Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports Cox-PH, proportional odds, and accelerated failure time models. Allows for both semi and fully parametric models (parametric only for accelerated failure time models). Includes functions for easy visual diagnostics of model fits and imputation of censored data.
Author: Clifford Anderson-Bergman; uses Marloes Maathuis's HeightMap algorithm (MLEcens::reduc)
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>
Diff between icenReg versions 1.3.4 dated 2016-03-19 and 1.3.5 dated 2016-05-22
DESCRIPTION | 10 - MD5 | 36 ++++-- NEWS | 6 + R/Utilities.R | 8 + R/referenceClasses.R | 3 R/user_functions.R | 72 +++++++++---- build |only inst |only man/diag_covar.Rd | 2 man/ic_par.Rd | 4 man/imputeCens.Rd | 2 src/icenReg.cpp | 3 src/icenReg_files/ic_par.cpp | 120 ++++++++++------------ src/icenReg_files/ic_par.h | 20 ++- src/icenReg_files/ic_par_aft.cpp |only src/icenReg_files/ic_par_aft.h |only src/icenReg_files/ic_sp_ch.cpp | 67 +++++++++++- src/icenReg_files/ic_sp_ch.h | 14 +- src/icenReg_files/ic_sp_gradDescent.cpp | 171 ++++++++++++++++++++++++++++++-- vignettes |only 20 files changed, 395 insertions(+), 143 deletions(-)
Title: Nonlinear Time Series Models with Regime Switching
Description: Implements nonlinear autoregressive (AR) time series models. For univariate series, a non-parametric approach is available through additive nonlinear AR. Parametric modeling and testing for regime switching dynamics is available when the transition is either direct (TAR: threshold AR) or smooth (STAR: smooth transition AR, LSTAR). For multivariate series, one can estimate a range of TVAR or threshold cointegration TVECM models with two or three regimes. Tests can be conducted for TVAR as well as for TVECM (Hansen and Seo 2002 and Seo 2006).
Author: Antonio Fabio Di Narzo [aut],
Jose Luis Aznarte [ctb],
Matthieu Stigler [aut, cre]
Maintainer: Matthieu Stigler <Matthieu.Stigler@gmail.com>
Diff between tsDyn versions 0.9-43 dated 2015-04-24 and 0.9-44 dated 2016-05-22
DESCRIPTION | 10 MD5 | 47 NAMESPACE | 19 R/TVAR_LRtest.R | 55 R/TVARestim.R | 16 R/VAR.sim.R | 15 R/coefECT.R | 20 R/lineVar.R | 66 R/misc.R | 4 R/nlVar-methods.R | 9 R/vcov.R |only R/vec2var.tsDyn.R | 1 build/vignette.rds |binary data/barry.rda |binary data/zeroyld.rda |binary inst/CITATION | 4 inst/ChangeLog | 10 inst/doc/ThCointOverview.pdf |binary inst/doc/tsDyn.pdf |binary tests/00SetarAndFriends.R | 3 tests/00SetarAndFriends.Rout.save | 191 + tests/TVECM.sim.Rout.save | 4 tests/VAR.R | 13 tests/VAR.Rout.save | 4585 ++++++++++++++++++++++++++++++++++++-- tests/VECM.Rout.save | 6 25 files changed, 4829 insertions(+), 249 deletions(-)
Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetTDData versions 1.2.1 dated 2016-05-04 and 1.2.2 dated 2016-05-22
DESCRIPTION | 6 - MD5 | 24 ++--- NEWS.md | 5 + R/gtdd_download_TD_data.R | 91 +++++++++++++++----- R/gtdd_read_TD_files.R | 69 +++++++++++++-- build/vignette.rds |binary inst/doc/gtdd-vignette.R | 15 ++- inst/doc/gtdd-vignette.Rmd | 19 ++-- inst/doc/gtdd-vignette.html | 193 ++++++++++++++++++++++---------------------- man/download.TD.data.Rd | 83 +++++++++--------- man/read.TD.files.Rd | 82 +++++++++--------- tests/testthat/test_gtdd.R | 4 vignettes/gtdd-vignette.Rmd | 19 ++-- 13 files changed, 364 insertions(+), 246 deletions(-)
Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a development/production release paradigm. Introduces a
generalized package installation process which supports multiple repository
and non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.10.13 dated 2016-05-12 and 0.10.14 dated 2016-05-22
DESCRIPTION | 6 ++--- MD5 | 12 +++++------ build/vignette.rds |binary inst/doc/switchrvign.R | 49 ++++++++++++++++++++++++++++++---------------- inst/doc/switchrvign.Rnw | 30 ++++++++++++++++++++++++++++ inst/doc/switchrvign.pdf |binary vignettes/switchrvign.Rnw | 30 ++++++++++++++++++++++++++++ 7 files changed, 101 insertions(+), 26 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that the user is probably willing to make: 'import()' and 'export()' determine the data structure from the file extension, reasonable defaults are used for data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is natively supported (including from SSL/HTTPS), compressed files can be read directly without explicit decompression, and fast import packages are used where appropriate.
