Title: Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Description: The introduction of the broom package has made converting model
objects into data frames as simple as a single function. While the broom
package focuses on providing tidy data frames that can be used in advanced
analysis, it deliberately stops short of providing functionality for reporting
models in publication-ready tables. pixiedust provides this functionality with
a programming interface intended to be similar to ggplot2's system of layers
with fine tuned control over each cell of the table. Options for output include
printing to the console and to the common markdown formats (markdown, HTML, and
LaTeX). With a little pixiedust (and happy thoughts) tables can really fly.
Author: Benjamin Nutter [aut, cre]
Maintainer: Benjamin Nutter <nutter@battelle.org>
Diff between pixiedust versions 0.7.0 dated 2016-04-17 and 0.7.4 dated 2016-06-17
DESCRIPTION | 10 MD5 | 67 NAMESPACE | 6 NEWS | 31 R/dust.R | 25 R/glance_foot.R | 7 R/pixie_count.R | 6 R/print.dust.R | 10 R/print_dust_console.R | 9 R/print_dust_html.R | 57 R/print_dust_latex.R | 34 R/print_dust_latex_hhline.R | 18 R/print_dust_markdown.R | 10 R/redust.R | 44 R/sprinkle.R | 111 + R/sprinkle_colnames.R | 3 R/sprinkle_table.R | 14 R/sysdata.rda |binary R/tidy_levels_labels.R | 31 R/zzz.R | 2 build/vignette.rds |binary inst/doc/advancedMagic.html | 958 +++++++------ inst/doc/pixiedust.html | 208 +- inst/doc/sprinkles.html | 2242 ++++++++++++++++--------------- inst/sprinkle_documentation.csv | 15 inst/sprinkle_reference.csv | 2 inst/sprinkles.csv | 4 man/print.dust.Rd | 7 man/sprinkle.Rd | 19 man/tidy_levels_labels.Rd | 6 tests/testthat/test-colors.R |only tests/testthat/test-dust.R | 13 tests/testthat/test-medley_all_borders.R | 11 tests/testthat/test-print_dust_methods.R | 42 tests/testthat/test-sprinkles.R | 33 35 files changed, 2262 insertions(+), 1793 deletions(-)
Title: Read Data from Delimited 'MTConnect' Data Files and Perform some
Analysis
Description: Read data in the 'MTConnect'<http://www.mtconnect.org/> standard.
You can use the package to read data from historical 'MTConnect logs' along
with the 'devices.xml' describing
the device. The data is organised into a 'MTConnectDevice' S4 data structure
and some convenience methods are also provided for basic read/view operations.
The package also includes some functions for analysis of 'MTConnect' data. This includes
functions to simulate data (primarily position data, feed rate and velocities)
based on the G code and visualisation functions to compare the actual and simulated data.
Author: Alex Joseph [aut],
Sainath Adapa [aut],
Nitin Madasu [aut],
Subramanyam Ravishankar [aut, cre]
Maintainer: Subramanyam Ravishankar <subramanyam@systeminsights.com>
Diff between mtconnectR versions 0.2.0 dated 2016-03-08 and 1.0.0 dated 2016-06-17
mtconnectR-0.2.0/mtconnectR/NEWS.md |only mtconnectR-0.2.0/mtconnectR/R/dataExtraction_gcode.R |only mtconnectR-0.2.0/mtconnectR/inst/extdata/Devices.xml.txt |only mtconnectR-0.2.0/mtconnectR/inst/extdata/test_devices_2.xml |only mtconnectR-0.2.0/mtconnectR/inst/extdata/test_dmtcd_2.txt |only mtconnectR-0.2.0/mtconnectR/inst/extdata/tft-405-pfh.log |only mtconnectR-0.2.0/mtconnectR/vignettes/example_analysis.html |only mtconnectR-1.0.0/mtconnectR/DESCRIPTION | 32 mtconnectR-1.0.0/mtconnectR/MD5 | 142 + mtconnectR-1.0.0/mtconnectR/NAMESPACE | 17 mtconnectR-1.0.0/mtconnectR/R/MTCCycle.R | 83 - mtconnectR-1.0.0/mtconnectR/R/MTCDataItem.R | 6 mtconnectR-1.0.0/mtconnectR/R/MTCDevice.R | 62 mtconnectR-1.0.0/mtconnectR/R/common.R | 222 ++ mtconnectR-1.0.0/mtconnectR/R/dataExtraction_mtc.R | 136 - mtconnectR-1.0.0/mtconnectR/R/deviceXML.R | 49 mtconnectR-1.0.0/mtconnectR/R/map_gcode_mtc.R |only mtconnectR-1.0.0/mtconnectR/R/merge.R | 6 mtconnectR-1.0.0/mtconnectR/R/mtconnectR.R |only mtconnectR-1.0.0/mtconnectR/R/parse_gcode.R |only mtconnectR-1.0.0/mtconnectR/R/simulate_gcode.R |only mtconnectR-1.0.0/mtconnectR/build/vignette.rds |binary mtconnectR-1.0.0/mtconnectR/data/example_gcode_parsed.rda |only mtconnectR-1.0.0/mtconnectR/data/example_mapped_plot.rda |only mtconnectR-1.0.0/mtconnectR/data/example_mtc_device_3.rda |only mtconnectR-1.0.0/mtconnectR/data/example_mtc_device_sim.rda |only mtconnectR-1.0.0/mtconnectR/data/example_mtc_sim_mapped.rda |only mtconnectR-1.0.0/mtconnectR/data/example_parsed_device_xml.rda |only mtconnectR-1.0.0/mtconnectR/data/example_simulated_gcode_data.rda |only mtconnectR-1.0.0/mtconnectR/inst/doc/create_mtc_device.R | 60 mtconnectR-1.0.0/mtconnectR/inst/doc/create_mtc_device.Rmd | 110 + mtconnectR-1.0.0/mtconnectR/inst/doc/create_mtc_device.html | 765 +++++++--- mtconnectR-1.0.0/mtconnectR/inst/doc/simulate_map_gcode.R |only mtconnectR-1.0.0/mtconnectR/inst/doc/simulate_map_gcode.Rmd |only mtconnectR-1.0.0/mtconnectR/inst/doc/simulate_map_gcode.html |only mtconnectR-1.0.0/mtconnectR/inst/extdata/Devices.xml |only mtconnectR-1.0.0/mtconnectR/inst/extdata/data_truncated.bz2 |only mtconnectR-1.0.0/mtconnectR/inst/extdata/raw_gcode.NC |only mtconnectR-1.0.0/mtconnectR/inst/extdata/raw_gcode_sample.NC |only mtconnectR-1.0.0/mtconnectR/inst/gcode_dict.csv |only mtconnectR-1.0.0/mtconnectR/man/MTCCycle-class.Rd |only mtconnectR-1.0.0/mtconnectR/man/MTCDevice-class.Rd |only mtconnectR-1.0.0/mtconnectR/man/add_data_item_to_mtc_device.Rd | 10 mtconnectR-1.0.0/mtconnectR/man/calculated_feed_from_position.Rd |only mtconnectR-1.0.0/mtconnectR/man/clean_reduntant_rows.Rd | 14 mtconnectR-1.0.0/mtconnectR/man/convert_interval_to_ts.Rd | 9 mtconnectR-1.0.0/mtconnectR/man/convert_ts_to_interval.Rd | 9 mtconnectR-1.0.0/mtconnectR/man/create_mtc_device_from_dmtcd.Rd | 2 mtconnectR-1.0.0/mtconnectR/man/create_mtc_device_from_ts.Rd | 4 mtconnectR-1.0.0/mtconnectR/man/example_dmtcd.Rd | 10 mtconnectR-1.0.0/mtconnectR/man/example_gcode_parsed.Rd |only mtconnectR-1.0.0/mtconnectR/man/example_mapped_plot.Rd |only mtconnectR-1.0.0/mtconnectR/man/example_mtc_data_item.Rd | 8 mtconnectR-1.0.0/mtconnectR/man/example_mtc_device.Rd | 4 mtconnectR-1.0.0/mtconnectR/man/example_mtc_device_2.Rd | 2 mtconnectR-1.0.0/mtconnectR/man/example_mtc_device_3.Rd |only mtconnectR-1.0.0/mtconnectR/man/example_mtc_device_sim.Rd |only mtconnectR-1.0.0/mtconnectR/man/example_mtc_sim_mapped.Rd |only mtconnectR-1.0.0/mtconnectR/man/example_parsed_device_xml.Rd |only mtconnectR-1.0.0/mtconnectR/man/example_simulated_gcode_data.Rd |only mtconnectR-1.0.0/mtconnectR/man/example_xpath_info.Rd | 2 mtconnectR-1.0.0/mtconnectR/man/extract_param_from_xpath.Rd | 8 mtconnectR-1.0.0/mtconnectR/man/filter_timestamps_mtc_device.Rd |only mtconnectR-1.0.0/mtconnectR/man/getData-MTCCycle-method.Rd | 6 mtconnectR-1.0.0/mtconnectR/man/getData-MTCDataItem-method.Rd | 2 mtconnectR-1.0.0/mtconnectR/man/getData.Rd | 4 mtconnectR-1.0.0/mtconnectR/man/getDataItem-MTCCycle-ANY-method.Rd | 2 mtconnectR-1.0.0/mtconnectR/man/getDataItem-MTCCycle-character-method.Rd | 4 mtconnectR-1.0.0/mtconnectR/man/getDataItem-MTCCycle-numeric-method.Rd | 4 mtconnectR-1.0.0/mtconnectR/man/getDataItem.Rd | 4 mtconnectR-1.0.0/mtconnectR/man/get_device_info_from_xml.Rd | 2 mtconnectR-1.0.0/mtconnectR/man/get_xpaths_from_xml.Rd | 6 mtconnectR-1.0.0/mtconnectR/man/grep_subset.Rd |only mtconnectR-1.0.0/mtconnectR/man/map_gcode_mtc.Rd |only mtconnectR-1.0.0/mtconnectR/man/merge-MTCCycle-ANY-method.Rd | 2 mtconnectR-1.0.0/mtconnectR/man/merge-MTCCycle-character-method.Rd | 8 mtconnectR-1.0.0/mtconnectR/man/merge-MTCCycle-numeric-method.Rd | 8 mtconnectR-1.0.0/mtconnectR/man/mergeTS.Rd | 7 mtconnectR-1.0.0/mtconnectR/man/mtconnectR.Rd |only mtconnectR-1.0.0/mtconnectR/man/parse_devicexml_for_a_device.Rd |only mtconnectR-1.0.0/mtconnectR/man/parse_gcode.Rd |only mtconnectR-1.0.0/mtconnectR/man/plot_twoway.Rd |only mtconnectR-1.0.0/mtconnectR/man/read_dmtcd_file.Rd | 6 mtconnectR-1.0.0/mtconnectR/man/simulate_data_from_gcode.Rd |only mtconnectR-1.0.0/mtconnectR/man/summary-MTCCycle-method.Rd | 2 mtconnectR-1.0.0/mtconnectR/tests/testthat.R | 2 mtconnectR-1.0.0/mtconnectR/tests/testthat/test-MTCCycle.R | 18 mtconnectR-1.0.0/mtconnectR/tests/testthat/test-MTCDataItem.R | 4 mtconnectR-1.0.0/mtconnectR/tests/testthat/test-MTCDevice.R | 36 mtconnectR-1.0.0/mtconnectR/tests/testthat/test-common.R | 19 mtconnectR-1.0.0/mtconnectR/tests/testthat/test-dataExtraction_mtc.R | 4 mtconnectR-1.0.0/mtconnectR/tests/testthat/test-deviceXML.R |only mtconnectR-1.0.0/mtconnectR/tests/testthat/test-map_gcode_mtc.R |only mtconnectR-1.0.0/mtconnectR/tests/testthat/test-mtconnectR_staging.R |only mtconnectR-1.0.0/mtconnectR/tests/testthat/test-parse_gcode.R |only mtconnectR-1.0.0/mtconnectR/tests/testthat/test-simulate_gcode.R |only mtconnectR-1.0.0/mtconnectR/vignettes/simulate_map_gcode.Rmd |only 97 files changed, 1414 insertions(+), 508 deletions(-)
Title: Pretty Time of Day
Description: Implements an S3 class for storing and formatting time-of-day
values, based on the 'difftime' class.
Author: Kirill Müller [aut, cre],
The R Consortium [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between hms versions 0.1 dated 2016-05-03 and 0.2 dated 2016-06-17
DESCRIPTION | 16 ++++++++++------ MD5 | 19 +++++++++++-------- NAMESPACE | 1 + NEWS.md | 12 +++++++++++- R/arith.R |only R/format.R |only R/hms.R | 15 +++++++++++++-- README.md | 11 ++++++----- man/hms.Rd | 5 ++++- tests/testthat/test-arith.R | 18 ++++++++++++++++++ tests/testthat/test-output.R | 41 ++++++++++++++++++++++++++++++++++++++++- tests/testthat/test-subset.R |only 12 files changed, 114 insertions(+), 24 deletions(-)
Title: High-Dimensional Metrics
Description: Implementation of selected high-dimensional statistical and
econometric methods for estimation and inference. Efficient estimators and
uniformly valid confidence intervals for various low-dimensional causal/
structural parameters are provided which appear in high-dimensional
approximately sparse models. Including functions for fitting heteroscedastic
robust Lasso regressions with non-Gaussian errors and for instrumental variable
(IV) and treatment effect estimation in a high-dimensional setting. Moreover,
the methods enable valid post-selection inference and rely on a theoretically
grounded, data-driven choice of the penalty.
