Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.6.3 dated 2016-05-12 and 0.6.4 dated 2016-06-16
DESCRIPTION | 8 +-- MD5 | 36 ++++++++--------- R/vardchangannual.R | 2 R/vardchanges.R | 2 R/vardcros.R | 2 R/vardom.R | 30 ++++++++++++-- R/vardom_othstr.R | 2 R/vardomh.R | 80 ++++++++++++++++++++++++++------------ R/variance_est.R | 100 ++++++++++++++++++++++++++++++++++-------------- inst/CITATION | 4 - inst/NEWS | 4 + man/vardchangannual.Rd | 2 man/vardchanges.Rd | 2 man/vardcros.Rd | 2 man/vardom.Rd | 21 ++++++---- man/vardom_othstr.Rd | 2 man/vardomh.Rd | 7 ++- man/vardpoor-package.Rd | 4 - man/variance_est.Rd | 5 +- 19 files changed, 213 insertions(+), 102 deletions(-)
Title: Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
Description: Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data. Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.
Author: Eric W. Goolsby, Jorn Bruggeman, Cecile Ane
Maintainer: Eric W. Goolsby <eric.goolsby.evolution@gmail.com>
Diff between Rphylopars versions 0.2.8 dated 2016-06-15 and 0.2.9 dated 2016-06-16
Rphylopars-0.2.8/Rphylopars/src/Rphylopars[Conflict].dll |only Rphylopars-0.2.9/Rphylopars/DESCRIPTION | 8 ++++---- Rphylopars-0.2.9/Rphylopars/MD5 | 5 ++--- Rphylopars-0.2.9/Rphylopars/man/Rphylopars-package.Rd | 4 ++-- 4 files changed, 8 insertions(+), 9 deletions(-)
Title: Bridging the Gap Between Qualitative Data and Quantitative
Analysis
Description: Automates many of the tasks associated with quantitative
discourse analysis of transcripts containing discourse
including frequency counts of sentence types, words, sentences,
turns of talk, syllables and other assorted analysis tasks. The
package provides parsing tools for preparing transcript data.
Many functions enable the user to aggregate data by any number
of grouping variables, providing analysis and seamless
integration with other R packages that undertake higher level
analysis and visualization of text. This affords the user a
more efficient and targeted analysis. 'qdap' is designed for
transcript analysis, however, many functions are applicable to
other areas of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between qdap versions 2.2.4 dated 2015-10-09 and 2.2.5 dated 2016-06-16
qdap-2.2.4/qdap/R/read.transcript.R |only qdap-2.2.5/qdap/DESCRIPTION | 9 qdap-2.2.5/qdap/MD5 | 898 +++++----- qdap-2.2.5/qdap/NAMESPACE | 2 qdap-2.2.5/qdap/NEWS | 21 qdap-2.2.5/qdap/R/chaining.R | 3 qdap-2.2.5/qdap/R/check_spelling.R | 4 qdap-2.2.5/qdap/R/common.R | 26 qdap-2.2.5/qdap/R/object_pronoun_type.R | 2 qdap-2.2.5/qdap/R/read_transcript.R |only qdap-2.2.5/qdap/README.md | 7 qdap-2.2.5/qdap/build/vignette.rds |binary qdap-2.2.5/qdap/data/DATA.SPLIT.rda |binary qdap-2.2.5/qdap/data/DATA.rda |binary qdap-2.2.5/qdap/data/DATA2.rda |binary qdap-2.2.5/qdap/data/env.syl.rda |binary qdap-2.2.5/qdap/data/hamlet.rda |binary qdap-2.2.5/qdap/data/mraja1.rda |binary qdap-2.2.5/qdap/data/mraja1spl.rda |binary qdap-2.2.5/qdap/data/pres_debate_raw2012.rda |binary qdap-2.2.5/qdap/data/pres_debates2012.rda |binary qdap-2.2.5/qdap/data/raj.act.1.rda |binary qdap-2.2.5/qdap/data/raj.act.1POS.rda |binary qdap-2.2.5/qdap/data/raj.act.2.rda |binary qdap-2.2.5/qdap/data/raj.act.3.rda |binary qdap-2.2.5/qdap/data/raj.act.4.rda |binary qdap-2.2.5/qdap/data/raj.act.5.rda |binary qdap-2.2.5/qdap/data/raj.demographics.rda |binary qdap-2.2.5/qdap/data/raj.rda |binary qdap-2.2.5/qdap/data/rajPOS.rda |binary qdap-2.2.5/qdap/data/rajSPLIT.rda |binary qdap-2.2.5/qdap/data/raw.time.span.rda |binary qdap-2.2.5/qdap/data/sample.time.span.rda |binary qdap-2.2.5/qdap/inst/CITATION | 4 qdap-2.2.5/qdap/inst/doc/cleaning_and_debugging.pdf |binary qdap-2.2.5/qdap/inst/doc/tm_package_compatibility.pdf |binary qdap-2.2.5/qdap/man/Animate.Rd | 2 qdap-2.2.5/qdap/man/Animate.character.Rd | 20 qdap-2.2.5/qdap/man/Animate.discourse_map.Rd | 18 qdap-2.2.5/qdap/man/Animate.formality.Rd | 42 qdap-2.2.5/qdap/man/Animate.gantt.Rd | 10 qdap-2.2.5/qdap/man/Animate.gantt_plot.Rd | 10 qdap-2.2.5/qdap/man/Animate.lexical_classification.Rd | 48 qdap-2.2.5/qdap/man/Animate.polarity.Rd | 34 qdap-2.2.5/qdap/man/DATA.Rd | 6 qdap-2.2.5/qdap/man/DATA.SPLIT.Rd | 8 qdap-2.2.5/qdap/man/DATA2.Rd | 6 qdap-2.2.5/qdap/man/Dissimilarity.Rd | 32 qdap-2.2.5/qdap/man/Filter.Rd | 26 qdap-2.2.5/qdap/man/NAer.Rd | 6 qdap-2.2.5/qdap/man/Network.Rd | 2 qdap-2.2.5/qdap/man/Network.formality.Rd | 12 qdap-2.2.5/qdap/man/Network.lexical_classification.Rd | 10 qdap-2.2.5/qdap/man/Network.polarity.Rd | 4 qdap-2.2.5/qdap/man/Readability.Rd | 62 qdap-2.2.5/qdap/man/Search.Rd | 50 qdap-2.2.5/qdap/man/Title.Rd | 2 qdap-2.2.5/qdap/man/Trim.Rd | 2 qdap-2.2.5/qdap/man/Word_Frequency_Matrix.Rd | 142 - qdap-2.2.5/qdap/man/addNetwork.Rd | 2 qdap-2.2.5/qdap/man/add_incomplete.Rd | 10 qdap-2.2.5/qdap/man/add_s.Rd | 4 qdap-2.2.5/qdap/man/adjacency_matrix.Rd | 12 qdap-2.2.5/qdap/man/all_words.Rd | 26 qdap-2.2.5/qdap/man/as.tdm.Rd | 130 - qdap-2.2.5/qdap/man/bag_o_words.Rd | 12 qdap-2.2.5/qdap/man/beg2char.Rd | 4 qdap-2.2.5/qdap/man/blank2NA.Rd | 4 qdap-2.2.5/qdap/man/bracketX.Rd | 74 qdap-2.2.5/qdap/man/build_qdap_vignette.Rd | 22 qdap-2.2.5/qdap/man/capitalizer.Rd | 10 qdap-2.2.5/qdap/man/chain.Rd | 15 qdap-2.2.5/qdap/man/check_spelling.Rd | 80 qdap-2.2.5/qdap/man/check_spelling_interactive.character.Rd | 34 qdap-2.2.5/qdap/man/check_spelling_interactive.check_spelling.Rd | 32 qdap-2.2.5/qdap/man/check_spelling_interactive.factor.Rd | 38 qdap-2.2.5/qdap/man/check_text.Rd | 22 qdap-2.2.5/qdap/man/chunker.Rd | 30 qdap-2.2.5/qdap/man/clean.Rd | 2 qdap-2.2.5/qdap/man/cm_2long.Rd | 16 qdap-2.2.5/qdap/man/cm_code.blank.Rd | 20 qdap-2.2.5/qdap/man/cm_code.combine.Rd | 14 qdap-2.2.5/qdap/man/cm_code.exclude.Rd | 22 qdap-2.2.5/qdap/man/cm_code.overlap.Rd | 16 qdap-2.2.5/qdap/man/cm_code.transform.Rd | 28 qdap-2.2.5/qdap/man/cm_combine.dummy.Rd | 12 qdap-2.2.5/qdap/man/cm_df.fill.Rd | 40 qdap-2.2.5/qdap/man/cm_df.temp.Rd | 22 qdap-2.2.5/qdap/man/cm_df.transcript.Rd | 26 qdap-2.2.5/qdap/man/cm_df2long.Rd | 20 qdap-2.2.5/qdap/man/cm_distance.Rd | 92 - qdap-2.2.5/qdap/man/cm_dummy2long.Rd | 4 qdap-2.2.5/qdap/man/cm_long2dummy.Rd | 8 qdap-2.2.5/qdap/man/cm_range.temp.Rd | 8 qdap-2.2.5/qdap/man/cm_range2long.Rd | 16 qdap-2.2.5/qdap/man/cm_time.temp.Rd | 14 qdap-2.2.5/qdap/man/cm_time2long.Rd | 18 qdap-2.2.5/qdap/man/colSplit.Rd | 6 qdap-2.2.5/qdap/man/colcomb2class.Rd | 20 qdap-2.2.5/qdap/man/colsplit2df.Rd | 24 qdap-2.2.5/qdap/man/comma_spacer.Rd | 6 qdap-2.2.5/qdap/man/common.Rd | 23 qdap-2.2.5/qdap/man/common.list.Rd | 6 qdap-2.2.5/qdap/man/condense.Rd | 6 qdap-2.2.5/qdap/man/counts.Rd | 4 qdap-2.2.5/qdap/man/counts.SMOG.Rd | 2 qdap-2.2.5/qdap/man/counts.automated_readability_index.Rd | 2 qdap-2.2.5/qdap/man/counts.character_table.Rd | 2 qdap-2.2.5/qdap/man/counts.coleman_liau.Rd | 2 qdap-2.2.5/qdap/man/counts.end_mark_by.Rd | 2 qdap-2.2.5/qdap/man/counts.flesch_kincaid.Rd | 2 qdap-2.2.5/qdap/man/counts.formality.Rd | 2 qdap-2.2.5/qdap/man/counts.fry.Rd | 2 qdap-2.2.5/qdap/man/counts.linsear_write.Rd | 2 qdap-2.2.5/qdap/man/counts.object_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/counts.polarity.Rd | 2 qdap-2.2.5/qdap/man/counts.pos.Rd | 2 qdap-2.2.5/qdap/man/counts.pos_by.Rd | 2 qdap-2.2.5/qdap/man/counts.pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/counts.question_type.Rd | 2 qdap-2.2.5/qdap/man/counts.subject_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/counts.termco.Rd | 2 qdap-2.2.5/qdap/man/counts.word_length.Rd | 2 qdap-2.2.5/qdap/man/counts.word_position.Rd | 2 qdap-2.2.5/qdap/man/counts.word_stats.Rd | 2 qdap-2.2.5/qdap/man/cumulative.Rd | 26 qdap-2.2.5/qdap/man/data_viewing.Rd | 16 qdap-2.2.5/qdap/man/dir_map.Rd | 28 qdap-2.2.5/qdap/man/discourse_map.Rd | 48 qdap-2.2.5/qdap/man/dispersion_plot.Rd | 82 qdap-2.2.5/qdap/man/dist_tab.Rd | 12 qdap-2.2.5/qdap/man/diversity.Rd | 12 qdap-2.2.5/qdap/man/duplicates.Rd | 2 qdap-2.2.5/qdap/man/end_inc.Rd | 8 qdap-2.2.5/qdap/man/end_mark.Rd | 46 qdap-2.2.5/qdap/man/env.syl.Rd | 2 qdap-2.2.5/qdap/man/exclude.Rd | 14 qdap-2.2.5/qdap/man/formality.Rd | 62 qdap-2.2.5/qdap/man/freq_terms.Rd | 16 qdap-2.2.5/qdap/man/gantt.Rd | 54 qdap-2.2.5/qdap/man/gantt_plot.Rd | 30 qdap-2.2.5/qdap/man/gantt_rep.Rd | 20 qdap-2.2.5/qdap/man/gantt_wrap.Rd | 52 qdap-2.2.5/qdap/man/gradient_cloud.Rd | 52 qdap-2.2.5/qdap/man/hamlet.Rd | 12 qdap-2.2.5/qdap/man/igraph_params.Rd | 6 qdap-2.2.5/qdap/man/imperative.Rd | 40 qdap-2.2.5/qdap/man/incomplete_replace.Rd | 8 qdap-2.2.5/qdap/man/inspect_text.Rd | 12 qdap-2.2.5/qdap/man/is.global.Rd | 6 qdap-2.2.5/qdap/man/justification.Rd | 14 qdap-2.2.5/qdap/man/key_merge.Rd | 10 qdap-2.2.5/qdap/man/kullback_leibler.Rd | 10 qdap-2.2.5/qdap/man/lexical_classification.Rd | 80 qdap-2.2.5/qdap/man/mraja1.Rd | 6 qdap-2.2.5/qdap/man/mraja1spl.Rd | 14 qdap-2.2.5/qdap/man/multicsv.Rd | 32 qdap-2.2.5/qdap/man/multigsub.Rd | 30 qdap-2.2.5/qdap/man/multiscale.Rd | 14 qdap-2.2.5/qdap/man/name2sex.Rd | 8 qdap-2.2.5/qdap/man/new_project.Rd | 54 qdap-2.2.5/qdap/man/ngrams.Rd | 14 qdap-2.2.5/qdap/man/object_pronoun_type.Rd | 20 qdap-2.2.5/qdap/man/outlier_detect.Rd | 14 qdap-2.2.5/qdap/man/outlier_labeler.Rd | 6 qdap-2.2.5/qdap/man/paste2.Rd | 28 qdap-2.2.5/qdap/man/phrase_net.Rd | 12 qdap-2.2.5/qdap/man/plot.Network.Rd | 2 qdap-2.2.5/qdap/man/plot.SMOG.Rd | 2 qdap-2.2.5/qdap/man/plot.animated_character.Rd | 2 qdap-2.2.5/qdap/man/plot.animated_discourse_map.Rd | 2 qdap-2.2.5/qdap/man/plot.animated_formality.Rd | 2 qdap-2.2.5/qdap/man/plot.animated_lexical_classification.Rd | 2 qdap-2.2.5/qdap/man/plot.animated_polarity.Rd | 2 qdap-2.2.5/qdap/man/plot.automated_readability_index.Rd | 2 qdap-2.2.5/qdap/man/plot.character_table.Rd | 14 qdap-2.2.5/qdap/man/plot.cm_distance.Rd | 16 qdap-2.2.5/qdap/man/plot.cmspans.Rd | 2 qdap-2.2.5/qdap/man/plot.coleman_liau.Rd | 2 qdap-2.2.5/qdap/man/plot.combo_syllable_sum.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_animated_formality.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_animated_lexical_classification.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_animated_polarity.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_combo_syllable_sum.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_end_mark.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_formality.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_lexical_classification.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_polarity.Rd | 2 qdap-2.2.5/qdap/man/plot.cumulative_syllable_freq.Rd | 2 qdap-2.2.5/qdap/man/plot.discourse_map.Rd | 2 qdap-2.2.5/qdap/man/plot.diversity.Rd | 2 qdap-2.2.5/qdap/man/plot.end_mark.Rd | 2 qdap-2.2.5/qdap/man/plot.end_mark_by.Rd | 4 qdap-2.2.5/qdap/man/plot.end_mark_by_count.Rd | 4 qdap-2.2.5/qdap/man/plot.end_mark_by_preprocessed.Rd | 2 qdap-2.2.5/qdap/man/plot.end_mark_by_proportion.Rd | 4 qdap-2.2.5/qdap/man/plot.end_mark_by_score.Rd | 4 qdap-2.2.5/qdap/man/plot.flesch_kincaid.Rd | 2 qdap-2.2.5/qdap/man/plot.formality.Rd | 20 qdap-2.2.5/qdap/man/plot.formality_scores.Rd | 2 qdap-2.2.5/qdap/man/plot.freq_terms.Rd | 2 qdap-2.2.5/qdap/man/plot.gantt.Rd | 4 qdap-2.2.5/qdap/man/plot.kullback_leibler.Rd | 2 qdap-2.2.5/qdap/man/plot.lexical.Rd | 2 qdap-2.2.5/qdap/man/plot.lexical_classification.Rd | 24 qdap-2.2.5/qdap/man/plot.lexical_classification_preprocessed.Rd | 2 qdap-2.2.5/qdap/man/plot.lexical_classification_score.Rd | 2 qdap-2.2.5/qdap/man/plot.linsear_write.Rd | 4 qdap-2.2.5/qdap/man/plot.linsear_write_count.Rd | 2 qdap-2.2.5/qdap/man/plot.linsear_write_scores.Rd | 4 qdap-2.2.5/qdap/man/plot.object_pronoun_type.Rd | 6 qdap-2.2.5/qdap/man/plot.polarity.Rd | 24 qdap-2.2.5/qdap/man/plot.polarity_count.Rd | 24 qdap-2.2.5/qdap/man/plot.polarity_score.Rd | 2 qdap-2.2.5/qdap/man/plot.pos.Rd | 2 qdap-2.2.5/qdap/man/plot.pos_by.Rd | 12 qdap-2.2.5/qdap/man/plot.pos_preprocessed.Rd | 2 qdap-2.2.5/qdap/man/plot.pronoun_type.Rd | 6 qdap-2.2.5/qdap/man/plot.question_type.Rd | 12 qdap-2.2.5/qdap/man/plot.question_type_preprocessed.Rd | 2 qdap-2.2.5/qdap/man/plot.readability_count.Rd | 2 qdap-2.2.5/qdap/man/plot.readability_score.Rd | 12 qdap-2.2.5/qdap/man/plot.rmgantt.Rd | 4 qdap-2.2.5/qdap/man/plot.sent_split.Rd | 6 qdap-2.2.5/qdap/man/plot.subject_pronoun_type.Rd | 6 qdap-2.2.5/qdap/man/plot.sum_cmspans.Rd | 16 qdap-2.2.5/qdap/man/plot.sums_gantt.Rd | 4 qdap-2.2.5/qdap/man/plot.syllable_freq.Rd | 2 qdap-2.2.5/qdap/man/plot.table_count.Rd | 4 qdap-2.2.5/qdap/man/plot.table_proportion.Rd | 4 qdap-2.2.5/qdap/man/plot.table_score.Rd | 4 qdap-2.2.5/qdap/man/plot.termco.Rd | 12 qdap-2.2.5/qdap/man/plot.type_token_ratio.Rd | 2 qdap-2.2.5/qdap/man/plot.weighted_wfm.Rd | 6 qdap-2.2.5/qdap/man/plot.wfdf.Rd | 2 qdap-2.2.5/qdap/man/plot.wfm.Rd | 6 qdap-2.2.5/qdap/man/plot.word_cor.Rd | 12 qdap-2.2.5/qdap/man/plot.word_length.Rd | 12 qdap-2.2.5/qdap/man/plot.word_position.Rd | 8 qdap-2.2.5/qdap/man/plot.word_proximity.Rd | 6 qdap-2.2.5/qdap/man/plot.word_stats.Rd | 6 qdap-2.2.5/qdap/man/plot.word_stats_counts.Rd | 2 qdap-2.2.5/qdap/man/polarity.Rd | 140 - qdap-2.2.5/qdap/man/pos.Rd | 108 - qdap-2.2.5/qdap/man/potential_NA.Rd | 6 qdap-2.2.5/qdap/man/power.Rd | 8 qdap-2.2.5/qdap/man/preprocessed.Rd | 4 qdap-2.2.5/qdap/man/preprocessed.check_spelling_interactive.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.end_mark_by.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.formality.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.lexical_classification.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.object_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.pos.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.pos_by.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.question_type.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.subject_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/preprocessed.word_position.Rd | 2 qdap-2.2.5/qdap/man/pres_debate_raw2012.Rd | 6 qdap-2.2.5/qdap/man/pres_debates2012.Rd | 6 qdap-2.2.5/qdap/man/print.Dissimilarity.Rd | 2 qdap-2.2.5/qdap/man/print.Network.Rd | 10 qdap-2.2.5/qdap/man/print.SMOG.Rd | 2 qdap-2.2.5/qdap/man/print.adjacency_matrix.Rd | 2 qdap-2.2.5/qdap/man/print.all_words.Rd | 2 qdap-2.2.5/qdap/man/print.animated_character.Rd | 2 qdap-2.2.5/qdap/man/print.animated_discourse_map.Rd | 2 qdap-2.2.5/qdap/man/print.animated_formality.Rd | 6 qdap-2.2.5/qdap/man/print.animated_lexical_classification.Rd | 6 qdap-2.2.5/qdap/man/print.animated_polarity.Rd | 6 qdap-2.2.5/qdap/man/print.automated_readability_index.Rd | 2 qdap-2.2.5/qdap/man/print.boolean_qdap.Rd | 2 qdap-2.2.5/qdap/man/print.character_table.Rd | 12 qdap-2.2.5/qdap/man/print.check_spelling.Rd | 2 qdap-2.2.5/qdap/man/print.check_spelling_interactive.Rd | 2 qdap-2.2.5/qdap/man/print.check_text.Rd | 4 qdap-2.2.5/qdap/man/print.cm_distance.Rd | 14 qdap-2.2.5/qdap/man/print.coleman_liau.Rd | 2 qdap-2.2.5/qdap/man/print.colsplit2df.Rd | 2 qdap-2.2.5/qdap/man/print.combo_syllable_sum.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_animated_formality.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_animated_lexical_classification.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_animated_polarity.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_combo_syllable_sum.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_end_mark.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_formality.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_lexical_classification.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_polarity.Rd | 2 qdap-2.2.5/qdap/man/print.cumulative_syllable_freq.Rd | 2 qdap-2.2.5/qdap/man/print.discourse_map.Rd | 2 qdap-2.2.5/qdap/man/print.diversity.Rd | 2 qdap-2.2.5/qdap/man/print.end_mark.Rd | 2 qdap-2.2.5/qdap/man/print.end_mark_by.Rd | 2 qdap-2.2.5/qdap/man/print.end_mark_by_preprocessed.Rd | 2 qdap-2.2.5/qdap/man/print.flesch_kincaid.Rd | 2 qdap-2.2.5/qdap/man/print.formality.Rd | 2 qdap-2.2.5/qdap/man/print.formality_scores.Rd | 2 qdap-2.2.5/qdap/man/print.fry.Rd | 8 qdap-2.2.5/qdap/man/print.inspect_text.Rd | 4 qdap-2.2.5/qdap/man/print.kullback_leibler.Rd | 2 qdap-2.2.5/qdap/man/print.lexical_classification.Rd | 4 qdap-2.2.5/qdap/man/print.lexical_classification_by.Rd | 6 qdap-2.2.5/qdap/man/print.lexical_classification_preprocessed.Rd | 2 qdap-2.2.5/qdap/man/print.lexical_classification_score.Rd | 2 qdap-2.2.5/qdap/man/print.linsear_write.Rd | 2 qdap-2.2.5/qdap/man/print.linsear_write_count.Rd | 2 qdap-2.2.5/qdap/man/print.linsear_write_scores.Rd | 2 qdap-2.2.5/qdap/man/print.ngrams.Rd | 2 qdap-2.2.5/qdap/man/print.object_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/print.phrase_net.Rd | 2 qdap-2.2.5/qdap/man/print.polarity.Rd | 2 qdap-2.2.5/qdap/man/print.polarity_count.Rd | 2 qdap-2.2.5/qdap/man/print.polarity_score.Rd | 2 qdap-2.2.5/qdap/man/print.polysyllable_sum.Rd | 2 qdap-2.2.5/qdap/man/print.pos.Rd | 10 qdap-2.2.5/qdap/man/print.pos_by.Rd | 10 qdap-2.2.5/qdap/man/print.pos_preprocessed.Rd | 2 qdap-2.2.5/qdap/man/print.pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/print.qdapProj.Rd | 2 qdap-2.2.5/qdap/man/print.qdap_context.Rd | 12 qdap-2.2.5/qdap/man/print.question_type.Rd | 2 qdap-2.2.5/qdap/man/print.question_type_preprocessed.Rd | 2 qdap-2.2.5/qdap/man/print.readability_count.Rd | 2 