Author: Jason Becker [ctb],
Chung-hong Chan [aut],
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut, cre],
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.4.5 dated 2016-05-20 and 0.4.6 dated 2016-05-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/compression.R | 3 ++- tests/testthat/test_compress.R | 6 +++--- 4 files changed, 12 insertions(+), 11 deletions(-)
Title: Item Maker
Description: This is an Automatic Item Generator for Psychological Testing. It is recommended for research purposes only.
Author: Diego Blum [aut, cre]
Maintainer: Diego Blum <blumworx@gmail.com>
Diff between IMak versions 1.1.1 dated 2016-03-21 and 1.1.2 dated 2016-05-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/plotfa.R | 2 +- man/IMak.Rd | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Amazon Web Services Request Signatures
Description: Generates request signatures for Amazon Web Services (AWS) APIs.
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between aws.signature versions 0.2.0 dated 2015-12-21 and 0.2.2 dated 2016-05-22
DESCRIPTION | 10 +++++----- MD5 | 20 +++++++++++--------- NAMESPACE | 2 ++ NEWS | 8 ++++++++ R/v2.R |only R/v4.R | 6 ++++++ README.md | 31 +++++++++++++++++++++++++------ man/authorization.Rd | 2 +- man/aws.signature-package.Rd | 2 +- man/v2.Rd |only man/v4.Rd | 2 +- tests/testthat/tests.R | 43 +++++++++++++++++++++++++++++++++++++++++++ 12 files changed, 103 insertions(+), 23 deletions(-)
Title: Shrinkage Covariance Matrix Estimators
Description: Provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis <A.Touloumis@brighton.ac.uk>
Diff between ShrinkCovMat versions 1.1.1 dated 2015-09-08 and 1.1.2 dated 2016-05-22
ShrinkCovMat-1.1.1/ShrinkCovMat/R/covmat.R |only ShrinkCovMat-1.1.1/ShrinkCovMat/R/covmat.default.R |only ShrinkCovMat-1.1.1/ShrinkCovMat/R/print.covmat.R |only ShrinkCovMat-1.1.2/ShrinkCovMat/DESCRIPTION | 8 ShrinkCovMat-1.1.2/ShrinkCovMat/MD5 | 34 +- ShrinkCovMat-1.1.2/ShrinkCovMat/NAMESPACE | 2 ShrinkCovMat-1.1.2/ShrinkCovMat/R/print.shrinkcovmathat.R |only ShrinkCovMat-1.1.2/ShrinkCovMat/R/shrinkcovmat.equal.R | 91 +++--- ShrinkCovMat-1.1.2/ShrinkCovMat/R/shrinkcovmat.identity.R | 88 +++--- ShrinkCovMat-1.1.2/ShrinkCovMat/R/shrinkcovmat.unequal.R | 143 ++++++--- ShrinkCovMat-1.1.2/ShrinkCovMat/R/shrinkcovmathat.R |only ShrinkCovMat-1.1.2/ShrinkCovMat/R/shrinkcovmathat.default.R |only ShrinkCovMat-1.1.2/ShrinkCovMat/R/targetselection.R | 161 +++++++---- ShrinkCovMat-1.1.2/ShrinkCovMat/inst/CITATION | 6 ShrinkCovMat-1.1.2/ShrinkCovMat/inst/NEWS | 7 ShrinkCovMat-1.1.2/ShrinkCovMat/man/ShrinkCovMat-package.Rd | 27 - ShrinkCovMat-1.1.2/ShrinkCovMat/man/colon.Rd | 7 ShrinkCovMat-1.1.2/ShrinkCovMat/man/shrinkcovmat.equal.Rd | 21 - ShrinkCovMat-1.1.2/ShrinkCovMat/man/shrinkcovmat.identity.Rd | 20 - ShrinkCovMat-1.1.2/ShrinkCovMat/man/shrinkcovmat.unequal.Rd | 20 - ShrinkCovMat-1.1.2/ShrinkCovMat/man/targetselection.Rd | 13 21 files changed, 384 insertions(+), 264 deletions(-)