Author: Martin Spindler [cre, aut],
Victor Chernozhukov [aut],
Christian Hansen [aut]
Maintainer: Martin Spindler <spindler@mea.mpisoc.mpg.de>
Diff between hdm versions 0.1.0 dated 2016-02-02 and 0.2.0 dated 2016-06-17
hdm-0.1.0/hdm/inst/doc/hdm.pdf |only hdm-0.1.0/hdm/inst/doc/hdm_vignette.Rnw |only hdm-0.1.0/hdm/inst/doc/hdm_vignette.pdf |only hdm-0.1.0/hdm/vignettes/hdm_vignette.Rnw |only hdm-0.2.0/hdm/DESCRIPTION | 25 hdm-0.2.0/hdm/MD5 | 113 +-- hdm-0.2.0/hdm/NAMESPACE | 37 + hdm-0.2.0/hdm/R/LassoShooting.fit.R | 3 hdm-0.2.0/hdm/R/help_functions.R | 463 ++++++++++++++- hdm-0.2.0/hdm/R/pkg-package.R | 72 ++ hdm-0.2.0/hdm/R/rlasso.R | 378 +++++++++--- hdm-0.2.0/hdm/R/rlassoEffects.R | 189 ++++-- hdm-0.2.0/hdm/R/rlassoIV.R | 202 +++--- hdm-0.2.0/hdm/R/rlassoIVselectX.R | 52 + hdm-0.2.0/hdm/R/rlassoIVselectZ.R | 46 + hdm-0.2.0/hdm/R/rlassologit.R | 288 +++++++-- hdm-0.2.0/hdm/R/rlassologitEffect.R | 120 ++- hdm-0.2.0/hdm/R/rlassotreatment.R | 112 +++ hdm-0.2.0/hdm/R/tsls.R | 43 + hdm-0.2.0/hdm/build/vignette.rds |binary hdm-0.2.0/hdm/data/AJR.rda |binary hdm-0.2.0/hdm/data/BLP.rda |only hdm-0.2.0/hdm/data/EminentDomain.rda |binary hdm-0.2.0/hdm/data/GrowthData.rda |binary hdm-0.2.0/hdm/data/cps2012.rda |only hdm-0.2.0/hdm/data/datalist | 2 hdm-0.2.0/hdm/data/pension.rda |binary hdm-0.2.0/hdm/inst/CITATION |only hdm-0.2.0/hdm/inst/doc/hdm_introduction.Rnw |only hdm-0.2.0/hdm/inst/doc/hdm_introduction.pdf |only hdm-0.2.0/hdm/man/AJR.Rd | 6 hdm-0.2.0/hdm/man/BLP.Rd |only hdm-0.2.0/hdm/man/EminentDomain.Rd | 12 hdm-0.2.0/hdm/man/Growth-Data.Rd | 5 hdm-0.2.0/hdm/man/LassoShooting.fit.Rd | 4 hdm-0.2.0/hdm/man/TE.Rd | 59 + hdm-0.2.0/hdm/man/cps2012.Rd |only hdm-0.2.0/hdm/man/hdm-package.Rd | 18 hdm-0.2.0/hdm/man/lambdaCalculation.Rd | 4 hdm-0.2.0/hdm/man/methods.rlasso.Rd | 6 hdm-0.2.0/hdm/man/methods.rlassoEffects.Rd | 8 hdm-0.2.0/hdm/man/methods.rlassoIV.Rd | 6 hdm-0.2.0/hdm/man/methods.rlassoIVselectX.Rd | 6 hdm-0.2.0/hdm/man/methods.rlassoIVselectZ.Rd | 6 hdm-0.2.0/hdm/man/methods.rlassoTE.Rd | 4 hdm-0.2.0/hdm/man/methods.rlassologit.Rd | 6 hdm-0.2.0/hdm/man/methods.rlassologitEffects.Rd | 6 hdm-0.2.0/hdm/man/methods.tsls.Rd | 6 hdm-0.2.0/hdm/man/pension.Rd | 4 hdm-0.2.0/hdm/man/rlasso.Rd | 70 +- hdm-0.2.0/hdm/man/rlassoEffects.Rd | 62 +- hdm-0.2.0/hdm/man/rlassoIV.Rd | 47 + hdm-0.2.0/hdm/man/rlassoIVselectX.Rd | 40 - hdm-0.2.0/hdm/man/rlassoIVselectZ.Rd | 27 hdm-0.2.0/hdm/man/rlassologit.Rd | 38 - hdm-0.2.0/hdm/man/rlassologitEffects.Rd | 29 hdm-0.2.0/hdm/man/summary.rlassoEffects.Rd | 2 hdm-0.2.0/hdm/man/tsls.Rd | 31 - hdm-0.2.0/hdm/tests/testthat/no_test_LassoShooting.fit.R |only hdm-0.2.0/hdm/tests/testthat/no_test_rlasso.R |only hdm-0.2.0/hdm/tests/testthat/no_test_rlasso_MS.R |only hdm-0.2.0/hdm/tests/testthat/no_test_rlasso_predict_MS.R |only hdm-0.2.0/hdm/tests/testthat/no_test_rlassologit_MS.R |only hdm-0.2.0/hdm/tests/testthat/test_rlasso.R | 60 - hdm-0.2.0/hdm/vignettes/hdm_introduction.Rnw |only hdm-0.2.0/hdm/vignettes/mybib.bib | 25 66 files changed, 2102 insertions(+), 640 deletions(-)
Title: Forest Growth Model Utilities
Description: Growth models and forest production require existing data
manipulation and the creation of new data, structured from basic forest
inventory data. The purpose of this package is provide functions to support
these activities.
Author: Clayton Vieira Fraga Filho,
Ana Paula Simiqueli,
Gilson Fernandes da Silva,
Wagner Amorim da Silva Altoe
Maintainer: Clayton Vieira Fraga Filho <altoe.wagner@gmail.com>
Diff between Fgmutils versions 0.4 dated 2015-11-18 and 0.5 dated 2016-06-17
DESCRIPTION | 20 +++++---- MD5 | 78 ++++++++++++++++++++------------------ NAMESPACE | 13 +++++- NEWS | 4 + R/add.col.R |only R/atualizaCampoBase.R | 27 ++++++------- R/avaliaAjuste.R | 1 R/defineClasses.R |only R/gravaDocResultado.R |only R/gravaResultado.R |only R/listToDataFrame.R | 10 ++-- man/R21a.Rd | 2 man/R29a.Rd | 2 man/add.col.Rd |only man/atualizaCampoBase.Rd | 7 ++- man/avaliaAjuste.Rd | 2 man/bias.Rd | 2 man/calculaA.Rd | 2 man/calculaPerc.Rd | 2 man/ce.Rd | 2 man/check.integer.Rd | 2 man/classificaClasseDAP.Rd | 2 man/converteCampoParaCharacter.Rd | 2 man/criaDadosPareados.Rd | 2 man/defineClasses.Rd |only man/defineClasses2.Rd | 2 man/fator_bias.Rd | 7 --- man/getAnoMedicao.Rd | 2 man/gravaDocResultado.Rd |only man/gravaResultado.Rd |only man/ifrm.Rd | 2 man/isfinitedataframe.Rd | 2 man/listToDataFrame.Rd | 2 man/mae.Rd | 2 man/mse.Rd | 2 man/mspr.Rd | 2 man/residuoPerc.Rd | 2 man/retornaValor.Rd | 2 man/rmse.Rd | 2 man/rrmse.Rd | 2 man/syx.Rd | 2 man/syxPerc.Rd | 2 man/verificaTipoColuna.Rd | 2 man/whichmedian.Rd | 2 44 files changed, 123 insertions(+), 98 deletions(-)
Title: Solve Generalized Estimating Equations
Description: GEE estimation of the parameters in mean structures with possible correlation between the outcomes. User-specified mean link and variance functions are allowed, along with observation weighting. The "M" in the name "geeM" is meant to emphasize the use of the Matrix package, which allows for an implementation based fully in R.
