Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre],
Paul Nulty [aut],
Kohei Watanabe [ctb],
Benjamin Lauderdale [ctb],
Adam Obeng [ctb],
Pablo Barberá [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.9.7-16 dated 2016-06-20 and 0.9.7-17 dated 2016-06-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/LitVignette.html | 8 ++++---- inst/doc/quickstart.html | 34 +++++++++++++++++----------------- src/sequences.cpp | 3 ++- 5 files changed, 31 insertions(+), 30 deletions(-)
Title: Miscellaneous Esoteric Statistical Scripts
Description: A mixed collection of useful and semi-useful diverse
statistical functions, some of which may even be referenced in
The R Primer book.
Author: Claus Ekstrøm <claus@rprimer.dk>
Maintainer: Claus Ekstrøm <claus@rprimer.dk>
Diff between MESS versions 0.3-2 dated 2014-10-21 and 0.4-3 dated 2016-06-21
MESS-0.3-2/MESS/R/cmd.R |only MESS-0.3-2/MESS/R/desctable.R |only MESS-0.3-2/MESS/man/MESS-package.Rd |only MESS-0.3-2/MESS/man/desctable.Rd |only MESS-0.4-3/MESS/DESCRIPTION | 29 +++-- MESS-0.4-3/MESS/MD5 | 159 ++++++++++++++++++++---------- MESS-0.4-3/MESS/NAMESPACE | 78 ++++++++++---- MESS-0.4-3/MESS/R/MESS-package.R |only MESS-0.4-3/MESS/R/RcppExports.R |only MESS-0.4-3/MESS/R/adaptive.weights.R | 34 ++++++ MESS-0.4-3/MESS/R/age.R |only MESS-0.4-3/MESS/R/auc.R | 85 ++++++++++++++-- MESS-0.4-3/MESS/R/colorfunctions.R |only MESS-0.4-3/MESS/R/common.shared.R | 61 ++++++++--- MESS-0.4-3/MESS/R/drop1.geeglm.R | 152 +++++++++++++++++++++++----- MESS-0.4-3/MESS/R/extended.shared.R |only MESS-0.4-3/MESS/R/fac2num.R |only MESS-0.4-3/MESS/R/feature.test.R | 105 +++++++++++++++---- MESS-0.4-3/MESS/R/geekin.R | 105 +++++++++++++++++-- MESS-0.4-3/MESS/R/gkgamma.R | 149 +++++++++++++++++----------- MESS-0.4-3/MESS/R/ht.R |only MESS-0.4-3/MESS/R/lower.tri.vector.R | 23 ++++ MESS-0.4-3/MESS/R/ordered.clusters.R | 22 ++++ MESS-0.4-3/MESS/R/panel.R |only MESS-0.4-3/MESS/R/power.binom.test.R | 103 +++++++++++++++++++ MESS-0.4-3/MESS/R/power.mcnemar.test.R | 32 ++++++ MESS-0.4-3/MESS/R/power.t.test.R |only MESS-0.4-3/MESS/R/qic.R | 107 ++++++++++++++------ MESS-0.4-3/MESS/R/residualplot.R | 70 +++++++++++-- MESS-0.4-3/MESS/R/rmvtnorm.pedigree.R | 99 ++++++++++++++++-- MESS-0.4-3/MESS/R/rootonorm.R | 52 +++++++++ MESS-0.4-3/MESS/R/scorefct.R | 41 ++++--- MESS-0.4-3/MESS/R/segregate.genes.R | 31 +++++ MESS-0.4-3/MESS/R/sinv.R |only MESS-0.4-3/MESS/R/wallyplot.R | 95 ++++++++++++++++- MESS-0.4-3/MESS/R/writexml.R |only MESS-0.4-3/MESS/data/datalist | 8 + MESS-0.4-3/MESS/data/earthquakes.rda |only MESS-0.4-3/MESS/data/icecreamads.rda |only MESS-0.4-3/MESS/data/kwdata.rda |only MESS-0.4-3/MESS/data/lifeexpect.rda |only MESS-0.4-3/MESS/data/matched.rda |only MESS-0.4-3/MESS/data/nh4.rda |only MESS-0.4-3/MESS/data/picea.rda |only MESS-0.4-3/MESS/data/smokehealth.rda |only MESS-0.4-3/MESS/man/MESS.Rd |only MESS-0.4-3/MESS/man/QIC.Rd | 91 +++++++++-------- MESS-0.4-3/MESS/man/adaptive.weights.Rd | 71 +++++++------ MESS-0.4-3/MESS/man/age.Rd |only MESS-0.4-3/MESS/man/auc.Rd | 101 +++++++++---------- MESS-0.4-3/MESS/man/bdstat.Rd | 30 +++-- MESS-0.4-3/MESS/man/bees.Rd | 65 +++++------- MESS-0.4-3/MESS/man/clotting.Rd | 98 ++++++++---------- MESS-0.4-3/MESS/man/cmd.Rd | 45 +++----- MESS-0.4-3/MESS/man/col.alpha.Rd |only MESS-0.4-3/MESS/man/col.shade.Rd |only MESS-0.4-3/MESS/man/col.tint.Rd |only MESS-0.4-3/MESS/man/common.shared.Rd | 67 ++++++------ MESS-0.4-3/MESS/man/drop1.geeglm.Rd | 68 +++++------- MESS-0.4-3/MESS/man/earthquakes.Rd |only MESS-0.4-3/MESS/man/extended.shared.Rd |only MESS-0.4-3/MESS/man/fac2num.Rd |only MESS-0.4-3/MESS/man/feature.test.Rd | 113 +++++++++++++-------- MESS-0.4-3/MESS/man/filldown.Rd |only MESS-0.4-3/MESS/man/geekin.Rd | 101 +++++++++---------- MESS-0.4-3/MESS/man/gkgamma.Rd | 66 ++++++------ MESS-0.4-3/MESS/man/greenland.Rd | 44 +++----- MESS-0.4-3/MESS/man/happiness.Rd | 57 ++++++---- MESS-0.4-3/MESS/man/ht.Rd |only MESS-0.4-3/MESS/man/icecreamads.Rd |only MESS-0.4-3/MESS/man/kwdata.Rd |only MESS-0.4-3/MESS/man/lifeexpect.Rd |only MESS-0.4-3/MESS/man/lower.tri.vector.Rd | 52 ++++----- MESS-0.4-3/MESS/man/matched.Rd |only MESS-0.4-3/MESS/man/mfastLm_cpp.Rd |only MESS-0.4-3/MESS/man/nh4.Rd |only MESS-0.4-3/MESS/man/ordered.clusters.Rd | 44 +++----- MESS-0.4-3/MESS/man/panel.hist.Rd |only MESS-0.4-3/MESS/man/panel.r2.Rd |only MESS-0.4-3/MESS/man/picea.Rd |only MESS-0.4-3/MESS/man/power.binom.test.Rd | 73 +++++++------ MESS-0.4-3/MESS/man/power.mcnemar.test.Rd | 78 +++++++------- MESS-0.4-3/MESS/man/power.t.test.Rd |only MESS-0.4-3/MESS/man/qdiag.Rd |only MESS-0.4-3/MESS/man/qpcr.Rd | 56 ++++------ MESS-0.4-3/MESS/man/quadform.Rd |only MESS-0.4-3/MESS/man/rainman.Rd | 63 +++++------ MESS-0.4-3/MESS/man/repmat.Rd |only MESS-0.4-3/MESS/man/residualplot.Rd | 106 +++++++++++--------- MESS-0.4-3/MESS/man/rmvt.pedigree.Rd | 77 +++++++------- MESS-0.4-3/MESS/man/rmvtnorm.pedigree.Rd | 73 ++++++------- MESS-0.4-3/MESS/man/rootonorm.Rd | 158 ++++++++++++----------------- MESS-0.4-3/MESS/man/scorefct.Rd |only MESS-0.4-3/MESS/man/segregate.genes.Rd | 51 ++++----- MESS-0.4-3/MESS/man/sinv.Rd |only MESS-0.4-3/MESS/man/smokehealth.Rd |only MESS-0.4-3/MESS/man/soccer.Rd | 35 +++--- MESS-0.4-3/MESS/man/superroot2.Rd | 56 ++++------ MESS-0.4-3/MESS/man/tracemp.Rd |only MESS-0.4-3/MESS/man/wallyplot.Rd | 116 ++++++++++++--------- MESS-0.4-3/MESS/man/write.xml.Rd |only MESS-0.4-3/MESS/src |only 102 files changed, 2378 insertions(+), 1317 deletions(-)
Title: Fast Algorithms to Bootstrap Receiver Operating Characteristics
Curves
Description: Implements a very fast C++ algorithm to quickly bootstrap receiver
operating characteristics (ROC) curves and derived performance metrics,
including the area under the curve (AUC) and the partial area under the curve as well as
the true and false positive rate. The analysis of paired receiver operating curves is supported as well,
so that a comparison of two predictors is possible. You can also plot the
results and calculate confidence intervals. On a typical desktop computer the time needed for
the calculation of 100000 bootstrap replicates given 500 observations requires time on the
order of magnitude of one second.
Author: Erik Peter [aut, cre]
Maintainer: Erik Peter <jerikpeter@googlemail.com>
Diff between fbroc versions 0.3.1 dated 2015-10-12 and 0.4.0 dated 2016-06-21
DESCRIPTION | 24 ++++---- MD5 | 73 +++++++++++++------------- NAMESPACE | 2 NEWS.md |only R/fbroc.R | 12 ++-- R/fbroc.helper.functions.R | 115 ++++++++++++++++++++++++++++++++++++++++- R/fbroc.methods.R | 28 ++++++--- R/fbroc.paired.methods.R | 25 ++++++-- R/fbroc.perf.R | 51 +++++++++++++++--- R/perf.paired.roc.R | 50 ++++++++++++++--- README.md | 7 +- man/boot.paired.roc.Rd | 10 +-- man/boot.roc.Rd | 10 +-- man/boot.tpr.at.fpr.Rd | 6 +- man/conf.Rd | 6 +- man/conf.fbroc.paired.roc.Rd | 2 man/conf.fbroc.roc.Rd | 2 man/extract.roc.Rd | 8 +- man/fbroc.Rd | 23 ++++---- man/perf.Rd | 6 +- man/perf.fbroc.paired.roc.Rd | 57 +++++++++++++++++--- man/perf.fbroc.roc.Rd | 55 ++++++++++++++++--- man/plot.fbroc.conf.Rd | 10 +-- man/plot.fbroc.conf.paired.Rd | 10 +-- man/plot.fbroc.paired.roc.Rd | 29 +++++++--- man/plot.fbroc.perf.Rd | 2 man/plot.fbroc.perf.paired.Rd | 8 +- man/plot.fbroc.roc.Rd | 28 ++++++--- man/print.fbroc.perf.Rd | 2 man/print.fbroc.perf.paired.Rd | 4 - man/print.fbroc.roc.Rd | 2 man/roc.examples.Rd | 4 - src/interface.common.cpp | 2 src/interface.common.h | 2 src/performance.cpp | 83 +++++++++++++++++++++++++++++ src/performance.h | 2 src/sampler.cpp | 8 ++ src/sampler.h | 2 38 files changed, 587 insertions(+), 183 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for MTA
Description: Phase I/II adaptive dose-finding design for single-agent
Molecularly Targeted Agent (MTA), according to the paper "Phase
I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau
Determination using Adaptive Randomization" (in review).
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between dfmta versions 1.3-3 dated 2015-10-05 and 1.3-4 dated 2016-06-21
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- configure | 18 +++++++++--------- src/CppBugs/cppbugs/mcmc.math.hpp | 37 +++++-------------------------------- src/dfmta.cpp | 1 - 5 files changed, 24 insertions(+), 52 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for Combination Studies
Description: Phase I/II adaptive dose-finding design for combination
studies. Several methods are proposed depending on the type of
combinations: (1) the combination of two cytotoxic agents, and (2)
combination of a molecularly targeted agent with a cytotoxic agent.
