Title: Lake Physics Tools
Description: Standardized methods for calculating common important derived
physical features of lakes including water density based based on
temperature, thermal layers, thermocline depth, lake number, Wedderburn
number, Schmidt stability and others.
Author: Luke Winslow, Jordan Read, Richard Woolway, Jennifer Brentrup, Taylor
Leach, Jake Zwart
Maintainer: Luke Winslow <lawinslow@gmail.com>
Diff between rLakeAnalyzer versions 1.7.6 dated 2015-05-28 and 1.8.3 dated 2016-05-20
rLakeAnalyzer-1.7.6/rLakeAnalyzer/README.md |only rLakeAnalyzer-1.8.3/rLakeAnalyzer/DESCRIPTION | 9 rLakeAnalyzer-1.8.3/rLakeAnalyzer/MD5 | 47 - rLakeAnalyzer-1.8.3/rLakeAnalyzer/NAMESPACE | 8 rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/buoyancy.freq.R | 20 rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/center.buoyancy.R | 82 +- rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/helper.functions.R | 5 rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/internal.energy.R | 4 rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/lake.number.plot.R | 146 +-- rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/layer.temperature.R | 142 +-- rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/schmidt.plot.R | 142 +-- rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/water.density.R | 150 +-- rLakeAnalyzer-1.8.3/rLakeAnalyzer/R/wtr.heatmap.layers.R | 162 ++-- rLakeAnalyzer-1.8.3/rLakeAnalyzer/build/vignette.rds |binary rLakeAnalyzer-1.8.3/rLakeAnalyzer/inst/extdata/Sparkling.daily.wnd | 402 +++++----- rLakeAnalyzer-1.8.3/rLakeAnalyzer/inst/extdata/Sparkling.daily.wtr | 402 +++++----- rLakeAnalyzer-1.8.3/rLakeAnalyzer/inst/extdata/Sparkling.sthermod.tsv |only rLakeAnalyzer-1.8.3/rLakeAnalyzer/inst/extdata/sparkling.thermod.tsv |only rLakeAnalyzer-1.8.3/rLakeAnalyzer/man/buoyancy.freq.Rd | 114 +- rLakeAnalyzer-1.8.3/rLakeAnalyzer/man/center.buoyancy.Rd | 108 +- rLakeAnalyzer-1.8.3/rLakeAnalyzer/man/internal.energy.Rd | 2 rLakeAnalyzer-1.8.3/rLakeAnalyzer/man/layer.temperature.Rd | 94 +- rLakeAnalyzer-1.8.3/rLakeAnalyzer/man/ts.buoyancy.freq.Rd | 130 +-- rLakeAnalyzer-1.8.3/rLakeAnalyzer/man/ts.center.buoyancy.Rd | 122 +-- rLakeAnalyzer-1.8.3/rLakeAnalyzer/man/ts.wedderburn.number.Rd | 152 +-- rLakeAnalyzer-1.8.3/rLakeAnalyzer/tests |only 26 files changed, 1234 insertions(+), 1209 deletions(-)
Title: Wavelet Methods for Time Series Analysis
Description: Software to book Wavelet Methods for Time Series Analysis,
Donald B. Percival and Andrew T. Walden, Cambridge University
Press, 2000.
Author: William Constantine [cre, aut],
Donald Percival [aut]
Maintainer: William Constantine <wlbconstan@gmail.com>
Diff between wmtsa versions 2.0-0 dated 2013-12-30 and 2.0-1 dated 2016-05-20
DESCRIPTION | 20 +++++++++++--------- MD5 | 23 ++++++++++++----------- NAMESPACE | 12 +++++++++++- README.md |only man/holderSpectrum.Rd | 2 +- man/make.signal.Rd | 2 +- man/reconstruct.Rd | 2 +- man/wavBootstrap.Rd | 2 +- man/wavCWTFilters.Rd | 4 ++-- man/wavMRDSum.Rd | 2 +- man/wavShrink.Rd | 4 ++-- man/wavTransform.Rd | 2 +- man/wavVar.Rd | 2 ++ 13 files changed, 46 insertions(+), 31 deletions(-)
Title: Spectral Analysis for Physical Applications
Description: Software for the book Spectral Analysis for Physical
Applications, Donald B. Percival and Andrew T. Walden,
Cambridge University Press, 1993.