Author: Lee McDaniel [aut, cre],
Nick Henderson [aut],
Melanie Prague [ctb] (Suggested code to fix weighting)
Maintainer: Lee McDaniel <lmcda4@lsuhsc.edu>
Diff between geeM versions 0.8.0 dated 2015-10-25 and 0.9.0 dated 2016-06-17
DESCRIPTION | 19 ++- MD5 | 14 +- R/geem.R | 246 +++++++++++++++++++++++++-------------------- R/updatealpha.R | 63 ++++++----- R/updatematrices.R | 286 +++++++++++++++++++++++++++-------------------------- R/userstruct.R | 153 ++++++++++++++-------------- R/utility.R | 6 - man/geem.Rd | 2 8 files changed, 418 insertions(+), 371 deletions(-)
Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via JAGS. Three types of models may be fitted: 1) With explanatory variables only, boral fits independent column GLMs to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui
Maintainer: Francis Hui <fhui28@gmail.com>
Diff between boral versions 0.9.1 dated 2015-09-25 and 1.0 dated 2016-06-17
boral-0.9.1/boral/tests |only boral-1.0/boral/DESCRIPTION | 10 boral-1.0/boral/MD5 | 42 boral-1.0/boral/NAMESPACE | 3 boral-1.0/boral/R/auxilaryfunctions.R | 914 ++++++++++------ boral-1.0/boral/R/boral.jags.R | 1363 +++++++++++++------------ boral-1.0/boral/inst/NEWS.Rd | 62 - boral-1.0/boral/man/boral-package.Rd | 9 boral-1.0/boral/man/boral.Rd | 225 +++- boral-1.0/boral/man/coefsplot.Rd |only boral-1.0/boral/man/create.life.Rd | 56 - boral-1.0/boral/man/ds.residuals.Rd | 7 boral-1.0/boral/man/fitted.boral.Rd | 2 boral-1.0/boral/man/get.dic.Rd | 3 boral-1.0/boral/man/get.enviro.cor.Rd | 1 boral-1.0/boral/man/get.hpdintervals.Rd | 4 boral-1.0/boral/man/get.measures.Rd | 3 boral-1.0/boral/man/get.more.measures.Rd | 3 boral-1.0/boral/man/lvsplot.Rd | 31 boral-1.0/boral/man/make.jagsboralmodel.Rd | 75 - boral-1.0/boral/man/make.jagsboralnullmodel.Rd | 62 - boral-1.0/boral/man/plot.boral.Rd | 25 22 files changed, 1701 insertions(+), 1199 deletions(-)
Title: Estimation and Testing of Average Hazard Ratios
Description: Methods for estimation of multivariate average hazard ratios as
defined by Kalbfleisch and Prentice. The underlying survival functions of the
event of interest in each group can be estimated using either the (weighted)
Kaplan-Meier estimator or the Aalen-Johansen estimator for the transition
probabilities in Markov multi-state models. Right-censored and left-truncated
data is supported. Moreover, the difference in restricted mean survival can be
estimated.
Author: Matthias Brueckner <matthias.brueckner@posteo.de>
Maintainer: Matthias Brueckner <matthias.brueckner@posteo.de>
Diff between AHR versions 1.4 dated 2016-03-30 and 1.4.1 dated 2016-06-17
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Estimation in Adaptive Group Sequential Trials
Description: Calculation of repeated confidence intervals as well as confidence
intervals based on the stage-wise ordering in group sequential designs and
adaptive group sequential designs. For adaptive group sequential designs
the confidence intervals are based on the conditional rejection probability
principle. Currently the procedures do not support the use of futility
boundaries or more than one adaptive interim analysis.
Author: Niklas Hack, Werner Brannath, Matthias Brueckner
Maintainer: Matthias Brueckner <matthias.brueckner@posteo.de>
Diff between AGSDest versions 2.3 dated 2015-07-02 and 2.3.1 dated 2016-06-17
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- build/vignette.rds |binary inst/doc/vignette.pdf |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: The YUIMA Project Package for SDEs
Description: Simulation and Inference for Stochastic Differential Equations.
Author: YUIMA Project Team
Maintainer: Stefano M. Iacus <stefano.iacus@unimi.it>
Diff between yuima versions 1.0.81 dated 2016-02-24 and 1.1.0 dated 2016-06-17
yuima-1.0.81/yuima/man/cogarch.gmm.incr.rd |only yuima-1.0.81/yuima/man/cogarch.gmm.rd |only yuima-1.0.81/yuima/man/setMaps.Rd |only yuima-1.0.81/yuima/man/setMultiModel.Rd |only yuima-1.1.0/yuima/DESCRIPTION | 6 yuima-1.1.0/yuima/MD5 | 63 - yuima-1.1.0/yuima/NAMESPACE | 20 yuima-1.1.0/yuima/NEWS | 2 yuima-1.1.0/yuima/R/ClassCogarch.R | 43 yuima-1.1.0/yuima/R/DiagnosticCogarch.R | 48 - yuima-1.1.0/yuima/R/FunctionAndOperators.R | 199 ++-- yuima-1.1.0/yuima/R/MM.COGARCH.R | 649 +++++++++------ yuima-1.1.0/yuima/R/NewClasses.R | 192 ++-- yuima-1.1.0/yuima/R/PseudoLogLikCOGARCH.R | 73 + yuima-1.1.0/yuima/R/cogarchNoise.R | 53 - yuima-1.1.0/yuima/R/qmle.R | 44 - yuima-1.1.0/yuima/R/rng.R | 124 ++ yuima-1.1.0/yuima/R/setMultiModel.R | 2 yuima-1.1.0/yuima/R/sim.euler.R | 107 +- yuima-1.1.0/yuima/R/simulate.R | 4 yuima-1.1.0/yuima/R/simulateForMapsIntegralAndOperator.R | 119 ++ yuima-1.1.0/yuima/R/yuima.model.R | 339 ++++++- yuima-1.1.0/yuima/man/Integral.sde.rd |only yuima-1.1.0/yuima/man/Integrand.rd |only yuima-1.1.0/yuima/man/adaBayes.Rd | 5 yuima-1.1.0/yuima/man/cogarch.est.incr.rd |only yuima-1.1.0/yuima/man/cogarch.est.rd |only yuima-1.1.0/yuima/man/cogarchNoise.Rd | 7 yuima-1.1.0/yuima/man/gmm.rd | 23 yuima-1.1.0/yuima/man/param.Integral.rd |only yuima-1.1.0/yuima/man/qmle.Rd | 23 yuima-1.1.0/yuima/man/rng.Rd | 297 ++++-- yuima-1.1.0/yuima/man/setIntegral.Rd |only yuima-1.1.0/yuima/man/setMap.Rd |only yuima-1.1.0/yuima/man/variable.Integral.rd |only yuima-1.1.0/yuima/man/yuima.Integral-class.rd |only yuima-1.1.0/yuima/man/yuima.Output-class.Rd | 2 yuima-1.1.0/yuima/man/yuima.multimodel.Rd | 134 +++ yuima-1.1.0/yuima/src/Mt.h |only yuima-1.1.0/yuima/src/rpts.c |only 40 files changed, 1720 insertions(+), 858 deletions(-)
Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
such as verifying species names, and getting taxonomic 'hierarchies'.
