Title: Infrastructure for Running and Cycling Data from GPS-Enabled
Tracking Devices
Description: The aim of this package is to provide infrastructure for handling running and cycling
data from GPS-enabled tracking devices. After extraction and appropriate
manipulation of the training or competition attributes, the data are placed
into session-based and unit-aware data objects of class trackeRdata (S3 class). The
information in the resulting data objects can then be visualised, summarised,
and analysed through corresponding flexible and extensible methods.
Author: Hannah Frick [aut, cre],
Ioannis Kosmidis [aut]
Maintainer: Hannah Frick <h.frick@ucl.ac.uk>
Diff between trackeR versions 0.0.1 dated 2016-02-11 and 0.0.3 dated 2016-06-23
trackeR-0.0.1/trackeR/README.md |only trackeR-0.0.3/trackeR/DESCRIPTION | 21 - trackeR-0.0.3/trackeR/MD5 | 111 +++-- trackeR-0.0.3/trackeR/NAMESPACE | 20 trackeR-0.0.3/trackeR/NEWS |only trackeR-0.0.3/trackeR/R/Wprime.R | 17 trackeR-0.0.3/trackeR/R/concentrationProfile.R | 53 +- trackeR-0.0.3/trackeR/R/data.R | 2 trackeR-0.0.3/trackeR/R/distributionProfile.R | 90 +++- trackeR-0.0.3/trackeR/R/funcPCA.R |only trackeR-0.0.3/trackeR/R/imputeSpeeds.R | 82 ++-- trackeR-0.0.3/trackeR/R/read.R | 389 ++++++++++++++----- trackeR-0.0.3/trackeR/R/thresholds.R | 2 trackeR-0.0.3/trackeR/R/trackeR.R | 58 ++ trackeR-0.0.3/trackeR/R/trackeRdata.R | 137 +++++- trackeR-0.0.3/trackeR/R/trackeRdata_plot.R | 338 +++++++++++++--- trackeR-0.0.3/trackeR/R/trackeRdata_smoother.R | 2 trackeR-0.0.3/trackeR/R/trackeRdata_summary.R | 80 +++ trackeR-0.0.3/trackeR/R/trackeRdata_zones.R | 10 trackeR-0.0.3/trackeR/R/units.R | 4 trackeR-0.0.3/trackeR/build/vignette.rds |binary trackeR-0.0.3/trackeR/data/run.rda |binary trackeR-0.0.3/trackeR/data/runs.rda |binary trackeR-0.0.3/trackeR/inst/doc/TourDetrackeR.Rmd |only trackeR-0.0.3/trackeR/inst/doc/TourDetrackeR.html |only trackeR-0.0.3/trackeR/inst/doc/trackeR.R | 122 ++--- trackeR-0.0.3/trackeR/inst/doc/trackeR.Rnw | 198 +++++---- trackeR-0.0.3/trackeR/inst/doc/trackeR.pdf |binary trackeR-0.0.3/trackeR/inst/icons |only trackeR-0.0.3/trackeR/man/GC2trackeRdata.Rd |only trackeR-0.0.3/trackeR/man/Wprime.Rd | 2 trackeR-0.0.3/trackeR/man/concentrationProfile.Rd | 2 trackeR-0.0.3/trackeR/man/distance2speed.Rd | 4 trackeR-0.0.3/trackeR/man/distributionProfile.Rd | 10 trackeR-0.0.3/trackeR/man/funPCA.Rd |only trackeR-0.0.3/trackeR/man/imputeSpeeds.Rd | 4 trackeR-0.0.3/trackeR/man/leafletRoute.Rd |only trackeR-0.0.3/trackeR/man/nsessions.Rd |only trackeR-0.0.3/trackeR/man/plot.conProfile.Rd | 2 trackeR-0.0.3/trackeR/man/plot.distrProfile.Rd | 2 trackeR-0.0.3/trackeR/man/plot.trackeRdata.Rd | 2 trackeR-0.0.3/trackeR/man/plot.trackeRdataSummary.Rd | 6 trackeR-0.0.3/trackeR/man/plot.trackeRdataZones.Rd | 2 trackeR-0.0.3/trackeR/man/plot.trackeRfpca.Rd |only trackeR-0.0.3/trackeR/man/plotRoute.Rd | 14 trackeR-0.0.3/trackeR/man/profile2fd.Rd |only trackeR-0.0.3/trackeR/man/readContainer.Rd | 17 trackeR-0.0.3/trackeR/man/readDirectory.Rd | 23 - trackeR-0.0.3/trackeR/man/readX.Rd | 16 trackeR-0.0.3/trackeR/man/runs.Rd | 2 trackeR-0.0.3/trackeR/man/scaled.Rd |only trackeR-0.0.3/trackeR/man/scaled.distrProfile.Rd |only trackeR-0.0.3/trackeR/man/smoother.trackeRdata.Rd | 2 trackeR-0.0.3/trackeR/man/speed2distance.Rd | 4 trackeR-0.0.3/trackeR/man/summary.trackeRdata.Rd | 2 trackeR-0.0.3/trackeR/man/threshold.Rd | 2 trackeR-0.0.3/trackeR/man/timeline.Rd |only trackeR-0.0.3/trackeR/man/trackeR.Rd | 16 trackeR-0.0.3/trackeR/man/trackeRdata.Rd | 4 trackeR-0.0.3/trackeR/man/zones.Rd | 2 trackeR-0.0.3/trackeR/vignettes/TourDetrackeR.Rmd |only trackeR-0.0.3/trackeR/vignettes/plotRoute.pdf |only trackeR-0.0.3/trackeR/vignettes/trackeR.Rnw | 198 +++++---- trackeR-0.0.3/trackeR/vignettes/trackeR.bib | 40 + 64 files changed, 1523 insertions(+), 591 deletions(-)
Title: Learn R, in R
Description: Use the R console as an interactive learning
environment. Users receive immediate feedback as they are guided through
self-paced lessons in data science and R programming.
Author: Sean Kross [aut, cre],
Nick Carchedi [aut],
Bill Bauer [aut],
Gina Grdina [aut],
Filip Schouwenaars [ctb],
Wush Wu [ctb]
Maintainer: Sean Kross <sean@seankross.com>
Diff between swirl versions 2.4.1 dated 2016-04-14 and 2.4.2 dated 2016-06-23
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NAMESPACE | 1 - NEWS.md | 4 ++++ R/global.R |only R/swirl.R | 1 - README.md | 53 ++++++++++++++++++++++++++++++++++++++++------------- 7 files changed, 56 insertions(+), 26 deletions(-)
Title: Signal-Noise Separation in Random Matrices by using Eigenvalue
Spectrum Analysis
Description: An algorithm which can be used to determine an objective threshold for signal-noise separation in large random matrices (correlation matrices, mutual information matrices, network adjacency matrices) is provided. The package makes use of the results of Random Matrix Theory (RMT). The algorithm increments a suppositional threshold monotonically, thereby recording the eigenvalue spacing distribution of the matrix. According to RMT, that distribution undergoes a characteristic change when the threshold properly separates signal from noise. By using the algorithm, the modular structure of a matrix - or of the corresponding network - can be unraveled.
Author: Uwe Menzel
Maintainer: Uwe Menzel <uwemenzel@gmail.com>
Diff between RMThreshold versions 1.0 dated 2016-06-21 and 1.1 dated 2016-06-23
RMThreshold-1.0/RMThreshold/data |only RMThreshold-1.0/RMThreshold/man/random.matrix.Rd |only RMThreshold-1.1/RMThreshold/DESCRIPTION | 7 +-- RMThreshold-1.1/RMThreshold/MD5 | 26 ++++++------- RMThreshold-1.1/RMThreshold/inst |only RMThreshold-1.1/RMThreshold/man/add.Gaussian.noise.Rd | 2 - RMThreshold-1.1/RMThreshold/man/create.rand.mat.Rd | 1 RMThreshold-1.1/RMThreshold/man/rm.connections.Rd | 9 ++-- RMThreshold-1.1/RMThreshold/man/rm.denoise.mat.Rd | 3 + RMThreshold-1.1/RMThreshold/man/rm.discard.zeros.Rd | 3 + RMThreshold-1.1/RMThreshold/man/rm.ev.density.Rd | 3 + RMThreshold-1.1/RMThreshold/man/rm.get.threshold.Rd | 18 +++------ RMThreshold-1.1/RMThreshold/man/rm.matrix.validation.Rd | 14 +------ RMThreshold-1.1/RMThreshold/man/rm.show.plots.Rd | 3 + RMThreshold-1.1/RMThreshold/man/rm.spacing.distribution.Rd | 3 + 15 files changed, 41 insertions(+), 51 deletions(-)
Title: R Code for Mark Analysis
Description: An interface to the software package MARK that constructs input
files for MARK and extracts the output. MARK was developed by Gary White
and is freely available at (http://www.phidot.org/software/mark/downloads/)
but is not open source.