qdap-2.2.5/qdap/man/print.readability_score.Rd | 2 qdap-2.2.5/qdap/man/print.sent_split.Rd | 2 qdap-2.2.5/qdap/man/print.sub_holder.Rd | 2 qdap-2.2.5/qdap/man/print.subject_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/print.sum_cmspans.Rd | 4 qdap-2.2.5/qdap/man/print.sums_gantt.Rd | 2 qdap-2.2.5/qdap/man/print.syllable_sum.Rd | 2 qdap-2.2.5/qdap/man/print.table_count.Rd | 2 qdap-2.2.5/qdap/man/print.table_proportion.Rd | 2 qdap-2.2.5/qdap/man/print.table_score.Rd | 2 qdap-2.2.5/qdap/man/print.termco.Rd | 10 qdap-2.2.5/qdap/man/print.trunc.Rd | 2 qdap-2.2.5/qdap/man/print.type_token_ratio.Rd | 2 qdap-2.2.5/qdap/man/print.wfm.Rd | 2 qdap-2.2.5/qdap/man/print.wfm_summary.Rd | 2 qdap-2.2.5/qdap/man/print.which_misspelled.Rd | 2 qdap-2.2.5/qdap/man/print.word_associate.Rd | 2 qdap-2.2.5/qdap/man/print.word_cor.Rd | 2 qdap-2.2.5/qdap/man/print.word_length.Rd | 2 qdap-2.2.5/qdap/man/print.word_list.Rd | 2 qdap-2.2.5/qdap/man/print.word_position.Rd | 2 qdap-2.2.5/qdap/man/print.word_proximity.Rd | 2 qdap-2.2.5/qdap/man/print.word_stats.Rd | 4 qdap-2.2.5/qdap/man/print.word_stats_counts.Rd | 2 qdap-2.2.5/qdap/man/pronoun_type.Rd | 32 qdap-2.2.5/qdap/man/prop.Rd | 12 qdap-2.2.5/qdap/man/proportions.Rd | 4 qdap-2.2.5/qdap/man/proportions.character_table.Rd | 2 qdap-2.2.5/qdap/man/proportions.end_mark_by.Rd | 2 qdap-2.2.5/qdap/man/proportions.formality.Rd | 2 qdap-2.2.5/qdap/man/proportions.object_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/proportions.pos.Rd | 2 qdap-2.2.5/qdap/man/proportions.pos_by.Rd | 2 qdap-2.2.5/qdap/man/proportions.pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/proportions.question_type.Rd | 2 qdap-2.2.5/qdap/man/proportions.subject_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/proportions.termco.Rd | 2 qdap-2.2.5/qdap/man/proportions.word_length.Rd | 2 qdap-2.2.5/qdap/man/proportions.word_position.Rd | 2 qdap-2.2.5/qdap/man/qcombine.Rd | 10 qdap-2.2.5/qdap/man/qcv.Rd | 18 qdap-2.2.5/qdap/man/qdap.Rd | 16 qdap-2.2.5/qdap/man/qdap_df.Rd | 12 qdap-2.2.5/qdap/man/qheat.Rd | 40 qdap-2.2.5/qdap/man/qprep.Rd | 38 qdap-2.2.5/qdap/man/qtheme.Rd | 16 qdap-2.2.5/qdap/man/question_type.Rd | 70 qdap-2.2.5/qdap/man/raj.Rd | 8 qdap-2.2.5/qdap/man/raj.act.1.Rd | 4 qdap-2.2.5/qdap/man/raj.act.1POS.Rd | 38 qdap-2.2.5/qdap/man/raj.act.2.Rd | 4 qdap-2.2.5/qdap/man/raj.act.3.Rd | 4 qdap-2.2.5/qdap/man/raj.act.4.Rd | 4 qdap-2.2.5/qdap/man/raj.act.5.Rd | 4 qdap-2.2.5/qdap/man/raj.demographics.Rd | 8 qdap-2.2.5/qdap/man/rajPOS.Rd | 16 qdap-2.2.5/qdap/man/rajSPLIT.Rd | 10 qdap-2.2.5/qdap/man/random_data.Rd | 14 qdap-2.2.5/qdap/man/rank_freq_plot.Rd | 50 qdap-2.2.5/qdap/man/raw.time.span.Rd | 2 qdap-2.2.5/qdap/man/read.transcript.Rd | 64 qdap-2.2.5/qdap/man/replace_abbreviation.Rd | 12 qdap-2.2.5/qdap/man/replace_contraction.Rd | 16 qdap-2.2.5/qdap/man/replace_number.Rd | 12 qdap-2.2.5/qdap/man/replace_ordinal.Rd | 10 qdap-2.2.5/qdap/man/replace_symbol.Rd | 16 qdap-2.2.5/qdap/man/replacer.Rd | 4 qdap-2.2.5/qdap/man/rm_row.Rd | 20 qdap-2.2.5/qdap/man/rm_stopwords.Rd | 36 qdap-2.2.5/qdap/man/sample.time.span.Rd | 6 qdap-2.2.5/qdap/man/scores.Rd | 4 qdap-2.2.5/qdap/man/scores.SMOG.Rd | 2 qdap-2.2.5/qdap/man/scores.automated_readability_index.Rd | 2 qdap-2.2.5/qdap/man/scores.character_table.Rd | 2 qdap-2.2.5/qdap/man/scores.coleman_liau.Rd | 2 qdap-2.2.5/qdap/man/scores.end_mark_by.Rd | 2 qdap-2.2.5/qdap/man/scores.flesch_kincaid.Rd | 2 qdap-2.2.5/qdap/man/scores.formality.Rd | 2 qdap-2.2.5/qdap/man/scores.fry.Rd | 2 qdap-2.2.5/qdap/man/scores.lexical_classification.Rd | 2 qdap-2.2.5/qdap/man/scores.linsear_write.Rd | 2 qdap-2.2.5/qdap/man/scores.object_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/scores.polarity.Rd | 2 qdap-2.2.5/qdap/man/scores.pos_by.Rd | 2 qdap-2.2.5/qdap/man/scores.pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/scores.question_type.Rd | 2 qdap-2.2.5/qdap/man/scores.subject_pronoun_type.Rd | 2 qdap-2.2.5/qdap/man/scores.termco.Rd | 2 qdap-2.2.5/qdap/man/scores.word_length.Rd | 2 qdap-2.2.5/qdap/man/scores.word_position.Rd | 2 qdap-2.2.5/qdap/man/scores.word_stats.Rd | 2 qdap-2.2.5/qdap/man/scrubber.Rd | 13 qdap-2.2.5/qdap/man/sentSplit.Rd | 54 qdap-2.2.5/qdap/man/space_fill.Rd | 18 qdap-2.2.5/qdap/man/spaste.Rd | 6 qdap-2.2.5/qdap/man/speakerSplit.Rd | 12 qdap-2.2.5/qdap/man/stemmer.Rd | 22 qdap-2.2.5/qdap/man/strWrap.Rd | 12 qdap-2.2.5/qdap/man/strip.Rd | 16 qdap-2.2.5/qdap/man/subject_pronoun_type.Rd | 18 qdap-2.2.5/qdap/man/summary.cmspans.Rd | 30 qdap-2.2.5/qdap/man/summary.wfdf.Rd | 10 qdap-2.2.5/qdap/man/summary.wfm.Rd | 10 qdap-2.2.5/qdap/man/syllabication.Rd | 32 qdap-2.2.5/qdap/man/synonyms.Rd | 28 qdap-2.2.5/qdap/man/t.DocumentTermMatrix.Rd | 2 qdap-2.2.5/qdap/man/t.TermDocumentMatrix.Rd | 2 qdap-2.2.5/qdap/man/termco.Rd | 128 - qdap-2.2.5/qdap/man/termco_c.Rd | 32 qdap-2.2.5/qdap/man/tot_plot.Rd | 46 qdap-2.2.5/qdap/man/trans_cloud.Rd | 72 qdap-2.2.5/qdap/man/trans_context.Rd | 12 qdap-2.2.5/qdap/man/trans_venn.Rd | 38 qdap-2.2.5/qdap/man/type_token_ratio.Rd | 8 qdap-2.2.5/qdap/man/unique_by.Rd | 6 qdap-2.2.5/qdap/man/visual.Rd | 4 qdap-2.2.5/qdap/man/visual.discourse_map.Rd | 2 qdap-2.2.5/qdap/man/weight.Rd | 16 qdap-2.2.5/qdap/man/word_associate.Rd | 148 - qdap-2.2.5/qdap/man/word_cor.Rd | 26 qdap-2.2.5/qdap/man/word_count.Rd | 40 qdap-2.2.5/qdap/man/word_diff_list.Rd | 34 qdap-2.2.5/qdap/man/word_length.Rd | 32 qdap-2.2.5/qdap/man/word_list.Rd | 30 qdap-2.2.5/qdap/man/word_network_plot.Rd | 60 qdap-2.2.5/qdap/man/word_position.Rd | 88 qdap-2.2.5/qdap/man/word_proximity.Rd | 48 qdap-2.2.5/qdap/man/word_stats.Rd | 60 451 files changed, 3267 insertions(+), 3268 deletions(-)
Title: Network-Based Gene Set Analysis
Description: Carry out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.
