Title: Solving Mixed Model Equations in R
Description: Mixed model equation solver allowing the specification of variance covariance structures of random effects. ML/REML estimates are obtained using the Average Information, Expectation-Maximization, Newton-Raphson, or Efficient Mixed Model Association algorithms. Designed for genomic prediction and genome wide association studies (GWAS) to include additive, dominance and epistatic relationship structures or other covariance structures in R, but also functional as a regular mixed model program.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <covarrubiasp@wisc.edu>
Diff between sommer versions 1.6 dated 2016-05-19 and 1.7 dated 2016-05-23
CHANGELOG | 16 DESCRIPTION | 10 MD5 | 52 - NAMESPACE | 8 R/AI.R | 960 ++++++++++++++++-------------- R/AI2.R | 452 +++++++------- R/AI3.R | 456 +++++++------- R/EM.R | 633 +++++++++----------- R/EM2.R | 366 +++++------ R/NR.R | 1573 +++++++++++++++++++++++++++----------------------- R/NR22.R |only R/R.mat.R |only R/fdr.R | 32 - R/mmer.R | 235 +++++-- R/mmer2.R | 4 R/score.calc.R | 14 data/PolyData.RData |binary inst/doc/sommer.R | 2 inst/doc/sommer.Rmd | 2 inst/doc/sommer.pdf |binary man/NR.Rd | 36 + man/NR22.Rd |only man/PolyData.Rd | 13 man/R.mat.Rd |only man/fdr.Rd | 2 man/mmer.Rd | 4 man/mmer2.Rd | 5 vignettes/sommer.Rmd | 2 vignettes/sommer.html | 49 - 29 files changed, 2655 insertions(+), 2271 deletions(-)
Title: Model-Based Clustering via Mixtures of Unrestricted Skew-t
Sactor Analyzer Models
Description: Implements mixtures of unrestricted skew-t factor analyzer models via the EM algorithm.
Author: Paula M. Murray, Ryan P. Browne, and Paul D. McNicholas
Maintainer: Paula M. Murray <paula.murray@math.mcmaster.ca>
Diff between uskewFactors versions 1.0 dated 2014-09-18 and 2.0 dated 2016-05-23
DESCRIPTION | 18 ++++++------- MD5 | 10 +++---- NAMESPACE | 1 R/uSkewFactors.R | 57 ++++++++++++++++++++++---------------------- man/uskewFA.Rd | 19 ++++++-------- man/uskewFactors-package.Rd | 6 ++-- 6 files changed, 56 insertions(+), 55 deletions(-)
Title: Multiple Factor Analysis (MFA)
Description: Performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@dex.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MFAg versions 1.3 dated 2015-10-06 and 1.4 dated 2016-05-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Plot.MFA.R | 2 +- man/MFAg-package.Rd | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Thermoluminescence Glow Curve Deconvolution
Description: Deconvolving thermoluminescence glow curves according to the general-order
empirical expression or the semi-analytical expression derived from the one trap-
one recombination (OTOR) model based on the Lambert's W function using a modified
Levenberg-Marquardt algorithm. It provides the possibility of setting constraints
or fixing any of parameters. It offers an interactive way to initialize parameters
by clicking with a mouse on a plot at positions where peak maxima should be located.
The optimal estimate is obtained by "trial-and-error". It also provides routines
for simulating first-order, second-order, and general-order glow peaks (curves).
Author: Jun Peng [aut, cre],
Jorge More [ctb],
Burton Garbow [ctb],
Kenneth Hillstrom [ctb],
John Burkardt [ctb],
Linda R. Petzold [ctb],
Alan C. Hindmarsh [ctb],
R. Woodrow Setzer [ctb],
Andrew Horchler [ctb]
Maintainer: Jun Peng <pengjun10@mails.ucas.ac.cn>
Diff between tgcd versions 1.8 dated 2016-01-19 and 1.9 dated 2016-05-23
DESCRIPTION | 52 +++++--- MD5 | 17 +- R/simPeak.R | 44 ++++--- R/simqOTOR.R | 50 ++++---- R/tgcd.R | 297 +++++++++++++++++++++++++++++++----------------- man/tgcd.Rd | 124 ++++++++++++-------- src/calcD.f90 |only src/calcei.f90 |only src/tgcd.f90 | 318 ++++++++++++++++++++++++++++++++++++---------------- src/tgcd1.f90 | 223 ++++++++++++++++++++++++------------ src/wrightOmega.f90 |only 11 files changed, 739 insertions(+), 386 deletions(-)
Title: Confidence Regions for Optima
Description: Computes confidence regions on the location of
response surface optima.
