package.r | 134 +-- DeLorean-1.2.2/DeLorean/R/plot.r | 55 - DeLorean-1.2.2/DeLorean/R/report.r | 6 DeLorean-1.2.2/DeLorean/README.md | 13 DeLorean-1.2.2/DeLorean/build/vignette.rds |binary DeLorean-1.2.2/DeLorean/inst/Rmd/cellsizes.Rmd |only DeLorean-1.2.2/DeLorean/inst/Rmd/data.Rmd | 9 DeLorean-1.2.2/DeLorean/inst/Rmd/hyper-parameters.Rmd | 30 DeLorean-1.2.2/DeLorean/inst/Rmd/posterior.Rmd | 11 DeLorean-1.2.2/DeLorean/inst/Stan/exact-sizes.stan |only DeLorean-1.2.2/DeLorean/inst/Stan/exact.stan |only DeLorean-1.2.2/DeLorean/inst/Stan/lowrank-sizes.stan |only DeLorean-1.2.2/DeLorean/inst/Stan/lowrank.stan | 2 DeLorean-1.2.2/DeLorean/inst/doc/DeLorean.R | 9 DeLorean-1.2.2/DeLorean/inst/doc/DeLorean.Rmd | 16 DeLorean-1.2.2/DeLorean/inst/doc/DeLorean.html | 96 +- DeLorean-1.2.2/DeLorean/inst/scripts/McDavid-DeLorean.Rmd | 171 +-- DeLorean-1.2.2/DeLorean/inst/scripts/McDavid-Oscope.Rmd |only DeLorean-1.2.2/DeLorean/inst/scripts/McDavid-fns.R |only DeLorean-1.2.2/DeLorean/inst/scripts/Shalek-DeLorean.Rmd | 213 ++-- DeLorean-1.2.2/DeLorean/inst/scripts/Windram-DeLorean.Rmd | 230 +++-- DeLorean-1.2.2/DeLorean/inst/scripts/Windram-Monocle-compare.eps | 6 DeLorean-1.2.2/DeLorean/inst/scripts/Windram-Monocle.Rmd | 38 DeLorean-1.2.2/DeLorean/inst/scripts/Windram-posterior-cor.eps |only DeLorean-1.2.2/DeLorean/inst/scripts/Windram-pseudotime-vs-obfuscated.eps |only DeLorean-1.2.2/DeLorean/inst/scripts/Windram-tau-posterior.eps |only DeLorean-1.2.2/DeLorean/inst/scripts/complexity.Rmd |only DeLorean-1.2.2/DeLorean/inst/scripts/config.R | 22 DeLorean-1.2.2/DeLorean/inst/scripts/shared.R | 2 DeLorean-1.2.2/DeLorean/man/adjust.by.cell.sizes.Rd | 4 DeLorean-1.2.2/DeLorean/man/estimate.cell.sizes.Rd |only DeLorean-1.2.2/DeLorean/man/estimate.hyper.Rd | 15 DeLorean-1.2.2/DeLorean/man/make.fit.valid.Rd |only DeLorean-1.2.2/DeLorean/man/profiles.plot.Rd | 5 DeLorean-1.2.2/DeLorean/vignettes/DeLorean.Rmd | 16 44 files changed, 868 insertions(+), 831 deletions(-)
Title: Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Description: Management of and data extraction from camera trap photographs in wildlife studies. The package provides a workflow for storing and sorting camera trap photographs, computes record databases and detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it provides simple mapping functions (number of species, number of independent species detections by station) and can visualise activity data.
Author: Juergen Niedballa [aut, cre],
Alexandre Courtiol [aut],
Rahel Sollmann [aut],
John Mathai [ctb],
Seth Timothy Wong [ctb],
An The Truong Nguyen [ctb],
Azlan bin Mohamed [ctb],
Andrew Tilker [ctb],
Andreas Wilting [ctb, ths]
Maintainer: Juergen Niedballa <niedballa@izw-berlin.de>
Diff between camtrapR versions 0.99.0 dated 2016-04-12 and 0.99.1 dated 2016-05-18
DESCRIPTION | 8 MD5 | 56 ++-- NEWS | 15 + R/activityDensity.R | 9 R/activityHistogram.R | 2 R/activityOverlap.R | 9 R/activityRadial.R | 6 R/checkSpeciesIdentification.R | 11 R/detectionHistory.R | 159 ++++------- R/imageRename.R | 2 R/spatialDetectionHistory.R | 112 ++------ R/surveyReport.R | 10 R/variousOtherHelperFunctions.R | 311 +++++++++++++--------- build/vignette.rds |binary inst/doc/DataExploration.Rmd | 2 inst/doc/DataExploration.html | 152 ++++++----- inst/doc/DataExtraction.Rmd | 2 inst/doc/DataExtraction.html | 352 +++++++++++++------------- inst/doc/ImageOrganisation.Rmd | 4 inst/doc/ImageOrganisation.html | 200 ++++++++------ inst/doc/SpeciesIndividualIdentification.Rmd | 2 inst/doc/SpeciesIndividualIdentification.html | 265 ++++++++++--------- man/activityRadial.Rd | 8 man/detectionHistory.Rd | 9 man/recordTable.Rd | 2 vignettes/DataExploration.Rmd | 2 vignettes/DataExtraction.Rmd | 2 vignettes/ImageOrganisation.Rmd | 4 vignettes/SpeciesIndividualIdentification.Rmd | 2 29 files changed, 887 insertions(+), 831 deletions(-)
Title: Functions and Datasets for Books by Jeff Gill
Description: Functions and datasets for Jeff Gill: "Bayesian Methods: A Social and Behavioral Sciences Approach". First, Second, and Third Edition. Published by Chapman and Hall/CRC (2002, 2007, 2014).