Author: Scott Chamberlain [aut, cre],
Eduard Szoecs [aut],
Zachary Foster [aut],
Carl Boettiger [aut],
Karthik Ram [aut],
Ignasi Bartomeus [aut],
John Baumgartner [aut],
James O'Donnell [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between taxize versions 0.7.6 dated 2016-05-11 and 0.7.8 dated 2016-06-17
taxize-0.7.6/taxize/inst/NEWS.Rd |only taxize-0.7.6/taxize/inst/ignore/wikispecies.R |only taxize-0.7.6/taxize/tests/testthat/Rplots.pdf |only taxize-0.7.8/taxize/DESCRIPTION | 6 taxize-0.7.8/taxize/MD5 | 172 ++++------ taxize-0.7.8/taxize/NEWS.md | 19 + taxize-0.7.8/taxize/R/classification.R | 20 - taxize-0.7.8/taxize/R/fungorum.R | 2 taxize-0.7.8/taxize/R/genbank2uid.R | 16 taxize-0.7.8/taxize/R/itis.R | 6 taxize-0.7.8/taxize/R/itis_acceptname.R | 54 ++- taxize-0.7.8/taxize/R/iucn_summary.R | 14 taxize-0.7.8/taxize/R/ncbi_get_taxon_summary.R | 7 taxize-0.7.8/taxize/R/synonyms.R | 16 taxize-0.7.8/taxize/R/tax_agg.R | 45 +- taxize-0.7.8/taxize/R/tax_name.R | 64 ++- taxize-0.7.8/taxize/README.md | 2 taxize-0.7.8/taxize/data/rank_ref.RData |binary taxize-0.7.8/taxize/man/fungorum.Rd | 2 taxize-0.7.8/taxize/man/genbank2uid.Rd | 4 taxize-0.7.8/taxize/man/itis_acceptname.Rd | 47 ++ taxize-0.7.8/taxize/man/iucn_summary.Rd | 11 taxize-0.7.8/taxize/man/ncbi_get_taxon_summary.Rd | 8 taxize-0.7.8/taxize/man/synonyms.Rd | 2 taxize-0.7.8/taxize/man/tax_agg.Rd | 45 +- taxize-0.7.8/taxize/man/tax_name.Rd | 31 - taxize-0.7.8/taxize/tests/test-all.R |only taxize-0.7.8/taxize/tests/testthat/test-apgscraping.R | 11 taxize-0.7.8/taxize/tests/testthat/test-bold_search.R | 22 - taxize-0.7.8/taxize/tests/testthat/test-class2tree.R | 13 taxize-0.7.8/taxize/tests/testthat/test-classification.R | 53 +-- taxize-0.7.8/taxize/tests/testthat/test-col_children.R | 31 - taxize-0.7.8/taxize/tests/testthat/test-col_downstream.R | 12 taxize-0.7.8/taxize/tests/testthat/test-col_search.R | 15 taxize-0.7.8/taxize/tests/testthat/test-comm2sci.R | 20 - taxize-0.7.8/taxize/tests/testthat/test-downstream.R | 12 taxize-0.7.8/taxize/tests/testthat/test-eol_dataobjects.R | 2 taxize-0.7.8/taxize/tests/testthat/test-eol_pages.R | 11 taxize-0.7.8/taxize/tests/testthat/test-eol_ping.R | 2 taxize-0.7.8/taxize/tests/testthat/test-eol_search.R | 4 taxize-0.7.8/taxize/tests/testthat/test-gbif_downstream.R | 8 taxize-0.7.8/taxize/tests/testthat/test-gbif_parse.R | 11 taxize-0.7.8/taxize/tests/testthat/test-get_boldid.R | 6 taxize-0.7.8/taxize/tests/testthat/test-get_colid.R | 12 taxize-0.7.8/taxize/tests/testthat/test-get_eolid.R | 12 taxize-0.7.8/taxize/tests/testthat/test-get_ids.R | 15 taxize-0.7.8/taxize/tests/testthat/test-get_tpsid.R | 10 taxize-0.7.8/taxize/tests/testthat/test-get_tsn.R | 6 taxize-0.7.8/taxize/tests/testthat/test-get_uid.R | 10 taxize-0.7.8/taxize/tests/testthat/test-gni_details.R | 4 taxize-0.7.8/taxize/tests/testthat/test-gni_parse.R | 9 taxize-0.7.8/taxize/tests/testthat/test-gni_search.R | 4 taxize-0.7.8/taxize/tests/testthat/test-gnr_resolve.R | 15 taxize-0.7.8/taxize/tests/testthat/test-ipni_search.R | 6 taxize-0.7.8/taxize/tests/testthat/test-itis.R | 20 - taxize-0.7.8/taxize/tests/testthat/test-itis_acceptname.R | 27 + taxize-0.7.8/taxize/tests/testthat/test-itis_downstream.R | 11 taxize-0.7.8/taxize/tests/testthat/test-itis_getrecord.R | 10 taxize-0.7.8/taxize/tests/testthat/test-itis_hierarchy.R | 11 taxize-0.7.8/taxize/tests/testthat/test-itis_kingdomnames.R | 11 taxize-0.7.8/taxize/tests/testthat/test-itis_lsid.R | 13 taxize-0.7.8/taxize/tests/testthat/test-itis_native.R | 11 taxize-0.7.8/taxize/tests/testthat/test-itis_ping.R | 7 taxize-0.7.8/taxize/tests/testthat/test-itis_refs.R | 7 taxize-0.7.8/taxize/tests/testthat/test-itis_taxrank.R | 7 taxize-0.7.8/taxize/tests/testthat/test-itis_terms.R | 11 taxize-0.7.8/taxize/tests/testthat/test-iucn_getname.R | 11 taxize-0.7.8/taxize/tests/testthat/test-iucn_id.R | 13 taxize-0.7.8/taxize/tests/testthat/test-iucn_summary.R | 21 - taxize-0.7.8/taxize/tests/testthat/test-lowest_common.R | 4 taxize-0.7.8/taxize/tests/testthat/test-ncbi_children.R | 7 taxize-0.7.8/taxize/tests/testthat/test-ncbi_get_taxon_summary.R | 23 + taxize-0.7.8/taxize/tests/testthat/test-ping.R | 20 - taxize-0.7.8/taxize/tests/testthat/test-plantminer.R | 4 taxize-0.7.8/taxize/tests/testthat/test-rankagg.R | 16 taxize-0.7.8/taxize/tests/testthat/test-sci2comm.R | 9 taxize-0.7.8/taxize/tests/testthat/test-synonyms.R | 7 taxize-0.7.8/taxize/tests/testthat/test-tax_agg.R | 24 - taxize-0.7.8/taxize/tests/testthat/test-tax_name.R | 26 - taxize-0.7.8/taxize/tests/testthat/test-tax_rank.R | 13 taxize-0.7.8/taxize/tests/testthat/test-tnrs.R | 9 taxize-0.7.8/taxize/tests/testthat/test-tnrs_sources.R | 7 taxize-0.7.8/taxize/tests/testthat/test-tp_accnames.R | 5 taxize-0.7.8/taxize/tests/testthat/test-tp_dist.R | 5 taxize-0.7.8/taxize/tests/testthat/test-tp_refs.R | 5 taxize-0.7.8/taxize/tests/testthat/test-tp_search.R | 13 taxize-0.7.8/taxize/tests/testthat/test-tp_summary.R | 7 taxize-0.7.8/taxize/tests/testthat/test-tp_synonyms.R | 9 taxize-0.7.8/taxize/tests/testthat/test-vascan_search.r | 13 89 files changed, 842 insertions(+), 504 deletions(-)
Title: Easily Harvest (Scrape) Web Pages
Description: Wrappers around the 'xml2' and 'httr' packages to make it easy to
download, then manipulate, HTML and XML.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between rvest versions 0.3.1 dated 2015-11-11 and 0.3.2 dated 2016-06-17
DESCRIPTION | 17 ++- MD5 | 46 ++++----- NEWS.md |only R/encoding.R | 23 +--- R/form.R | 10 +- R/parse.R | 2 R/selectors.R | 19 ++- R/session.R | 22 ++-- R/table.R | 49 +++++++-- R/xml.R | 2 README.md | 12 +- build/vignette.rds |binary demo/united.R | 23 ++-- demo/zillow.R | 48 ++------- inst/doc/selectorgadget.Rmd | 2 inst/doc/selectorgadget.html | 72 ++++++++------ inst/html-ex |only man/encoding.Rd | 23 +--- man/html.Rd | 2 man/html_nodes.Rd | 13 +- man/html_session.Rd | 6 - man/jump_to.Rd | 13 +- man/xml.Rd | 6 - tests/testthat/test-tables.R | 215 +++++++++++++++++++++++++++++++++++++++++++ vignettes/selectorgadget.Rmd | 2 25 files changed, 432 insertions(+), 195 deletions(-)
Title: Probability of Sharing Rare Variants among Relatives
Description: Computes estimates of the probability of related individuals sharing a rare variant.