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between dfcomb versions 2.1-5 dated 2015-10-05 and 2.1-6 dated 2016-06-21
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- configure | 24 ++++++++++++------------ configure.ac | 4 ++-- src/CppBugs/cppbugs/mcmc.math.hpp | 37 +++++-------------------------------- 5 files changed, 28 insertions(+), 55 deletions(-)
Title: Test Coverage for Packages
Description: Track and report code coverage for your package and (optionally)
upload the results to a coverage service like Codecov (http://codecov.io) or
Coveralls (http://coveralls.io). Code coverage is a measure of the amount of
code being exercised by the tests. It is an indirect measure of test quality.
This package is compatible with any testing methodology or framework and tracks
coverage of both R code and compiled C/C++/Fortran code.
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between covr versions 2.0.1 dated 2016-04-06 and 2.1.0 dated 2016-06-21
covr-2.0.1/covr/R/shiny.R |only covr-2.0.1/covr/man/shine.Rd |only covr-2.0.1/covr/tests/testthat/test-shine.R |only covr-2.1.0/covr/DESCRIPTION | 9 + covr-2.1.0/covr/MD5 | 45 +++++---- covr-2.1.0/covr/NAMESPACE | 6 - covr-2.1.0/covr/NEWS.md | 10 ++ covr-2.1.0/covr/R/R6.R |only covr-2.1.0/covr/R/codecov.R | 12 ++ covr-2.1.0/covr/R/covr.R | 99 +++++++++++++++----- covr-2.1.0/covr/R/exclusions.R | 21 +++- covr-2.1.0/covr/R/replace.R | 13 ++ covr-2.1.0/covr/R/report.R |only covr-2.1.0/covr/R/utils.R | 6 + covr-2.1.0/covr/R/vectorized.R |only covr-2.1.0/covr/R/zzz.R | 14 +- covr-2.1.0/covr/README.md | 1 covr-2.1.0/covr/build/vignette.rds |binary covr-2.1.0/covr/inst/www/shiny.css | 10 +- covr-2.1.0/covr/man/exclusions.Rd | 23 +++- covr-2.1.0/covr/man/file_coverage.Rd |only covr-2.1.0/covr/man/report.Rd |only covr-2.1.0/covr/tests/testthat/test-R6.R | 6 - covr-2.1.0/covr/tests/testthat/test-RC.R | 3 covr-2.1.0/covr/tests/testthat/test-codecov.R | 26 +++++ covr-2.1.0/covr/tests/testthat/test-file_coverage.R |only covr-2.1.0/covr/tests/testthat/test-memoised.R |only covr-2.1.0/covr/tests/testthat/test-report.R |only covr-2.1.0/covr/tests/testthat/test-report.htm |only covr-2.1.0/covr/tests/testthat/test-vectorized.R |only 30 files changed, 232 insertions(+), 72 deletions(-)
Title: Extensions of Exponential Random Graph Models
Description: Extensions of Exponential Random Graph Models (ERGM): Temporal Exponential Random Graph Models (TERGM), Generalized Exponential Random Graph Models (GERGM), Temporal Network Autocorrelation Models (TNAM), and Relational Event Models (REM).
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [aut],
Bruce A. Desmarais [aut]
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between xergm versions 1.7.0 dated 2016-02-21 and 1.7.3 dated 2016-06-21
DESCRIPTION | 22 +++++++++++++--------- MD5 | 8 ++++---- NAMESPACE | 1 + R/xergm.R | 4 ++-- man/xergm-package.Rd | 8 ++++---- 5 files changed, 24 insertions(+), 19 deletions(-)
Title: Fits a Non-Parametric Bayesian Source Attribution Model
Description: Implements a non-parametric source attribution model
to attribute cases of disease to sources in Bayesian framework with source and
type effects. Type effects are clustered using a Dirichlet Process. Multiple
times and locations are supported.
Author: Poppy Miller [aut, cre],
Chris Jewell [aut],
Jonathan Marshall [aut],
Nigel French [aut]
Maintainer: Poppy Miller <p.miller@lancaster.ac.uk>
Diff between sourceR versions 0.1.0 dated 2016-04-21 and 0.2.0 dated 2016-06-21
DESCRIPTION | 26 ++++-- MD5 | 63 ++++++++++++-- NAMESPACE | 11 +- R/MCMC_loop.R | 55 ++++++++---- R/calc_niter.R |only R/check_input.R | 126 +++++++++++++++++++---------- R/flatten.R |only R/heatmap_types.R |only R/subset_posterior.R |only R/summary.R | 34 ++++---- README.md |only build |only inst |only man/flatten.Rd |only man/heatmap_types.Rd |only man/saBayes.Rd | 204 ++++++++++++++++++++++++++++++++++++------------ man/sim_SA.Rd | 3 man/sim_SA_true.Rd | 9 +- man/subset_posterior.Rd |only man/summary.Rd | 56 +++++++++---- vignettes |only 21 files changed, 422 insertions(+), 165 deletions(-)
Title: Search Contributed R Packages, Sort by Package
Description: Search contributed R packages, sort by package.