Title: Relabelling MCMC Outputs of Mixture Models
Description: The Bayesian estimation of mixture models (and more general hidden Markov models) suffers from the label switching phenomenon, making the MCMC output non-identifiable. This package can be used in order to deal with this problem using various relabelling algorithms.
Author: Panagiotis Papastamoulis
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between label.switching versions 1.5 dated 2016-02-01 and 1.6 dated 2016-05-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/relabelling_algorithms.R | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
More information about label.switching at CRAN
Permanent link
Title: Animal Social Network Inference and Permutations for Ecologists
Description: Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.
Author: Damien R. Farine <dfarine@orn.mpg.de>
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>
Diff between asnipe versions 0.90 dated 2016-04-08 and 0.91 dated 2016-05-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/network_permutation.R | 4 ++-- R/network_swap.R | 4 ++-- man/asnipe-package.Rd | 4 ++-- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Software for Project AERO
Description: Implements methods for anticipating the emergence and eradication
of infectious diseases from surveillance time series. Also provides support
for computational experiments testing the performance of such methods.
Author: Eamon O'Dea [aut, cre]
Maintainer: Eamon O'Dea <odea35@gmail.com>
Diff between spaero versions 0.1.0 dated 2016-04-06 and 0.1.1 dated 2016-05-22
spaero-0.1.0/spaero/inst/doc/spaero-introduction.R |only spaero-0.1.1/spaero/DESCRIPTION | 12 +- spaero-0.1.1/spaero/MD5 | 24 ++-- spaero-0.1.1/spaero/NEWS.md |only spaero-0.1.1/spaero/R/analysis.R | 58 ++++++---- spaero-0.1.1/spaero/R/simulation.R | 2 spaero-0.1.1/spaero/build/vignette.rds |binary spaero-0.1.1/spaero/inst/doc/spaero-introduction.Rmd | 48 ++++---- spaero-0.1.1/spaero/inst/doc/spaero-introduction.pdf |binary spaero-0.1.1/spaero/man/create_simulator.Rd | 2 spaero-0.1.1/spaero/man/get_stats.Rd | 36 +++--- spaero-0.1.1/spaero/tests/testthat/test-simulator.R | 22 +++ spaero-0.1.1/spaero/tests/testthat/test-stats.R | 100 +++++++++--------- spaero-0.1.1/spaero/vignettes/spaero-introduction.Rmd | 48 ++++---- 14 files changed, 200 insertions(+), 152 deletions(-)
Title: Datasets for the R/qtl Book
Description: Datasets for the book, A Guide to QTL Mapping with R/qtl.