Author: Enrique del Castillo, John Hunt, and James Rapkin
Maintainer: Enrique del Castillo <exd13@psu.edu>
Diff between OptimaRegion versions 0.1.0 dated 2016-03-11 and 0.2 dated 2016-05-23
OptimaRegion-0.1.0/OptimaRegion/data/Drug.txt |only OptimaRegion-0.2/OptimaRegion/DESCRIPTION | 10 ++-- OptimaRegion-0.2/OptimaRegion/MD5 | 18 ++++--- OptimaRegion-0.2/OptimaRegion/NAMESPACE | 2 OptimaRegion-0.2/OptimaRegion/R/CRcompare.R |only OptimaRegion-0.2/OptimaRegion/R/OptRegionQuad.R | 3 - OptimaRegion-0.2/OptimaRegion/data/Drug.txt.gz |only OptimaRegion-0.2/OptimaRegion/inst/doc/OptimaRegion-manual.pdf |binary OptimaRegion-0.2/OptimaRegion/inst/doc/OptimaRegionVignette.pdf |only OptimaRegion-0.2/OptimaRegion/man/CRcompare.Rd |only OptimaRegion-0.2/OptimaRegion/man/OptRegionQuad.Rd | 24 +++++----- OptimaRegion-0.2/OptimaRegion/man/OptRegionTps.Rd | 19 +++---- OptimaRegion-0.2/OptimaRegion/man/OptimaRegion-package.Rd |only 13 files changed, 42 insertions(+), 34 deletions(-)
Title: Planing, Monitoring and Evaluating Oncological Phase 2 Studies
Description: Purpose of this package is it to plan, monitor and evaluate
oncological phase II studies. In general this kind of studies are single-arm
trials with planned interim analysis and binary endpoint. To meet the resulting
requirements, the package provides functions to calculate and evaluate 'Simon's
two-stage designs' and 'so-called' 'subset designs'. If you are unfamiliar with
this package a good starting point is to take a closer look at the functions
getSolutions() and getSolutionsSub1().The web-based tool (https://imbi.shinyapps.io/phaseII-app/)
extends the functionality of our R package by means of a proper dealing with over- and underrunning.
The R function binom.test of the 'stats' R package and the package 'binom' might be
helpful to assess the performance of the corresponding one-stage design as a reference.
Author: Marius Wirths
Maintainer: Marius Wirths <wirths@imbi.uni-heidelberg.de>
Diff between OneArmPhaseTwoStudy versions 0.1.4 dated 2015-11-26 and 0.1.6 dated 2016-05-23
DESCRIPTION | 22 ++++++--- MD5 | 74 +++++++++++++++---------------- R/zzz.R | 40 +++++++++++++++- man/getCE.Rd | 3 - man/getCP.Rd | 9 ++- man/getCP_simon.Rd | 3 - man/getD_distributeToOne.Rd | 5 +- man/getD_equally.Rd | 7 +- man/getD_none.Rd | 5 +- man/getD_proportionally.Rd | 9 ++- man/getN2.Rd | 3 - man/getP.Rd | 3 - man/getSolutions.Rd | 11 ++-- man/getSolutionsSub1.Rd | 7 +- man/get_CI.Rd | 3 - man/get_UMVUE_GMS.Rd | 3 - man/get_UMVUE_GMS_subset_second_only.Rd | 5 +- man/get_UMVUE_GMS_subset_second_total.Rd | 3 - man/get_conditionalPower.Rd | 5 +- man/get_confidence_set.Rd | 5 +- man/get_p_KC.Rd | 3 - man/get_p_exact_subset.Rd | 3 - man/get_r2_flex.Rd | 5 +- man/plot_confidence_set.Rd | 3 - man/plot_simon_study_state.Rd | 5 +- man/plot_sub1_study_state.Rd | 5 +- man/setSimonParams.Rd | 3 - man/setSub1Params.Rd | 3 - man/setupSimon.Rd | 3 - man/setupSub1Design.Rd | 3 - man/toDataframe.Rd | 5 +- src/Makevars.win | 4 - src/design.cpp | 2 src/design.h | 2 src/simonModule.h | 1 src/sub1.cpp | 2 src/sub1.h | 2 src/sub1Module.h | 3 - 38 files changed, 181 insertions(+), 101 deletions(-)
More information about OneArmPhaseTwoStudy at CRAN
Permanent link
Title: File-Backed Matrix Class with Convenient Read and Write Access
Description: Interface for working with large matrices stored in files,
not in computer memory. Supports multiple non-character
data types (double, integer, logical and raw) of
various sizes (e.g. 8 and 4 byte real values).