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Maintainer: Spencer Graves <spencer.graves@prodsyse.com>
Diff between sos versions 1.3-8 dated 2013-09-25 and 1.3-9 dated 2016-06-21
DESCRIPTION | 14 +- MD5 | 38 +++---- NAMESPACE | 5 R/PackageSum2.R | 258 +++++++++++++++++++++++++------------------------- R/findFn.R | 2 R/installPackages.R | 58 +++++------ R/print.findFn.R | 4 R/writeFindFn2xls.R | 10 - build/vignette.rds |binary inst/doc/sos.R | 22 ++-- inst/doc/sos.Rnw | 29 ++++- inst/doc/sos.pdf |binary man/PackageSum2.Rd | 80 ++++++++------- man/PackageSummary.Rd | 34 +++--- man/findFn.Rd | 21 ++-- man/grepFn.Rd | 4 man/print.findFn.Rd | 31 +++--- man/summary.findFn.Rd | 59 ++++++----- man/unionFindFn.Rd | 10 + vignettes/sos.Rnw | 29 ++++- 20 files changed, 386 insertions(+), 322 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more. This package supports labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.0.0 dated 2016-05-18 and 2.0.1 dated 2016-06-21
DESCRIPTION | 18 MD5 | 120 - NAMESPACE | 363 +-- NEWS | 574 ++--- NEWS.md | 35 R/helpfunctions.R | 52 R/sjPlotAncovaLSMeans.R | 725 +++---- R/sjPlotAnova.R | 586 ++--- R/sjPlotClusterAnalysis.R | 1708 ++++++++-------- R/sjPlotCorr.R | 670 +++--- R/sjPlotFrequencies.R | 5 R/sjPlotGLME.R | 4643 ++++++++++++++++++++++----------------------- R/sjPlotGroupFrequencies.R | 1582 +++++++-------- R/sjPlotGroupPropTable.R | 522 ++--- R/sjPlotInteractions.R | 50 R/sjPlotLikert.R | 1235 ++++++----- R/sjPlotLinreg.R | 2568 ++++++++++++------------ R/sjPlotLinregMultiple.R | 868 ++++---- R/sjPlotOdds.R | 2266 +++++++++++---------- R/sjPlotOddsMultiple.R | 843 ++++---- R/sjPlotPCA.R | 775 +++---- R/sjPlotPearsonsChi2Test.R | 265 +- R/sjPlotPolynomials.R | 540 ++--- R/sjPlotPropTable.R | 953 ++++----- R/sjPlotScatter.R | 730 +++---- R/sjPlotStackFrequencies.R | 769 +++---- R/sjTabCorr.R | 7 R/sjTabFrequencies.R | 27 R/sjTabGrpmean.R | 409 +-- R/sjTabItemAnalysis.R | 20 R/sjTabLinReg.R | 82 R/sjTabMannWhitney.R | 172 - R/sjTabOdds.R | 343 +-- R/sjTabPCA.R | 2 R/sjTabPropTable.R | 24 R/sjTabSPSS.R | 14 R/sjTabStackFrq.R | 6 R/table_functions.R | 4 README.md | 4 build/partial.rdb |binary inst/CITATION | 18 man/adjust_plot_range.Rd | 4 man/sjPlot-package.Rd | 4 man/sjp.aov1.Rd | 11 man/sjp.frq.Rd | 5 man/sjp.glm.Rd | 15 man/sjp.glmer.Rd | 49 man/sjp.glmm.Rd | 15 man/sjp.gpt.Rd | 6 man/sjp.int.Rd | 14 man/sjp.lm.Rd | 23 man/sjp.lmer.Rd | 53 man/sjp.lmm.Rd | 15 man/sjp.poly.Rd | 15 man/sjt.glm.Rd | 62 man/sjt.glmer.Rd | 33 man/sjt.itemanalysis.Rd | 360 +-- man/sjt.lm.Rd | 14 man/sjt.lmer.Rd | 16 man/sjt.mwu.Rd | 6 man/sjt.stackfrq.Rd | 14 61 files changed, 12858 insertions(+), 12473 deletions(-)
Title: Environment for Assessing Recommender Systems
Description: Provides implementations of several popular recommendation systems. They can process standard recommendation datasets (user/item matrix) as input and generate rating predictions and recommendation lists. Standard algorithm implementations included in this package are: Global/Item/User-Average baselines, Item-Based KNN, FunkSVD, BPR and weighted ALS. They can be assessed according to the standard offline evaluation methodology for recommender systems using measures such as MAE, RMSE, Precision, Recall, AUC, NDCG, RankScore and coverage measures. The package is intended for rapid prototyping of recommendation algorithms and education purposes.
Author: Ludovik Çoba [aut, cre, cph],
Markus Zanker [ctb]
Maintainer: Ludovik Çoba <lcoba@unishk.edu.al>
Diff between rrecsys versions 0.9.5.1 dated 2016-06-14 and 0.9.5.3 dated 2016-06-21
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/evalPred.R | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Building Augmented Data to Run Multi-State Models with 'msm'
Package
Description: A fast and general method for restructuring classical longitudinal data into
augmented ones. The reason for this is to facilitate the modeling of longitudinal data under
a multi-state framework using the 'msm' package.
Author: Francesco Grossetti [aut, cre]
Maintainer: Francesco Grossetti <francesco.grossetti@polimi.it>
Diff between msmtools versions 1.1 dated 2016-05-04 and 1.2 dated 2016-06-21
msmtools-1.1/msmtools/tests/testthat/test_augment.R |only msmtools-1.1/msmtools/vignettes/msmtools.html |only msmtools-1.2/msmtools/DESCRIPTION | 12 msmtools-1.2/msmtools/MD5 | 37 msmtools-1.2/msmtools/NEWS.md |only msmtools-1.2/msmtools/R/augment.R | 502 ++++++++----- msmtools-1.2/msmtools/R/msmtools.R | 10 msmtools-1.2/msmtools/R/onAttach.R | 2 msmtools-1.2/msmtools/R/prevplot.R | 16 msmtools-1.2/msmtools/R/survplot.R | 126 ++- msmtools-1.2/msmtools/README.md | 8 msmtools-1.2/msmtools/build/vignette.rds |binary msmtools-1.2/msmtools/inst/doc/msmtools.Rmd | 99 +- msmtools-1.2/msmtools/inst/doc/msmtools.pdf |binary msmtools-1.2/msmtools/man/augment.Rd | 130 ++- msmtools-1.2/msmtools/man/msmtools.Rd | 10 msmtools-1.2/msmtools/man/prevplot.Rd | 16 msmtools-1.2/msmtools/man/survplot.Rd | 98 +- msmtools-1.2/msmtools/tests/testthat/test_dataset_return.R | 51 + msmtools-1.2/msmtools/vignettes/msmtools.Rmd | 99 +- msmtools-1.2/msmtools/vignettes/references.bib | 14 21 files changed, 798 insertions(+), 432 deletions(-)
Title: Selection of Statistically Similar Research Groups
Description: Select statistically similar research groups by backward selection using various robust algorithms, including a heuristic based on linear discriminant analysis, multiple heuristics based on the test statistic, and parallelized exhaustive search.