Author: Alexandre Bureau, Ingo Ruczinski, Samuel G. Younkin
Maintainer: Alexandre Bureau <alexandre.bureau@msp.ulaval.ca>
Diff between RVsharing versions 1.5.0 dated 2016-05-13 and 1.6.0 dated 2016-06-17
DESCRIPTION | 8 ++--- MD5 | 13 ++++---- NAMESPACE | 2 - R/RVgene.R | 4 +- R/RVsharing.fn.R | 60 +++++++++++++++++++++++++++------------ R/functions.R | 23 ++++++++++++++ man/GeneDropSim.allsubsets.fn.Rd |only man/GeneDropSim.fn.Rd | 6 +-- 8 files changed, 83 insertions(+), 33 deletions(-)
Title: R Commander
Description:
A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ctb],
Kosar Karimi Pour [ctb],
G. Jay Kerns [ctb],
Renaud Lancelot [ctb],
Matthieu Lesnoff [ctb],
Uwe Ligges [ctb],
Samir Messad [ctb],
Martin Maechler [ctb],
Robert Muenchen [ctb],
Duncan Murdoch [ctb],
Erich Neuwirth [ctb],
Dan Putler [ctb],
Brian Ripley [ctb],
Miroslav Ristic [ctb],
Peter Wolf [ctb],
Kevin Wright [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between Rcmdr versions 2.2-4 dated 2016-04-04 and 2.2-5 dated 2016-06-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 4 ++++ R/utilities.R | 6 ++++-- man/Rcmdr-package.Rd | 4 ++-- 5 files changed, 18 insertions(+), 12 deletions(-)
Title: Nested Association Mapping Analysis
Description: Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, population genetics analysis, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between NAM versions 1.4.4 dated 2016-03-19 and 1.4.5 dated 2016-06-17
NAM-1.4.4/NAM/R/Fst.R |only NAM-1.4.4/NAM/R/GenDist.R |only NAM-1.4.4/NAM/R/MCreml.R |only NAM-1.4.4/NAM/R/gwas3c.R |only NAM-1.4.4/NAM/R/manhattan2.R |only NAM-1.4.4/NAM/R/reference.R |only NAM-1.4.4/NAM/R/snpH2.R |only NAM-1.4.4/NAM/R/snpQC.R |only NAM-1.4.4/NAM/R/wrapGE.R |only NAM-1.4.5/NAM/DESCRIPTION | 12 NAM-1.4.5/NAM/MD5 | 48 - NAM-1.4.5/NAM/R/gibbs.R | 47 - NAM-1.4.5/NAM/R/gwas.R | 1416 ++++++++++++++++++++++++++++++++++ NAM-1.4.5/NAM/R/reml.R | 58 + NAM-1.4.5/NAM/R/snp.R |only NAM-1.4.5/NAM/R/wgr.R | 139 +++ NAM-1.4.5/NAM/build/vignette.rds |binary NAM-1.4.5/NAM/inst/doc/vignette.Rmd | 38 NAM-1.4.5/NAM/inst/doc/vignette.html | 38 NAM-1.4.5/NAM/inst/doc/vignette2.Rmd | 22 NAM-1.4.5/NAM/inst/doc/vignette2.html | 20 NAM-1.4.5/NAM/man/Internals.Rd | 5 NAM-1.4.5/NAM/man/NAM-package.Rd | 10 NAM-1.4.5/NAM/man/cleanREP.Rd | 2 NAM-1.4.5/NAM/man/gibbs.Rd | 13 NAM-1.4.5/NAM/man/gwas.Rd | 13 NAM-1.4.5/NAM/man/wgr.Rd | 17 NAM-1.4.5/NAM/src/KMUP.cpp | 3 NAM-1.4.5/NAM/vignettes/vignette.Rmd | 38 NAM-1.4.5/NAM/vignettes/vignette2.Rmd | 22 30 files changed, 1769 insertions(+), 192 deletions(-)
Title: Project MOSAIC Data Sets
Description: Data sets from Project MOSAIC (http://mosaic-web.org) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel Kaplan
<kaplan@macalester.edu>, Nicholas Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaicData versions 0.13.0 dated 2015-12-18 and 0.14.0 dated 2016-06-17
mosaicData-0.13.0/mosaicData/R/Dimes.R |only mosaicData-0.13.0/mosaicData/R/SaratogaHouses.R |only mosaicData-0.13.0/mosaicData/R/datasets.R |only mosaicData-0.14.0/mosaicData/DESCRIPTION | 14 ++-- mosaicData-0.14.0/mosaicData/MD5 | 71 +++++++++++---------- mosaicData-0.14.0/mosaicData/NEWS.md |only mosaicData-0.14.0/mosaicData/R/BirthsDoc.R |only mosaicData-0.14.0/mosaicData/R/DimesDoc.R |only mosaicData-0.14.0/mosaicData/R/GoosePermitsDoc.R |only mosaicData-0.14.0/mosaicData/R/SaratogaHousesDoc.R |only mosaicData-0.14.0/mosaicData/R/datasetsDoc.R |only mosaicData-0.14.0/mosaicData/data/Births.rda |only mosaicData-0.14.0/mosaicData/data/GoosePermits.rda |only mosaicData-0.14.0/mosaicData/data/datalist | 2 mosaicData-0.14.0/mosaicData/man/Alcohol.Rd | 2 mosaicData-0.14.0/mosaicData/man/Birthdays.Rd | 2 mosaicData-0.14.0/mosaicData/man/Births.Rd |only mosaicData-0.14.0/mosaicData/man/Births78.Rd | 2 mosaicData-0.14.0/mosaicData/man/CPS85.Rd | 2 mosaicData-0.14.0/mosaicData/man/Cards.Rd | 2 mosaicData-0.14.0/mosaicData/man/CoolingWater.Rd | 2 mosaicData-0.14.0/mosaicData/man/Countries.Rd | 2 mosaicData-0.14.0/mosaicData/man/Dimes.Rd | 2 mosaicData-0.14.0/mosaicData/man/Galton.Rd | 2 mosaicData-0.14.0/mosaicData/man/Gestation.Rd | 2 mosaicData-0.14.0/mosaicData/man/GoosePermits.Rd |only mosaicData-0.14.0/mosaicData/man/HELPfull.Rd | 2 mosaicData-0.14.0/mosaicData/man/HELPmiss.Rd | 2 mosaicData-0.14.0/mosaicData/man/HELPrct.Rd | 2 mosaicData-0.14.0/mosaicData/man/HeatX.Rd | 2 mosaicData-0.14.0/mosaicData/man/KidsFeet.Rd | 2 mosaicData-0.14.0/mosaicData/man/Marriage.Rd | 4 - mosaicData-0.14.0/mosaicData/man/Mites.Rd | 2 mosaicData-0.14.0/mosaicData/man/RailTrail.Rd | 2 mosaicData-0.14.0/mosaicData/man/Riders.Rd | 2 mosaicData-0.14.0/mosaicData/man/SAT.Rd | 2 mosaicData-0.14.0/mosaicData/man/SaratogaHouses.Rd | 2 mosaicData-0.14.0/mosaicData/man/SnowGR.Rd | 2 mosaicData-0.14.0/mosaicData/man/SwimRecords.Rd | 2 mosaicData-0.14.0/mosaicData/man/TenMileRace.Rd | 2 mosaicData-0.14.0/mosaicData/man/Utilities.Rd | 2 mosaicData-0.14.0/mosaicData/man/Utilities2.Rd | 2 mosaicData-0.14.0/mosaicData/man/Whickham.Rd | 2 43 files changed, 76 insertions(+), 67 deletions(-)