Author: Karl W Broman <kbroman@biostat.wisc.edu>
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between qtlbook versions 0.18-3 dated 2015-09-20 and 0.18-5 dated 2016-05-22
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ data/ch3a.RData |binary data/ch3b.RData |binary data/ch3c.RData |binary data/gutlength.RData |binary data/iron.RData |binary data/myocard.RData |binary data/nf1.RData |binary data/ovar.RData |binary data/trout.RData |binary inst/CITATION | 11 +++++------ inst/STATUS.txt | 7 ++++++- 13 files changed, 27 insertions(+), 23 deletions(-)
Title: Estimating the Number of Essential Genes in a Genome
Description: Estimating the number of essential genes in a genome on the basis of data from a random transposon mutagenesis experiment, through the use of a Gibbs sampler.
Author: Karl W Broman <kbroman@biostat.wisc.edu>
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between negenes versions 1.0-3 dated 2015-09-11 and 1.0-5 dated 2016-05-22
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/negenes.R | 18 ++++++++++-------- README.md | 1 + data/Mtb80.RData |binary inst/CITATION | 19 +++++++++---------- inst/INSTALL_ME.txt | 12 ++++++------ inst/README.md | 1 + inst/STATUS.txt | 7 ++++++- man/negenes.Rd | 30 +++++++++++++++++------------- man/sim.mutants.Rd | 8 ++++---- 11 files changed, 68 insertions(+), 56 deletions(-)
Title: Multiresolution Kriging Based on Markov Random Fields
Description: Methods for the interpolation of large spatial
datasets. This package follows a "fixed rank Kriging" approach using
a large number of basis functions and provides spatial estimates
that are comparable to standard families of covariance functions.
Using a large number of basis functions allows for estimates that
can come close to interpolating the observations (a spatial model
with a small nugget variance.) Moreover, the covariance model for
this method can approximate the Matern covariance family but also
allows for a multi-resolution model and supports efficient
computation of the profile likelihood for estimating covariance
parameters. This is accomplished through compactly supported basis
functions and a Markov random field model for the basis
coefficients. These features lead to sparse matrices for the
computations and this package makes of the R spam package for this.
An extension of this version over previous ones ( < 5.4 ) is the
support for different geometries besides a rectangular domain. The
Markov random field approach combined with a basis function
representation makes the implementation of different geometries
simple where only a few specific functions need to be added with
most of the computation and evaluation done by generic routines that
have been tuned to be efficient. One benefit of the LatticeKrig
model/approach is the facility to do unconditional and conditional
simulation of the field for large numbers of arbitrary points. There
is also the flexibility for estimating non-stationary covariances
and also the case when the observations are a linear combination
(e.g. an integral) of the spatial process. Included are generic
methods for prediction, standard errors for prediction, plotting of
the estimated surface and conditional and unconditional simulation.
Author: Douglas Nychka [aut, cre], Dorit Hammerling [aut], Stephan Sain [aut], Nathan Lenssen [aut]
