Title: Supplementary Item Response Theory Models
Description:
Supplementary item response theory models to complement existing
functions in R, including multidimensional compensatory and
noncompensatory IRT models, MCMC for hierarchical IRT models and
testlet models, NOHARM, Rasch copula model, faceted and
hierarchical rater models, ordinal IRT model (ISOP),
DETECT statistic, local structural equation modeling (LSEM).
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between sirt versions 1.10-0 dated 2016-01-29 and 1.11-0 dated 2016-05-30
DESCRIPTION | 20 - MD5 | 252 ++++++++++------- NAMESPACE | 51 +++ R/IRT.expectedCounts_sirt.R |only R/IRT.factor.scores.xxirt.R |only R/IRT.irfprob.sirt.R | 12 R/IRT.likelihood_sirt.R | 9 R/IRT.modelfit.sirt.R | 19 + R/IRT.posterior_sirt.R | 11 R/amh.R |only R/amh_ic.R |only R/amh_loglike.R |only R/amh_proposal_refresh.R |only R/amh_sampling.R |only R/anova_sirt.R | 4 R/coef.amh.R |only R/confint.amh.R |only R/confint.xxirt.R |only R/invgamma2.R |only R/logLik.amh.R |only R/logLik_sirt.R | 3 R/mcmc_WaldTest.R |only R/mcmc_coef.R |only R/mcmc_confint.R |only R/mcmc_derivedPars.R |only R/mcmc_plot.R |only R/mcmc_summary.R |only R/mcmc_vcov.R |only R/mirt.wrapper.coef.R | 167 +++++------ R/osink.R | 4 R/plot.amh.R |only R/plot.mcmc.sirt.R | 4 R/print.xxirt.R |only R/summary.amh.R |only R/summary.smirt.R | 2 R/summary.xxirt.R |only R/vcov.amh.R |only R/xxirt.R |only R/xxirt_EAP.R |only R/xxirt_IRT.se.R |only R/xxirt_ThetaDistribution_extract_freeParameters.R |only R/xxirt_coef.R |only R/xxirt_compute_itemprobs.R |only R/xxirt_compute_likelihood.R |only R/xxirt_compute_posterior.R |only R/xxirt_compute_priorDistribution.R |only R/xxirt_createDiscItem.R |only R/xxirt_createItemList.R |only R/xxirt_createParTable.R |only R/xxirt_createThetaDistribution.R |only R/xxirt_data_proc.R |only R/xxirt_hessian.R |only R/xxirt_ic.R |only R/xxirt_modifyParTable.R |only R/xxirt_mstep_ThetaParameters.R |only R/xxirt_mstep_itemParameters.R |only R/xxirt_mstep_itemParameters_evalPrior.R |only R/xxirt_parTheta_extract_freeParameters.R |only R/xxirt_partable_extract_freeParameters.R |only R/xxirt_partable_include_freeParameters.R |only R/xxirt_postproc_parameters.R |only R/xxirt_proc_ParTable.R |only R/xxirt_vcov.R |only data/data.activity.itempars.rda |binary data/data.big5.qgraph.rda |binary data/data.big5.rda |binary data/data.bs07a.rda |binary data/data.eid.rda |binary data/data.ess2005.rda |binary data/data.g308.rda |binary data/data.inv4gr.rda |binary data/data.liking.science.rda |binary data/data.long.rda |binary data/data.lsem01.rda |binary data/data.math.rda |binary data/data.mcdonald.LSAT6.rda |binary data/data.mcdonald.act15.rda |binary data/data.mcdonald.rape.rda |binary data/data.mixed1.rda |binary data/data.ml1.rda |binary data/data.ml2.rda |binary data/data.noharm18.rda |binary data/data.noharmExC.rda |binary data/data.pars1.2pl.rda |binary data/data.pars1.rasch.rda |binary data/data.pirlsmissing.rda |binary data/data.pisaMath.rda |binary data/data.pisaPars.rda |binary data/data.pisaRead.rda |binary data/data.pw01.rda |binary data/data.ratings1.rda |binary data/data.ratings2.rda |binary data/data.ratings3.rda |binary data/data.raw1.rda |binary data/data.read.rda |binary data/data.reck21.rda |binary data/data.reck61DAT1.rda |binary data/data.reck61DAT2.rda |binary data/data.reck73C1a.rda |binary data/data.reck73C1b.rda |binary data/data.reck75C2.rda |binary data/data.reck78ExA.rda |binary data/data.reck79ExB.rda |binary data/data.si01.rda |binary data/data.si02.rda |binary data/data.si03.rda |binary data/data.si04.rda |binary data/data.si05.rda |binary data/data.si06.rda |binary data/data.timss.rda |binary data/data.timss07.G8.RUS.rda |binary inst/NEWS | 20 + man/amh.Rd |only man/brm.sim.Rd | 4 man/data.si.Rd | 2 man/data.wide2long.Rd | 2 man/dif.logistic.regression.Rd | 2 man/dirichlet.mle.Rd | 4 man/equating.rasch.Rd | 2 man/fuzcluster.Rd | 2 man/gom.em.Rd | 2 man/greenyang.reliability.Rd | 3 man/invariance.alignment.Rd | 2 man/latent.regression.em.raschtype.Rd | 4 man/linking.haberman.Rd | 6 man/linking.robust.Rd | 2 man/mcmc.2pno.Rd | 2 man/mcmc.2pno.ml.Rd | 2 man/mcmc.2pnoh.Rd | 2 man/mcmc.3pno.testlet.Rd | 4 man/mcmc_coef.Rd |only man/md.pattern.sirt.Rd | 2 man/mirt.wrapper.Rd | 17 - man/nedelsky.sim.Rd | 6 man/noharm.sirt.Rd | 2 man/person.parameter.rasch.copula.Rd | 2 man/plausible.value.imputation.raschtype.Rd | 6 man/rasch.copula.Rd | 8 man/rasch.evm.pcm.Rd | 2 man/rasch.jml.Rd | 25 + man/rasch.jml.jackknife1.Rd | 2 man/rasch.mirtlc.Rd | 4 man/rasch.mml.Rd | 12 man/rasch.pairwise.itemcluster.Rd | 2 man/rasch.pml.Rd | 6 man/rasch.va.Rd | 2 man/rinvgamma2.Rd |only man/sim.qm.ramsay.Rd | 2 man/sim.rasch.dep.Rd | 4 man/sirt-package.Rd | 302 ++++++++++++--------- man/smirt.Rd | 8 man/unidim.test.csn.Rd | 2 man/xxirt.Rd |only man/xxirt_createParTable.Rd |only man/xxirt_createThetaDistribution.Rd |only 155 files changed, 643 insertions(+), 398 deletions(-)
Title: Compute the Rectangular Statistical Cartogram
Description: Provides an interface and a C++ implementation
of the RecMap MP2 construction heuristic (see 'citation("recmap")'
for details). This algorithm draws maps according to a given statistical
value (e. g. election results, population or epidemiological data).