Author: William Constantine [cre, aut],
Donald Percival [aut]
Maintainer: William Constantine <wlbconstan@gmail.com>
Diff between sapa versions 2.0-1 dated 2015-02-15 and 2.0-2 dated 2016-05-20
DESCRIPTION | 19 ++++++++++--------- MD5 | 5 +++-- NAMESPACE | 5 +++++ README.md |only 4 files changed, 18 insertions(+), 11 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that the user is probably willing to make: 'import()' and 'export()' determine the data structure from the file extension, reasonable defaults are used for data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is natively supported (including from SSL/HTTPS), compressed files can be read directly without explicit decompression, and fast import packages are used where appropriate.
Author: Jason Becker [ctb],
Chung-hong Chan [aut],
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut, cre],
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.4.3 dated 2016-05-19 and 0.4.5 dated 2016-05-20
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 7 ++++++- R/compression.R | 3 ++- R/gather_attrs.R | 2 +- R/import_methods.R | 1 + R/remote_to_local.R | 9 +++++++-- tests/testthat/test_format_csvy.R | 2 +- tests/testthat/test_format_feather.R | 3 +-- tests/testthat/test_format_fwf.R | 2 +- tests/testthat/test_identical.R | 4 +++- 11 files changed, 37 insertions(+), 24 deletions(-)
Title: Resampling-Based Analysis of Geostatistical Data
Description: Performs parameter estimation for geostatistical data using a resampling-based stochastic approximation (RSA) method.
Author: Yichen Cheng, Faming Liang
Maintainer: Yichen Cheng <yichen.cheng.cc@gmail.com>
Diff between RSAgeo versions 1.1 dated 2016-05-19 and 1.2 dated 2016-05-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/RSAc.c | 8 ++++---- src/lib.c | 1 - 4 files changed, 11 insertions(+), 12 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre],
Paul Nulty [aut],
Kohei Watanabe [ctb],
Benjamin Lauderdale [ctb],
Adam Obeng [ctb],
Pablo Barberá [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.9.6-1 dated 2016-05-09 and 0.9.6-9 dated 2016-05-20
DESCRIPTION | 10 +++---- MD5 | 42 ++++++++++++++++-------------- NAMESPACE | 2 + NEWS | 13 +++++++++ R/converters.R | 16 +++++------ R/corpus.R | 10 +++++-- R/dfm-main.R | 8 ++++- R/dictionaries.R | 25 +++++++++++++----- R/ngrams.R | 4 +- R/phrases.R | 55 ---------------------------------------- R/textfile.R | 2 - R/tokenize.R | 42 ++++++++++++++++++++---------- README.md | 14 +++++++--- inst/doc/LitVignette.html | 38 ++++++++++++--------------- inst/doc/development-plans.html | 7 ++--- inst/doc/quickstart.html | 43 +++++++++++++++---------------- man/convert.Rd | 2 - man/dictionary.Rd | 10 ++++--- man/textfile.Rd | 2 - man/tokenize.Rd | 6 ++++ tests/testthat/testDfm.R | 9 +++++- tests/testthat/testNgrams.R |only tests/testthat/testStopwords.R |only 23 files changed, 186 insertions(+), 174 deletions(-)
Title: Data Generation with Poisson, Binary, Ordinal and Normal
Components
Description: Generation of multiple count, binary, ordinal and normal variables
simultaneously given the marginal characteristics and association structure.
Author: Hakan Demirtas, Yiran Hu, Rawan Allozi
Maintainer: Rawan Allozi <ralloz2@uic.edu>
Diff between PoisBinOrdNor versions 1.1 dated 2016-02-15 and 1.2 dated 2016-05-20
DESCRIPTION | 19 +++--- MD5 | 12 ++-- man/PoisBinOrdNor-package.Rd | 98 +++++++++++++++++----------------- man/corr.nn4bb.Rd | 44 +++++++-------- man/corr.nn4pbo.Rd | 57 ++++++++++---------- man/corr.nn4pp.Rd | 46 ++++++++-------- man/intermat.Rd | 121 +++++++++++++++++++++---------------------- 7 files changed, 198 insertions(+), 199 deletions(-)
Title: Generation of Multivariate Ordinal Variates
Description: A method for multivariate ordinal data generation given marginal distributions and correlation matrix based on the methodology proposed by Demirtas (2006).
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya <aamatya@nmsu.edu>
Diff between MultiOrd versions 2.1 dated 2014-03-06 and 2.2 dated 2016-05-20
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 2 ++ 3 files changed, 9 insertions(+), 7 deletions(-)
Title: Utilities for Producing Maps
Description: A minimal, light-weight set of tools for producing nice looking maps in R, with support for map projections.