Author: Jonathan Homola <homola@wustl.edu>, Danielle Korman, Jacob Metz, Miguel Pereira <m.pereira@wustl.edu>, Mauricio Vela, and Jeff Gill <jgill@wustl.edu>
Maintainer: Jeff Gill <jgill@wustl.edu>
Diff between BaM versions 0.99 dated 2010-10-18 and 1.0.1 dated 2016-05-18
BaM-0.99/BaM/CONTENTS |only BaM-0.99/BaM/INDEX |only BaM-0.99/BaM/R/plot.walk.MH.R |only BaM-0.99/BaM/R/t.ci.table.R |only BaM-0.99/BaM/R/walk.G.R |only BaM-0.99/BaM/data/DA_cwp.tab |only BaM-0.99/BaM/data/military.rda |only BaM-0.99/BaM/inst |only BaM-0.99/BaM/man/biv.exp.Rd |only BaM-0.99/BaM/man/cabinet.durations.Rd |only BaM-0.99/BaM/man/cand.gen.Rd |only BaM-0.99/BaM/man/military.Rd |only BaM-0.99/BaM/man/nc.sub.Rd |only BaM-0.99/BaM/man/plot.walk.MH.Rd |only BaM-0.99/BaM/man/rmultnorm.Rd |only BaM-0.99/BaM/man/t.ci.table.Rd |only BaM-0.99/BaM/man/walk.G.Rd |only BaM-1.0.1/BaM/DESCRIPTION | 25 +- BaM-1.0.1/BaM/MD5 |only BaM-1.0.1/BaM/NAMESPACE |only BaM-1.0.1/BaM/R/Actuarial.R |only BaM-1.0.1/BaM/R/DA_cwp.R |only BaM-1.0.1/BaM/R/Recidivism-data.R |only BaM-1.0.1/BaM/R/adam.jags-data.R |only BaM-1.0.1/BaM/R/afghan.deaths.R |only BaM-1.0.1/BaM/R/africa.R |only BaM-1.0.1/BaM/R/asap.data.list-data.R |only BaM-1.0.1/BaM/R/baldus-data.R |only BaM-1.0.1/BaM/R/bcp.R | 56 +++-- BaM-1.0.1/BaM/R/biv.norm.post.R | 81 ++++--- BaM-1.0.1/BaM/R/cabinet.duration.R |only BaM-1.0.1/BaM/R/child.R |only BaM-1.0.1/BaM/R/china.wars.R | 124 +++++------ BaM-1.0.1/BaM/R/coal.mining.disasters.R |only BaM-1.0.1/BaM/R/contracep.R |only BaM-1.0.1/BaM/R/dmultinorm.R | 40 ++- BaM-1.0.1/BaM/R/dp.R |only BaM-1.0.1/BaM/R/durations.hpd.R | 73 +++--- BaM-1.0.1/BaM/R/elicspend.R |only BaM-1.0.1/BaM/R/ethnic.immigration.R |only BaM-1.0.1/BaM/R/executions-data.R |only BaM-1.0.1/BaM/R/experts-data.R |only BaM-1.0.1/BaM/R/expo.gibbs.R | 48 ++-- BaM-1.0.1/BaM/R/expo.metrop.R | 76 +++--- BaM-1.0.1/BaM/R/fdr-data.R |only BaM-1.0.1/BaM/R/hanjack-data.R |only BaM-1.0.1/BaM/R/hit.run.R | 73 ++++-- BaM-1.0.1/BaM/R/iq-data.R |only BaM-1.0.1/BaM/R/italy.parties-data.R |only BaM-1.0.1/BaM/R/lunatics-data.R |only BaM-1.0.1/BaM/R/marriage.rates-data.R |only BaM-1.0.1/BaM/R/metropolis.R | 44 ++- BaM-1.0.1/BaM/R/militarydf-data.R |only BaM-1.0.1/BaM/R/nc.sub.dat-data.R |only BaM-1.0.1/BaM/R/norm.known.var.R | 41 ++- BaM-1.0.1/BaM/R/normal.posterior.summary.R | 36 +-- BaM-1.0.1/BaM/R/norr-data.R |only BaM-1.0.1/BaM/R/opic-data.R |only BaM-1.0.1/BaM/R/pbc.vote-data.R |only BaM-1.0.1/BaM/R/plot_walk_G.R |only BaM-1.0.1/BaM/R/plot_walk_MH.R |only BaM-1.0.1/BaM/R/retail.sales-data.R |only BaM-1.0.1/BaM/R/rmultinorm.R | 45 ++-- BaM-1.0.1/BaM/R/romney.R | 72 +++--- BaM-1.0.1/BaM/R/sir.R | 287 ++++++++++++++++++++------ BaM-1.0.1/BaM/R/socatt-data.R |only BaM-1.0.1/BaM/R/strikes-data.R |only BaM-1.0.1/BaM/R/t_ci_table.R |only BaM-1.0.1/BaM/R/terrorism-data.R |only BaM-1.0.1/BaM/R/texas-data.R |only BaM-1.0.1/BaM/R/wars-data.R |only BaM-1.0.1/BaM/data/actuarial.rda |binary BaM-1.0.1/BaM/data/adam.jags.rda |only