The basic idea of the RecMap algorithm is that each map region
(e. g. different countries) is represented by a rectangle. The area of
each rectangle represents the statistical value given as input
(maintain zero cartographic error).
Documentation about 'RecMap' is provided by a vignette included in this
package and a 'RecMap gallery' site at
<http://cartodraw.science/recmap/gallery>.
Author: Christian Panse
Maintainer: Christian Panse <Christian.Panse@gmail.com>
Diff between recmap versions 0.2.1 dated 2016-05-02 and 0.3.0 dated 2016-05-30
DESCRIPTION | 20 +- MD5 | 38 ++-- NAMESPACE | 1 R/RcppExports.R | 4 R/recmap.R | 66 ++++++- README.md |only build/vignette.rds |binary inst/CITATION | 7 inst/NEWS.Rd | 19 +- inst/doc/recmap.R | 49 +++-- inst/doc/recmap.Rmd | 155 +++++++++-------- inst/doc/recmap.html | 180 +++++++++++-------- man/plot_recmap.Rd | 13 - man/recmap.Rd | 194 ++++++++++++++++++--- src/RcppExports.cpp | 8 src/Rrecmap.cpp | 28 +-- src/recmap.h | 364 +++++++++++++++++++++------------------- tests/testthat/test-get_angle.R | 14 - tests/testthat/test-recmap.R |only vignettes/recmap.Rmd | 155 +++++++++-------- vignettes/recmap.bib | 22 ++ 21 files changed, 855 insertions(+), 482 deletions(-)
Title: Tools for Multiple Imputation in Multilevel Modeling
Description: Provides tools for multiple imputation of missing data in multilevel
modeling. Includes a user-friendly interface to the packages 'pan' and 'jomo',
and several functions for visualization, data management and the analysis
of multiply imputed data sets.
Author: Simon Grund [aut,cre], Alexander Robitzsch [aut], Oliver Luedtke [aut]
Maintainer: Simon Grund <grund@ipn.uni-kiel.de>
Diff between mitml versions 0.3-1 dated 2016-05-11 and 0.3-2 dated 2016-05-30
DESCRIPTION | 8 - MD5 | 16 +- NEWS | 13 ++ R/internal-convergence.R | 16 ++ R/plot.mitml.R | 297 +++++++++++++++++++++++++++++++++++++---------- R/print.mitml.summary.R | 79 +++++++++--- R/summary.mitml.R | 77 +++++++++--- man/plot.mitml.Rd | 33 ++++- man/summary.mitml.Rd | 22 +-- 9 files changed, 437 insertions(+), 124 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre],
Michael Dietze [aut],
Christoph Burow [aut, trl, dtc],
Margret C. Fuchs [aut],
Christoph Schmidt [aut],
Manfred Fischer [aut, trl],
Johannes Friedrich [aut],
Norbert Mercier [aut],
Rachel K. Smedley [aut],
Julie Durcan [aut],
Georgina King [aut],
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between Luminescence versions 0.5.1 dated 2015-12-07 and 0.6.0 dated 2016-05-30
Luminescence-0.5.1/Luminescence/man/Risoe.BINfileData2RLum.Data.Curve.Rd |only Luminescence-0.6.0/Luminescence/DESCRIPTION | 75 Luminescence-0.6.0/Luminescence/MD5 | 280 +- Luminescence-0.6.0/Luminescence/NAMESPACE | 38 Luminescence-0.6.0/Luminescence/NEWS | 848 +++----- Luminescence-0.6.0/Luminescence/R/Analyse_SAR.OSLdata.R | 3 Luminescence-0.6.0/Luminescence/R/Luminescence-package.R | 46 Luminescence-0.6.0/Luminescence/R/RLum-class.R | 24 Luminescence-0.6.0/Luminescence/R/RLum.Analysis-class.R | 400 ++-- Luminescence-0.6.0/Luminescence/R/RLum.Data.Curve-class.R | 158 + Luminescence-0.6.0/Luminescence/R/RLum.Data.Image-class.R | 112 - Luminescence-0.6.0/Luminescence/R/RLum.Data.Spectrum-class.R | 135 - Luminescence-0.6.0/Luminescence/R/RLum.Results-class.R | 238 +- Luminescence-0.6.0/Luminescence/R/RcppExports.R | 4 Luminescence-0.6.0/Luminescence/R/Risoe.BINfileData2RLum.Analysis.R | 271 +- Luminescence-0.6.0/Luminescence/R/Risoe.BINfileData2RLum.Data.Curve.R | 135 - Luminescence-0.6.0/Luminescence/R/RisoeBINfileData-class.R | 3 Luminescence-0.6.0/Luminescence/R/analyse_IRSAR.RF.R | 670 ++++-- Luminescence-0.6.0/Luminescence/R/analyse_SAR.CWOSL.R | 329 ++- Luminescence-0.6.0/Luminescence/R/analyse_baSAR.R |only Luminescence-0.6.0/Luminescence/R/analyse_pIRIRSequence.R | 31 Luminescence-0.6.0/Luminescence/R/app_RLum.R |only Luminescence-0.6.0/Luminescence/R/apply_CosmicRayRemoval.R | 246 +- Luminescence-0.6.0/Luminescence/R/apply_EfficiencyCorrection.R | 39 Luminescence-0.6.0/Luminescence/R/bin_RLum.Data.R |only Luminescence-0.6.0/Luminescence/R/calc_AliquotSize.R | 10 Luminescence-0.6.0/Luminescence/R/calc_CentralDose.R | 2 Luminescence-0.6.0/Luminescence/R/calc_CommonDose.R | 2 Luminescence-0.6.0/Luminescence/R/calc_FadingCorr.R | 172 - Luminescence-0.6.0/Luminescence/R/calc_FastRatio.R |only Luminescence-0.6.0/Luminescence/R/calc_FiniteMixture.R | 2 Luminescence-0.6.0/Luminescence/R/calc_FuchsLang2001.R | 2 Luminescence-0.6.0/Luminescence/R/calc_HomogeneityTest.R | 2 Luminescence-0.6.0/Luminescence/R/calc_IEU.R | 2 Luminescence-0.6.0/Luminescence/R/calc_MinDose.R | 175 + Luminescence-0.6.0/Luminescence/R/calc_OSLLxTxRatio.R | 56 Luminescence-0.6.0/Luminescence/R/calc_Statistics.R | 111 - Luminescence-0.6.0/Luminescence/R/calc_ThermalLifetime.R |only Luminescence-0.6.0/Luminescence/R/calc_gSGC.R | 94 Luminescence-0.6.0/Luminescence/R/extract_IrradiationTimes.R | 90 Luminescence-0.6.0/Luminescence/R/fit_LMCurve.R | 49 Luminescence-0.6.0/Luminescence/R/get_Layout.R | 146 - Luminescence-0.6.0/Luminescence/R/get_Quote.R | 8 Luminescence-0.6.0/Luminescence/R/get_RLum.R | 62 Luminescence-0.6.0/Luminescence/R/internals_RLum.R | 40 Luminescence-0.6.0/Luminescence/R/length_RLum.R | 13 Luminescence-0.6.0/Luminescence/R/merge_RLum.Analysis.R | 27 Luminescence-0.6.0/Luminescence/R/merge_RLum.Data.Curve.R | 63 Luminescence-0.6.0/Luminescence/R/merge_RLum.R | 9 Luminescence-0.6.0/Luminescence/R/merge_RLum.Results.R | 26 Luminescence-0.6.0/Luminescence/R/methods_RLum.R | 95 Luminescence-0.6.0/Luminescence/R/model_LuminescenceSignals.R |only Luminescence-0.6.0/Luminescence/R/plot_AbanicoPlot.R | 783 +++++-- Luminescence-0.6.0/Luminescence/R/plot_DRTResults.R | 86 Luminescence-0.6.0/Luminescence/R/plot_DetPlot.R |only Luminescence-0.6.0/Luminescence/R/plot_FilterCombinations.R |only Luminescence-0.6.0/Luminescence/R/plot_GrowthCurve.R | 201 +- Luminescence-0.6.0/Luminescence/R/plot_Histogram.R | 227 +- Luminescence-0.6.0/Luminescence/R/plot_KDE.R | 996 ++++++---- Luminescence-0.6.0/Luminescence/R/plot_NRt.R | 4 Luminescence-0.6.0/Luminescence/R/plot_RLum.Analysis.R | 584 +++-- Luminescence-0.6.0/Luminescence/R/plot_RLum.Data.Curve.R | 51 Luminescence-0.6.0/Luminescence/R/plot_RLum.Data.Spectrum.R | 136 + Luminescence-0.6.0/Luminescence/R/plot_RLum.R | 2 Luminescence-0.6.0/Luminescence/R/plot_RLum.Results.R | 160 + Luminescence-0.6.0/Luminescence/R/plot_RadialPlot.R | 4 Luminescence-0.6.0/Luminescence/R/plot_ViolinPlot.R | 61 Luminescence-0.6.0/Luminescence/R/read_BIN2R.R | 407 ++-- Luminescence-0.6.0/Luminescence/R/read_Daybreak2R.R | 11 Luminescence-0.6.0/Luminescence/R/read_SPE2R.R | 21 Luminescence-0.6.0/Luminescence/R/read_XSYG2R.R | 62 Luminescence-0.6.0/Luminescence/R/report_RLum.R |only Luminescence-0.6.0/Luminescence/R/set_RLum.R | 98 Luminescence-0.6.0/Luminescence/R/structure_RLum.R | 32 Luminescence-0.6.0/Luminescence/R/verify_SingleGrainData.R |only Luminescence-0.6.0/Luminescence/R/write_R2BIN.R | 21 Luminescence-0.6.0/Luminescence/R/zzz.R | 1 Luminescence-0.6.0/Luminescence/data/ExampleData.BINfileData.RData |binary Luminescence-0.6.0/Luminescence/data/ExampleData.RLum.Analysis.RData |binary Luminescence-0.6.0/Luminescence/data/ExampleData.XSYG.RData |binary Luminescence-0.6.0/Luminescence/inst/NEWS.Rd | 703 ++----- Luminescence-0.6.0/Luminescence/inst/doc/S4classObjects.pdf |binary Luminescence-0.6.0/Luminescence/man/Analyse_SAR.OSLdata.Rd | 5 Luminescence-0.6.0/Luminescence/man/ExampleData.DeValues.Rd | 36 Luminescence-0.6.0/Luminescence/man/Luminescence-package.Rd | 28 Luminescence-0.6.0/Luminescence/man/RLum-class.Rd | 13 Luminescence-0.6.0/Luminescence/man/RLum.Analysis-class.Rd | 29 Luminescence-0.6.0/Luminescence/man/RLum.Data.Curve-class.Rd | 29 Luminescence-0.6.0/Luminescence/man/RLum.Data.Image-class.Rd | 14 Luminescence-0.6.0/Luminescence/man/RLum.Data.Spectrum-class.Rd | 10 Luminescence-0.6.0/Luminescence/man/RLum.Results-class.Rd | 22 Luminescence-0.6.0/Luminescence/man/Risoe.BINfileData-class.Rd | 1 Luminescence-0.6.0/Luminescence/man/Risoe.BINfileData2RLum.Analysis.Rd | 18 Luminescence-0.6.0/Luminescence/man/analyse_IRSAR.RF.Rd | 69 Luminescence-0.6.0/Luminescence/man/analyse_SAR.CWOSL.Rd | 41 Luminescence-0.6.0/Luminescence/man/analyse_baSAR.Rd |only Luminescence-0.6.0/Luminescence/man/analyse_pIRIRSequence.Rd | 2 Luminescence-0.6.0/Luminescence/man/app_RLum.Rd |only Luminescence-0.6.0/Luminescence/man/apply_CosmicRayRemoval.Rd | 21 Luminescence-0.6.0/Luminescence/man/apply_EfficiencyCorrection.Rd | 12 Luminescence-0.6.0/Luminescence/man/bin_RLum.Data.Rd |only Luminescence-0.6.0/Luminescence/man/calc_AliquotSize.Rd | 6 Luminescence-0.6.0/Luminescence/man/calc_CentralDose.Rd | 2 Luminescence-0.6.0/Luminescence/man/calc_CommonDose.Rd | 2 Luminescence-0.6.0/Luminescence/man/calc_FadingCorr.Rd | 16 Luminescence-0.6.0/Luminescence/man/calc_FastRatio.Rd |only Luminescence-0.6.0/Luminescence/man/calc_FiniteMixture.Rd | 2 Luminescence-0.6.0/Luminescence/man/calc_FuchsLang2001.Rd | 2 Luminescence-0.6.0/Luminescence/man/calc_HomogeneityTest.Rd | 2 Luminescence-0.6.0/Luminescence/man/calc_IEU.Rd | 2 Luminescence-0.6.0/Luminescence/man/calc_MinDose.Rd | 63 Luminescence-0.6.0/Luminescence/man/calc_OSLLxTxRatio.Rd | 38 Luminescence-0.6.0/Luminescence/man/calc_Statistics.Rd | 26 Luminescence-0.6.0/Luminescence/man/calc_ThermalLifetime.Rd |only Luminescence-0.6.0/Luminescence/man/calc_gSGC.Rd | 11 Luminescence-0.6.0/Luminescence/man/extract_IrradiationTimes.Rd | 14 Luminescence-0.6.0/Luminescence/man/fit_LMCurve.Rd | 2 Luminescence-0.6.0/Luminescence/man/get_Layout.Rd | 2 Luminescence-0.6.0/Luminescence/man/get_Quote.Rd | 2 Luminescence-0.6.0/Luminescence/man/get_RLum.Rd | 7 Luminescence-0.6.0/Luminescence/man/length_RLum.Rd | 3 Luminescence-0.6.0/Luminescence/man/merge_RLum.Analysis.Rd | 2 Luminescence-0.6.0/Luminescence/man/merge_RLum.Data.Curve.Rd | 31 Luminescence-0.6.0/Luminescence/man/merge_RLum.Rd | 8 Luminescence-0.6.0/Luminescence/man/merge_RLum.Results.Rd | 10 Luminescence-0.6.0/Luminescence/man/methods_RLum.Rd | 36 Luminescence-0.6.0/Luminescence/man/model_LuminescenceSignals.Rd |only Luminescence-0.6.0/Luminescence/man/plot_AbanicoPlot.Rd | 62 Luminescence-0.6.0/Luminescence/man/plot_DRTResults.Rd | 4 Luminescence-0.6.0/Luminescence/man/plot_DetPlot.Rd |only Luminescence-0.6.0/Luminescence/man/plot_FilterCombinations.Rd |only Luminescence-0.6.0/Luminescence/man/plot_GrowthCurve.Rd | 15 Luminescence-0.6.0/Luminescence/man/plot_Histogram.Rd | 23 Luminescence-0.6.0/Luminescence/man/plot_KDE.Rd | 132 - Luminescence-0.6.0/Luminescence/man/plot_RLum.Analysis.Rd | 44 Luminescence-0.6.0/Luminescence/man/plot_RLum.Data.Curve.Rd | 8 Luminescence-0.6.0/Luminescence/man/plot_RLum.Data.Spectrum.Rd | 32 Luminescence-0.6.0/Luminescence/man/plot_RLum.Rd | 2 Luminescence-0.6.0/Luminescence/man/plot_RLum.Results.Rd | 4 Luminescence-0.6.0/Luminescence/man/plot_RadialPlot.Rd | 4 Luminescence-0.6.0/Luminescence/man/plot_ViolinPlot.Rd | 9 Luminescence-0.6.0/Luminescence/man/read_BIN2R.Rd | 42 Luminescence-0.6.0/Luminescence/man/read_Daybreak2R.Rd | 2 Luminescence-0.6.0/Luminescence/man/read_SPE2R.Rd | 3 Luminescence-0.6.0/Luminescence/man/read_XSYG2R.Rd | 3 Luminescence-0.6.0/Luminescence/man/report_RLum.Rd |only Luminescence-0.6.0/Luminescence/man/set_RLum.Rd | 15 Luminescence-0.6.0/Luminescence/man/structure_RLum.Rd | 17 Luminescence-0.6.0/Luminescence/man/verify_SingleGrainData.Rd |only Luminescence-0.6.0/Luminescence/man/write_R2BIN.Rd | 3 Luminescence-0.6.0/Luminescence/src/RcppExports.cpp | 10 Luminescence-0.6.0/Luminescence/src/create_UID.cpp |only 152 files changed, 6706 insertions(+), 4361 deletions(-)
Title: Variable Selection in Clustering by Mixture Models for Discrete
Data
Description: An implementation of a variable selection procedure in clustering by mixture models for discrete data (clustMMDD). Genotype data are examples of such data with two unordered observations (alleles) at each locus for diploid individual. The two-fold problem of variable selection and clustering is seen as a model selection problem where competing models are characterized by the number of clusters K, and the subset S of clustering variables. Competing models are compared by penalized maximum likelihood criteria. We considered asymptotic criteria such as Akaike and Bayesian Information criteria, and a family of penalized criteria with penalty function to be data driven calibrated.
Author: Wilson Toussile
Maintainer: Wilson Toussile <wilson.toussile@gmail.com>
Diff between ClustMMDD versions 1.0.3 dated 2016-02-21 and 1.0.4 dated 2016-05-30
DESCRIPTION | 10 +- MD5 | 6 - R/zzz.R | 4 src/ClustMMDD.cpp | 249 ++++++++++++++++++++++++++++-------------------------- 4 files changed, 142 insertions(+), 127 deletions(-)
Title: Extreme Value Analysis with Goodness-of-Fit Testing
Description: Goodness-of-fit tests for selection of r in the r-largest order
statistics (GEVr) model. Goodness-of-fit tests for threshold selection in the
Generalized Pareto distribution (GPD). Random number generation and density functions
for the GEVr distribution. Profile likelihood for return level estimation
using the GEVr and Generalized Pareto distributions. P-value adjustments for
sequential, multiple testing error control. Non-stationary fitting of GEVr and
GPD, with availability for bootstrap based standard errors in the GEV1 setting
to handle dependence.
Author: Brian Bader [aut, cre],
Jun Yan [ctb]
Maintainer: Brian Bader <brianbader@mail.com>
Diff between eva versions 0.2.2 dated 2016-05-02 and 0.2.3 dated 2016-05-30
DESCRIPTION | 18 ++--- MD5 | 30 ++++---- NAMESPACE | 2 R/eva.R |only R/gevCIboot.R |only R/gevrEd.R | 1 R/gevrFit.R | 61 ++++++++++++----- R/gevrSeqTests.R | 2 R/gpdAd.R | 1 R/gpdFit.R | 45 +++++++----- R/gpdSeqTests.R | 1 build/vignette.rds |binary inst/doc/introduction.R | 50 ++++++++------ inst/doc/introduction.Rmd | 58 +++++++++------- inst/doc/introduction.html | 158 +++++++++++++++++++++++++++++++-------------- man/eva.Rd |only man/gevCIboot.Rd |only vignettes/introduction.Rmd | 58 +++++++++------- 18 files changed, 307 insertions(+), 178 deletions(-)
Title: Bayesian Fractional Polynomials
Description: Implements the Bayesian paradigm for fractional
polynomial models under the assumption of normally distributed error terms.