Author: Ali Shojaie and Jing Ma
Maintainer: Jing Ma <jinma@upenn.edu>
Diff between netgsa versions 2.0 dated 2015-03-08 and 3.0 dated 2016-06-16
netgsa-2.0/netgsa/R/call.netGSA.R |only netgsa-2.0/netgsa/R/covsel.R |only netgsa-2.0/netgsa/R/cv.covsel.R |only netgsa-2.0/netgsa/R/profile.newton.sg.R |only netgsa-2.0/netgsa/R/profileVarEst.R |only netgsa-2.0/netgsa/data/netgsaex.rda |only netgsa-2.0/netgsa/man/covsel.Rd |only netgsa-2.0/netgsa/man/cv.covsel.Rd |only netgsa-2.0/netgsa/man/netgsaex.Rd |only netgsa-3.0/netgsa/DESCRIPTION | 14 - netgsa-3.0/netgsa/MD5 | 60 ++++--- netgsa-3.0/netgsa/NAMESPACE | 14 + netgsa-3.0/netgsa/R/NetGSA.R | 195 +++++++++++------------ netgsa-3.0/netgsa/R/adj2inf.R | 52 +++--- netgsa-3.0/netgsa/R/approxVarEst.R | 174 ++++++++++---------- netgsa-3.0/netgsa/R/bic.netEst.undir.R |only netgsa-3.0/netgsa/R/call.netgsa.R |only netgsa-3.0/netgsa/R/edgelist2adj.R | 49 +++-- netgsa-3.0/netgsa/R/get.contrast.R |only netgsa-3.0/netgsa/R/glmnet.soft.R |only netgsa-3.0/netgsa/R/graphlaplacian.R | 26 +-- netgsa-3.0/netgsa/R/matTr.R |only netgsa-3.0/netgsa/R/netEst.dir.R |only netgsa-3.0/netgsa/R/netEst.undir.R |only netgsa-3.0/netgsa/R/netgsa-internal.R |only netgsa-3.0/netgsa/R/netgsa.ftest.R |only netgsa-3.0/netgsa/R/netgsa.ttest.R |only netgsa-3.0/netgsa/R/newton.R | 60 +++---- netgsa-3.0/netgsa/R/normalizeAdj.R | 56 +++--- netgsa-3.0/netgsa/R/profile.newton.se.R | 249 +++++++++++++++--------------- netgsa-3.0/netgsa/R/zeroInd.R | 84 +++++----- netgsa-3.0/netgsa/data/edgelist.rda |binary netgsa-3.0/netgsa/data/netgsaex2.rda |only netgsa-3.0/netgsa/data/netgsaex3.rda |only netgsa-3.0/netgsa/data/netgsaexDAG.rda |only netgsa-3.0/netgsa/data/nonedgelist.rda |binary netgsa-3.0/netgsa/man/NetGSA.Rd | 150 ++++++++---------- netgsa-3.0/netgsa/man/bic.netEst.undir.Rd |only netgsa-3.0/netgsa/man/edgelist2adj.Rd | 8 netgsa-3.0/netgsa/man/netEst.dir.Rd |only netgsa-3.0/netgsa/man/netEst.undir.Rd |only netgsa-3.0/netgsa/man/netgsa-package.Rd | 10 - netgsa-3.0/netgsa/man/netgsaex2.Rd |only netgsa-3.0/netgsa/man/netgsaex3.Rd |only netgsa-3.0/netgsa/man/netgsaexDAG.Rd |only 45 files changed, 610 insertions(+), 591 deletions(-)
Title: Multiplicative Competitive Interaction (MCI) Model
Description: The Multiplicative Competitive Interaction (MCI) Model by Nakanishi & Cooper (1974) <DOI:10.2307/3151146> is an econometric model for analyzing market shares and/or market areas. The functions in this package include fitting the MCI model, MCI shares simulations, the log-centering transformation of MCI datasets, creation of interaction matrices and tools for data preparation.
Author: Thomas Wieland
Maintainer: Thomas Wieland <thomas.wieland.geo@googlemail.com>
Diff between MCI versions 1.0.2 dated 2016-05-31 and 1.1.0 dated 2016-06-16
DESCRIPTION | 10 +++++----- MD5 | 42 +++++++++++++++++++++++++----------------- R/geom.R | 7 +++++-- R/ijmatrix.create.R | 16 +--------------- R/ijmatrix.shares.R | 4 ---- R/mci.fit.R | 3 --- R/mci.shares.R |only R/mci.transmat.R | 11 ----------- R/mci.transvar.R | 12 +++++++----- R/shares.total.R |only R/var.asdummy.R | 10 +--------- R/var.check.R | 24 +++--------------------- R/var.correct.R | 6 +----- R/var.zetas.R | 1 - data/Freiburg1.rda |only data/Freiburg2.rda |only man/Freiburg1.Rd |only man/Freiburg2.Rd |only man/MCI-package.Rd | 3 +-- man/ce.Rd | 2 ++ man/grocery1.Rd | 1 + man/grocery2.Rd | 4 +++- man/mci.fit.Rd | 2 +- man/mci.shares.Rd |only man/shares.total.Rd |only man/var.asdummy.Rd | 2 +- 26 files changed, 57 insertions(+), 103 deletions(-)
Title: Gaussian Mixture Models (GMM)
Description: Multimodal distributions can be modelled as a mixture of components. The model is derived using the Pareto Density Estimation (PDE) for an estimation of the pdf. PDE has been designed in particular to identify groups/classes in a dataset. Precise limits for the classes can be calculated using the theorem of Bayes. Verification of the model is possible by QQ plot, Chi-squared test and Kolmogorov-Smirnov test.