BaM-1.0.1/BaM/data/afghan.deaths.rda |binary BaM-1.0.1/BaM/data/asap.data.list.rda |only BaM-1.0.1/BaM/data/baldus.jags.rda |only BaM-1.0.1/BaM/data/baldus.rda |only BaM-1.0.1/BaM/data/baldus.winbugs.rda |only BaM-1.0.1/BaM/data/elicspend.rda |binary BaM-1.0.1/BaM/data/lunatics.rda |only BaM-1.0.1/BaM/data/marriage.rates.rda |binary BaM-1.0.1/BaM/data/militarydf.rda |only BaM-1.0.1/BaM/data/norr.rda |only BaM-1.0.1/BaM/data/socatt.rda |only BaM-1.0.1/BaM/data/texas.rda |binary BaM-1.0.1/BaM/data/wars.rda |binary BaM-1.0.1/BaM/man/DA_cwp.Rd | 36 ++- BaM-1.0.1/BaM/man/actuarial.Rd | 32 +- BaM-1.0.1/BaM/man/adam.jags.Rd |only BaM-1.0.1/BaM/man/afghan.deaths.Rd | 17 - BaM-1.0.1/BaM/man/africa.Rd | 36 ++- BaM-1.0.1/BaM/man/asap.data.list.Rd |only BaM-1.0.1/BaM/man/baldus.Rd |only BaM-1.0.1/BaM/man/bcp.Rd | 34 +-- BaM-1.0.1/BaM/man/biv.norm.post.Rd | 88 ++++--- BaM-1.0.1/BaM/man/cabinet.duration.Rd |only BaM-1.0.1/BaM/man/child.Rd | 46 +--- BaM-1.0.1/BaM/man/china.wars.Rd | 40 +-- BaM-1.0.1/BaM/man/coal.mining.disasters.Rd | 33 -- BaM-1.0.1/BaM/man/contracep.Rd | 31 +- BaM-1.0.1/BaM/man/dmultinorm.Rd | 30 +- BaM-1.0.1/BaM/man/dp.Rd | 34 ++- BaM-1.0.1/BaM/man/durations.hpd.Rd | 42 ++- BaM-1.0.1/BaM/man/elicspend.Rd | 18 - BaM-1.0.1/BaM/man/ethnic.immigration.Rd | 30 +- BaM-1.0.1/BaM/man/executions.Rd | 25 +- BaM-1.0.1/BaM/man/experts.Rd | 23 +- BaM-1.0.1/BaM/man/expo.gibbs.Rd | 23 +- BaM-1.0.1/BaM/man/expo.metrop.Rd | 40 ++- BaM-1.0.1/BaM/man/fdr.Rd | 23 +- BaM-1.0.1/BaM/man/hanjack.Rd | 48 ++-- BaM-1.0.1/BaM/man/hit.run.Rd | 39 +-- BaM-1.0.1/BaM/man/iq.Rd | 38 +-- BaM-1.0.1/BaM/man/italy.parties.Rd | 16 - BaM-1.0.1/BaM/man/lunatics.Rd |only BaM-1.0.1/BaM/man/marriage.rates.Rd | 22 - BaM-1.0.1/BaM/man/metropolis.Rd | 27 +- BaM-1.0.1/BaM/man/militarydf.Rd |only BaM-1.0.1/BaM/man/nc.sub.dat.Rd |only BaM-1.0.1/BaM/man/norm.known.var.Rd | 29 +- BaM-1.0.1/BaM/man/normal.posterior.summary.Rd | 22 + BaM-1.0.1/BaM/man/norr.Rd |only BaM-1.0.1/BaM/man/opic.Rd | 22 + BaM-1.0.1/BaM/man/pbc.vote.Rd | 65 +---- BaM-1.0.1/BaM/man/plot_walk_G.Rd |only BaM-1.0.1/BaM/man/plot_walk_MH.Rd |only BaM-1.0.1/BaM/man/recidivism.Rd | 24 +- BaM-1.0.1/BaM/man/retail.sales.Rd | 27 +- BaM-1.0.1/BaM/man/rmultinorm.Rd |only BaM-1.0.1/BaM/man/romney.Rd | 32 +- BaM-1.0.1/BaM/man/sir.Rd | 253 +++++++++++----------- BaM-1.0.1/BaM/man/socatt.Rd |only BaM-1.0.1/BaM/man/strikes.Rd | 39 +-- BaM-1.0.1/BaM/man/t_ci_table.Rd |only BaM-1.0.1/BaM/man/terrorism.Rd | 28 +- BaM-1.0.1/BaM/man/texas.Rd | 28 +- BaM-1.0.1/BaM/man/wars.Rd | 54 ++-- 137 files changed, 1525 insertions(+), 1090 deletions(-)
Title: MINimal VALidation for Stoichiometric Reactions
Description: For a given set of stoichiometric reactions, this package evaluates the mass balance and extracts all reactants, products, orphan metabolites, metabolite names and compartments. Also are included some options to check the compound names associated to Chemical Entities of Biological Interest (ChEBI) database <https://www.ebi.ac.uk/chebi>.