Author: Patrick Brown <patrick.brown@utoronto.ca>
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between mapmisc versions 1.4.6 dated 2015-11-27 and 1.5.0 dated 2016-05-20
mapmisc-1.4.6/mapmisc/inst/doc/mapLayers.pdf |only mapmisc-1.4.6/mapmisc/inst/doc/mapLayers.rnw |only mapmisc-1.4.6/mapmisc/tests/north.R |only mapmisc-1.4.6/mapmisc/vignettes/mapLayers.rnw |only mapmisc-1.5.0/mapmisc/DESCRIPTION | 13 - mapmisc-1.5.0/mapmisc/MD5 | 53 ++-- mapmisc-1.5.0/mapmisc/NAMESPACE | 2 mapmisc-1.5.0/mapmisc/R/colourScale.R | 269 +++++++++++++++---------- mapmisc-1.5.0/mapmisc/R/getTiles.R | 144 +++++++++++-- mapmisc-1.5.0/mapmisc/R/gridlinesWrap.R | 6 mapmisc-1.5.0/mapmisc/R/insetMap.R | 64 +++-- mapmisc-1.5.0/mapmisc/R/legendBreaks.R | 21 + mapmisc-1.5.0/mapmisc/R/legendTable.R | 21 + mapmisc-1.5.0/mapmisc/R/openmap.R | 175 +++++++++++----- mapmisc-1.5.0/mapmisc/R/openmapAttribution.R | 63 +++++ mapmisc-1.5.0/mapmisc/R/tonerToTrans.R |only mapmisc-1.5.0/mapmisc/R/utils.R | 59 +++-- mapmisc-1.5.0/mapmisc/build/vignette.rds |binary mapmisc-1.5.0/mapmisc/inst/doc/mapLayers.R |only mapmisc-1.5.0/mapmisc/inst/doc/mapLayers.Rmd |only mapmisc-1.5.0/mapmisc/inst/doc/mapLayers.html |only mapmisc-1.5.0/mapmisc/inst/doc/mapmisc.R |only mapmisc-1.5.0/mapmisc/inst/doc/mapmisc.pdf |binary mapmisc-1.5.0/mapmisc/inst/doc/north.R |only mapmisc-1.5.0/mapmisc/inst/doc/north.Rmd |only mapmisc-1.5.0/mapmisc/inst/doc/north.html |only mapmisc-1.5.0/mapmisc/inst/extdata/tiles.RData |binary mapmisc-1.5.0/mapmisc/man/crsMerc.Rd | 11 - mapmisc-1.5.0/mapmisc/man/scaleBar.Rd | 15 - mapmisc-1.5.0/mapmisc/man/tonerToTrans.Rd |only mapmisc-1.5.0/mapmisc/tests/omerc.R | 24 -- mapmisc-1.5.0/mapmisc/tests/openmap.R | 8 mapmisc-1.5.0/mapmisc/vignettes/Makefile | 24 -- mapmisc-1.5.0/mapmisc/vignettes/mapLayers.Rmd |only mapmisc-1.5.0/mapmisc/vignettes/north.Rmd |only 35 files changed, 649 insertions(+), 323 deletions(-)
Title: Insightful Research Tools
Description: Insightful Research Tools.
Author: William Constantine [cre, aut]
Maintainer: William Constantine <wlbconstan@gmail.com>
Diff between ifultools versions 2.0-1 dated 2014-08-28 and 2.0-4 dated 2016-05-20
DESCRIPTION | 18 +++---- MD5 | 8 ++- NAMESPACE | 139 +++++++++++++++++++++++++++++---------------------------- R/package.R |only README.md |only src/fra_surr.c | 98 +++++++++++++++++++++------------------- 6 files changed, 138 insertions(+), 125 deletions(-)
Title: Generalized Correlations and Initial Causal Path
Description: Asymmetric generalized correlations r*(x|y) measure strength of the
dependence of x on y. If |r*(x|y)|> |r*(y|x)| it suggests that y is more likely
the "kernel cause" of x. There are at least two additional ways of comparing
two kernel regressions helping identify the `cause'.
In simultaneous equation
models where endogeneity of regressors is feared, we can use Prof. Koopmans' method
to ignore endogeneity problems when it kernel causes the dependent variable.
The usual partial correlations can be generalized for the asymmetric matrix of r*'s.
Partial correlations help asses effect of x on y after removing the effect of a
set of variables.
The package provides additional tools for causal assessment,
for printing the causal detections in a clear, comprehensive compact summary form,
for matrix algebra, for outlier detection, and for numerical integration by the
trapezoidal rule, stochastic dominance, etc.
The package has a function for bootstrap-based statistical inference and one
for a heuristic t-test.
Author: Prof. H. D. Vinod, Fordham University, NY.