Author: Kyle Gorman [aut, cre],
Geza Kiss [aut]
Maintainer: Kyle Gorman <kylebgorman@gmail.com>
Diff between ldamatch versions 0.6.3 dated 2015-08-26 and 1.0.0 dated 2016-06-21
ldamatch-0.6.3/ldamatch/R/search_heuristic.R |only ldamatch-0.6.3/ldamatch/R/search_montecarlo.R |only ldamatch-0.6.3/ldamatch/man/GUtils.Rd |only ldamatch-0.6.3/ldamatch/man/U_crit.Rd |only ldamatch-0.6.3/ldamatch/man/ad_crit.Rd |only ldamatch-0.6.3/ldamatch/man/apply_crit.Rd |only ldamatch-0.6.3/ldamatch/man/check_subspaces_for_group_size_setup.Rd |only ldamatch-0.6.3/ldamatch/man/combine_ratios.Rd |only ldamatch-0.6.3/ldamatch/man/create_Cartesian_iterable.Rd |only ldamatch-0.6.3/ldamatch/man/create_subject_subspace_using_LDA.Rd |only ldamatch-0.6.3/ldamatch/man/decrease_group_sizes.Rd |only ldamatch-0.6.3/ldamatch/man/get_human_readable.Rd |only ldamatch-0.6.3/ldamatch/man/ks_crit.Rd |only ldamatch-0.6.3/ldamatch/man/search_heuristic.Rd |only ldamatch-0.6.3/ldamatch/man/search_montecarlo.Rd |only ldamatch-0.6.3/ldamatch/man/t_crit.Rd |only ldamatch-1.0.0/ldamatch/DESCRIPTION | 22 ldamatch-1.0.0/ldamatch/LICENSE | 2 ldamatch-1.0.0/ldamatch/MD5 | 88 +- ldamatch-1.0.0/ldamatch/NAMESPACE | 26 ldamatch-1.0.0/ldamatch/R/estimate_exhaustive.R | 137 ++- ldamatch-1.0.0/ldamatch/R/evaluation.R |only ldamatch-1.0.0/ldamatch/R/globals.R | 14 ldamatch-1.0.0/ldamatch/R/halting_tests.R | 417 ++++++++- ldamatch-1.0.0/ldamatch/R/helpers.R | 143 +++ ldamatch-1.0.0/ldamatch/R/ldamatch.R | 424 +++++++--- ldamatch-1.0.0/ldamatch/R/search_exhaustive.R | 286 ++++-- ldamatch-1.0.0/ldamatch/R/search_heuristic1.R |only ldamatch-1.0.0/ldamatch/R/search_heuristic2.R |only ldamatch-1.0.0/ldamatch/R/search_heuristic3.R |only ldamatch-1.0.0/ldamatch/R/search_heuristic4.R |only ldamatch-1.0.0/ldamatch/R/search_random.R |only ldamatch-1.0.0/ldamatch/build/vignette.rds |binary ldamatch-1.0.0/ldamatch/inst/doc/ldamatch-demos.R | 47 - ldamatch-1.0.0/ldamatch/inst/doc/ldamatch-demos.Rmd | 73 + ldamatch-1.0.0/ldamatch/inst/doc/ldamatch-demos.html | 346 +++++--- ldamatch-1.0.0/ldamatch/man/U_halt.Rd | 18 ldamatch-1.0.0/ldamatch/man/ad_halt.Rd | 18 ldamatch-1.0.0/ldamatch/man/calc_metrics.Rd |only ldamatch-1.0.0/ldamatch/man/calc_p_value.Rd |only ldamatch-1.0.0/ldamatch/man/compare_ldamatch_outputs.Rd |only ldamatch-1.0.0/ldamatch/man/create_halting_test.Rd | 38 ldamatch-1.0.0/ldamatch/man/estimate_exhaustive.Rd | 45 - ldamatch-1.0.0/ldamatch/man/f_halt.Rd |only ldamatch-1.0.0/ldamatch/man/get_param.Rd | 2 ldamatch-1.0.0/ldamatch/man/ks_halt.Rd | 27 ldamatch-1.0.0/ldamatch/man/l_halt.Rd |only ldamatch-1.0.0/ldamatch/man/ldamatch.Rd | 62 - ldamatch-1.0.0/ldamatch/man/match_groups.Rd |only ldamatch-1.0.0/ldamatch/man/search_exhaustive.Rd | 82 + ldamatch-1.0.0/ldamatch/man/search_heuristic1.Rd |only ldamatch-1.0.0/ldamatch/man/search_heuristic2.Rd |only ldamatch-1.0.0/ldamatch/man/search_heuristic3.Rd |only ldamatch-1.0.0/ldamatch/man/search_heuristic4.Rd |only ldamatch-1.0.0/ldamatch/man/search_random.Rd |only ldamatch-1.0.0/ldamatch/man/set_param.Rd | 4 ldamatch-1.0.0/ldamatch/man/t_halt.Rd | 18 ldamatch-1.0.0/ldamatch/man/wilks_halt.Rd | 18 ldamatch-1.0.0/ldamatch/tests |only ldamatch-1.0.0/ldamatch/vignettes/ldamatch-demos.Rmd | 73 + 60 files changed, 1719 insertions(+), 711 deletions(-)
Title: Post-Processing of the Markov Chain Simulated by ChronoModel or
Oxcal
Description: Provides a list of functions for the statistical analysis and the post-processing of the Markov Chains simulated by ChronoModel (see <http://www.chronomodel.fr> for more information). ChronoModel is a friendly software to construct a chronological model in a Bayesian framework. Its output is a sampled Markov chain from the posterior distribution of dates component the chronology. The functions can also be applied to the analyse of mcmc output generated by Oxcal software.