Author: Daniel Osorio [aut,cre], Janneth Gonzalez [aut], Andres Pinzon-Velasco
[aut]
Maintainer: Daniel Osorio <dcosorioh@unal.edu.co>
Diff between minval versions 0.3 dated 2016-04-27 and 0.4 dated 2016-05-18
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS | 3 +++ R/products.R | 7 +++---- R/reactants.R | 9 +++------ README.md |only man/minval-package.Rd | 4 ++-- 7 files changed, 21 insertions(+), 21 deletions(-)
Title: GAMLSS Utilities
Description: Extra functions for GAMLSS and others models.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob Rigby <r.rigby@londonmet.ac.uk>, Paul Eilers <p.eilers@erasmusmc.nl>
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.util versions 4.3-2 dated 2015-02-03 and 4.3-4 dated 2016-05-18
DESCRIPTION | 13 +++---- MD5 | 6 +-- NAMESPACE | 95 ++++++++++++++++++++++++++++-------------------------- R/scattersmooth.r | 6 +-- 4 files changed, 62 insertions(+), 58 deletions(-)
Title: Fitting Mixture Distributions with GAMLSS
Description: The main purpose of this package is to allow fitting of
mixture distributions with GAMLSS models.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob
Rigby <r.rigby@londonmet.ac.uk>
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.mx versions 4.3-2 dated 2015-07-28 and 4.3-5 dated 2016-05-18
DESCRIPTION | 8 - MD5 | 19 +- NAMESPACE | 111 +++++++------- R/gamlssMX-10-11-07.R | 143 ++++++++++++++++-- R/gamlssNP.R | 164 +++++++++++++++++---- data/brains.rda |binary data/enzyme.rda |binary man/dMX.Rd | 12 + man/gamlssMX.Rd | 4 man/gamlssNP.Rd | 378 +++++++++++++++++++++++++------------------------- man/plotMP.Rd |only 11 files changed, 527 insertions(+), 312 deletions(-)
Title: Generating and Fitting Truncated `gamlss.family' Distributions
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to defined truncated distributions in
GAMLSS models. The main function gen.trun() generates truncated
version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob
Rigby <r.rigby@londonmet.ac.uk>
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.tr versions 4.3-1 dated 2015-02-03 and 4.3-6 dated 2016-05-18
gamlss.tr-4.3-1/gamlss.tr/R/trun-21-06-13.R |only gamlss.tr-4.3-6/gamlss.tr/DESCRIPTION | 12 ++++++------ gamlss.tr-4.3-6/gamlss.tr/MD5 | 8 ++++---- gamlss.tr-4.3-6/gamlss.tr/NAMESPACE | 7 ++++--- gamlss.tr-4.3-6/gamlss.tr/R/trun.R |only gamlss.tr-4.3-6/gamlss.tr/man/gen.trun.Rd | 2 -- 6 files changed, 14 insertions(+), 15 deletions(-)
Title: Fitting an Interval Response Variable Using `gamlss.family'
Distributions
Description: This is an add-on package to GAMLSS. The purpose of this
package is to allow users to fit interval response variables in
GAMLSS models. The main function gen.cens() generates a
censored version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob
Rigby <r.rigby@londonmet.ac.uk>, Nicoleta Mortan
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.cens versions 4.3-2 dated 2015-07-16 and 4.3-5 dated 2016-05-18
DESCRIPTION | 12 ++--- MD5 | 8 +-- NAMESPACE | 47 ++++++++++---------- R/cens.R | 138 +++++++++++++++++++++++++++++++++++++++++------------------ data/lip.rda |binary 5 files changed, 131 insertions(+), 74 deletions(-)
Title: GAMLSS Data
Description: Data for GAMLSS models.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob
Rigby <r.rigby@londonmet.ac.uk>
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.data versions 4.3-2 dated 2016-01-05 and 4.3-4 dated 2016-05-18
DESCRIPTION | 8 ++-- MD5 | 82 ++++++++++++++++++++++++++---------------------- data/CD4.rda |binary data/LGAclaims.rda |binary data/Mums.rda |binary data/VictimsOfCrime.rda |binary data/acidity.rda |binary data/aep.rda |binary data/aids.rda |binary data/alveolar.rda |binary data/computer.rda |binary data/datalist | 4 ++ data/db.rda |binary data/dbbmi.rda |binary data/fabric.rda |binary data/film30.rda |binary data/film90.rda |binary data/glass.rda |binary data/glasses.RData |binary data/grip.RData |only data/hodges.rda |binary data/hodges1.rda |binary data/leukemia.RData |only data/lice.rda |binary data/margolin.rda |binary data/meta.rda |binary data/mvi.rda |binary data/mviBig.rda |binary data/oil.RData |only data/parzen.rda |binary data/polio.rda |binary data/rent.rda |binary data/rent99.polys.rda |binary data/rent99.rda |binary data/respInf.rda |binary data/species.rda |binary data/stylo.rda |binary data/tensile.rda |binary data/trd.RData |only data/tse.rda |binary data/usair.rda |binary data/vas5.rda |binary man/grip.Rd |only man/leukemia.Rd |only man/oil.Rd |only man/trd.Rd |only 46 files changed, 53 insertions(+), 41 deletions(-)
Title: Distributions to be Used for GAMLSS Modelling
Description: The different distributions used for the response variables in GAMLSS
modelling.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob
Rigby <r.rigby@londonmet.ac.uk> with contributions from
Calliope Akantziliotou, Gillian Heller, Raydonal Ospina
<rospina@ime.usp.br>, Nicoletta Motpan, Fiona McElduff, Vlasios
Voudouris, Majid Djennad, Marco Enea and Alexios Ghalanos.
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.dist versions 4.3-5 dated 2015-07-21 and 4.3-6 dated 2016-05-18
DESCRIPTION | 10 +- MD5 | 10 +- NAMESPACE | 234 +++++++++++++++++++++++++++++----------------------------- R/EGB2.R | 4 R/genFamily.R | 146 ++++++++++++++++++++++++------------ man/IGAMMA.Rd | 10 +- 6 files changed, 232 insertions(+), 182 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting, displaying and checking GAMLSS Models.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss versions 4.3-8 dated 2016-02-08 and 4.4-0 dated 2016-05-18
gamlss-4.3-8/gamlss/R/fitDist17-05-13.R |only gamlss-4.3-8/gamlss/R/qstats-29-12-12.R |only gamlss-4.4-0/gamlss/DESCRIPTION | 10 - gamlss-4.4-0/gamlss/MD5 | 36 ++-- gamlss-4.4-0/gamlss/NAMESPACE | 15 +- gamlss-4.4-0/gamlss/R/fitDist-17-05-13.R | 12 + gamlss-4.4-0/gamlss/R/gamlss.R | 2 gamlss-4.4-0/gamlss/R/p-categorical.R |only gamlss-4.4-0/gamlss/R/pb_goingtozero.R | 224 ++++++++++++------------------- gamlss-4.4-0/gamlss/R/pb_new.R | 2 gamlss-4.4-0/gamlss/R/pbc.R |only gamlss-4.4-0/gamlss/R/qstats.R |only gamlss-4.4-0/gamlss/R/random.R | 8 - gamlss-4.4-0/gamlss/R/ri.R | 217 +++++++++++++++--------------- gamlss-4.4-0/gamlss/R/term.plot-new.R | 6 gamlss-4.4-0/gamlss/inst/doc/NEWS.txt | 29 ++-- gamlss-4.4-0/gamlss/man/bfp.Rd | 219 +++++++++++++++--------------- gamlss-4.4-0/gamlss/man/gamlss.ps.Rd | 5 gamlss-4.4-0/gamlss/man/pcat.Rd |only gamlss-4.4-0/gamlss/man/ps.Rd | 59 +++++--- gamlss-4.4-0/gamlss/man/ri.Rd | 2 gamlss-4.4-0/gamlss/src |only 22 files changed, 426 insertions(+), 420 deletions(-)
Title: Multivariate Exploratory Data Analysis and Data Mining
Description: Exploratory data analysis methods such as principal component methods and clustering.