Access to parts of the matrix is done by indexing,
exactly as with usual R matrices.
Supports very large matrices.
Tested on multi-terabyte matrices.
Allows for more than 2^32 rows or columns.
Allows for quick addition of extra columns to a filematrix.
Cross-platform as the package has R code only.
Author: Andrey A Shabalin
Maintainer: Andrey A Shabalin <ashabalin@vcu.edu>
Diff between filematrix versions 1.0 dated 2015-06-12 and 1.1.0 dated 2016-05-23
filematrix-1.0/filematrix/R/filematrix.r |only filematrix-1.1.0/filematrix/DESCRIPTION | 34 ++++-- filematrix-1.1.0/filematrix/MD5 | 27 ++++- filematrix-1.1.0/filematrix/NAMESPACE | 9 - filematrix-1.1.0/filematrix/R/filematrix.R |only filematrix-1.1.0/filematrix/build |only filematrix-1.1.0/filematrix/inst |only filematrix-1.1.0/filematrix/man/filematrix-class.Rd | 91 ++++++++---------- filematrix-1.1.0/filematrix/man/filematrix-package.Rd | 31 +++--- filematrix-1.1.0/filematrix/man/fm.create.Rd | 82 +++++++--------- filematrix-1.1.0/filematrix/tests |only filematrix-1.1.0/filematrix/vignettes |only 12 files changed, 149 insertions(+), 125 deletions(-)
Title: Simulations for Adaptive Seamless Designs
Description: Package runs simulations for adaptive seamless designs with and without early outcomes
for treatment selection and subpopulation type designs.
Author: Nick Parsons
Maintainer: Nick Parsons <nick.parsons@warwick.ac.uk>
Diff between asd versions 2.0 dated 2013-11-26 and 2.2 dated 2016-05-23
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 21 ++++++++++++++------- man/asd-package.Rd | 4 ++-- man/gsubpop.sim.Rd | 2 +- man/gtreatsel.sim.Rd | 2 +- 6 files changed, 28 insertions(+), 21 deletions(-)
Title: Topic Models
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
Author: Bettina Grün [aut, cre],
Kurt Hornik [aut]
Maintainer: Bettina Grün <Bettina.Gruen@jku.at>
Diff between topicmodels versions 0.2-3 dated 2016-02-17 and 0.2-4 dated 2016-05-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary data/AssociatedPress.rda |binary inst/NEWS.Rd | 7 +++++++ inst/doc/topicmodels.pdf |binary src/rGibbslda.cpp | 37 +++++++++++++++++++------------------ 7 files changed, 35 insertions(+), 27 deletions(-)
Title: Plant Architectural Analysis with Yplant and QuasiMC
Description: An R implementation of Yplant, combined with the QuasiMC
raytracer. Calculate radiation absorption, transmission and scattering,
photosynthesis and transpiration of virtual 3D plants.