Author: Jeff Laake <jeff.laake@noaa.gov> with code contributions from Eldar
Rakhimberdiev, Ben Augustine and Daniel Turek, and example data and analysis
from Bret Collier, Jay Rotella, David Pavlacky,Andrew Paul and Luke Eberhart-
Phillips.
Maintainer: Jeff Laake <Jeff.Laake@noaa.gov>
Diff between RMark versions 2.1.14 dated 2015-12-15 and 2.2.0 dated 2016-06-23
DESCRIPTION | 16 +-- MD5 | 212 ++++++++++++++++++++-------------------- NAMESPACE | 5 NEWS | 19 +++ R/RMark-package.R | 3 R/covariate.predictions.r | 28 ++++- R/make.design.data.R | 4 R/make.mark.model.R | 7 + R/mark.wrapper.parallel.r | 31 +++-- R/predict_real.R |only man/ABeginnersGuide.Rd | 4 man/Blackduck.Rd | 8 + man/Burnham.Rd | 66 ++++++------ man/Donovan.7.Rd | 6 - man/Donovan.8.Rd | 5 man/IELogitNormalMR.Rd | 4 man/LogitNormalMR.Rd | 4 man/MS_popan.Rd | 2 man/MStruncate.Rd | 7 - man/NicholsMSOccupancy.Rd | 16 +-- man/PIMS.Rd | 4 man/PoissonMR.Rd | 2 man/Poisson_twoMR.Rd | 6 - man/RDOccupancy.Rd | 9 - man/RDSalamander.Rd | 3 man/TransitionMatrix.Rd | 4 man/Whatsnew.Rd | 12 +- man/add.design.data.Rd | 2 man/adjust.parameter.count.Rd | 2 man/adjust.value.Rd | 9 - man/brownie.Rd | 10 - man/cleanup.Rd | 2 man/coef.mark.Rd | 2 man/collect.model.names.Rd | 2 man/collect.models.Rd | 4 man/compute.design.data.Rd | 4 man/compute.link.Rd | 2 man/compute.links.from.reals.Rd | 2 man/compute.real.Rd | 4 man/convert.inp.Rd | 4 man/convert.link.to.real.Rd | 2 man/covariate.predictions.Rd | 77 +++++++------- man/crdms.Rd | 8 - man/create.mark.mcmc.Rd | 4 man/create.model.list.Rd | 12 +- man/deer.Rd | 29 ++--- man/deltamethod.special.Rd | 6 - man/deriv_inverse.link.Rd | 2 man/dipper.Rd | 8 - man/edwards.eberhardt.Rd | 4 man/example.data.Rd | 2 man/export.MARK.Rd | 12 +- man/export.chdata.Rd | 8 - man/export.model.Rd | 4 man/extract.indices.Rd | 14 +- man/extract.mark.output.Rd | 2 man/fill.covariates.Rd | 20 +-- man/find.covariates.Rd | 4 man/get.link.Rd | 2 man/get.real.Rd | 15 +- man/import.chdata.Rd | 2 man/inverse.link.Rd | 2 man/killdeer.Rd | 4 man/larksparrow.Rd | 30 ++--- man/load.model.Rd | 2 man/make.design.data.Rd | 17 ++- man/make.mark.model.Rd | 7 - man/make.time.factor.Rd | 4 man/mallard.Rd | 81 +++++++-------- man/mark.Rd | 8 - man/mark.wrapper.Rd | 2 man/mark.wrapper.parallel.Rd | 2 man/mata.wald.Rd | 50 ++++----- man/merge.mark.Rd | 4 man/merge_design.covariates.Rd | 3 man/model.average.Rd | 2 man/model.average.list.Rd | 25 ++-- man/model.average.marklist.Rd | 39 +++---- man/model.table.Rd | 4 man/mstrata.Rd | 4 man/popan.derived.Rd | 8 - man/predict_real.Rd |only man/print.mark.Rd | 2 man/print.marklist.Rd | 2 man/print.summary.mark.Rd | 2 man/process.ch.Rd | 8 - man/process.data.Rd | 4 man/read.mark.binary.Rd | 2 man/release.gof.Rd | 2 man/remove.mark.Rd | 4 man/rerun.mark.Rd | 8 - man/robust.Rd | 64 ++++++------ man/run.mark.model.Rd | 2 man/run.models.Rd | 2 man/salamander.Rd | 2 man/setup.model.Rd | 2 man/setup.parameters.Rd | 2 man/skagit.Rd | 26 ++-- man/splitCH.Rd | 8 - man/store.Rd | 2 man/strip.comments.Rd | 2 man/summary.mark.Rd | 2 man/summary_ch.Rd | 4 man/valid.parameters.Rd | 2 man/var.components.Rd | 8 - man/var.components.reml.Rd | 12 +- man/weta.Rd | 3 man/wwdo.popan.Rd | 88 ++++++++-------- 108 files changed, 724 insertions(+), 612 deletions(-)
Title: Randomization for Clinical Trials
Description: This tool enables the user to choose a randomization procedure
based on sound scientific criteria. It comprises the generation of
randomization sequences as well the assessment of randomization procedures
based on carefully selected criteria. Furthermore, randomizeR provides a
function for the comparison of randomization procedures.