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson <francois.husson@agrocampus-ouest.fr>
Diff between FactoMineR versions 1.32 dated 2016-02-24 and 1.33 dated 2016-05-18
FactoMineR-1.32/FactoMineR/R/plot.spMCA.R |only FactoMineR-1.32/FactoMineR/R/print.spMCA.R |only FactoMineR-1.32/FactoMineR/R/spMCA.R |only FactoMineR-1.32/FactoMineR/man/plot.spMCA.Rd |only FactoMineR-1.32/FactoMineR/man/print.spMCA.Rd |only FactoMineR-1.32/FactoMineR/man/spMCA.Rd |only FactoMineR-1.33/FactoMineR/DESCRIPTION | 8 +- FactoMineR-1.33/FactoMineR/MD5 | 67 +++++++++++---------- FactoMineR-1.33/FactoMineR/NAMESPACE | 9 +- FactoMineR-1.33/FactoMineR/R/CA.R | 6 + FactoMineR-1.33/FactoMineR/R/FAMD.R | 14 +++- FactoMineR-1.33/FactoMineR/R/HCPC.R | 7 +- FactoMineR-1.33/FactoMineR/R/MCA.R | 25 ++++++- FactoMineR-1.33/FactoMineR/R/MFA.R | 52 +++++++++++----- FactoMineR-1.33/FactoMineR/R/PCA.R | 27 ++++---- FactoMineR-1.33/FactoMineR/R/coord.ellipse.R | 3 FactoMineR-1.33/FactoMineR/R/plot.PCA.R | 16 +++-- FactoMineR-1.33/FactoMineR/R/plotellipses.r | 9 +- FactoMineR-1.33/FactoMineR/R/predict.CA.R |only FactoMineR-1.33/FactoMineR/R/predict.FAMD.R |only FactoMineR-1.33/FactoMineR/R/predict.MCA.R |only FactoMineR-1.33/FactoMineR/R/predict.MFA.R |only FactoMineR-1.33/FactoMineR/R/predict.PCA.R |only FactoMineR-1.33/FactoMineR/R/tab.disjonctif.R | 7 -- FactoMineR-1.33/FactoMineR/build/vignette.rds |binary FactoMineR-1.33/FactoMineR/data/children.rda |binary FactoMineR-1.33/FactoMineR/data/poison.rda |binary FactoMineR-1.33/FactoMineR/data/poison.text.rda |binary FactoMineR-1.33/FactoMineR/inst/CITATION |only FactoMineR-1.33/FactoMineR/inst/doc/FactoMineR.pdf |binary FactoMineR-1.33/FactoMineR/inst/doc/clustering.pdf |binary FactoMineR-1.33/FactoMineR/man/CA.Rd | 6 + FactoMineR-1.33/FactoMineR/man/FAMD.Rd | 2 FactoMineR-1.33/FactoMineR/man/HCPC.Rd | 6 - FactoMineR-1.33/FactoMineR/man/MCA.Rd | 12 ++- FactoMineR-1.33/FactoMineR/man/MFA.Rd | 15 ++-- FactoMineR-1.33/FactoMineR/man/plot.HCPC.Rd | 2 FactoMineR-1.33/FactoMineR/man/plot.PCA.Rd | 4 - FactoMineR-1.33/FactoMineR/man/predict.CA.Rd |only FactoMineR-1.33/FactoMineR/man/predict.FAMD.Rd |only FactoMineR-1.33/FactoMineR/man/predict.MCA.Rd |only FactoMineR-1.33/FactoMineR/man/predict.MFA.Rd |only FactoMineR-1.33/FactoMineR/man/predict.PCA.Rd |only 43 files changed, 191 insertions(+), 106 deletions(-)
Title: Big Data Statistical Analysis for High-Dimensional Models
Description: Big data statistical analysis for high-dimensional models is made possible by modifying lasso.proj() in 'hdi' package by replacing its nodewise-regression with sparse precision matrix computation using 'BigQUIC'.
Author: Ehsan Ullah [aut, cre], Reda Rawi [aut], Lukas Meier [ctb], Ruben Dezeure [ctb], Nicolai Meinshausen [ctb], Martin Maechler [ctb], Peter Buehlmann [ctb], Tingni Sun [ctb]
Maintainer: Ehsan Ullah <eullah@qf.org.qa>
Diff between bastah versions 1.0.3 dated 2016-05-11 and 1.0.5 dated 2016-05-18
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/bastah.R | 10 +++++----- build/partial.rdb |binary man/bastah-package.Rd | 6 +++++- 5 files changed, 18 insertions(+), 14 deletions(-)
Title: Thermal Image Analysis
Description: A collection of functions and routines for inputting thermal
image video files, plotting and converting binary raw data into estimates of
temperature. First published 2015-03-26. Written primarily for research purposes in
biological applications of thermal images. v1 included the base calculations for
converting thermal image binary values to temperatures. v2 included additional equations
for providing heat transfer calculations.