Maintainer: H. D. Vinod <vinod@fordham.edu>
Diff between generalCorr versions 1.0.0 dated 2016-05-02 and 1.0.1 dated 2016-05-20
DESCRIPTION | 9 - MD5 | 117 ++++++++++--------- NEWS |only R/EuroCrime.R | 10 - R/Panel2Lag.R | 26 ++-- R/PanelLag.R | 27 ++-- R/abs_res.R | 18 +- R/abs_stdapd.R | 24 ++- R/abs_stdres.R | 30 ++-- R/allPairs.R | 212 +++++++++++++++++++--------------- R/bigfp.R | 54 ++++---- R/cofactor.R | 8 - R/comp_portfo2.R | 28 ++-- R/get0outliers.R | 32 ++--- R/gmcmtx0.R | 95 ++++++++------- R/gmcmtxZ.R | 75 ++++++------ R/gmcxy_np.R | 43 ++----- R/heurist.R | 10 - R/kern.R | 47 ++++--- R/minor.R | 42 +++--- R/napair.R | 27 ++-- R/parcor_ijk.R | 57 +++++---- R/parcor_ridg.R | 243 ++++++++++++++++++++++----------------- R/pcause.R | 82 ++++++------- R/prelec2.R | 40 +----- R/rstar.R | 38 +++--- R/some0Pairs.R | 316 +++++++++++++++++++++++++++++----------------------- R/somePairs.R | 189 ++++++++++++++++--------------- R/sort_matrix.R | 16 +- R/stdz_xy.R | 16 +- R/stochdom2.R | 61 +++++----- R/wtdpapb.R | 72 ++++++----- build |only inst |only man/EuroCrime.Rd | 8 - man/Panel2Lag.Rd | 4 man/PanelLag.Rd | 6 man/abs_res.Rd | 4 man/abs_stdres.Rd | 6 man/allPairs.Rd | 39 +++--- man/bigfp.Rd | 23 ++- man/comp_portfo2.Rd | 8 - man/gmcmtx0.Rd | 26 ++-- man/gmcmtxZ.Rd | 12 - man/gmcxy_np.Rd | 23 --- man/heurist.Rd | 2 man/kern.Rd | 23 +-- man/minor.Rd | 10 - man/napair.Rd | 8 - man/parcor_ijk.Rd | 21 +-- man/parcor_ridg.Rd | 68 +++++++---- man/pcause.Rd | 29 ++-- man/prelec2.Rd | 19 --- man/rstar.Rd | 16 +- man/some0Pairs.Rd | 60 +++++---- man/somePairs.Rd | 35 ++--- man/sort_matrix.Rd | 9 - man/stdz_xy.Rd | 8 - man/stochdom2.Rd | 37 +++--- man/wtdpapb.Rd | 28 ++-- vignettes |only 61 files changed, 1385 insertions(+), 1211 deletions(-)
Title: Fractal Time Series Modeling and Analysis
Description: Stochastic fractal and deterministic chaotic time series
analysis.
Author: William Constantine [cre, aut],
Donald Percival [aut]
Maintainer: William Constantine <wlbconstan@gmail.com>
Diff between fractal versions 2.0-0 dated 2014-01-03 and 2.0-1 dated 2016-05-20
fractal-2.0-0/fractal/inst/fractal.chm |only fractal-2.0-1/fractal/DESCRIPTION | 17 +++++++++-------- fractal-2.0-1/fractal/MD5 | 6 +++--- fractal-2.0-1/fractal/NAMESPACE | 12 ++++++++++++ fractal-2.0-1/fractal/README.md |only 5 files changed, 24 insertions(+), 11 deletions(-)
Title: Compare Two ROC Curves that Intersect
Description: Comparison of two ROC curves through the methodology proposed by Ana C. Braga.
Author: Ana C. Braga with contributions from Hugo Frade, Sara Carvalho and Andre M. Santiago
Maintainer: Ana C. Braga <acb@dps.uminho.pt>; Andre M. Santiago <andreportugalsantiago@gmail.com>
Diff between Comp2ROC versions 1.1 dated 2015-04-30 and 1.1.2 dated 2016-05-20
DESCRIPTION | 14 MD5 | 32 +- NAMESPACE | 9 R/comp.roc.delong.R | 268 ++++++++++-------- R/read.file.R | 150 +++++----- R/roc.curves.boot.R | 571 ++++++++++++++++++++++------------------ R/rocboot.summary.R | 70 ++-- data/zhang.rda |binary man/Comp2ROC-package.Rd | 85 ++--- man/comp.roc.delong.Rd | 125 ++++---- man/lineslope.Rd | 62 ++-- man/read.file.Rd | 149 +++++----- man/read.manually.introduced.Rd | 126 ++++---- man/roc.curves.boot.Rd | 145 +++++----- man/roc.curves.plot.Rd | 104 +++---- man/rocboot.summary.Rd | 80 ++--- man/save.file.summary.Rd | 102 +++---- 17 files changed, 1104 insertions(+), 988 deletions(-)
Title: A Method for Creating Xylophone-Like Frequency Density Plots
Description: A method for creating vertical histograms sharing a y-axis using
base graphics.