Author: Daniel Sabanes Bove <sabanesd@roche.com>
Maintainer: Daniel Sabanes Bove <sabanesd@roche.com>
Diff between bfp versions 0.0-30 dated 2016-03-09 and 0.0-31 dated 2016-05-30
ChangeLog | 4 ++++ DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- data/ozone.RData |binary inst/CITATION | 38 +++++++++++++++++++------------------- 5 files changed, 33 insertions(+), 29 deletions(-)
Title: Interface to the ASSP Library
Description: A wrapper around Michel Scheffers's libassp (Advanced
Speech Signal Processor). The libassp library aims at providing
functionality for handling speech signal files in most common audio formats
and for performing analyses common in phonetic science/speech science. This
includes the calculation of formants, fundamental frequency, root mean
square, auto correlation, a variety of spectral analyses, zero crossing
rate, filtering etc. This wrapper provides R with a large subset of
libassp's signal processing functions and provides them to the user in a
(hopefully) user-friendly manner.
Author: Raphael Winkelmann [aut, cre],
Lasse Bombien [aut],
Michel Scheffers [aut]
Maintainer: Raphael Winkelmann <raphael@phonetik.uni-muenchen.de>
Diff between wrassp versions 0.1.3 dated 2014-12-01 and 0.1.4 dated 2016-05-30
wrassp-0.1.3/wrassp/vignettes/figure |only wrassp-0.1.4/wrassp/DESCRIPTION | 21 wrassp-0.1.4/wrassp/MD5 | 131 +- wrassp-0.1.4/wrassp/NAMESPACE | 2 wrassp-0.1.4/wrassp/NEWS.md |only wrassp-0.1.4/wrassp/R/acfana.R | 9 wrassp-0.1.4/wrassp/R/afdiff.R | 9 wrassp-0.1.4/wrassp/R/affilter.R | 10 wrassp-0.1.4/wrassp/R/cepstrum.R | 9 wrassp-0.1.4/wrassp/R/cssSpectrum.R | 10 wrassp-0.1.4/wrassp/R/dftSpectrum.R | 10 wrassp-0.1.4/wrassp/R/forest.R | 9 wrassp-0.1.4/wrassp/R/ksvF0.R | 13 wrassp-0.1.4/wrassp/R/lpsSpectrum.R | 9 wrassp-0.1.4/wrassp/R/mhsF0.R | 9 wrassp-0.1.4/wrassp/R/rfcana.R | 10 wrassp-0.1.4/wrassp/R/rmsana.R | 10 wrassp-0.1.4/wrassp/R/wrassp-packageDocs.R |only wrassp-0.1.4/wrassp/R/zcrana.R | 9 wrassp-0.1.4/wrassp/README.md | 37 wrassp-0.1.4/wrassp/build/vignette.rds |binary wrassp-0.1.4/wrassp/inst/doc/wrassp_intro.R | 4 wrassp-0.1.4/wrassp/inst/doc/wrassp_intro.Rmd | 9 wrassp-0.1.4/wrassp/inst/doc/wrassp_intro.html | 635 ++++---------- wrassp-0.1.4/wrassp/man/AsspDataFormat.Rd | 9 wrassp-0.1.4/wrassp/man/AsspFileFormat.Rd | 15 wrassp-0.1.4/wrassp/man/AsspFileFormats.Rd | 3 wrassp-0.1.4/wrassp/man/AsspLpTypes.Rd | 3 wrassp-0.1.4/wrassp/man/AsspSpectTypes.Rd | 3 wrassp-0.1.4/wrassp/man/AsspWindowTypes.Rd | 3 wrassp-0.1.4/wrassp/man/acfana.Rd | 26 wrassp-0.1.4/wrassp/man/addTrack.Rd | 3 wrassp-0.1.4/wrassp/man/afdiff.Rd | 22 wrassp-0.1.4/wrassp/man/affilter.Rd | 24 wrassp-0.1.4/wrassp/man/cepstrum.Rd | 20 wrassp-0.1.4/wrassp/man/cssSpectrum.Rd | 20 wrassp-0.1.4/wrassp/man/delTrack.Rd | 3 wrassp-0.1.4/wrassp/man/dftSpectrum.Rd | 20 wrassp-0.1.4/wrassp/man/dur.AsspDataObj.Rd | 3 wrassp-0.1.4/wrassp/man/forest.Rd | 28 wrassp-0.1.4/wrassp/man/is.AsspDataObj.Rd | 3 wrassp-0.1.4/wrassp/man/isAsspLpType.Rd | 3 wrassp-0.1.4/wrassp/man/isAsspSpectType.Rd | 3 wrassp-0.1.4/wrassp/man/isAsspWindowType.Rd | 3 wrassp-0.1.4/wrassp/man/ksvF0.Rd | 23 wrassp-0.1.4/wrassp/man/lpsSpectrum.Rd | 20 wrassp-0.1.4/wrassp/man/mhsF0.Rd | 20 wrassp-0.1.4/wrassp/man/prepareFiles.Rd | 7 wrassp-0.1.4/wrassp/man/print.AsspDataObj.Rd | 3 wrassp-0.1.4/wrassp/man/read.AsspDataObj.Rd | 5 wrassp-0.1.4/wrassp/man/rfcana.Rd | 24 wrassp-0.1.4/wrassp/man/rmsana.Rd | 20 wrassp-0.1.4/wrassp/man/tracks.AsspDataObj.Rd | 3 wrassp-0.1.4/wrassp/man/useWrasspLogger.Rd | 6 wrassp-0.1.4/wrassp/man/wrassp-package.Rd |only wrassp-0.1.4/wrassp/man/wrassp.logger.Rd | 7 wrassp-0.1.4/wrassp/man/wrasspOutputInfos.Rd | 62 - wrassp-0.1.4/wrassp/man/write.AsspDataObj.Rd | 3 wrassp-0.1.4/wrassp/man/zcrana.Rd | 20 wrassp-0.1.4/wrassp/src/assp/ksv.c | 7 wrassp-0.1.4/wrassp/tests/testthat/test_alternOutputDir.R | 3 wrassp-0.1.4/wrassp/tests/testthat/test_badCalls.R | 1 wrassp-0.1.4/wrassp/tests/testthat/test_fileIO.R | 1 wrassp-0.1.4/wrassp/tests/testthat/test_libasspVSwrassp.R | 1 wrassp-0.1.4/wrassp/tests/testthat/test_logging.R | 9 wrassp-0.1.4/wrassp/tests/testthat/test_signalProc.R | 26 wrassp-0.1.4/wrassp/vignettes/wrassp_intro.Rmd | 9 67 files changed, 650 insertions(+), 812 deletions(-)
Title: Sustainable Transport Planning
Description: Functionality and data access tools for transport planning,
including origin-destination analysis, route allocation and modelling travel
patterns.