Author: Glenn J. Tattersall
Maintainer: Glenn J. Tattersall <gtatters@brocku.ca>
Diff between Thermimage versions 2.0 dated 2016-05-09 and 2.1 dated 2016-05-18
Thermimage-2.0/Thermimage/R/Grasshof.R |only Thermimage-2.0/Thermimage/R/Nusselforced.R |only Thermimage-2.0/Thermimage/R/Nusselfree.R |only Thermimage-2.0/Thermimage/man/Grasshof.Rd |only Thermimage-2.1/Thermimage/DESCRIPTION | 14 ++-- Thermimage-2.1/Thermimage/MD5 | 60 +++++++++++++++----- Thermimage-2.1/Thermimage/NAMESPACE | 1 Thermimage-2.1/Thermimage/R/Grashof.R |only Thermimage-2.1/Thermimage/R/Ld.R |only Thermimage-2.1/Thermimage/R/Lu.R |only Thermimage-2.1/Thermimage/R/Lw.R |only Thermimage-2.1/Thermimage/R/Nusseltforced.R |only Thermimage-2.1/Thermimage/R/Nusseltfree.R |only Thermimage-2.1/Thermimage/R/Prandtl.R |only Thermimage-2.1/Thermimage/R/Reynolds.R | 2 Thermimage-2.1/Thermimage/R/Te.R |only Thermimage-2.1/Thermimage/R/Tground.R |only Thermimage-2.1/Thermimage/R/areacone.R |only Thermimage-2.1/Thermimage/R/areacylinder.R |only Thermimage-2.1/Thermimage/R/areasphere.R |only Thermimage-2.1/Thermimage/R/forcedparameters.R |only Thermimage-2.1/Thermimage/R/freeparameters.R |only Thermimage-2.1/Thermimage/R/hconv.R |only Thermimage-2.1/Thermimage/R/qabs.R |only Thermimage-2.1/Thermimage/R/qcond.R |only Thermimage-2.1/Thermimage/R/qconv.R |only Thermimage-2.1/Thermimage/R/qrad.R |only Thermimage-2.1/Thermimage/man/Grashof.Rd |only Thermimage-2.1/Thermimage/man/Ld.Rd |only Thermimage-2.1/Thermimage/man/Lu.Rd |only Thermimage-2.1/Thermimage/man/Lw.Rd |only Thermimage-2.1/Thermimage/man/Nusseltforced.Rd | 34 ++++++++--- Thermimage-2.1/Thermimage/man/Nusseltfree.Rd | 44 ++++++++++++-- Thermimage-2.1/Thermimage/man/Prandtl.Rd |only Thermimage-2.1/Thermimage/man/Reynolds.Rd | 17 ++++- Thermimage-2.1/Thermimage/man/StephBoltz.Rd | 7 ++ Thermimage-2.1/Thermimage/man/Te.Rd |only Thermimage-2.1/Thermimage/man/Tground.Rd |only Thermimage-2.1/Thermimage/man/Thermimage-package.Rd | 2 Thermimage-2.1/Thermimage/man/airtconductivity.Rd | 5 + Thermimage-2.1/Thermimage/man/airviscosity.Rd | 5 + Thermimage-2.1/Thermimage/man/areacone.Rd |only Thermimage-2.1/Thermimage/man/areacylinder.Rd |only Thermimage-2.1/Thermimage/man/areasphere.Rd |only Thermimage-2.1/Thermimage/man/forcedparameters.Rd |only Thermimage-2.1/Thermimage/man/freeparameters.Rd |only Thermimage-2.1/Thermimage/man/hconv.Rd |only Thermimage-2.1/Thermimage/man/qabs.Rd |only Thermimage-2.1/Thermimage/man/qcond.Rd |only Thermimage-2.1/Thermimage/man/qconv.Rd |only Thermimage-2.1/Thermimage/man/qrad.Rd |only 51 files changed, 144 insertions(+), 47 deletions(-)
Title: ToxCast Data Analysis Pipeline
Description: A set of tools for processing and modeling high-throughput and
high-content chemical screening data. The package was developed for the
the chemical screening data generated by the US EPA ToxCast program, but
can be used for diverse chemical screening efforts.
Author: Dayne L Filer [aut, cre],
Parth Kothiya [ctb],
Woodrow R Setzer [ctb],
Richard S Judson [ths],
Matthew T Martin [ctb, ths]
Maintainer: Dayne L Filer <dayne.filer@gmail.com>
Diff between tcpl versions 1.2 dated 2016-05-06 and 1.2.2 dated 2016-05-18
DESCRIPTION | 6 +-- MD5 | 8 ++--- NEWS | 12 +++++++ R/plateHeat.R | 70 +++++++++++++++++++++++++-------------------- inst/doc/tcpl_Overview.pdf |binary 5 files changed, 57 insertions(+), 39 deletions(-)
Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Description: Statistical methods for the modeling and monitoring of time series
of counts, proportions and categorical data, as well as for the modeling
of continuous-time point processes of epidemic phenomena.
The monitoring methods focus on aberration detection in count data time
series from public health surveillance of communicable diseases, but
applications could just as well originate from environmetrics,
reliability engineering, econometrics, or social sciences. The package
implements many typical outbreak detection procedures such as the
(improved) Farrington algorithm, or the negative binomial GLR-CUSUM
method of Höhle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>.
A novel CUSUM approach combining logistic and multinomial logistic
modeling is also included. The package contains several real-world data
sets, the ability to simulate outbreak data, and to visualize the
results of the monitoring in a temporal, spatial or spatio-temporal
fashion. A recent overview of the available monitoring procedures is
given by Salmon et al. (2016) <doi:10.18637/jss.v070.i10>.