Author: David Schindler [aut],
Diane Uschner [aut, cre],
Martin Manolov [ctb],
Thi Mui Pham [ctb],
Ralf-Dieter Hilgers [aut, ths],
Nicole Heussen [aut, ths]
Maintainer: Diane Uschner <duschner@ukaachen.de>
Diff between randomizeR versions 1.2.0 dated 2016-03-11 and 1.3 dated 2016-06-23
randomizeR-1.2.0/randomizeR/vignettes/randomizeRQuickReferenceGuide.pdf |only randomizeR-1.3/randomizeR/DESCRIPTION | 10 - randomizeR-1.3/randomizeR/MD5 | 66 +++++----- randomizeR-1.3/randomizeR/NAMESPACE | 3 randomizeR-1.3/randomizeR/NEWS.md | 12 + randomizeR-1.3/randomizeR/R/abcdPar.R | 4 randomizeR-1.3/randomizeR/R/abcdSeq.R | 8 - randomizeR-1.3/randomizeR/R/chronBias.R | 4 randomizeR-1.3/randomizeR/R/createParam.R | 30 +++- randomizeR-1.3/randomizeR/R/issue.R | 33 +++-- randomizeR-1.3/randomizeR/R/randPar.R | 49 ++++--- randomizeR-1.3/randomizeR/R/randomizeROverview.R | 11 - randomizeR-1.3/randomizeR/R/randomizeRPackage.R | 9 + randomizeR-1.3/randomizeR/README.md | 2 randomizeR-1.3/randomizeR/build/vignette.rds |binary randomizeR-1.3/randomizeR/inst/doc/article.R |only randomizeR-1.3/randomizeR/inst/doc/article.Rnw |only randomizeR-1.3/randomizeR/inst/doc/article.pdf |only randomizeR-1.3/randomizeR/inst/doc/comparison-example.R | 6 randomizeR-1.3/randomizeR/inst/doc/comparison-example.Rnw | 13 + randomizeR-1.3/randomizeR/inst/doc/comparison-example.pdf |binary randomizeR-1.3/randomizeR/inst/doc/randomizeR-refCard.pdf |binary randomizeR-1.3/randomizeR/man/abcdPar.Rd | 4 randomizeR-1.3/randomizeR/man/chronBias.Rd | 4 randomizeR-1.3/randomizeR/man/createParam.Rd | 4 randomizeR-1.3/randomizeR/man/generateAllSequences.Rd | 18 +- randomizeR-1.3/randomizeR/man/generateRandomSequences.Rd | 20 +-- randomizeR-1.3/randomizeR/man/getRandomizationList.Rd | 4 randomizeR-1.3/randomizeR/man/issue.Rd | 33 +++-- randomizeR-1.3/randomizeR/man/overview.Rd | 12 - randomizeR-1.3/randomizeR/man/randPar-class.Rd | 4 randomizeR-1.3/randomizeR/man/randPar.Rd | 17 +- randomizeR-1.3/randomizeR/man/randomizeR-package.Rd | 6 randomizeR-1.3/randomizeR/man/seed.Rd | 4 randomizeR-1.3/randomizeR/vignettes/article.Rnw |only randomizeR-1.3/randomizeR/vignettes/comparison-example.Rnw | 13 + randomizeR-1.3/randomizeR/vignettes/references.bib |only 37 files changed, 240 insertions(+), 163 deletions(-)
Title: HTML Exportation for R Objects
Description: Includes HTML function and methods to write in an HTML
file. Thus, making HTML reports is easy. Includes a function
that allows redirection on the fly, which appears to be very
useful for teaching purpose, as the student can keep a copy of
the produced output to keep all that he did during the course.