Author: Robin Lovelace [aut, cre],
Richard Ellison [aut],
Barry Rowlingson [aut] (Author of overline),
Nick Bearman [aut] (Co-author of gclip)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.1.1 dated 2016-01-16 and 0.1.2 dated 2016-05-30
DESCRIPTION | 8 - MD5 | 51 +++++++---- NAMESPACE | 12 ++ NEWS | 19 ++++ R/cyclestreets.R |only R/geo-functions.R | 19 ++++ R/google-functions.R |only R/linefuns.R |only R/od-funs.R | 171 +++++++++++++++++++++++--------------- R/osrmfunctions.R | 56 +++++++++--- R/radiate.R |only R/route-transport-api.R |only R/routes.R | 12 ++ build/vignette.rds |binary inst/doc/introducing-stplanr.Rmd | 7 + inst/doc/introducing-stplanr.html | 147 +++++++++++++++++++------------- man/bb2poly.Rd |only man/dist_google.Rd |only man/is_linepoint.Rd |only man/line2points.Rd | 1 man/line2route.Rd | 50 +++-------- man/locate2spdf.Rd | 2 man/n_vertices.Rd |only man/nearest2spdf.Rd | 2 man/nearest_cyclestreets.Rd |only man/nearest_google.Rd |only man/nearest_osm.Rd |only man/od_radiation.Rd |only man/points2flow.Rd |only man/points2odf.Rd |only man/route_graphhopper.Rd | 2 man/route_transportapi_public.Rd |only man/table2matrix.Rd | 2 man/update_line_geometry.Rd |only vignettes/introducing-stplanr.Rmd | 7 + 35 files changed, 362 insertions(+), 206 deletions(-)
Title: Randomization Inference Tools
Description: Tools for randomization inference.
Author: Jake Bowers <jwbowers@illinois.edu>, Mark Fredrickson
<mark.m.fredrickson@gmail.com>, and Ben Hansen <ben.hansen@umich.edu>
Maintainer: Jake Bowers <jwbowers@illinois.edu>
Diff between RItools versions 0.1-13 dated 2016-01-17 and 0.1-15 dated 2016-05-30
DESCRIPTION | 14 - MD5 | 51 +++-- NAMESPACE | 2 NEWS | 14 + R/flatten.xbalresult.R | 8 R/harmonic.R | 5 R/naImpute.R | 8 R/print.xbal.R | 2 R/ritools-package.R | 1 R/utils.R | 16 + R/xBalance.find.goodstrats.R | 7 R/xBalance.make.stratwts.R | 10 + R/xBalance.makeMM.R | 6 R/xBalance.makepooledsd.R | 7 R/xBalanceEngine.R | 15 + README.md |only inst/doc/RItools.pdf |binary man/flatten.xbalresult.Rd |only man/harmonic.Rd |only man/makePval.Rd |only man/naImpute.Rd |only man/withOptions.Rd |only man/xBalance.find.goodstrats.Rd |only man/xBalance.make.stratwts.Rd |only man/xBalance.makeMM.Rd |only man/xBalance.makepooledsd.Rd |only man/xBalanceEngine.Rd |only tests/naImputeTests.Rout.save | 43 ++-- tests/testthat/test.plot.xbal.R | 4 tests/testthat/test.utils.R | 11 + tests/xBalanceTests.Rout.save | 385 ++++++++++++++++++++-------------------- tests/xBalanceTests2.Rout.save | 75 ++++--- 32 files changed, 412 insertions(+), 272 deletions(-)
Title: Data Integration Feature for Force.com and Salesforce.com
Description: Insert, update,
retrieve, delete and bulk operate datasets with a SaaS based CRM
Salesforce.com and a PaaS based application platform Force.com from R.
Author: Takekatsu Hiramura [aut, cre],
Steven Mortimer [ctb],
Alexis Iglauer [ctb]
Maintainer: Takekatsu Hiramura <thira@plavox.info>
Diff between RForcecom versions 0.8 dated 2015-10-26 and 0.9 dated 2016-05-30
DESCRIPTION | 15 +-- MD5 | 49 +++++------ NAMESPACE | 2 R/RForcecom.R | 6 - R/rforcecom.createBulkBatch.R | 18 +++- R/rforcecom.createBulkJob.R | 23 ++++- R/rforcecom.insertBulkAttachments.R | 2 R/rforcecom.login.R | 16 +-- R/rforcecom.query.R | 36 +------- R/rforcecom.queryMore.R | 35 +------- R/rforcecom.search.R | 29 +++--- R/rforcecom.submitBulkQuery.R | 2 R/rforcecom.utils.R |only man/RForcecom.Rd | 144 ++++++++++++++++----------------- man/rforcecom.abortBulkJob.Rd | 2 man/rforcecom.bulkQuery.Rd | 10 +- man/rforcecom.checkBatchStatus.Rd | 2 man/rforcecom.closeBulkJob.Rd | 2 man/rforcecom.createBulkBatch.Rd | 30 ++++-- man/rforcecom.createBulkJob.Rd | 22 +++-- man/rforcecom.getBatchDetails.Rd | 4 man/rforcecom.getBulkQueryResult.Rd | 12 +- man/rforcecom.insertBulkAttachments.Rd | 8 - man/rforcecom.login.Rd | 12 +- man/rforcecom.retrieve.Rd | 4 man/rforcecom.submitBulkQuery.Rd | 4 26 files changed, 246 insertions(+), 243 deletions(-)
Title: Parallel Tree
Description:
Provides two functions: Group_function() and Parallel_Tree(). Group_function() applies a given function (e.g.,mean()) to input variable(s) by group across levels. Has additional data management options.
Parallel_Tree() uses 'ggplot2' to create a parallel coordinate plots (technically a facsimile of parallel coordinate plots in a Cartesian coordinate system).
Used in combination these functions can create parallel tree plots, a variant of parallel coordinate plots, which are useful for visualizing multilevel data.