For the retrospective analysis of epidemic spread, the package provides
three endemic-epidemic modeling frameworks with tools for visualization,
likelihood inference, and simulation. 'hhh4' estimates models for
(multivariate) count time series following Paul and Held (2011)
<doi:10.1002/sim.4177> and Meyer and Held (2014) <doi:10.1214/14-AOAS743>.
'twinSIR' models the susceptible-infectious-recovered (SIR) event
history of a fixed population, e.g, epidemics across farms or networks,
as a multivariate point process as proposed by Höhle (2009)
<doi:10.1002/bimj.200900050>. 'twinstim' estimates self-exciting point
process models for a spatio-temporal point pattern of infective events,
e.g., time-stamped geo-referenced surveillance data, as proposed by
Meyer et al. (2012) <doi:10.1111/j.1541-0420.2011.01684.x>.
A recent overview of the implemented space-time modeling frameworks
for epidemic phenomena is given by Meyer et al. (2015)
<http://arxiv.org/abs/1411.0416>.
Author: Michael Höhle [aut, ths], Sebastian Meyer [aut, cre],
Michaela Paul [aut], Leonhard Held [ctb, ths],
Thais Correa [ctb], Mathias Hofmann [ctb], Christian Lang [ctb],
Juliane Manitz [ctb], Andrea Riebler [ctb], Daniel Sabanés Bové [ctb],
Maëlle Salmon [ctb], Dirk Schumacher [ctb], Stefan Steiner [ctb],
Mikko Virtanen [ctb], Wei Wei [ctb], Valentin Wimmer [ctb], R Core Team [ctb]
(A few code segments are modified versions of code from base R)
Maintainer: Sebastian Meyer <Sebastian.Meyer@ifspm.uzh.ch>
Diff between surveillance versions 1.12.0 dated 2016-04-03 and 1.12.1 dated 2016-05-18
DESCRIPTION | 17 ++--- MD5 | 121 +++++++++++++++++++++------------------ NAMESPACE | 9 -- R/AllGeneric.R | 2 R/LRCUSUM.runlength.R | 6 - R/boda.R | 2 R/bodaDelay.R | 2 R/epidata.R | 8 +- R/hhh4.R | 82 +++++++++++++------------- R/hhh4_W_powerlaw.R | 10 +-- R/hhh4_methods.R | 6 - R/hhh4_plot.R | 10 +-- R/knox.R | 8 +- R/pairedbinCUSUM.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 21 ++++++ inst/NEWS.Rd | 59 +++++++++++++++++-- inst/doc/glrnb.pdf |binary inst/doc/hhh4.pdf |binary inst/doc/hhh4_spacetime.Rnw | 13 ---- inst/doc/hhh4_spacetime.pdf |binary inst/doc/monitoringCounts.R |only inst/doc/monitoringCounts.Rnw |only inst/doc/monitoringCounts.pdf |only inst/doc/surveillance.pdf |binary inst/doc/twinSIR.Rnw | 13 ---- inst/doc/twinSIR.pdf |binary inst/doc/twinstim.Rnw | 13 ---- inst/doc/twinstim.pdf |binary man/R0.Rd | 4 - man/algo.glrnb.Rd | 4 - man/boda.Rd | 4 - man/categoricalCUSUM.Rd | 4 - man/epidataCS.Rd | 8 +- man/farringtonFlexible.Rd | 4 - man/fluBYBW.Rd | 4 - man/hhh4.Rd | 4 - man/hhh4_W.Rd | 4 - man/hhh4_methods.Rd | 2 man/hhh4_plot.Rd | 4 - man/hhh4_update.Rd | 6 + man/imdepi.Rd | 4 - man/knox.Rd | 20 ++++-- man/nowcast.Rd | 2 man/ranef.Rd |only man/stK.Rd | 9 +- man/sts_animate.Rd | 4 - man/twinstim.Rd | 8 +- man/twinstim_epitest.Rd | 9 +- man/twinstim_iaf.Rd | 8 +- man/twinstim_iafplot.Rd | 4 - man/twinstim_simulation.Rd | 8 +- tests/testthat.R | 2 tests/testthat/test-siafs.R | 8 +- tests/testthat/test-tiafs.R | 10 +-- vignettes/hhh4_spacetime.Rnw | 13 ---- vignettes/monitoringCounts-cache |only vignettes/monitoringCounts.Rnw |only vignettes/monitoringCounts.bib |only vignettes/references.bib | 82 ++++++++++++++------------ vignettes/twinSIR.Rnw | 13 ---- vignettes/twinstim.Rnw | 13 ---- 63 files changed, 344 insertions(+), 329 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College Scorecard data
using the public API. It is based on the dplyr model of
piped commands to select and filter data in a single chained function call.
An API key from the U.S. Department of Education is required.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <b.skinner@vanderbilt.edu>
Diff between rscorecard versions 0.2.4 dated 2016-03-26 and 0.2.5 dated 2016-05-18
DESCRIPTION | 6 ++-- MD5 | 11 ++++---- NEWS.md |only R/dictionary.R | 2 - R/sysdata.rda |binary inst/doc/introduction.R | 37 ----------------------------- inst/doc/introduction.html | 57 +++------------------------------------------ 7 files changed, 15 insertions(+), 98 deletions(-)
Title: An Interface to the NOAA Operational Model Archive and
Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman <danny.c.bowman@gmail.com>
Diff between rNOMADS versions 2.2.0 dated 2016-03-21 and 2.3.0 dated 2016-05-18
DESCRIPTION | 14 ++------- MD5 | 11 ++++--- NEWS | 4 ++ R/GetDODS.R | 47 +++++++++++++++++++++++-------- R/RNomadsTools.R | 77 ++++++++++++++++++++++++++++++++++++++++++++++++++-- man/DODSGrab.Rd | 15 ++++++---- man/SubsetNOMADS.Rd |only 7 files changed, 134 insertions(+), 34 deletions(-)
Title: Permutation Based Gene Expression Pathway Analysis
Description: Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).