Author: Remko Duursma. QuasiMC by Mik Cieslak. Uses code by Robert Pearcy
(Yplant) and Belinda Medlyn (MAESTRA)
Maintainer: Remko Duursma <remkoduursma@gmail.com>
Diff between YplantQMC versions 0.6-4 dated 2014-12-03 and 0.6-6 dated 2016-05-23
YplantQMC-0.6-4/YplantQMC/README.md |only YplantQMC-0.6-6/YplantQMC/DESCRIPTION | 13 YplantQMC-0.6-6/YplantQMC/MD5 | 273 ++-- YplantQMC-0.6-6/YplantQMC/NAMESPACE | 38 YplantQMC-0.6-6/YplantQMC/R/DAPA.R | 6 YplantQMC-0.6-6/YplantQMC/R/DAPA.plant3d.R | 90 - YplantQMC-0.6-6/YplantQMC/R/DAPAQMC.R | 50 YplantQMC-0.6-6/YplantQMC/R/Farquhar.R | 362 +++--- YplantQMC-0.6-6/YplantQMC/R/GramSchmidt.R | 60 - YplantQMC-0.6-6/YplantQMC/R/KE.R | 72 - YplantQMC-0.6-6/YplantQMC/R/Kn.R | 96 - YplantQMC-0.6-6/YplantQMC/R/STARbar.R | 665 +++++------ YplantQMC-0.6-6/YplantQMC/R/Silhouette.R | 86 - YplantQMC-0.6-6/YplantQMC/R/VPDTdiurnal.R | 76 - YplantQMC-0.6-6/YplantQMC/R/VPDtoRH.R | 12 YplantQMC-0.6-6/YplantQMC/R/YplantDay.R | 597 ++++----- YplantQMC-0.6-6/YplantQMC/R/acosangle.R | 26 YplantQMC-0.6-6/YplantQMC/R/areapoly.R | 6 YplantQMC-0.6-6/YplantQMC/R/as.data.frame.STARbarlist.R | 20 YplantQMC-0.6-6/YplantQMC/R/calcparhrly.R | 104 - YplantQMC-0.6-6/YplantQMC/R/checkHemi.R | 20 YplantQMC-0.6-6/YplantQMC/R/checkInstallation.R | 28 YplantQMC-0.6-6/YplantQMC/R/constructplant.R | 958 ++++++++-------- YplantQMC-0.6-6/YplantQMC/R/crownhull.R | 150 +- YplantQMC-0.6-6/YplantQMC/R/esat.R | 20 YplantQMC-0.6-6/YplantQMC/R/evalHemi.R | 88 - YplantQMC-0.6-6/YplantQMC/R/getR.R | 150 +- YplantQMC-0.6-6/YplantQMC/R/getangles.R | 136 +- YplantQMC-0.6-6/YplantQMC/R/getleafnormal.R | 18 YplantQMC-0.6-6/YplantQMC/R/getpsil.R | 440 +++---- YplantQMC-0.6-6/YplantQMC/R/gridtrace.R | 284 ++-- YplantQMC-0.6-6/YplantQMC/R/includePhy.R | 116 - YplantQMC-0.6-6/YplantQMC/R/installQuasiMC.R | 10 YplantQMC-0.6-6/YplantQMC/R/leafdata.R | 82 - YplantQMC-0.6-6/YplantQMC/R/leafdispersion.R | 174 +- YplantQMC-0.6-6/YplantQMC/R/lightresponse.R | 52 YplantQMC-0.6-6/YplantQMC/R/madeleafdirection.R | 82 - YplantQMC-0.6-6/YplantQMC/R/makeQMCinput.R | 100 - YplantQMC-0.6-6/YplantQMC/R/makeStand.R | 210 +-- YplantQMC-0.6-6/YplantQMC/R/makesolarvec.R | 20 YplantQMC-0.6-6/YplantQMC/R/makevector.R | 2 YplantQMC-0.6-6/YplantQMC/R/makeviewplane.R | 22 YplantQMC-0.6-6/YplantQMC/R/pathlen.R | 262 ++-- YplantQMC-0.6-6/YplantQMC/R/photosyn.R | 276 ++-- YplantQMC-0.6-6/YplantQMC/R/plot.leaffile.R | 108 - YplantQMC-0.6-6/YplantQMC/R/plot.plant3d.R | 578 ++++----- YplantQMC-0.6-6/YplantQMC/R/plot.projectedplant3d.R | 112 - YplantQMC-0.6-6/YplantQMC/R/plot.tracedplant.R | 58 YplantQMC-0.6-6/YplantQMC/R/plot.yphemi.R | 196 +-- YplantQMC-0.6-6/YplantQMC/R/plot.yplantsim.R | 190 +-- YplantQMC-0.6-6/YplantQMC/R/plot.yplocation.R | 20 YplantQMC-0.6-6/YplantQMC/R/plot.ypmet.R | 90 - YplantQMC-0.6-6/YplantQMC/R/plot3dcylinder.R | 68 - YplantQMC-0.6-6/YplantQMC/R/plotstemsections.R | 50 YplantQMC-0.6-6/YplantQMC/R/print.STAR.R | 30 YplantQMC-0.6-6/YplantQMC/R/print.plant3d.R | 38 YplantQMC-0.6-6/YplantQMC/R/print.plant3dlist.R | 18 YplantQMC-0.6-6/YplantQMC/R/print.projectedplant3d.R | 18 YplantQMC-0.6-6/YplantQMC/R/print.stand3d.R | 20 YplantQMC-0.6-6/YplantQMC/R/print.summary.plant3d.R | 70 - YplantQMC-0.6-6/YplantQMC/R/print.yplantsim.R | 46 YplantQMC-0.6-6/YplantQMC/R/print.yplantsimlist.R | 22 YplantQMC-0.6-6/YplantQMC/R/print.yplocation.R | 28 YplantQMC-0.6-6/YplantQMC/R/print.ypmet.R | 50 YplantQMC-0.6-6/YplantQMC/R/print.ypphy.R | 24 YplantQMC-0.6-6/YplantQMC/R/projectplant.R | 212 +-- YplantQMC-0.6-6/YplantQMC/R/psrdata.R | 34 YplantQMC-0.6-6/YplantQMC/R/randomplant.R | 318 ++--- YplantQMC-0.6-6/YplantQMC/R/readCAN.R | 74 - YplantQMC-0.6-6/YplantQMC/R/readQMCout.R | 54 YplantQMC-0.6-6/YplantQMC/R/readl.R | 224 +-- YplantQMC-0.6-6/YplantQMC/R/readp.R | 134 +- YplantQMC-0.6-6/YplantQMC/R/replaceangles.R | 438 +++---- YplantQMC-0.6-6/YplantQMC/R/runQMCUOC.R | 82 - YplantQMC-0.6-6/YplantQMC/R/runYplant.R | 647 +++++----- YplantQMC-0.6-6/YplantQMC/R/runquasimc.R | 64 - YplantQMC-0.6-6/YplantQMC/R/setHemi.R | 202 +-- YplantQMC-0.6-6/YplantQMC/R/setLocation.R | 148 +- YplantQMC-0.6-6/YplantQMC/R/setMet.R | 534 ++++---- YplantQMC-0.6-6/YplantQMC/R/setPhy.R | 146 +- YplantQMC-0.6-6/YplantQMC/R/shiftplant.R | 138 +- YplantQMC-0.6-6/YplantQMC/R/summary.plant3d.R | 464 +++---- YplantQMC-0.6-6/YplantQMC/R/summary.plant3dlist.R | 158 +- YplantQMC-0.6-6/YplantQMC/R/summary.yplantsimlist.R | 186 +-- YplantQMC-0.6-6/YplantQMC/R/viewplot.R | 172 +- YplantQMC-0.6-6/YplantQMC/R/writeOUTfile.R | 26 YplantQMC-0.6-6/YplantQMC/R/writePSRfile.R | 120 +- YplantQMC-0.6-6/YplantQMC/R/writecfg.R | 172 +- YplantQMC-0.6-6/YplantQMC/R/writerandomdiffuse.R | 24 YplantQMC-0.6-6/YplantQMC/R/writeturtlediffuse.R | 46 YplantQMC-0.6-6/YplantQMC/R/xmastime.R | 80 - YplantQMC-0.6-6/YplantQMC/R/xprod.R | 12 YplantQMC-0.6-6/YplantQMC/R/yplantqmc-package.R | 276 ++-- YplantQMC-0.6-6/YplantQMC/R/ypreport.R | 354 ++--- YplantQMC-0.6-6/YplantQMC/R/zenaz.R | 488 ++++---- YplantQMC-0.6-6/YplantQMC/R/zzz.R | 66 - YplantQMC-0.6-6/YplantQMC/data/hemiphotos.RData |binary YplantQMC-0.6-6/YplantQMC/data/plantexamples.RData |binary YplantQMC-0.6-6/YplantQMC/data/turtle.RData |binary YplantQMC-0.6-6/YplantQMC/data/turtle244.RData |binary YplantQMC-0.6-6/YplantQMC/data/turtle482.RData |binary YplantQMC-0.6-6/YplantQMC/data/yplantaltaz.RData |binary YplantQMC-0.6-6/YplantQMC/man/Farquhar.Rd | 7 YplantQMC-0.6-6/YplantQMC/man/ModifyPfiles.Rd | 17 YplantQMC-0.6-6/YplantQMC/man/STARbar.Rd | 26 YplantQMC-0.6-6/YplantQMC/man/Silhouette.Rd | 8 YplantQMC-0.6-6/YplantQMC/man/YplantDay.Rd | 50 YplantQMC-0.6-6/YplantQMC/man/constructplant.Rd | 13 YplantQMC-0.6-6/YplantQMC/man/crownhull.Rd | 6 YplantQMC-0.6-6/YplantQMC/man/examplehemi.Rd | 6 YplantQMC-0.6-6/YplantQMC/man/getR.Rd | 3 YplantQMC-0.6-6/YplantQMC/man/getangles.Rd | 9 YplantQMC-0.6-6/YplantQMC/man/installQuasiMC.Rd | 11 YplantQMC-0.6-6/YplantQMC/man/leafdispersion.Rd | 8 YplantQMC-0.6-6/YplantQMC/man/lightresponse.Rd | 3 YplantQMC-0.6-6/YplantQMC/man/makeStand.Rd | 6 YplantQMC-0.6-6/YplantQMC/man/plantexamples.Rd | 7 YplantQMC-0.6-6/YplantQMC/man/plot.leaffile.Rd | 6 YplantQMC-0.6-6/YplantQMC/man/plot.plant3d.Rd | 9 YplantQMC-0.6-6/YplantQMC/man/projectplant.Rd | 14 YplantQMC-0.6-6/YplantQMC/man/psrdata.Rd | 3 YplantQMC-0.6-6/YplantQMC/man/randomplant.Rd | 17 YplantQMC-0.6-6/YplantQMC/man/readl.Rd | 3 YplantQMC-0.6-6/YplantQMC/man/readp.Rd | 3 YplantQMC-0.6-6/YplantQMC/man/runYplant.Rd | 13 YplantQMC-0.6-6/YplantQMC/man/setHemi.Rd | 5 YplantQMC-0.6-6/YplantQMC/man/setLocation.Rd | 8 YplantQMC-0.6-6/YplantQMC/man/setMet.Rd | 15 YplantQMC-0.6-6/YplantQMC/man/setPhy.Rd | 21 YplantQMC-0.6-6/YplantQMC/man/summary.plant3d.Rd | 56 YplantQMC-0.6-6/YplantQMC/man/turtle.Rd | 5 YplantQMC-0.6-6/YplantQMC/man/turtle244.Rd | 7 YplantQMC-0.6-6/YplantQMC/man/turtle482.Rd | 7 YplantQMC-0.6-6/YplantQMC/man/viewplot.Rd | 8 YplantQMC-0.6-6/YplantQMC/man/xmastime.Rd | 3 YplantQMC-0.6-6/YplantQMC/man/yplantaltaz.Rd | 5 YplantQMC-0.6-6/YplantQMC/man/ypreport.Rd | 3 YplantQMC-0.6-6/YplantQMC/man/zenaz.Rd | 6 138 files changed, 7399 insertions(+), 7277 deletions(-)
Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition
Examination Survey (NHANES).
Author: Christopher Endres
Maintainer: Christopher Endres <cjendres1@gmail.com>
Diff between nhanesA versions 0.6.3.1 dated 2016-03-28 and 0.6.4 dated 2016-05-23
DESCRIPTION | 8 MD5 | 30 +-- NAMESPACE | 4 R/nhanes.R | 353 +++++++++++++++++++++++++++++--------- build/vignette.rds |binary inst/doc/Introducing_nhanesA.R | 13 + inst/doc/Introducing_nhanesA.Rmd | 24 ++ inst/doc/Introducing_nhanesA.html | 64 +++++- man/browseNHANES.Rd | 7 man/nhanesDXA.Rd | 2 man/nhanesSearch.Rd | 15 - man/nhanesSearchTableNames.Rd |only man/nhanesSearchVarName.Rd |only man/nhanesTableVars.Rd | 6 man/nhanesTables.Rd | 6 man/nhanesTranslate.Rd | 10 - vignettes/Introducing_nhanesA.Rmd | 24 ++ 17 files changed, 427 insertions(+), 139 deletions(-)
Title: Discovering Multiple, Statistically-Equivalent Signatures
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.