Author: Anne Philippe and Marie-Anne Vibet
Maintainer: Anne Philippe <anne.philippe@univ-nantes.fr>
Diff between RChronoModel versions 0.1 dated 2016-05-09 and 0.2 dated 2016-06-21
DESCRIPTION | 15 MD5 | 24 NAMESPACE | 49 - R/prog.R | 1945 +++++++++++++++++++++---------------------- man/ImportCSV.Rd |only man/MarginalStatistics.Rd | 8 man/MultiCredibleInterval.Rd | 15 man/MultiPhasePlot.Rd | 28 man/MultiPhaseTimeRange.Rd | 29 man/MultiPhasesGap.Rd | 29 man/MultiPhasesTransition.Rd | 32 man/MultiSuccessionPlot.Rd | 35 man/PhaseDurationPlot.Rd |only man/SuccessionPlot.Rd | 4 14 files changed, 1141 insertions(+), 1072 deletions(-)
Title: Fast Principal Component Analysis for Outlier Detection
Description: Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis.
Author: Keurcien Luu, Michael G.B. Blum, Nicolas Duforet-Frebourg
Maintainer: Keurcien Luu <keurcien.luu@imag.fr>
Diff between pcadapt versions 3.0.1 dated 2016-06-14 and 3.0.2 dated 2016-06-21
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ inst/doc/pcadapt.R | 4 +++ inst/doc/pcadapt.Rmd | 38 ++++++++++++++++++++++++++----------- inst/doc/pcadapt.html | 50 ++++++++++++++++++++++++++++++++++++------------- man/pcadapt-package.Rd | 4 +-- vignettes/pcadapt.Rmd | 7 ++++-- 7 files changed, 85 insertions(+), 38 deletions(-)
Title: Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Description: Enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine the activity of a site (and as an alternative to the Oxcal function SUM). The package includes a vignette which can be accessed via the vignette.
Author: Andrew Parnell
Maintainer: Andrew Parnell <Andrew.Parnell@ucd.ie>
Diff between Bchron versions 4.2.1 dated 2016-06-05 and 4.2.2 dated 2016-06-21
DESCRIPTION | 8 - MD5 | 8 - R/plot.BchronCalibratedDates.R | 51 ++++++--- inst/doc/Bchron.html | 212 ++++++++++++++++++++------------------ man/plot.BchronCalibratedDates.Rd | 22 +-- 5 files changed, 172 insertions(+), 129 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from
'SPSS' or 'Stata' with 'haven' or 'foreign'.
Author: Joseph Larmarange [aut, cre],
Daniel Ludecke [ctb],
Hadley Wickham [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 0.2.2 dated 2016-06-14 and 0.2.3 dated 2016-06-21
labelled-0.2.2/labelled/R/setattr.R |only labelled-0.2.2/labelled/tests/testthat/labelled-output.txt |only labelled-0.2.3/labelled/DESCRIPTION | 10 - labelled-0.2.3/labelled/MD5 | 36 +--- labelled-0.2.3/labelled/NAMESPACE | 11 + labelled-0.2.3/labelled/NEWS.md | 10 + labelled-0.2.3/labelled/R/labelled.R | 15 - labelled-0.2.3/labelled/R/remove_labels.R | 46 ++++- labelled-0.2.3/labelled/R/to_character.R | 1 labelled-0.2.3/labelled/R/to_labelled.R | 24 +- labelled-0.2.3/labelled/R/val_labels.R | 75 ++++++++ labelled-0.2.3/labelled/R/var_label.R | 34 +++ labelled-0.2.3/labelled/inst/doc/intro_labelled.R | 36 ++++ labelled-0.2.3/labelled/inst/doc/intro_labelled.Rmd | 48 +++++ labelled-0.2.3/labelled/inst/doc/intro_labelled.html | 116 +++++++++++++ labelled-0.2.3/labelled/man/remove_labels.Rd | 26 ++ labelled-0.2.3/labelled/man/val_labels.Rd | 39 ++++ labelled-0.2.3/labelled/man/var_label.Rd | 23 ++ labelled-0.2.3/labelled/tests/testthat/test-labelled.r | 78 +++++++- labelled-0.2.3/labelled/vignettes/intro_labelled.Rmd | 48 +++++ 20 files changed, 610 insertions(+), 66 deletions(-)
Title: Functions for Community Data and Ordinations
Description: A collection of functions useful in (vegetation) community analyses and ordinations, mainly to facilitate plotting and interpretation. Includes automatic species selection for ordination diagrams, species response curves and rank-abundance curves.
Author: Friedemann Goral [aut, cre],
Jenny Schellenberg [aut]
Maintainer: Friedemann Goral <fgoral@gwdg.de>
Diff between goeveg versions 0.1.6 dated 2016-06-14 and 0.2.0 dated 2016-06-21
DESCRIPTION | 8 ++--- MD5 | 14 +++++----- NAMESPACE | 3 +- NEWS.md | 8 +++++ R/racurve.r | 75 ++++++++++++++++++++++++++++++++++++++++++++------------ R/racurves.r | 7 +++-- man/racurve.Rd | 27 ++++++++++++++++---- man/racurves.Rd | 7 +++-- 8 files changed, 112 insertions(+), 37 deletions(-)
Title: Temporal Network Autocorrelation Models (TNAM)
Description: Temporal and cross-sectional network autocorrelation models (TNAM).
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [ctb]
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between tnam versions 1.6 dated 2015-12-14 and 1.6.2 dated 2016-06-21
DESCRIPTION | 20 ++++++++++++-------- MD5 | 8 ++++---- R/checkDataTypes.R | 5 ++--- R/tnam.R | 2 +- man/tnam-package.Rd | 2 +- 5 files changed, 20 insertions(+), 17 deletions(-)
Title: Conversion of R Regression Output to LaTeX or HTML Tables
Description: Converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented.