Maintainer: Douglas Nychka <nychka@ucar.edu>
Diff between LatticeKrig versions 5.4-1 dated 2015-11-05 and 5.5 dated 2016-05-22
LatticeKrig-5.4-1/LatticeKrig/R/BACK |only LatticeKrig-5.4-1/LatticeKrig/R/LKrigCovWieghtedObs.R |only LatticeKrig-5.4-1/LatticeKrig/man/LKDistance.Rd |only LatticeKrig-5.4-1/LatticeKrig/man/LKRing.Rd |only LatticeKrig-5.4-1/LatticeKrig/man/LKgeometry.Rd |only LatticeKrig-5.4-1/LatticeKrig/man/LKrig.fixed.Rd |only LatticeKrig-5.4-1/LatticeKrig/man/LKrig.internal.Rd |only LatticeKrig-5.4-1/LatticeKrig/man/LKrig.misc.Rd |only LatticeKrig-5.4-1/LatticeKrig/man/LKrigNormalizeBasisFast.Rd |only LatticeKrig-5.5/LatticeKrig/DESCRIPTION | 46 LatticeKrig-5.5/LatticeKrig/MD5 | 226 - LatticeKrig-5.5/LatticeKrig/NAMESPACE | 4 LatticeKrig-5.5/LatticeKrig/R/GridList.R | 4 LatticeKrig-5.5/LatticeKrig/R/LKDist.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKDistComponents.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKDistGrid.R | 4 LatticeKrig-5.5/LatticeKrig/R/LKDistGridComponents.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKGridCheck.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKGridFindNmax.R | 3 LatticeKrig-5.5/LatticeKrig/R/LKRectangleFastNormalization.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKinfoCheck.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKinfoUpdate.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.MLE.R | 13 LatticeKrig-5.5/LatticeKrig/R/LKrig.R | 49 LatticeKrig-5.5/LatticeKrig/R/LKrig.basis.R | 24 LatticeKrig-5.5/LatticeKrig/R/LKrig.coef.R | 30 LatticeKrig-5.5/LatticeKrig/R/LKrig.cov.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.cov.plot.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.lnPlike.R | 95 LatticeKrig-5.5/LatticeKrig/R/LKrig.make.par.grid.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.misc.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.precision.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.quadraticform.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.sim.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.sim.conditional.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.spind2spam.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrig.traceA.R | 6 LatticeKrig-5.5/LatticeKrig/R/LKrigCovWeightedObs.R |only LatticeKrig-5.5/LatticeKrig/R/LKrigDefaultFixedFunction.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigDistance.R | 4 LatticeKrig-5.5/LatticeKrig/R/LKrigFindLambda.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigLatticeCenters.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigLatticeScales.R |only LatticeKrig-5.5/LatticeKrig/R/LKrigMakewU.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigMakewX.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigMarginalVariance.R |only LatticeKrig-5.5/LatticeKrig/R/LKrigNormalizeBasis.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigSAR.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigSetup.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigSetupAlpha.R | 11 LatticeKrig-5.5/LatticeKrig/R/LKrigSetupAwght.