Author: Michael Thrun, Onno Hansen-Goos, Rabea Griese, Catharina Lippmann, Jorn Lotsch, Alfred Ultsch
Maintainer: Michael Thrun <mthrun@mathematik.uni-marburg.de>
Diff between AdaptGauss versions 1.2.2 dated 2016-06-15 and 1.2.3 dated 2016-06-16
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NAMESPACE | 3 +-- R/KStestMixtures.R | 48 ++++++++++++++++++++++++------------------------ 4 files changed, 33 insertions(+), 33 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with
this package. Among other things, it is possible to create and manipulate multivariate network
data with different formats, and there are effective ways available to treat multiple networks
with routines that combine algebraic systems like the partially ordered semigroup or the
semiring structure together with the relational bundles occurring in different types of
multivariate network data sets. As well an algebraic approach for two-mode networks is made
through Galois derivations between families of the pair of subsets.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 1.9 dated 2016-04-29 and 1.9.3 dated 2016-06-16
DESCRIPTION | 6 +-- MD5 | 30 +++++++++--------- R/bundles.R | 24 +++++++------- R/comps.R | 31 ++++++++++-------- R/diagram.R | 12 +++++-- R/galois.R | 72 ++++++++++++++++++++++++++++++++++++------- R/mnplx.R |only R/rel.sys.R | 77 +++++++++++++++++++++++++++++------------------ R/zbind.R | 9 ++++- inst/CHANGELOG | 22 ++++++++++++- man/bundles.Rd | 6 +-- man/diagram.Rd | 10 ++++-- man/mnplx.Rd |only man/multiplex-package.Rd | 4 +- man/rbox.Rd | 5 +-- man/rel.sys.Rd | 7 ++-- man/zbind.Rd | 2 - 17 files changed, 214 insertions(+), 103 deletions(-)
Title: A Flexible Microarray Data Simulation Model
Description: This function allows to generate two biological conditions synthetic
microarray dataset which has similar behavior to those currently
observed with common platforms. User provides a subset of parameters.
Available default parameters settings can be modified.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between madsim versions 1.1 dated 2013-04-18 and 1.2 dated 2016-06-16
DESCRIPTION | 17 ++++------ MD5 | 12 +++---- NAMESPACE | 4 ++ R/madsim.R | 52 ++++++++++++++++++-------------- man/madsim-package.Rd | 4 +- man/madsim.Rd | 81 +++++++++++++++++++++++++++----------------------- man/madsim_test.Rd | 37 ++++++++++------------ 7 files changed, 111 insertions(+), 96 deletions(-)
Title: Google Analytics API into R
Description: R library for interacting with the Google Analytics
Reporting API v3 and v4.
Author: Mark Edmondson [aut, cre],
Artem Klevtsov [ctb],
Johann deBoer [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAnalyticsR versions 0.2.0 dated 2016-06-14 and 0.2.1 dated 2016-06-16
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 5 ++ R/ga_v4_get.R | 70 ++++++++++++++++++++++++++--------------- R/parse_functions.R | 2 - inst/doc/googleAnalyticsR.html | 4 +- 6 files changed, 61 insertions(+), 36 deletions(-)
More information about googleAnalyticsR at CRAN
Permanent link
Title: Generate Random Data Sets
Description: Generates random data sets including: data.frames, lists,
and vectors.
Author: Tyler Rinker [aut, cre],
Josh O'Brien [ctb],
Ananda Mahto [ctb],
Matthew Sigal [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between wakefield versions 0.2.1 dated 2016-01-04 and 0.3.0 dated 2016-06-16
DESCRIPTION | 8 - MD5 | 32 ++-- NEWS | 4 R/likert.R | 6 R/political.R | 2 R/r_insert.R | 2 README.md | 239 ++++++++++++++++++------------------- data/animal_list.rda |binary data/grady_augmented.rda |binary data/languages.rda |binary data/name_neutral.rda |binary data/presidential_debates_2012.rda |binary data/state_populations.rda |binary inst/CITATION | 6 man/likert.Rd | 6 man/political.Rd | 4 man/r_insert.Rd | 2 17 files changed, 160 insertions(+), 151 deletions(-)
Title: Statistical Tools for Topological Data Analysis
Description: Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries GUDHI, Dionysus, and PHAT.
Author: Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, Vincent Rouvreau. The included GUDHI is authored by Clement Maria, Dionysus by Dmitriy Morozov, and PHAT by Ulrich Bauer, Michael Kerber, and Jan Reininghaus.
Maintainer: Jisu Kim <jisuk1@andrew.cmu.edu>
Diff between TDA versions 1.4.1 dated 2015-09-18 and 1.5 dated 2016-06-16
TDA-1.4.1/TDA/src/CGAL/Filtered_kernel_d.h |only TDA-1.4.1/TDA/src/CGAL/IO/Custom_zoom_layer.h |only TDA-1.4.1/TDA/src/CGAL/IO/Navigation_layer.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_help_window.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Alpha_shape_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Apollonius_site_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Conic_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Conic_arc_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Constrained_triangulation_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Delaunay_triangulation_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Hyperbola_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Linear_object_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Min_ellipse_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Nef_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Nef_3.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Nef_S2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_OpenGL.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Optimisation_circle_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Optimisation_ellipse_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Polygon_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Polyline_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Regular_triangulation_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_Triangulation_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_circular_arc_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_circular_arc_endpoint_2.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_focus.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_get_circle.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_get_iso_rectangle.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_get_line.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_get_point.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_get_polygon.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_get_segment.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_get_simple_polygon.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_handtool.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_history.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_layer.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_rotation_layer.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_show_mouse_coordinates.