Author: Daniel Greene
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between xyloplot versions 1.0 dated 2016-03-24 and 1.1 dated 2016-05-20
DESCRIPTION | 8 ++--- MD5 | 13 +++++---- NAMESPACE | 5 +++ NEWS.md |only R/functions.R | 65 ++++++++++++++++++++++++++++++++++++++++------ man/xyloplot.Rd | 11 ++++++- man/xyloplot.character.Rd |only man/xyloplot.factor.Rd |only man/xyloplot.list.Rd | 11 +++++-- 9 files changed, 91 insertions(+), 22 deletions(-)
Title: Supplemental S-PLUS Functionality in R
Description: Currently there are many functions in S-PLUS that are
missing in R. To facilitate the conversion of S-PLUS packages
to R packages, this package provides some missing S-PLUS
functionality in R.
Author: William Constantine, Tim Hesterberg, Knut Wittkowski, Tingting
Song, Stephen Kaluzny
Maintainer: Stephen Kaluzny <skaluzny@tibco.com>
Diff between splus2R versions 1.2-0 dated 2013-07-11 and 1.2-1 dated 2016-05-20
DESCRIPTION | 15 +++++++-------- MD5 | 5 +++-- NAMESPACE | 3 ++- README.md |only 4 files changed, 12 insertions(+), 11 deletions(-)
Title: Pattern Oriented Modelling Information Criterion
Description: Calculations of an information criterion are proposed to check the quality of simulations results of ABM/IBM or other non-linear rule-based models. The POMDEV measure is based on the KL divergence and likelihood theory. It basically indicates the deviance of simulation results from field observations. Once POMDEV scores and metropolis-hasting sampling on different model versions are effectuated, POMIC scores can be calculated. This method is still under development and further work are needed for the incorporation of multiple patterns assessment.
Author: Cyril Piou [aut, cre]
Maintainer: Cyril Piou <piou.cyril@yahoo.fr>
Diff between Pomic versions 1.0.2 dated 2014-01-31 and 1.0.3 dated 2016-05-20
DESCRIPTION | 15 ++++++++------- MD5 | 10 +++++----- NAMESPACE | 5 ++--- NEWS | 4 ++++ inst/CITATION | 6 +++--- man/Pomic-package.Rd | 6 +++--- 6 files changed, 25 insertions(+), 21 deletions(-)
Title: R Client for the Microsoft Cognitive Services Web Language Model
REST API
Description: R Client for the Microsoft Cognitive Services Web Language Model
REST API, including Break Into Words, Calculate Conditional
Probability, Calculate Joint Probability, Generate Next Words, and List
Available Models. A valid account MUST be registered at the Microsoft
Cognitive Services website <https://www.microsoft.com/cognitive-services/>
in order to obtain a (free) API key. Without an API key, this package will
not work properly.
Author: Phil Ferriere [aut, cre]
Maintainer: Phil Ferriere <pferriere@hotmail.com>
Diff between mscsweblm4r versions 0.1.0 dated 2016-05-18 and 0.1.1 dated 2016-05-20
DESCRIPTION | 13 +++++++------ MD5 | 12 +++++++----- NEWS.md |only README.md |only inst/doc/mscsweblm4r_vignette.R | 4 ++-- inst/doc/mscsweblm4r_vignette.Rmd | 8 ++++++-- inst/doc/mscsweblm4r_vignette.html | 8 ++++++-- vignettes/mscsweblm4r_vignette.Rmd | 8 ++++++-- 8 files changed, 34 insertions(+), 19 deletions(-)
Title: Dental Surface Complexity Measurement Tools
Description: Surface topography calculations of Dirichlet's normal energy,
relief index, and orientation patch count for teeth using scans of enamel caps.
Importantly, for the relief index and orientation patch count calculations to
work, the scanned tooth files must be oriented with the occlusal plane parallel
to the x and y axes, and perpendicular to the z axis. The files should also be
simplified, and smoothed in some other software prior to uploading into R.