Author: Philip Leifeld
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between texreg versions 1.36.4 dated 2016-02-19 and 1.36.7 dated 2016-06-21
texreg-1.36.4/texreg/inst/doc/v55i08.R |only texreg-1.36.4/texreg/inst/doc/v55i08.Rnw |only texreg-1.36.4/texreg/inst/doc/v55i08.pdf |only texreg-1.36.4/texreg/vignettes/v55i08.Rnw |only texreg-1.36.4/texreg/vignettes/v55i08.bib |only texreg-1.36.7/texreg/DESCRIPTION | 23 ++++----- texreg-1.36.7/texreg/MD5 | 26 +++++----- texreg-1.36.7/texreg/NAMESPACE | 2 texreg-1.36.7/texreg/R/extract.R | 76 +++++++++++++++++++++++++++++- texreg-1.36.7/texreg/R/internal.R | 8 +-- texreg-1.36.7/texreg/R/texreg.R | 2 texreg-1.36.7/texreg/build/vignette.rds |binary texreg-1.36.7/texreg/inst/doc/texreg.R |only texreg-1.36.7/texreg/inst/doc/texreg.Rnw |only texreg-1.36.7/texreg/inst/doc/texreg.pdf |only texreg-1.36.7/texreg/man/extract.Rd | 22 ++++++++ texreg-1.36.7/texreg/man/texreg.Rd | 2 texreg-1.36.7/texreg/vignettes/texreg.Rnw |only texreg-1.36.7/texreg/vignettes/texreg.bib |only 19 files changed, 131 insertions(+), 30 deletions(-)
Title: Phylogenetic Analysis in R
Description: Phylogenetic analysis in R: Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
distance methods and Hadamard conjugation.
Author: Klaus Schliep [aut, cre],
Emmanuel Paradis [aut],
Alastair Potts [aut],
Michelle Kendall [ctb]
Maintainer: Klaus Schliep <klaus.schliep@gmail.com>
Diff between phangorn versions 2.0.3 dated 2016-04-30 and 2.0.4 dated 2016-06-21
DESCRIPTION | 16 +- MD5 | 87 +++++----- NAMESPACE | 4 NEWS | 20 ++ R/Coalescent.R | 2 R/Densi.R | 8 - R/ancestral_pml.R | 4 R/bootstrap.R | 100 +++--------- R/cladePar.R | 2 R/clanistic.R | 18 +- R/distTree.R | 85 ++++++++++ R/fitch.R | 12 - R/modelTest.R | 30 +-- R/networx.R | 67 ++++++-- R/parsimony.R | 28 +-- R/phyDat.R | 12 - R/phylo.R | 52 +++--- R/sankoff.R | 4 R/simSeq.R | 6 R/treeManipulation.R | 232 ----------------------------- R/treedist.R | 219 +++++++++++++++++++++++++-- build/vignette.rds |binary inst/doc/Ancestral.pdf |binary inst/doc/IntertwiningTreesAndNetworks.html | 149 ++++++++++-------- inst/doc/Networx.html | 129 ++++++++++------ inst/doc/Trees.pdf |binary inst/doc/phangorn-specials.R | 4 inst/doc/phangorn-specials.Rnw | 3 inst/doc/phangorn-specials.pdf |binary man/allTrees.Rd | 2 man/ancestral.pml.Rd | 2 man/bootstrap.pml.Rd | 5 man/cophenetic.networx.Rd | 4 man/delta.score.Rd | 4 man/dist.hamming.Rd | 4 man/dist.p.Rd | 4 man/phangorn-package.Rd | 1 man/pml.Rd | 26 +-- man/pml.fit.Rd | 8 - man/treedist.Rd | 30 +++ src/phangorn.c | 109 +------------ tests/testthat/test_treeManipulation.R |only tests/testthat/test_treedist.R | 41 ++++- vignettes/phangorn-specials.Rnw | 3 vignettes/phangorn.bib | 37 ++++ 45 files changed, 842 insertions(+), 731 deletions(-)
Title: Evaluation of Modeling without Information Leakage
Description: A toolbox for designing and evaluating predictive models with
resampling methods. The aim of this package is to provide a simple and
efficient general framework for working with any type of prediction
problem, be it classification, regression or survival analysis, that is
easy to extend and adapt to your specific setting. Some commonly used
methods for classification, regression and survival analysis are included.