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_standard_toolbar.h |only TDA-1.4.1/TDA/src/CGAL/IO/Qt_widget_zoomrect.h |only TDA-1.4.1/TDA/src/CGAL/IO/pixmaps |only TDA-1.4.1/TDA/src/CGAL/Kernel_d/Cartesian_converter_d.h |only TDA-1.4.1/TDA/src/CGAL/Kernel_d/Interval_linear_algebra.h |only TDA-1.4.1/TDA/src/CGAL/Kernel_d/interface_macros_d.h |only TDA-1.4.1/TDA/src/CGAL/Referenced_argument.h |only TDA-1.4.1/TDA/src/CGAL/Regular_triangulation_filtered_traits_3.h |only TDA-1.4.1/TDA/src/CGAL/auto_link/CGALQt3.h |only TDA-1.4.1/TDA/src/CGAL/auto_link/Qt4.h |only TDA-1.4.1/TDA/src/CGAL/export/Qt4.h |only TDA-1.4.1/TDA/src/boost/multi_index |only TDA-1.5/TDA/DESCRIPTION | 11 TDA-1.5/TDA/MD5 | 642 +++--- TDA-1.5/TDA/NAMESPACE | 62 TDA-1.5/TDA/NEWS | 23 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TDA-1.5/TDA/src/CGAL/Cartesian/Line_3.h | 14 TDA-1.5/TDA/src/CGAL/Cartesian/Plane_3.h | 8 TDA-1.5/TDA/src/CGAL/Cartesian/Point_2.h | 2 TDA-1.5/TDA/src/CGAL/Cartesian/Point_3.h | 2 TDA-1.5/TDA/src/CGAL/Cartesian/Ray_2.h | 4 TDA-1.5/TDA/src/CGAL/Cartesian/Ray_3.h | 4 TDA-1.5/TDA/src/CGAL/Cartesian/Segment_2.h | 4 TDA-1.5/TDA/src/CGAL/Cartesian/Segment_3.h | 4 TDA-1.5/TDA/src/CGAL/Cartesian/Sphere_3.h | 12 TDA-1.5/TDA/src/CGAL/Cartesian/Tetrahedron_3.h | 8 TDA-1.5/TDA/src/CGAL/Cartesian/Triangle_2.h | 6 TDA-1.5/TDA/src/CGAL/Cartesian/Triangle_3.h | 6 TDA-1.5/TDA/src/CGAL/Cartesian/Vector_2.h | 8 TDA-1.5/TDA/src/CGAL/Cartesian/Vector_3.h | 12 TDA-1.5/TDA/src/CGAL/Circle_2.h | 4 TDA-1.5/TDA/src/CGAL/Circulator_identity.h | 1 TDA-1.5/TDA/src/CGAL/Circulator_on_node.h | 1 TDA-1.5/TDA/src/CGAL/Coercion_traits.h | 2 TDA-1.5/TDA/src/CGAL/Compact_container.h | 57 TDA-1.5/TDA/src/CGAL/Concurrent_compact_container.h | 53 TDA-1.5/TDA/src/CGAL/Delaunay_triangulation.h |only TDA-1.5/TDA/src/CGAL/Delaunay_triangulation_3.h | 262 ++ TDA-1.5/TDA/src/CGAL/Direction_2.h | 8 TDA-1.5/TDA/src/CGAL/Direction_3.h | 8 TDA-1.5/TDA/src/CGAL/Epick_d.h |only TDA-1.5/TDA/src/CGAL/Exact_predicates_exact_constructions_kernel.h | 7 TDA-1.5/TDA/src/CGAL/Exact_predicates_inexact_constructions_kernel.h | 6 TDA-1.5/TDA/src/CGAL/FPU.h | 43 TDA-1.5/TDA/src/CGAL/Filtered_predicate.h | 8 TDA-1.5/TDA/src/CGAL/GMP |only TDA-1.5/TDA/src/CGAL/GMP_arithmetic_kernel.h |only TDA-1.5/TDA/src/CGAL/Gmp_coercion_traits.h |only TDA-1.5/TDA/src/CGAL/Gmpq.h |only TDA-1.5/TDA/src/CGAL/Gmpz.h |only TDA-1.5/TDA/src/CGAL/Gmpzf.h |only TDA-1.5/TDA/src/CGAL/Handle_for.h | 4 TDA-1.5/TDA/src/CGAL/Hilbert_sort_base.h | 9 TDA-1.5/TDA/src/CGAL/Hilbert_sort_middle_2.h | 23 TDA-1.5/TDA/src/CGAL/Homogeneous/Aff_transformationH3.h | 1 TDA-1.5/TDA/src/CGAL/Homogeneous/DirectionH2.h | 8 TDA-1.5/TDA/src/CGAL/Homogeneous/DirectionH3.h | 18 TDA-1.5/TDA/src/CGAL/Homogeneous/Iso_cuboidH3.h | 4 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TDA-1.5/TDA/src/CGAL/IO/File_writer_OFF.h | 5 TDA-1.5/TDA/src/CGAL/IO/File_writer_VRML_2.h | 5 TDA-1.5/TDA/src/CGAL/IO/File_writer_inventor.h | 5 TDA-1.5/TDA/src/CGAL/IO/File_writer_wavefront.h | 5 TDA-1.5/TDA/src/CGAL/IO/Geomview_stream.h | 9 TDA-1.5/TDA/src/CGAL/IO/Geomview_stream_impl.h |only TDA-1.5/TDA/src/CGAL/IO/io.h | 253 ++ TDA-1.5/TDA/src/CGAL/IO/io_impl.h |only TDA-1.5/TDA/src/CGAL/IO/read_off_points.h | 27 TDA-1.5/TDA/src/CGAL/IO/read_xyz_points.h | 27 TDA-1.5/TDA/src/CGAL/IO/write_off_points.h | 14 TDA-1.5/TDA/src/CGAL/IO/write_xyz_points.h | 14 TDA-1.5/TDA/src/CGAL/In_place_list.h | 57 TDA-1.5/TDA/src/CGAL/Intersection_traits.h | 2 TDA-1.5/TDA/src/CGAL/Intersections_3/intersection_3_1_impl.h | 21 TDA-1.5/TDA/src/CGAL/Iso_cuboid_3.h | 2 TDA-1.5/TDA/src/CGAL/Iso_rectangle_2.h | 2 TDA-1.5/TDA/src/CGAL/Iso_rectangle_2_Iso_rectangle_2_intersection.h | 2 TDA-1.5/TDA/src/CGAL/Kernel_checker.h | 9 TDA-1.5/TDA/src/CGAL/Kernel_d/Matrix__.h | 6 TDA-1.5/TDA/src/CGAL/Kernel_d/Pair_d.h 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TDA-1.5/TDA/src/CGAL/Ray_3.h | 6 TDA-1.5/TDA/src/CGAL/Regular_triangulation_3.h | 320 ++- TDA-1.5/TDA/src/CGAL/Segment_2.h | 16 TDA-1.5/TDA/src/CGAL/Segment_3.h | 8 TDA-1.5/TDA/src/CGAL/Spatial_sort_traits_adapter_d.h |only TDA-1.5/TDA/src/CGAL/Sphere_3.h | 10 TDA-1.5/TDA/src/CGAL/Sqrt_extension/convert_to_bfi.h | 1 TDA-1.5/TDA/src/CGAL/TDS_full_cell_default_storage_policy.h |only TDA-1.5/TDA/src/CGAL/TDS_full_cell_mirror_storage_policy.h |only TDA-1.5/TDA/src/CGAL/Tetrahedron_3.h | 2 TDA-1.5/TDA/src/CGAL/Triangle_2.h | 2 TDA-1.5/TDA/src/CGAL/Triangle_2_Iso_rectangle_2_intersection.h | 9 TDA-1.5/TDA/src/CGAL/Triangle_3.h | 2 TDA-1.5/TDA/src/CGAL/Triangle_3_Triangle_3_intersection.h | 2 TDA-1.5/TDA/src/CGAL/Triangulation.h |only TDA-1.5/TDA/src/CGAL/Triangulation_3.h | 27 TDA-1.5/TDA/src/CGAL/Triangulation_data_structure.h |only TDA-1.5/TDA/src/CGAL/Triangulation_data_structure_3.h | 10 TDA-1.5/TDA/src/CGAL/Triangulation_ds_cell_base_3.h | 1 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TDA-1.5/TDA/src/CGAL/determinant_of_vectors.h |only TDA-1.5/TDA/src/CGAL/export/CORE.h | 4 TDA-1.5/TDA/src/CGAL/export/helpers.h | 36 TDA-1.5/TDA/src/CGAL/gmp.h |only TDA-1.5/TDA/src/CGAL/gmpxx.h |only TDA-1.5/TDA/src/CGAL/gmpxx_coercion_traits.h |only TDA-1.5/TDA/src/CGAL/hilbert_sort.h | 18 TDA-1.5/TDA/src/CGAL/internal/Combination_enumerator.h |only TDA-1.5/TDA/src/CGAL/internal/Lazy_alpha_nt_3.h | 5 TDA-1.5/TDA/src/CGAL/internal/Projection_traits_3.h | 94 - TDA-1.5/TDA/src/CGAL/internal/Static_filters/Compare_squared_radius_3.h | 4 TDA-1.5/TDA/src/CGAL/internal/Static_filters/Compare_weighted_squared_radius_3.h | 6 TDA-1.5/TDA/src/CGAL/internal/Static_filters/Equal_3.h | 25 TDA-1.5/TDA/src/CGAL/internal/Static_filters/Power_test_3.h | 5 TDA-1.5/TDA/src/CGAL/internal/Static_filters/Static_filter_error.h | 13 TDA-1.5/TDA/src/CGAL/internal/Static_filters/Static_filters.h | 2 TDA-1.5/TDA/src/CGAL/internal/Static_filters/tools.h | 97 + 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|only TDA-1.5/TDA/src/gudhi/Alpha_complex.h |only TDA-1.5/TDA/src/gudhi/Debug_utils.h |only TDA-1.5/TDA/src/gudhi/Off_reader.h |only TDA-1.5/TDA/src/gudhi/Persistent_cohomology.h | 195 +- TDA-1.5/TDA/src/gudhi/Persistent_cohomology/Field_Zp.h | 37 TDA-1.5/TDA/src/gudhi/Persistent_cohomology/Multi_field.h | 40 TDA-1.5/TDA/src/gudhi/Persistent_cohomology/Persistent_cohomology_column.h | 36 TDA-1.5/TDA/src/gudhi/Points_off_io.h |only TDA-1.5/TDA/src/gudhi/Simple_object_pool.h |only TDA-1.5/TDA/src/gudhi/Simplex_tree.h | 933 +++++++--- TDA-1.5/TDA/src/gudhi/Simplex_tree/Simplex_tree_iterators.h | 104 - TDA-1.5/TDA/src/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h | 49 TDA-1.5/TDA/src/gudhi/Simplex_tree/Simplex_tree_siblings.h | 44 TDA-1.5/TDA/src/gudhi/Simplex_tree/indexing_tag.h | 6 TDA-1.5/TDA/src/gudhi/distance_functions.h | 66 TDA-1.5/TDA/src/gudhi/graph_simplicial_complex.h | 125 - TDA-1.5/TDA/src/gudhi/reader_utils.h | 195 +- TDA-1.5/TDA/src/tdautils/dionysusUtils.h | 18 TDA-1.5/TDA/src/tdautils/gridUtils.h | 67 TDA-1.5/TDA/src/tdautils/gudhiUtils.h | 14 TDA-1.5/TDA/src/tdautils/phatUtils.h | 24 TDA-1.5/TDA/src/tdautils/typecastUtils.h | 78 TDA-1.5/TDA/src/topology/dynamic-persistence.h | 12 TDA-1.5/TDA/src/topology/dynamic-persistence.hpp | 28 TDA-1.5/TDA/src/topology/lsvineyard.hpp | 4 TDA-1.5/TDA/src/topology/static-persistence.h | 5 TDA-1.5/TDA/src/topology/static-persistence.hpp | 2 TDA-1.5/TDA/src/utilities/counter.h | 6 TDA-1.5/TDA/vignettes/article.Rnw | 194 +- TDA-1.5/TDA/vignettes/biblio.bib | 58 325 files changed, 5101 insertions(+), 2517 deletions(-)
Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (mosaic-web.org) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel T. Kaplan
<kaplan@macalester.edu>, Nicholas J. Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaic versions 0.13.0 dated 2015-12-18 and 0.14 dated 2016-06-16
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Title: Estimating Time-Varying Mixed Graphical Models
Description: Estimation of time-varying Mixed Graphical model using L1-regularized neighborhood regression.