Author: James D. Pampush [aut, cre, cph],
Julia M. Winchester [aut, cph],
Paul E. Morse [aut, cph],
Alexander Q. Vining [aut, cph]
Maintainer: James D. Pampush <jdpampush@gmail.com>
Diff between molaR versions 3.2 dated 2016-04-23 and 4.0 dated 2016-05-20
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/DNE.R | 2 +- R/OPC.R | 2 +- R/OPCr.R | 4 ++-- R/RFI.R | 2 +- R/molaR_Batch.R | 8 ++++++-- R/molaR_Clean.R | 12 ++++++------ build/molaR.pdf |binary man/molaR_Batch.Rd | 2 +- 10 files changed, 30 insertions(+), 26 deletions(-)
Title: Tools for Data Handling and Analysis in Macroecology
Description: R functions for handling, processing, and analyzing geographic
data on species' distributions and environmental variables as well as species'
description and conservation information.
Author: Bruno Vilela & Fabricio Villalobos
Maintainer: Bruno Vilela <brunovilelasilva@hotmail.com>
Diff between letsR versions 2.4 dated 2015-11-24 and 2.5 dated 2016-05-20
DESCRIPTION | 12 MD5 | 206 +++++------ NAMESPACE | 105 ++--- R/Data_helps.R | 92 ++-- R/PresenceAbsence-class.R | 120 +++--- R/getcode.R | 84 ++-- R/getnames.R | 80 ++-- R/letsR-package.R | 118 +++--- R/lets_addpoly.R | 200 +++++----- R/lets_addvar.R | 174 ++++----- R/lets_classvar.R | 140 +++---- R/lets_correl.R | 516 +++++++++++++-------------- R/lets_distmat.R | 106 ++--- R/lets_field.R | 268 +++++++------- R/lets_gridirizer.R | 76 ++-- R/lets_iucn.R | 404 ++++++++++----------- R/lets_iucn_habitats.R | 272 +++++++------- R/lets_iucn_historic.R | 442 +++++++++++------------ R/lets_iucncont.R | 134 +++---- R/lets_maplizer.R | 178 ++++----- R/lets_midpoint.R | 182 ++++----- R/lets_overlap.R | 216 +++++------ R/lets_pamcrop.R | 124 +++--- R/lets_presab.R | 548 ++++++++++++++--------------- R/lets_presab_birds.R | 580 +++++++++++++++---------------- R/lets_presab_grid.R | 290 +++++++-------- R/lets_presab_points.R | 306 ++++++++-------- R/lets_rangesize.R | 256 ++++++------- R/lets_shpfilter.R | 184 ++++----- R/lets_subsetPAM.R | 150 ++++---- R/lets_summaryze.R | 146 +++---- R/lets_transf.R | 92 ++-- R/plot_PresenceAbsence.R | 144 +++---- R/print_PresenceAbsence.R | 46 +- R/print_summary_PresenceAbsence.R | 70 +-- R/removecells.R | 26 - R/removesp.R | 34 - R/summary_PresenceAbsence.R | 100 ++--- R/unicas.R | 64 +-- README.md | 134 +++---- inst/CITATION | 30 - man/IUCN.Rd | 28 - man/PAM.Rd | 34 - man/Phyllomedusa.Rd | 36 - man/PresenceAbsence.Rd | 120 +++--- man/lets.addpoly.Rd | 102 ++--- man/lets.addvar.Rd | 110 ++--- man/lets.classvar.Rd | 98 ++--- man/lets.correl.Rd | 114 +++--- man/lets.distmat.Rd | 80 ++-- man/lets.field.Rd | 122 +++--- man/lets.gridirizer.Rd | 80 ++-- man/lets.iucn.Rd | 98 ++--- man/lets.iucn.ha.Rd | 94 ++--- man/lets.iucn.his.Rd | 150 ++++---- man/lets.iucncont.Rd | 126 +++--- man/lets.maplizer.Rd | 112 ++--- man/lets.midpoint.Rd | 82 ++-- man/lets.overlap.Rd | 106 ++--- man/lets.pamcrop.Rd | 96 ++--- man/lets.presab.Rd | 230 ++++++------ man/lets.presab.birds.Rd | 236 ++++++------ man/lets.presab.grid.Rd | 170 ++++----- man/lets.presab.points.Rd | 178 ++++----- man/lets.rangesize.Rd | 134 +++---- man/lets.shFilter.Rd | 120 +++--- man/lets.subsetPAM.Rd | 92 ++-- man/lets.summarizer.Rd | 100 ++--- man/lets.transf.Rd | 78 ++-- man/letsR-package.Rd | 118 +++--- man/plot.PresenceAbsence.Rd | 86 ++-- man/print.PresenceAbsence.Rd | 40 +- man/print.summary.PresenceAbsence.Rd | 40 +- man/summary.PresenceAbsence.Rd | 40 +- man/temp.Rd | 40 +- tests/test-all.R | 2 tests/testthat/test-TimLucas.r | 182 ++++----- tests/testthat/test-lets_addpoly.R | 40 +- tests/testthat/test-lets_addvar.R | 82 ++-- tests/testthat/test-lets_classvar.R | 76 ++-- tests/testthat/test-lets_correl.R | 118 +++--- tests/testthat/test-lets_distmat.R | 88 ++-- tests/testthat/test-lets_field.R | 124 +++--- tests/testthat/test-lets_gridirizer.R | 26 - tests/testthat/test-lets_iuccont.R | 42 +- tests/testthat/test-lets_iucn.R | 62 +-- tests/testthat/test-lets_iucn_ha.R | 62 +-- tests/testthat/test-lets_iucn_his.R | 62 +-- tests/testthat/test-lets_maplizer.R | 58 +-- tests/testthat/test-lets_midpoint.R | 46 +- tests/testthat/test-lets_overlap.R | 140 +++---- tests/testthat/test-lets_pamcrop.R | 74 +-- tests/testthat/test-lets_presab.R | 254 ++++++------- tests/testthat/test-lets_presab_birds.R | 268 +++++++------- tests/testthat/test-lets_presab_grid.R | 36 - tests/testthat/test-lets_presab_points.R | 196 +++++----- tests/testthat/test-lets_rangesize.R | 158 ++++---- tests/testthat/test-lets_subsetPAM.R | 90 ++-- tests/testthat/test-lets_summarizer.R | 82 ++-- tests/testthat/test-lets_transf.R | 36 - tests/testthat/test-printplotsummary.R | 44 +- tests/testthat/test-removecells.R | 28 - tests/testthat/test-removesp.R | 28 - tests/testthat/test-unicas.R | 34 - 104 files changed, 6746 insertions(+), 6731 deletions(-)
Title: Variable Selection for Supervised Classification in High
Dimension
Description: The functions provided in the FADA (Factor Adjusted Discriminant Analysis) package aim at performing supervised classification of high-dimensional and correlated profiles. The procedure combines a decorrelation step based on a
factor modeling of the dependence among covariates and a classification method. The available methods are Lasso regularized logistic model
(see Friedman et al. (2010)), sparse linear discriminant analysis (see
Clemmensen et al. (2011)), shrinkage linear and diagonal discriminant
analysis (see M. Ahdesmaki et al. (2010)). More methods of classification can be used on the decorrelated data provided by the package FADA.
Author: Emeline Perthame (INRIA, Grenoble, France), Chloe Friguet
(Universite de Bretagne Sud, Vannes, France) and David Causeur (Agrocampus
Ouest, Rennes, France)
Maintainer: David Causeur <david.causeur@agrocampus-ouest.fr>
Diff between FADA versions 1.3.1 dated 2016-05-06 and 1.3.2 dated 2016-05-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/FADA.R | 8 ++++---- R/func.R | 23 ++++++++++++++++++----- 4 files changed, 29 insertions(+), 16 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression are covered in
this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>
Diff between sdcTable versions 0.21.0 dated 2016-05-13 and 0.21.5 dated 2016-05-20
DESCRIPTION | 8 ++-- MD5 | 8 ++-- R/methods_class_sdcProblem.r | 30 +++++++++------ R/methods_multiple_classes.r | 83 ++++++++++++++++++++++++++++++------------- inst/doc/sdcTable.pdf |binary 5 files changed, 84 insertions(+), 45 deletions(-)
Title: R Fortunes
Description: A collection of fortunes from the R community.
Author: Achim Zeileis (R code) and the R community (fortunes).
Contributions (fortunes and/or code) by Torsten Hothorn,
Peter Dalgaard, Uwe Ligges, Kevin Wright, Martin Maechler,
Kjetil Brinchmann Halvorsen, Kurt Hornik, Duncan Murdoch,
Andy Bunn, Ray Brownrigg, Roger Bivand, Spencer Graves,
Jim Lemon, Christian Kleiber, David L. Reiner,
Berton Gunter, Roger Koenker, Charles Berry, Marc Schwartz,
Michael Dewey, Ben Bolker, Peter Dunn, Sarah Goslee, Simon
Blomberg, Bill Venables, Roland Rau, Thomas Petzoldt, Rolf
Turner, Mark Leeds, Emmanuel Charpentier, Chris Evans, Paolo
Sonego, Peter Ehlers, Detlef Steuer, Tal Galili, Greg Snow,
Brian D. Ripley, Michael Sumner, David Winsemius, Liviu
Andronic, Brian Diggs, Matthieu Stigler, Michael Friendly,
Dirk Eddelbuettel, Richard M. Heiberger, Patrick Burns,
Dieter Menne, Andrie de Vries, Barry Rowlingson, Renaud
Lancelot, R. Michael Weylandt, Jon Olav Skoien, Francois
Morneau, Antony Unwin, Joshua Wiley, Terry Therneau, Bryan
Hanson, Henrik Singmann, Eduard Szoecs, Gregor Passolt,
John C. Nash.