Author: Patrick O'Keefe
Maintainer: Patrick O'Keefe <patrick.okeefe@vanderbilt.edu>
Diff between ParallelTree versions 0.1.0 dated 2016-04-27 and 0.1.1 dated 2016-05-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/Grouping_function.R | 11 ++++++----- R/Parallel_Tree.R | 36 ++++++++++++++++++++++++------------ man/Parallel_Tree.Rd | 21 ++++++++++++--------- 5 files changed, 49 insertions(+), 33 deletions(-)
Title: Non-Negative Matrix Factorization (NMF) using CUDA
Description: Wrapper package for the nmfgpu library, which implements several
Non-negative Matrix Factorization (NMF) algorithms for CUDA platforms.
By using the acceleration of GPGPU computing, the NMF can be used for
real-world problems inside the R environment. All CUDA devices starting with
Kepler architecture are supported by the library.
Author: Sven Koitka [aut, cre, cph],
Christoph M. Friedrich [ctb]
Maintainer: Sven Koitka <sven.koitka@fh-dortmund.de>
Diff between nmfgpu4R versions 0.2.4 dated 2016-04-27 and 0.2.5 dated 2016-05-30
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/Helper.h | 7 +++++++ 3 files changed, 13 insertions(+), 6 deletions(-)
Title: Tools to Evaluate DNA Profile Evidence
Description: Tools to determine DNA profile Weight of Evidence.
For further information see the likeLTD guide provided,
or Balding, D.J. (2013) <DOI:10.1073/pnas.1219739110>.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele <c.steele.11@ucl.ac.uk>
Diff between likeLTD versions 6.0.4 dated 2016-02-21 and 6.1.0 dated 2016-05-30
DESCRIPTION | 8 +-- MD5 | 29 +++++------ R/genetics.R | 4 - R/kMeans.R |only R/maximize-peaks.R | 45 +++++++++++------ R/objectives.R | 7 +- R/reports-peaks.R | 100 ++++++++++++++++++++++++++++++--------- build/vignette.rds |binary inst/doc/likeLTDguide.pdf |binary inst/doc/usage.pdf |binary man/allele.report.peaks.Rd | 6 +- man/evaluate.peaks.Rd | 3 - man/optimisation.params.peaks.Rd | 7 +- src/module.cpp | 2 src/objectives.cpp | 10 ++- src/objectives.h | 2 16 files changed, 153 insertions(+), 70 deletions(-)
Title: Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Description: Collection of functions and layers to enhance 'ggplot2'. The main
function is ggMarginal(), which can be used to add marginal
histograms/boxplots/density plots to 'ggplot2' scatterplots.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ggExtra versions 0.4.0 dated 2016-03-28 and 0.5 dated 2016-05-30
DESCRIPTION | 10 - MD5 | 19 +- NEWS.md | 18 ++ R/ggMarginal.R | 332 +++++++------------------------------------------ R/ggMarginalGadget.R | 10 + R/ggMarginalHelpers.R |only README.md | 8 + inst/doc/overview.Rmd | 4 inst/doc/overview.html | 54 ++++--- man/ggMarginal.Rd | 4 vignettes/overview.Rmd | 4 11 files changed, 137 insertions(+), 326 deletions(-)
Title: Network Visualization in the 'ggplot2' Framework
Description: Network visualization in the 'ggplot2' framework. Network
functionality is provided in a single 'ggplot2' layer by calling the geom 'net'.
Layouts are calculated using the 'sna' package, example networks are included.
Author: Samantha Tyner, Heike Hofmann
Maintainer: Samantha Tyner <sctyner@iastate.edu>
Diff between geomnet versions 0.0.1 dated 2015-12-30 and 0.1.0 dated 2016-05-30
DESCRIPTION | 12 +++++--- MD5 | 27 ++++++++++--------- NAMESPACE | 1 R/data.r | 18 +++++-------- R/geom-net.r | 61 ++++++++++++++++++++++++++++++++++---------- R/network-tools.r |only R/stat-net.r | 72 +++++++++++++++++++++++++++++++++++++++++----------- README.md | 10 +++++-- data/metro_map.rda |binary man/blood.Rd | 2 - man/football.Rd | 2 - man/geom_circle.Rd | 34 +++++++++++++----------- man/geom_net.Rd | 73 ++++++++++++++++++++++++++++++++++++----------------- man/jtt.Rd |only man/metro_map.Rd | 14 +++------- vignettes |only 16 files changed, 217 insertions(+), 109 deletions(-)
Title: Bibliometric and Co-Citation Analysis Tool
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS and
Thomson Reuters' ISI Web of Knowledge databases, performing bibliometric analysis
and building data matrices for co-citation, coupling and scientific collaboration analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 0.3 dated 2016-05-21 and 0.5 dated 2016-05-30
DESCRIPTION | 8 ++-- MD5 | 20 ++++++------ NAMESPACE | 6 +-- NEWS | 20 +++++++++++- R/citations.R | 40 ++++++++++++------------ R/localCitations.R |only inst/doc/bibliometrix-vignette.R | 6 +++ inst/doc/bibliometrix-vignette.Rmd | 12 ++++++- inst/doc/bibliometrix-vignette.html | 59 ++++++++++++++++++++---------------- man/citations.Rd | 2 - man/localCitations.Rd |only vignettes/bibliometrix-vignette.Rmd | 12 ++++++- 12 files changed, 119 insertions(+), 66 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 0.0-31 dated 2016-04-25 and 0.0-32 dated 2016-05-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/log.R | 6 ++---- inst/NEWS.Rd | 6 ++++++ 4 files changed, 15 insertions(+), 11 deletions(-)
Title: Irucka Embry's Miscellaneous Data Collection
Description: Miscellaneous data sets [Environmental/Water Resources
Engineering].
Author: Irucka Embry [aut, cre]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between iemiscdata versions 0.5.0 dated 2016-02-04 and 0.5.1 dated 2016-05-30
DESCRIPTION | 14 ++++++++------ MD5 | 11 +++++++++-- NEWS.md | 7 +++++++ build |only inst/doc |only vignettes |only 6 files changed, 24 insertions(+), 8 deletions(-)
Title: Irucka Embry's Miscellaneous Functions
Description: A collection of Irucka Embry's miscellaneous functions
(Engineering Economics, Environmental/Water Resources Engineering,
Geometry, Statistics, GNU Octave length functions, etc.).