Author: Ioannis Tsamardinos, Vincenzo Lagani, Giorgos Athineou, Michail Tsagris, Giorgos Borboudakis, Anna Roumpelaki
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 0.8.5 dated 2016-04-26 and 0.8.7 dated 2016-05-23
DESCRIPTION | 11 +- MD5 | 62 ++++++++-------- NAMESPACE | 9 +- R/SES.R | 1 R/bic.fsreg.R | 4 - R/bic.glm.fsreg.R | 188 +++++++++++++++++++++++++------------------------ R/dag2eg.R | 8 +- R/fs.reg.R | 5 - R/glm.bsreg.R |only R/glm.fsreg.R | 179 +++++++++++++++++++++++----------------------- R/lm.fsreg.R | 2 R/model.R | 50 ++++++------- R/pc.con.R | 5 + R/pc.or.R | 35 +++++---- R/rdag.R | 8 +- R/reg.fit.R | 16 ++-- R/ridge.plot.R | 6 - R/ridgereg.cv.R | 8 +- R/testIndLogistic.R | 16 ++-- R/testIndPois.R | 16 ++-- man/MXM-internal.Rd | 4 - man/MXM-package.Rd | 4 - man/bic.fsreg.Rd | 9 +- man/bic.glm.fsreg.Rd | 14 +-- man/fs.reg.Rd | 12 +-- man/glm.bsreg.Rd |only man/glm.fsreg.Rd | 18 ++-- man/lm.fsreg.Rd | 4 - man/pc.or.Rd | 7 + man/testIndFisher.Rd | 2 man/testIndLogistic.Rd | 2 man/testIndPois.Rd | 2 man/testIndReg.Rd | 2 33 files changed, 366 insertions(+), 343 deletions(-)
Title: Regularization Paths for Lasso or Elastic-Net Penalized Huber
Loss Regression and Quantile Regression
Description: Efficient algorithms for fitting regularization paths for lasso or elastic-net penalized regression models with Huber loss, quantile loss or squared loss.
Author: Congrui Yi
Maintainer: Congrui Yi <congrui-yi@uiowa.edu>
Diff between hqreg versions 1.2 dated 2016-02-16 and 1.3 dated 2016-05-23
hqreg-1.2/hqreg/R/init.R |only hqreg-1.2/hqreg/R/loss.hqreg.R |only hqreg-1.3/hqreg/DESCRIPTION | 18 hqreg-1.3/hqreg/MD5 | 34 hqreg-1.3/hqreg/NAMESPACE | 3 hqreg-1.3/hqreg/NEWS | 8 hqreg-1.3/hqreg/R/cv.hqreg.R | 63 + hqreg-1.3/hqreg/R/hqreg.R | 55 - hqreg-1.3/hqreg/R/measure.hqreg.R |only hqreg-1.3/hqreg/R/plot.cv.hqreg.R | 6 hqreg-1.3/hqreg/R/plot.hqreg.R | 7 hqreg-1.3/hqreg/R/predict.cv.hqreg.R | 5 hqreg-1.3/hqreg/man/cv.hqreg.Rd | 28 hqreg-1.3/hqreg/man/hqreg-package.Rd | 20 hqreg-1.3/hqreg/man/hqreg.Rd | 14 hqreg-1.3/hqreg/man/plot.cv.hqreg.Rd | 6 hqreg-1.3/hqreg/man/plot.hqreg.Rd | 9 hqreg-1.3/hqreg/src/data_process.c |only hqreg-1.3/hqreg/src/hqreg.c | 1487 +++++++++++++++-------------------- hqreg-1.3/hqreg/src/init.c |only hqreg-1.3/hqreg/src/util.c |only 21 files changed, 824 insertions(+), 939 deletions(-)