Title: In-Process Version of MonetDB for R
Description: An in-process version of MonetDB, a relational database focused on analytical tasks. Similar to SQLite, the database runs entirely inside the R shell, with the main difference that queries complete much faster thanks to MonetDB's columnar architecture.
Author: Hannes Muehleisen [aut, cre], Anthony Damico [aut], Mark Raasveldt [ctb], Thomas Lumley [ctb], MonetDB Development Team [ctb]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between MonetDBLite versions 0.3.0 dated 2016-06-13 and 0.3.1 dated 2016-06-17
DESCRIPTION | 6 +-- MD5 | 53 +++++++++++++++---------------- R/dplyr.R | 39 ++++++++++++++++++++-- README.md |only configure.win | 4 +- src/common/stream/stream.c | 17 ++++++++- src/configure | 20 +++++------ src/configure.ac | 2 - src/embedded/embedded.c | 1 src/embedded/inlined_scripts.c | 6 +-- src/embedded/windows/monetdb_config.h.in | 4 +- src/gdk/gdk_atoms.c | 33 +++++++++++++++++++ src/gdk/gdk_system_private.h | 2 - src/gdk/libbat.rc | 8 ++-- src/libversions | 4 +- src/mal/ChangeLog-Archive | 2 - src/mal/mal/mal.c | 4 -- src/mal/mal/mal_client.c | 2 - src/mal/tools/libmonetdb5.rc | 8 ++-- src/sql/backends/monet5/sql_round_impl.h | 2 + src/sql/backends/monet5/sql_scenario.c | 7 ++++ src/sql/backends/monet5/sql_upgrades.c | 12 +++++++ src/sql/server/rel_dump.c | 16 +++++++-- src/sql/server/rel_prop.c | 2 - src/sql/server/rel_psm.c | 13 +++++-- src/sql/storage/bat/bat_logger.c | 52 +++++++++++++++--------------- src/sql/storage/store.c | 2 - tests/testthat/test_03_dplyr.R | 6 +-- 28 files changed, 219 insertions(+), 108 deletions(-)
Title: Multivariate ARIMA and ARIMA-X Analysis
Description: Multivariate arima and arima-x estimation using Spliid's algorithm
(marima) and simulation (marima.sim).
Author: Henrik Spliid
Maintainer: Henrik Spliid <hspl@dtu.dk>
Diff between marima versions 1.5 dated 2016-06-13 and 2.0 dated 2016-06-17
DESCRIPTION | 11 +++++----- MD5 | 22 +++++++++++--------- NAMESPACE | 2 + R/Data.R | 1 R/Data2.R |only R/arma.forecasting.R | 45 +++++++++++++++++++++++++++++----------- R/defining.programs.R | 52 +++++++++++++++++++++++++++++++++++------------ R/marima.R | 35 ++++++++++++++++++++++++------- R/marima.sim.R | 12 +++++++--- R/mat.polyn.R | 55 ++++++++++++++++++++++++++++++++++++++++++-------- data/C20.rda |only man/C20.Rd |only man/lead.one.Rd |only man/marima.sim.Rd | 8 ++++--- 14 files changed, 180 insertions(+), 63 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Automated identification and estimation of group- and
individual-level relations in time series data from within a structural
equation modeling framework.
Author: Stephanie Lane [aut, cre, trl],
Kathleen Gates [aut],
Peter Molenaar [aut],
Michael Hallquist [ctb],
Hallie Pike [ctb]
Maintainer: Stephanie Lane <slane@unc.edu>
Diff between gimme versions 0.1-6 dated 2015-10-27 and 0.1-7 dated 2016-06-17
DESCRIPTION | 21 MD5 | 34 NAMESPACE | 5 R/aggSEM.R | 11 R/gimme-pkg.R | 2 R/gimme.R | 1987 ++++++++++++++++++++++++++---------------------- R/gimmeInteractive.R | 355 ++++++-- R/indSEM.R | 37 man/aggSEM.Rd | 6 man/gimme-package.Rd | 6 man/gimmeInteractive.Rd | 10 man/gimmeSEM.Rd | 42 - man/indSEM.Rd | 8 man/ts1.Rd | 2 man/ts2.Rd | 2 man/ts3.Rd | 2 man/ts4.Rd | 2 man/ts5.Rd | 2 18 files changed, 1472 insertions(+), 1062 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate generation, and method-of-moments parameter-estimation functions for the Delaporte distribution. The Delaporte is a discrete probability distribution which can be considered the convolution of a negative binomial distribution with a Poisson distribution. Alternatively, it can be considered a counting distribution with both Poisson and negative binomial components. It has been studied in actuarial science as a frequency distribution which has more variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 2.3.0 dated 2016-06-02 and 2.3.1 dated 2016-06-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/Delaporte.R | 19 ++----------------- inst/NEWS.Rd | 10 +++++++++- man/Delaporte-package.Rd | 4 ++-- man/Delaporte.Rd | 10 ++-------- tests/testthat/test-delap.r | 13 ------------- 8 files changed, 27 insertions(+), 53 deletions(-)
Title: Functions for Thermal Comfort Research
Description: Functions to calculate various common and less common thermal comfort indices, convert physical variables, and evaluate the performance of thermal comfort indices.