Author: Christofer Backlin [aut, cre],
Mats Gustafsson [aut]
Maintainer: Christofer Backlin <emil@christofer.backlin.se>
Diff between emil versions 2.2.3 dated 2015-11-19 and 2.2.6 dated 2016-06-21
emil-2.2.3/emil/tests/test-all.r |only emil-2.2.6/emil/DESCRIPTION | 13 - emil-2.2.6/emil/MD5 | 206 +++++++++++----------- emil-2.2.6/emil/NAMESPACE | 2 emil-2.2.6/emil/NEWS.md | 4 emil-2.2.6/emil/R/learning-curve.r | 2 emil-2.2.6/emil/R/pamr.r | 7 emil-2.2.6/emil/R/preprocessing.r | 2 emil-2.2.6/emil/R/resampling.r | 9 emil-2.2.6/emil/R/survival.r | 83 ++++---- emil-2.2.6/emil/man/as.modeling_procedure.Rd | 2 emil-2.2.6/emil/man/dichotomize.Rd | 2 emil-2.2.6/emil/man/error_fun.Rd | 2 emil-2.2.6/emil/man/evaluate.Rd | 2 emil-2.2.6/emil/man/factor_to_logical.Rd | 8 emil-2.2.6/emil/man/fill.Rd | 2 emil-2.2.6/emil/man/fit.Rd | 2 emil-2.2.6/emil/man/fit_caret.Rd | 2 emil-2.2.6/emil/man/fit_cforest.Rd | 2 emil-2.2.6/emil/man/fit_coxph.Rd | 23 +- emil-2.2.6/emil/man/fit_glmnet.Rd | 2 emil-2.2.6/emil/man/fit_lda.Rd | 2 emil-2.2.6/emil/man/fit_lm.Rd | 2 emil-2.2.6/emil/man/fit_naive_bayes.Rd | 2 emil-2.2.6/emil/man/fit_pamr.Rd | 4 emil-2.2.6/emil/man/fit_qda.Rd | 2 emil-2.2.6/emil/man/fit_randomForest.Rd | 2 emil-2.2.6/emil/man/fit_rpart.Rd | 2 emil-2.2.6/emil/man/fit_svm.Rd | 2 emil-2.2.6/emil/man/get_color.Rd | 2 emil-2.2.6/emil/man/get_importance.Rd | 2 emil-2.2.6/emil/man/get_performance.Rd | 2 emil-2.2.6/emil/man/get_prediction.Rd | 2 emil-2.2.6/emil/man/get_response.Rd | 2 emil-2.2.6/emil/man/get_tuning.Rd | 2 emil-2.2.6/emil/man/image.resample.Rd | 2 emil-2.2.6/emil/man/importance_glmnet.Rd | 2 emil-2.2.6/emil/man/importance_pamr.Rd | 2 emil-2.2.6/emil/man/importance_randomForest.Rd | 2 emil-2.2.6/emil/man/impute.Rd | 2 emil-2.2.6/emil/man/indent.Rd | 2 emil-2.2.6/emil/man/index_fit.Rd | 2 emil-2.2.6/emil/man/is_blank.Rd | 2 emil-2.2.6/emil/man/is_constant.Rd | 2 emil-2.2.6/emil/man/is_multi_procedure.Rd | 2 emil-2.2.6/emil/man/learning_curve.Rd | 4 emil-2.2.6/emil/man/list_method.Rd | 2 emil-2.2.6/emil/man/log_message.Rd | 2 emil-2.2.6/emil/man/mode.Rd | 2 emil-2.2.6/emil/man/modeling_procedure.Rd | 13 - emil-2.2.6/emil/man/na_index.Rd | 2 emil-2.2.6/emil/man/name_procedure.Rd | 2 emil-2.2.6/emil/man/neg_gmpa.Rd | 2 emil-2.2.6/emil/man/nice_axis.Rd | 2 emil-2.2.6/emil/man/nice_box.Rd | 2 emil-2.2.6/emil/man/nice_require.Rd | 2 emil-2.2.6/emil/man/notify_once.Rd | 2 emil-2.2.6/emil/man/pipe.Rd | 2 emil-2.2.6/emil/man/plot.Surv.Rd | 2 emil-2.2.6/emil/man/plot.learning_curve.Rd | 2 emil-2.2.6/emil/man/pre_factor_to_logical.Rd | 4 emil-2.2.6/emil/man/pre_impute.Rd | 2 emil-2.2.6/emil/man/pre_impute_df.Rd | 4 emil-2.2.6/emil/man/pre_impute_knn.Rd | 8 emil-2.2.6/emil/man/pre_log_message.Rd | 2 emil-2.2.6/emil/man/pre_pamr.Rd | 2 emil-2.2.6/emil/man/pre_process.Rd | 4 emil-2.2.6/emil/man/predict.model.Rd | 2 emil-2.2.6/emil/man/predict_caret.Rd | 4 emil-2.2.6/emil/man/predict_cforest.Rd | 2 emil-2.2.6/emil/man/predict_coxph.Rd | 2 emil-2.2.6/emil/man/predict_glmnet.Rd | 2 emil-2.2.6/emil/man/predict_lda.Rd | 2 emil-2.2.6/emil/man/predict_lm.Rd | 2 emil-2.2.6/emil/man/predict_naive_bayes.Rd | 2 emil-2.2.6/emil/man/predict_pamr.Rd | 2 emil-2.2.6/emil/man/predict_qda.Rd | 2 emil-2.2.6/emil/man/predict_randomForest.Rd | 2 emil-2.2.6/emil/man/predict_rpart.Rd | 2 emil-2.2.6/emil/man/predict_svm.Rd | 2 emil-2.2.6/emil/man/print.preprocessed_data.Rd | 2 emil-2.2.6/emil/man/pvalue.Rd | 2 emil-2.2.6/emil/man/pvalue.coxph.Rd | 2 emil-2.2.6/emil/man/pvalue.crr.Rd | 21 +- emil-2.2.6/emil/man/pvalue.cuminc.Rd | 2 emil-2.2.6/emil/man/pvalue.survdiff.Rd | 19 +- emil-2.2.6/emil/man/resample.Rd | 2 emil-2.2.6/emil/man/roc_curve.Rd | 2 emil-2.2.6/emil/man/select.Rd | 4 emil-2.2.6/emil/man/subresample.Rd | 2 emil-2.2.6/emil/man/subtree.Rd | 2 emil-2.2.6/emil/man/trivial_error_rate.Rd | 2 emil-2.2.6/emil/man/tune.Rd | 2 emil-2.2.6/emil/man/validate_data.Rd | 2 emil-2.2.6/emil/man/vlines.Rd | 2 emil-2.2.6/emil/man/weighted_error_rate.Rd | 2 emil-2.2.6/emil/tests/testthat.R |only emil-2.2.6/emil/tests/testthat/test-cppfunction.r | 2 emil-2.2.6/emil/tests/testthat/test-extractors.r | 11 - emil-2.2.6/emil/tests/testthat/test-helpers.r | 7 emil-2.2.6/emil/tests/testthat/test-methods.r | 33 ++- emil-2.2.6/emil/tests/testthat/test-modeling.r | 48 ++--- emil-2.2.6/emil/tests/testthat/test-preprocess.r | 110 ++++++----- emil-2.2.6/emil/tests/testthat/test-procedure.r | 6 emil-2.2.6/emil/tests/testthat/test-survival.r | 4 105 files changed, 432 insertions(+), 383 deletions(-)