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Diff between mgm versions 1.1-5 dated 2016-04-23 and 1.1-6 dated 2016-06-16
mgm-1.1-5/mgm/R/f_VARreshape.R |only mgm-1.1-5/mgm/data/data_mixed.RData |only mgm-1.1-5/mgm/data/data_mixed2.RData |only mgm-1.1-5/mgm/man/data_mixed.Rd |only mgm-1.1-5/mgm/man/data_mixed2.Rd |only mgm-1.1-6/mgm/DESCRIPTION | 11 - mgm-1.1-6/mgm/MD5 | 47 ++--- mgm-1.1-6/mgm/NAMESPACE | 30 +-- mgm-1.1-6/mgm/R/VARreshape.R |only mgm-1.1-6/mgm/R/calc.EBIC.R | 1 mgm-1.1-6/mgm/R/mgmfit.R | 81 +++++---- mgm-1.1-6/mgm/R/mgmfit_core.R | 38 +++- mgm-1.1-6/mgm/R/predict.mgm.R |only mgm-1.1-6/mgm/R/print.mgm.R | 36 +++- mgm-1.1-6/mgm/R/summary.mgm.R |only mgm-1.1-6/mgm/R/tv.mgmfit.R | 10 - mgm-1.1-6/mgm/R/tv_var.mgm.R | 15 + mgm-1.1-6/mgm/R/var.mgm.R | 79 ++++----- mgm-1.1-6/mgm/README.md | 5 mgm-1.1-6/mgm/data/autism_data.RData |only mgm-1.1-6/mgm/inst |only mgm-1.1-6/mgm/man/autism_data.Rd |only mgm-1.1-6/mgm/man/mgm-internal.Rd | 7 mgm-1.1-6/mgm/man/mgm-package.Rd | 11 - mgm-1.1-6/mgm/man/mgmfit.Rd | 43 +++-- mgm-1.1-6/mgm/man/predict.mgm.Rd |only mgm-1.1-6/mgm/man/print.mgm.Rd | 15 - mgm-1.1-6/mgm/man/summary.mgm.Rd |only mgm-1.1-6/mgm/man/tv.mgmfit.Rd | 294 +++++++++++++++++----------------- mgm-1.1-6/mgm/man/tv_var.mgm.Rd | 301 ++++++++++++++++++----------------- mgm-1.1-6/mgm/man/var.mgm.Rd | 262 +++++++++++++++--------------- 31 files changed, 700 insertions(+), 586 deletions(-)
Title: Data.frame-Like Operations on Sparse and Dense Matrix Objects
Description: Implements data manipulation methods such as cast, aggregate, and merge/join for Matrix and matrix-like objects.
Author: Craig Varrichio <canthony427@gmail.com>
Maintainer: Craig Varrichio <canthony427@gmail.com>
Diff between Matrix.utils versions 0.9.0 dated 2016-03-28 and 0.9.1 dated 2016-06-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/Matrix.utils.R | 34 +++++++++++++++++++++++++--------- man/aggregate.Matrix.Rd | 10 ++++++++++ 4 files changed, 41 insertions(+), 15 deletions(-)
Title: Item Response Theory Demo Collection
Description:
Includes a collection of shiny applications to demonstrate
or to explore fundamental item response theory (IRT) concepts
such as estimation, scoring, and multidimensional IRT models.
Author: Metin Bulus [aut,cre]
Wes Bonifay [aut,cre]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Diff between irtDemo versions 0.1.0 dated 2016-04-29 and 0.1.1 dated 2016-06-16
DESCRIPTION | 17 ++++++++--------- MD5 | 8 ++++---- NAMESPACE | 3 ++- R/irtDemo.R | 10 ++++++---- man/irtDemo.Rd | 40 ++++++++++++++++++++-------------------- 5 files changed, 40 insertions(+), 38 deletions(-)
Title: Imputation Methods for Multivariate Multinomial Data
Description: Implements imputation methods using EM and Data Augmentation for
multinomial data following the work of Schafer 1997 <ISBN: 978-0-412-04061-0>.
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>
Diff between imputeMulti versions 0.5.2 dated 2016-06-13 and 0.5.3 dated 2016-06-16
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ NAMESPACE | 1 + R/data-tract2221.R | 4 ++++ R/merge_imputed.R |only R/multinomial_data_aug.R | 4 ++-- R/multinomial_em.R | 5 +++-- man/merge_imputed.Rd |only man/tract2221.Rd | 4 ++++ 9 files changed, 25 insertions(+), 13 deletions(-)
Title: Fuzzy Forests
Description: Fuzzy forests, a new algorithm based on random forests,
is designed to reduce the bias seen in random forest feature selection
caused by the presence of correlated features. Fuzzy forests uses
recursive feature elimination random forests to select
features from separate blocks of correlated features where the
correlation within each block of features is high
and the correlation between blocks of features is low.
One final random forest is fit using the surviving features.
This package fits random forests using the 'randomForest' package and
allows for easy use of 'WGCNA' to split features into distinct blocks.
Author: Daniel Conn [aut, cre],
Tuck Ngun [aut],
Christina M. Ramirez [aut]
Maintainer: Daniel Conn <djconn17@gmail.com>
Diff between fuzzyforest versions 1.0.1 dated 2016-03-09 and 1.0.2 dated 2016-06-16
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/CITATION | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Species Distribution Modeling
Description: Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites and the environment at these sites.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between dismo versions 1.0-15 dated 2016-01-10 and 1.1-1 dated 2016-06-16
ChangeLog | 4 DESCRIPTION | 10 MD5 | 44 - R/boundRect.R |only R/circles.R | 10 R/convHull.R | 80 +- R/gbif.R | 3 R/maxent.R | 8 R/rectHull.R |only R/rectHull.predict.R |only R/voronoi.R | 22 R/voronoiHull.R | 113 +-- inst/doc/brt.pdf |binary inst/doc/sdm.R | 116 +-- inst/doc/sdm.Rnw | 11 inst/doc/sdm.pdf | 1682 +++++++++++++++++++++++++-------------------------- man/circles.Rd | 13 man/convexHull.Rd | 7 man/gbif.Rd | 4 man/maxent.Rd | 43 - man/predict.Rd | 1 man/rectHull.Rd |only man/voronoi.Rd | 11 man/voronoiHulll.Rd | 17 vignettes/sdm.Rnw | 11 25 files changed, 1115 insertions(+), 1095 deletions(-)