Author: Marcel Schweiker [aut, cre] and Sophia Mueller [aut] and Michael Kleber [ctr] and Boris Kingma [ctr] and Masanori Shukuya [ctr]
Maintainer: Marcel Schweiker <marcel.schweiker@kit.edu>
Diff between comf versions 0.1.2 dated 2016-03-26 and 0.1.3 dated 2016-06-17
DESCRIPTION | 13 +-- MD5 | 54 ++++++------- NAMESPACE | 3 NEWS | 11 ++ R/ComfortIndices.r | 10 +- R/dfField.R | 6 - R/fct2Node.r | 31 +++++++ R/fctHBxStSt.r | 2 R/fctHBxUnSt.r | 2 R/fctHelp.r | 2 R/fctPMVPPD.r | 15 +++ R/fctdTNZ.r | 194 ++++++++++++++++++++++++++++---------------------- data/dfField.RData |binary man/calc2Node.Rd | 49 ++++++++++++ man/calcATHB.Rd | 8 ++ man/calcAvgAcc.Rd | 5 + man/calcBias.Rd | 3 man/calcHbExSteady.Rd | 22 ++++- man/calcPMVPPD.Rd | 25 +++++- man/calcPMVadj.Rd | 5 + man/calcPTSadj.Rd | 6 + man/calcTAdapt.Rd | 7 + man/calcTPRTSV.Rd | 2 man/calcTroin.Rd | 14 ++- man/calcdTNZ.Rd | 22 ++++- man/comf-package.Rd | 72 ++++++++++-------- man/cutTSV.Rd | 8 +- man/dfField.Rd | 6 - 28 files changed, 409 insertions(+), 188 deletions(-)
Title: Data Preprocessing, Binning for Classification and Regression
Description: Various supervised and unsupervised binning tools
including using entropy, recursive partition methods
and clustering.
Author: Chapman Siu
Maintainer: Chapman Siu <chpmn.siu@gmail.com>
Diff between binst versions 0.1.0 dated 2016-05-19 and 0.2.0 dated 2016-06-17
DESCRIPTION | 10 +- MD5 | 23 ++++-- NAMESPACE | 7 ++ R/binst.R | 132 +++++++++++++++++++++++++++++++++++---- man/create_bins.Rd | 7 +- man/create_breaks.Rd | 13 +++ man/create_dtbreaks.Rd | 4 - man/create_earthbreaks.Rd |only man/create_jenksbreaks.Rd |only tests/testthat/test_createbins.R | 8 ++ tests/testthat/test_dt.R | 6 + tests/testthat/test_earth.R |only tests/testthat/test_jenks.R |only tests/testthat/test_kmeans.R | 14 ++++ tests/testthat/test_nasremoved.R |only 15 files changed, 192 insertions(+), 32 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre],
Yves Rosseel [aut]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.1-3 dated 2016-03-30 and 0.1-4 dated 2016-06-17
blavaan-0.1-3/blavaan/R/set_phantoms.R |only blavaan-0.1-4/blavaan/DESCRIPTION | 6 +- blavaan-0.1-4/blavaan/MD5 | 24 ++++----- blavaan-0.1-4/blavaan/NEWS | 6 ++ blavaan-0.1-4/blavaan/R/blav_object_methods.R | 4 - blavaan-0.1-4/blavaan/R/blav_utils.R | 6 +- blavaan-0.1-4/blavaan/R/blavaan.R | 65 +++++++++++++++++++------- blavaan-0.1-4/blavaan/R/lav_export_jags.R | 9 ++- blavaan-0.1-4/blavaan/R/set_inits.R | 2 blavaan-0.1-4/blavaan/R/set_partable.R |only blavaan-0.1-4/blavaan/man/bcfa.Rd | 10 +++- blavaan-0.1-4/blavaan/man/bgrowth.Rd | 10 +++- blavaan-0.1-4/blavaan/man/blavaan.Rd | 10 +++- blavaan-0.1-4/blavaan/man/bsem.Rd | 10 +++- 14 files changed, 113 insertions(+), 49 deletions(-)
Title: A Computational Tool for Astrochronology
Description: Routines for astrochronologic testing, astronomical time scale construction, and time series analysis. Also included are a range of statistical analysis and modeling routines that are relevant to time scale development and paleoclimate analysis.
Author: Stephen Meyers
Maintainer: Stephen Meyers <smeyers@geology.wisc.edu>
Diff between astrochron versions 0.5 dated 2015-12-18 and 0.6 dated 2016-06-17
astrochron-0.5/astrochron/R/FUNCTION-delPts_v5.R |only astrochron-0.5/astrochron/R/FUNCTION-getLaskar.R |only astrochron-0.5/astrochron/R/FUNCTION-iso_v8.R |only astrochron-0.5/astrochron/R/FUNCTION-mtmML96_v10.R |only astrochron-0.5/astrochron/R/FUNCTION-mtm_v15.R |only astrochron-0.5/astrochron/R/FUNCTION-timeOptSim_v5c.R |only astrochron-0.5/astrochron/R/FUNCTION-timeOpt_v5c.R |only astrochron-0.6/astrochron/DESCRIPTION | 8 +- astrochron-0.6/astrochron/MD5 | 46 ++++++++-------- astrochron-0.6/astrochron/NAMESPACE | 4 + astrochron-0.6/astrochron/R/FUNCTION-delPts_v6.R |only astrochron-0.6/astrochron/R/FUNCTION-getLaskar_v2.R |only astrochron-0.6/astrochron/R/FUNCTION-iso_v9.R |only astrochron-0.6/astrochron/R/FUNCTION-mtmML96_v11.R |only astrochron-0.6/astrochron/R/FUNCTION-mtm_v16.R |only astrochron-0.6/astrochron/R/FUNCTION-rmNA.R |only astrochron-0.6/astrochron/R/FUNCTION-surrogateCor_v6d.R |only astrochron-0.6/astrochron/R/FUNCTION-surrogates.R | 2 astrochron-0.6/astrochron/R/FUNCTION-timeOptSim_v7b.R |only astrochron-0.6/astrochron/R/FUNCTION-timeOpt_v7c.R |only astrochron-0.6/astrochron/data/modelA.rda |binary astrochron-0.6/astrochron/inst/CITATION | 4 - astrochron-0.6/astrochron/man/astrochron-package.Rd | 6 +- astrochron-0.6/astrochron/man/delPts.Rd | 5 + astrochron-0.6/astrochron/man/getLaskar.Rd | 3 - astrochron-0.6/astrochron/man/mtm.Rd | 2 astrochron-0.6/astrochron/man/mtmAR.Rd | 18 ++++++ astrochron-0.6/astrochron/man/mtmML96.Rd | 4 - astrochron-0.6/astrochron/man/rmNA.Rd |only astrochron-0.6/astrochron/man/surrogateCor.Rd |only astrochron-0.6/astrochron/man/timeOpt.Rd | 5 + astrochron-0.6/astrochron/man/timeOptSim.Rd | 5 + astrochron-0.6/astrochron/src/init_random_seed.f95 | 5 + 33 files changed, 74 insertions(+), 43 deletions(-)