Author: Ivo D. Shterev [aut, cre],
Kouros Owzar [aut],
Gregory D. Sempowski [aut],
Kenneth Wilder [ctb, cph] (wrote original version of ranker.h)
Maintainer: Ivo D. Shterev <i.shterev@duke.edu>
Diff between permPATH versions 0.5 dated 2016-02-23 and 0.6 dated 2016-05-18
DESCRIPTION | 12 +++++----- MD5 | 21 +++++++++--------- NEWS | 6 +++++ build/vignette.rds |binary inst/doc/permPATHmanual.R | 4 +-- inst/doc/permPATHmanual.Rnw | 8 +++---- inst/doc/permPATHmanual.pdf |binary man/perm.path.Rd | 6 ++--- man/permPath-package.Rd | 34 +++++++++++++++--------------- vignettes/c2.cp.reactome.v4.0.symbols.gmt |only vignettes/permPATHbibl.bib | 2 - vignettes/permPATHmanual.Rnw | 8 +++---- 12 files changed, 54 insertions(+), 47 deletions(-)
Title: Optimal Multilevel Matching using a Network Algorithm
Description: Performs multilevel matches for data with cluster-level treatments and individual-level outcomes using a network optimization algorithm. Functions for checking balance at the cluster and individual levels are also provided, as are methods for permutation-inference-based outcome analysis.
Author: Luke Keele and Sam Pimentel
Maintainer: Sam Pimentel <spi@wharton.upenn.edu>
Diff between matchMulti versions 1.1 dated 2016-02-26 and 1.1.3 dated 2016-05-18
DESCRIPTION | 11 ++++--- MD5 | 23 ++++++++++------ R/matchMultioutcome.R | 66 +++++++++++++++++++++++------------------------ build/partial.rdb |binary build/vignette.rds |only inst |only man/balanceMulti.Rd | 4 +- man/matchMulti.Rd | 5 ++- man/matchMultioutcome.Rd | 3 +- man/matchMultisens.Rd | 5 ++- man/rematchSchools.Rd | 3 +- vignettes |only 12 files changed, 66 insertions(+), 54 deletions(-)
Title: Irucka Embry's Miscellaneous Functions
Description: A collection of Irucka Embry's miscellaneous functions
(Engineering Economics, Environmental/Water Resources Engineering,
Geometry, Statistics, GNU Octave length functions, etc.).
Author: Irucka Embry [aut, cre]. Includes R source code and/or documentation
previously published by: Felix Andrews (zoo) and Hans Werner Borchers
(pracma). [Borrowed from DescTools description.]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between iemisc versions 0.5.0 dated 2016-02-09 and 0.5.1 dated 2016-05-18
iemisc-0.5.0/iemisc/man/lengths.Rd |only iemisc-0.5.1/iemisc/DESCRIPTION | 6 ++-- iemisc-0.5.1/iemisc/MD5 | 38 +++++++++++++++---------------- iemisc-0.5.1/iemisc/NAMESPACE | 2 - iemisc-0.5.1/iemisc/NEWS.md | 9 +++++++ iemisc-0.5.1/iemisc/R/Manningcirc.R | 2 - iemisc-0.5.1/iemisc/R/Manningpara.R | 4 +-- iemisc-0.5.1/iemisc/R/Manningrect.R | 2 - iemisc-0.5.1/iemisc/R/Manningtrap.R | 2 - iemisc-0.5.1/iemisc/R/Manningtri.R | 2 - iemisc-0.5.1/iemisc/R/righttri.R | 2 - iemisc-0.5.1/iemisc/R/size.R | 20 ++++++++-------- iemisc-0.5.1/iemisc/man/Manningcirc.Rd | 2 - iemisc-0.5.1/iemisc/man/Manningpara.Rd | 4 +-- iemisc-0.5.1/iemisc/man/Manningrect.Rd | 2 - iemisc-0.5.1/iemisc/man/Manningtrap.Rd | 2 - iemisc-0.5.1/iemisc/man/Manningtri.Rd | 2 - iemisc-0.5.1/iemisc/man/length_octave.Rd |only iemisc-0.5.1/iemisc/man/numel.Rd | 2 - iemisc-0.5.1/iemisc/man/righttri.Rd | 2 - iemisc-0.5.1/iemisc/man/size.Rd | 2 - 21 files changed, 58 insertions(+), 49 deletions(-)
Title: The Hilbert-Huang Transform: Tools and Methods
Description: Builds on the EMD package to provide additional tools for empirical mode decomposition (EMD) and Hilbert spectral analysis. It also implements the ensemble empirical decomposition (EEMD) and the complete ensemble empirical mode decomposition (CEEMD) methods to avoid mode mixing and intermittency problems found in EMD analysis. The package comes with several plotting methods that can be used to view intrinsic mode functions, the HHT spectrum, and the Fourier spectrum.
Author: Daniel C. Bowman [aut, cre],
Jonathan M. Lees [ctb]
Maintainer: Daniel C. Bowman <danny.c.bowman@gmail.com>
Diff between hht versions 2.1.2 dated 2015-01-21 and 2.1.3 dated 2016-05-18
DESCRIPTION | 18 +++++++----------- MD5 | 8 ++++---- NAMESPACE | 6 ++++++ NEWS | 3 +++ R/empirical_mode_decomposition.R | 12 ++++++------ 5 files changed, 26 insertions(+), 21 deletions(-)