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between fortunes versions 1.5-2 dated 2013-12-14 and 1.5-3 dated 2016-05-20
DESCRIPTION | 15 ++++++++------- MD5 | 16 ++++++++-------- build/vignette.rds |binary inst/doc/fortunes.R | 2 +- inst/doc/fortunes.Rnw | 10 +++++++++- inst/doc/fortunes.pdf |binary inst/fortunes/fortunes.csv | 25 ++++++++++++++++++++++--- man/fortunes.Rd | 10 +++++----- vignettes/fortunes.Rnw | 10 +++++++++- 9 files changed, 62 insertions(+), 26 deletions(-)
Title: Random Ferns Classifier
Description: An R implementation of the random ferns classifier by Ozuysal et
al., modified for generic and multi-label classification and featuring OOB
error approximation and importance measure.
Author: Miron B. Kursa
Maintainer: Miron B. Kursa <M.Kursa@icm.edu.pl>
Diff between rFerns versions 2.0.0 dated 2015-12-03 and 2.0.1 dated 2016-05-20
DESCRIPTION | 12 ++++++++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 2 +- R/ferns.R | 2 +- R/tools.R | 40 +++++++++++++++++++++++++++------------- inst/NEWS | 6 ++++++ man/merge.rFerns.Rd | 2 +- man/predict.rFerns.Rd | 2 +- man/rFerns.Rd | 2 +- src/fern.h | 2 +- src/ferns.c | 20 ++++++++++++++++---- src/forest.h | 2 +- src/tools.h | 2 +- 13 files changed, 77 insertions(+), 41 deletions(-)
Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken.beath@mq.edu.au>
Diff between randomLCA versions 1.0-6 dated 2015-12-08 and 1.0-8 dated 2016-05-20
DESCRIPTION | 10 MD5 | 12 R/fitAdaptRandom.R | 537 ++++++++++++++++---------------- R/fitAdaptRandom2.R | 736 +++++++++++++++++++++++---------------------- R/randomLCA.R | 346 ++++++++++----------- inst/NEWS | 10 src/bernoulliprobrandom2.c | 35 +- 7 files changed, 865 insertions(+), 821 deletions(-)
Title: A Flexible Container to Transport and Manipulate Data and
Associated Resources
Description: Provides a flexible container to transport and
manipulate complex sets of data. These data may consist of multiple data files and
associated meta data and ancillary files. Individual data objects have
associated system level meta data, and data files are linked together using
the OAI-ORE standard resource map which describes the relationships between the files.
The OAI-ORE standard is described at <https://www.openarchives.org/ore>. Data packages
can be serialized and transported as structured files that have been created following
the BagIt specification. The BagIt specification is described at
<https://tools.ietf.org/html/draft-kunze-bagit-08>.
Author: Matthew B. Jones [aut, cre],
Peter Slaughter [aut],
Regents of the University of California [cph]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Diff between datapack versions 1.0.0 dated 2016-03-24 and 1.0.1 dated 2016-05-20
DESCRIPTION | 8 ++-- MD5 | 39 ++++++++++++------------ NEWS | 12 +++++++ R/DataObject.R | 2 + R/DataPackage.R | 37 ++++++++++++++-------- R/ResourceMap.R | 59 +++++++++++++++++++----------------- R/SystemMetadata.R | 24 +++++++++++--- README.md | 60 ++++--------------------------------- build/vignette.rds |binary inst/doc/datapack-overview.R | 36 +++++++++++----------- inst/doc/datapack-overview.Rmd | 14 ++++---- inst/doc/datapack-overview.html | 26 ++++++---------- inst/testfiles/sysmeta-updated.xml |only inst/tests/test.SystemMetadata.R | 14 ++++++++ inst/tests/test_DataPackage.R | 26 +++++++++++++++- man/DataObject-class.Rd | 2 + man/recordDerivation.Rd | 2 - man/serializePackage.Rd | 19 ++++++----- man/serializeRDF.Rd | 2 - man/serializeToBagIt.Rd | 2 + vignettes/datapack-overview.Rmd | 14 ++++---- 21 files changed, 218 insertions(+), 180 deletions(-)