Author: Irucka Embry [aut, cre]. Includes R source code and/or documentation
previously published by: Felix Andrews (zoo) and Hans Werner Borchers
(pracma). [Borrowed from DescTools description.]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between iemisc versions 0.5.1 dated 2016-05-18 and 0.6.2 dated 2016-05-30
DESCRIPTION | 10 +- MD5 | 26 ++--- NAMESPACE | 1 NEWS.md | 7 + R/Manningcirc.R | 196 ++++++++++++++++++++++++++++++++++++-------- R/Manningpara.R | 235 +++++++++++++++++++++++++++++++++++++++++++---------- R/Manningrect.R | 188 +++++++++++++++++++++++++++++++++++------- R/Manningtrap.R | 216 ++++++++++++++++++++++++++++++++++++++++-------- R/Manningtri.R | 189 +++++++++++++++++++++++++++++++++++------- man/Manningcirc.Rd | 89 ++++++++++++++------ man/Manningpara.Rd | 59 ++++++------- man/Manningrect.Rd | 47 +++++----- man/Manningtrap.Rd | 52 +++++------ man/Manningtri.Rd | 47 +++++----- 14 files changed, 1041 insertions(+), 321 deletions(-)
Title: Conditional Random Fields
Description: Implements modeling and computational tools for conditional
random fields (CRF) model as well as other probabilistic undirected
graphical models of discrete data with pairwise and unary potentials.
Author: Ling-Yun Wu [aut, cre]
Maintainer: Ling-Yun Wu <wulingyun@gmail.com>
Diff between CRF versions 0.3-8 dated 2014-07-30 and 0.3-9 dated 2016-05-30
DESCRIPTION | 20 +++---- MD5 | 130 +++++++++++++++++++++++----------------------- NAMESPACE | 2 R/decode.R | 2 R/train.R | 4 - data/Chain.RData |binary data/Clique.RData |binary data/Loop.RData |binary data/Rain.RData |binary data/Small.RData |binary data/Tree.RData |binary man/CRF-package.Rd | 75 +++++++++++++------------- man/Chain.Rd | 3 - man/Clique.Rd | 3 - man/Loop.Rd | 3 - man/Rain.Rd | 3 - man/Small.Rd | 3 - man/Tree.Rd | 3 - man/clamp.crf.Rd | 18 +++--- man/clamp.reset.Rd | 10 ++- man/crf.nll.Rd | 9 +-- man/crf.update.Rd | 7 +- man/decode.block.Rd | 5 + man/decode.chain.Rd | 5 + man/decode.conditional.Rd | 5 + man/decode.cutset.Rd | 5 + man/decode.exact.Rd | 5 + man/decode.greedy.Rd | 5 + man/decode.icm.Rd | 5 + man/decode.ilp.Rd | 5 + man/decode.junction.Rd | 5 + man/decode.lbp.Rd | 5 + man/decode.marginal.Rd | 5 + man/decode.sample.Rd | 5 + man/decode.trbp.Rd | 5 + man/decode.tree.Rd | 5 + man/duplicate.crf.Rd | 5 + man/get.logPotential.Rd | 3 - man/get.potential.Rd | 3 - man/infer.chain.Rd | 7 +- man/infer.conditional.Rd | 7 +- man/infer.cutset.Rd | 7 +- man/infer.exact.Rd | 7 +- man/infer.junction.Rd | 7 +- man/infer.lbp.Rd | 7 +- man/infer.sample.Rd | 7 +- man/infer.trbp.Rd | 7 +- man/infer.tree.Rd | 7 +- man/make.crf.Rd | 23 ++++---- man/make.features.Rd | 13 ++-- man/make.par.Rd | 3 - man/mrf.nll.Rd | 13 ++-- man/mrf.stat.Rd | 7 +- man/mrf.update.Rd | 3 - man/sample.chain.Rd | 5 + man/sample.conditional.Rd | 5 + man/sample.cutset.Rd | 5 + man/sample.exact.Rd | 5 + man/sample.gibbs.Rd | 5 + man/sample.junction.Rd | 5 + man/sample.tree.Rd | 5 + man/sub.crf.Rd | 14 +++- man/train.crf.Rd | 5 + man/train.mrf.Rd | 5 + src/JunctionTree.cpp | 10 ++- src/misc.h | 20 ++++++- 66 files changed, 369 insertions(+), 221 deletions(-)
Title: Estimate the Coefficients for Non-Convex Penalized Quantile
Regression Model by using QICD Algorithm
Description: Extremely fast algorithm "QICD", Iterative Coordinate
Descent Algorithm for High-dimensional Nonconvex Penalized Quantile
Regression. This algorithm combines the coordinate descent algorithm
in the inner iteration with the majorization minimization step
in the outside step. For each inner univariate minimization problem,
we only need to compute a one-dimensional weighted median,
which ensures fast computation. Tuning parameter selection is based
on two different method: the cross validation and BIC for
quantile regression model. Details are described in the Peng,B and Wang,L. (2015)
linked to via the URL below with <DOI:10.1080/10618600.2014.913516>.
Author: Bo Peng [aut, cre],
Rondall E. Jones [ctb],
John A. Wisniewski [ctb]
Maintainer: Bo Peng <peng0199@umn.edu>
Diff between QICD versions 1.0.1 dated 2016-02-29 and 1.1.1 dated 2016-05-30
DESCRIPTION | 8 - MD5 | 14 +-- R/BIC_QICD.R | 139 +++++++++++++++++---------------- R/QICD.R | 216 ++++++++++++++++++++++++++-------------------------- build/partial.rdb |binary man/QICD-package.Rd | 4 man/QICD.Rd | 6 - src/QCD.cpp | 2 8 files changed, 198 insertions(+), 191 deletions(-)
Title: Quick Wraps 2
Description: A collection of (wrapper) functions the creator found useful
for quickly placing data summaries and formatted regression results into
'.Rnw' or '.Rmd' files. Functions for generating commonly used graphics,
such as receiver operating curves or Bland-Altman plots, are also provided
by 'qwraps2'. 'qwraps2' is a updated version of a package 'qwraps'. The
original version 'qwraps' was never submitted to CRAN but can be found at
<https://github.com/dewittpe/qwraps/>. The implementation and limited scope
of the functions within 'qwraps2' <https://github.com/dewittpe/qwraps2/> is
fundamentally different from 'qwraps'.
Author: Peter DeWitt [aut, cre],
Tell Bennett [ctb]
Maintainer: Peter DeWitt <dewittpe@gmail.com>
Diff between qwraps2 versions 0.2.0 dated 2016-04-24 and 0.2.1 dated 2016-05-30
DESCRIPTION | 11 ++++--- MD5 | 16 +++++++---- NAMESPACE | 4 ++ R/RcppExports.R |only R/qable.R | 81 ++++++++++++++++++++++++++++++++++++++++++++++---------- R/qwraps2.R | 3 ++ man/logit.Rd |only man/qable.Rd | 79 +++++++++++++++++++++++++++++++++++++++++++++--------- src |only 9 files changed, 157 insertions(+), 37 deletions(-)