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigSetupLattice.R | 2 LatticeKrig-5.5/LatticeKrig/R/LKrigUnrollGrid.R | 2 LatticeKrig-5.5/LatticeKrig/R/LatticeKrig.R | 2 LatticeKrig-5.5/LatticeKrig/R/LatticeKrigEasyDefaults.R | 2 LatticeKrig-5.5/LatticeKrig/R/ModelBox.R | 6 LatticeKrig-5.5/LatticeKrig/R/ModelCylinder.R | 4 LatticeKrig-5.5/LatticeKrig/R/ModelInterval.R | 28 LatticeKrig-5.5/LatticeKrig/R/ModelRectangle.R | 56 LatticeKrig-5.5/LatticeKrig/R/ModelRing.R | 4 LatticeKrig-5.5/LatticeKrig/R/Radial.basis.R | 2 LatticeKrig-5.5/LatticeKrig/R/Tensor.basis.R | 2 LatticeKrig-5.5/LatticeKrig/R/WendlandFunction.R | 5 LatticeKrig-5.5/LatticeKrig/R/convertIndexPeriodic.R | 2 LatticeKrig-5.5/LatticeKrig/R/createLKrigObject.R | 5 LatticeKrig-5.5/LatticeKrig/R/directionCosines.R | 4 LatticeKrig-5.5/LatticeKrig/R/predict.LKrig.R | 2 LatticeKrig-5.5/LatticeKrig/R/predictLKrigFixedFunction.R | 2 LatticeKrig-5.5/LatticeKrig/R/predictSE.LKrig.R | 6 LatticeKrig-5.5/LatticeKrig/R/predictSurface.LKrig.R | 2 LatticeKrig-5.5/LatticeKrig/R/print.LKinfo.R | 2 LatticeKrig-5.5/LatticeKrig/R/print.LKrig.R | 2 LatticeKrig-5.5/LatticeKrig/R/print.LatticeKrig.R | 2 LatticeKrig-5.5/LatticeKrig/R/setDefaultsLKinfo.R | 2 LatticeKrig-5.5/LatticeKrig/R/surface.LKrig.R | 2 LatticeKrig-5.5/LatticeKrig/R/triWeight.R | 2 LatticeKrig-5.5/LatticeKrig/R/zzz.R | 2 LatticeKrig-5.5/LatticeKrig/inst |only LatticeKrig-5.5/LatticeKrig/man/LKDist.Rd |only LatticeKrig-5.5/LatticeKrig/man/LKGeometry.Rd |only LatticeKrig-5.5/LatticeKrig/man/LKinfoCheck.Rd | 19 LatticeKrig-5.5/LatticeKrig/man/LKrig.MLE.Rd | 34 LatticeKrig-5.5/LatticeKrig/man/LKrig.Rd | 77 LatticeKrig-5.5/LatticeKrig/man/LKrig.basis.Rd | 51 LatticeKrig-5.5/LatticeKrig/man/LKrig.sim.Rd | 23 LatticeKrig-5.5/LatticeKrig/man/LKrigDefaultFixedFunction.Rd |only LatticeKrig-5.5/LatticeKrig/man/LKrigDistance-methods.Rd | 17 LatticeKrig-5.5/LatticeKrig/man/LKrigInternal.Rd |only LatticeKrig-5.5/LatticeKrig/man/LKrigLatticeCenters.Rd | 49 LatticeKrig-5.5/LatticeKrig/man/LKrigMiscellaneous.Rd |only LatticeKrig-5.5/LatticeKrig/man/LKrigNormalizeBasis.Rd |only LatticeKrig-5.5/LatticeKrig/man/LKrigSAR.Rd | 21 LatticeKrig-5.5/LatticeKrig/man/LKrigSetup.Rd | 46 LatticeKrig-5.5/LatticeKrig/man/LKrigSetupAlpha.Rd | 19 LatticeKrig-5.5/LatticeKrig/man/LKrigSetupAwght.Rd | 21 LatticeKrig-5.5/LatticeKrig/man/LKrigSetupLattice.Rd | 43 LatticeKrig-5.5/LatticeKrig/man/LatticeKrig.Rd | 65 LatticeKrig-5.5/LatticeKrig/man/PeriodicGeometry.Rd |only LatticeKrig-5.5/LatticeKrig/man/Radial.Basis.Rd | 5 LatticeKrig-5.5/LatticeKrig/man/gridList-class.Rd | 137 LatticeKrig-5.5/LatticeKrig/man/setDefaultsLKinfo.Rd | 29 LatticeKrig-5.5/LatticeKrig/src/LKdist.f | 16 LatticeKrig-5.5/LatticeKrig/src/LKdistgrid.f | 16 LatticeKrig-5.5/LatticeKrig/src/dfind1d.f | 16 LatticeKrig-5.5/LatticeKrig/src/dfind2d.f | 17 LatticeKrig-5.5/LatticeKrig/src/findNorm.f | 19 LatticeKrig-5.5/LatticeKrig/src/multBasis.f | 19 LatticeKrig-5.5/LatticeKrig/tests/LKrig.FindNorm.test.Rout.save | 43 LatticeKrig-5.5/LatticeKrig/tests/LKrig.LKCylinder.test.Rout.save |only LatticeKrig-5.5/LatticeKrig/tests/LKrig.LKCylinder.test.inverse.Rout.save |only LatticeKrig-5.5/LatticeKrig/tests/LKrig.basis.test.R | 19 LatticeKrig-5.5/LatticeKrig/tests/LKrig.basis.test.Rout.save | 63 LatticeKrig-5.5/LatticeKrig/tests/LKrig.lnPLike.test.R | 46 LatticeKrig-5.5/LatticeKrig/tests/LKrig.lnPlike.test.Rout.save | 51 LatticeKrig-5.5/LatticeKrig/tests/LKrig.nullspace.test.Rout.save | 19 LatticeKrig-5.5/LatticeKrig/tests/LKrig.precision.test.Rout.save | 67 LatticeKrig-5.5/LatticeKrig/tests/LKrig.se.test.Rout.save | 43 LatticeKrig-5.5/LatticeKrig/tests/LKrig.test.3D.Rout.save | 1450 +++++++++- LatticeKrig-5.5/LatticeKrig/tests/LKrig.test.R | 29 LatticeKrig-5.5/LatticeKrig/tests/LKrig.test.Rout.save | 135 LatticeKrig-5.5/LatticeKrig/tests/LKrig.test.inverse.Rout.save |only LatticeKrig-5.5/LatticeKrig/tests/LKrigMarginalVariance.test.R |only LatticeKrig-5.5/LatticeKrig/tests/LKrigMarginalVariance.test.Rout.save |only 123 files changed, 2700 insertions(+), 745 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Provides new statistics to locate and tag peaks and valleys in 2D
plots, a statistics to add a label with the equation of a polynomial fitted
with lm(), or R^2 or adjusted R^2 or information criteria for any model
fitted with function lm(). Provides a function for flexibly converting time
series to data frames suitable for plotting with ggplot(). In addition
provides two statistics and two geometry useful for diagnosing what data are
passed to compute_group() and compute_panel() functions and to geometries.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.2.7 dated 2016-03-22 and 0.2.8 dated 2016-05-22
DESCRIPTION | 16 +- MD5 | 33 ++-- NAMESPACE | 8 + NEWS | 33 +++- R/stat-fit-broom.R |only R/stat-fit-deviations.R |only R/stat-fit-residuals.R |only R/stat-peaks.R | 3 R/stat-poly-eq.R | 127 +++++++++++++--- build/vignette.rds |binary inst/doc/examples.R | 170 +++++++++++++++++++--- inst/doc/examples.Rmd | 226 ++++++++++++++++++++++++++--- inst/doc/examples.html | 346 +++++++++++++++++++++++++++++++++------------ man/ggpmisc-ggproto.Rd | 9 + man/stat_fit_augment.Rd |only man/stat_fit_deviations.Rd |only man/stat_fit_glance.Rd |only man/stat_fit_residuals.Rd |only man/stat_peaks.Rd | 3 man/stat_poly_eq.Rd | 17 +- vignettes/examples.Rmd | 226 ++++++++++++++++++++++++++--- 21 files changed, 1011 insertions(+), 206 deletions(-)
Title: Computes Numeric Fourier Integrals
Description: Computes Fourier integrals of functions of one and two variables using the Fast Fourier transform. The Fourier transforms must be evaluated on a regular grid.
Author: Guillermo Basulto-Elias
Maintainer: Guillermo Basulto-Elias <guillermobasulto@gmail.com>
Diff between fourierin versions 0.1.1 dated 2016-05-19 and 0.1.2 dated 2016-05-22
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md |only R/fourierin.R | 37 ------------------------------------- man/fourierin.Rd | 37 ------------------------------------- vignettes/fourierin_details.Rmd | 11 +++++++---- 6 files changed, 15 insertions(+), 85 deletions(-)
Title: Bayesian Cost Effectiveness Analysis
Description: Produces an economic evaluation of a Bayesian model in the form of MCMC simulations. Given suitable variables of cost and effectiveness / utility for two or more interventions, This package computes the most cost-effective alternative and produces graphical summaries and probabilistic sensitivity analysis.
Author: Gianluca Baio, Andrea Berardi, Anna Heath
Maintainer: Gianluca Baio <gianluca@stats.ucl.ac.uk>
Diff between BCEA versions 2.2-2 dated 2016-01-25 and 2.2-3 dated 2016-05-22
DESCRIPTION | 12 MD5 | 12 R/bcea.R | 1272 ++++++++++++++++++++-------------------------------- data/Smoking.RData |binary data/Vaccine.RData |binary man/BCEA-package.Rd | 4 man/evppi.Rd | 331 ++++++------- 7 files changed, 689 insertions(+), 942 deletions(-)