Package comes with a vignette describing how to write HTML
reports for statistical analysis. Finally, a driver for 'Sweave'
allows to parse HTML flat files containing R code and to
automatically write the corresponding outputs (tables and
graphs).
Author: Eric Lecoutre [aut],
Milan Bouchet-Valat [cre, ctb],
Thomas Friedrichsmeier [ctb]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between R2HTML versions 2.3.1 dated 2014-10-04 and 2.3.2 dated 2016-06-23
DESCRIPTION | 24 ++++++++++++------------ MD5 | 14 +++++++------- NAMESPACE | 8 ++++++++ NEWS | 3 +++ R/HTMLcore.R | 8 ++++---- R/HTMLlme.R | 2 +- demo/dataframe.R | 2 +- man/HTML.data.frame.Rd | 4 ++-- 8 files changed, 38 insertions(+), 27 deletions(-)
Title: The Lindley Distribution and Its Modifications
Description: Computes the probability density, the cumulative distribution, the quantile and
the hazard rate functions and generates random deviates from the discrete and continuous
Lindley distribution as well as for 19 of its modifications. It also generates censored
random deviates from any probability distribution available in R.
Author: Josmar Mazucheli, Larissa B. Fernandes and Ricardo P. de Oliveira
Maintainer: Josmar Mazucheli <jmazucheli@gmail.com>
Diff between LindleyR versions 1.0.0 dated 2016-05-22 and 1.1.0 dated 2016-06-23
LindleyR-1.0.0/LindleyR/NEWS |only LindleyR-1.1.0/LindleyR/DESCRIPTION | 23 +- LindleyR-1.1.0/LindleyR/MD5 | 91 ++++++---- LindleyR-1.1.0/LindleyR/NAMESPACE | 29 ++- LindleyR-1.1.0/LindleyR/NEWS.md |only LindleyR-1.1.0/LindleyR/R/DLindley.R |only LindleyR-1.1.0/LindleyR/R/DPLindley.R |only LindleyR-1.1.0/LindleyR/R/DWLindley.R |only LindleyR-1.1.0/LindleyR/R/EXPLindley.R | 53 +++--- LindleyR-1.1.0/LindleyR/R/EXPPLindley.R | 72 ++++---- LindleyR-1.1.0/LindleyR/R/EXTILindley.R | 202 ++++++++++++++---------- LindleyR-1.1.0/LindleyR/R/EXTLindley.R | 104 ++++++------ LindleyR-1.1.0/LindleyR/R/EXTPLindley.R | 42 ++-- LindleyR-1.1.0/LindleyR/R/GAMLindley.R |only LindleyR-1.1.0/LindleyR/R/GENILindley.R | 90 +++++----- LindleyR-1.1.0/LindleyR/R/GENLindley.R | 49 ++--- LindleyR-1.1.0/LindleyR/R/ILindley.R | 82 ++++----- LindleyR-1.1.0/LindleyR/R/Lindley.R | 64 +++---- LindleyR-1.1.0/LindleyR/R/LindleyE.R |only LindleyR-1.1.0/LindleyR/R/MOLindley.R | 53 +++--- LindleyR-1.1.0/LindleyR/R/NWLindley.R | 35 +--- LindleyR-1.1.0/LindleyR/R/PLindley.R | 67 +++---- LindleyR-1.1.0/LindleyR/R/QLindley.R | 62 +++---- LindleyR-1.1.0/LindleyR/R/Slindley.R | 70 ++++---- LindleyR-1.1.0/LindleyR/R/TLindley.R | 24 +- LindleyR-1.1.0/LindleyR/R/WLindley.R | 92 ++++------ LindleyR-1.1.0/LindleyR/R/randcensor.R | 2 LindleyR-1.1.0/LindleyR/data |only LindleyR-1.1.0/LindleyR/man/DLindley.Rd |only LindleyR-1.1.0/LindleyR/man/DPLindley.Rd |only LindleyR-1.1.0/LindleyR/man/DWLindley.Rd |only LindleyR-1.1.0/LindleyR/man/EXPLindley.Rd | 23 +- LindleyR-1.1.0/LindleyR/man/EXPPLindley.Rd | 39 ++-- LindleyR-1.1.0/LindleyR/man/EXTILindley.Rd | 44 ++--- LindleyR-1.1.0/LindleyR/man/EXTLindley.Rd | 40 ++-- LindleyR-1.1.0/LindleyR/man/EXTPLindley.Rd | 14 - LindleyR-1.1.0/LindleyR/man/GAMLindley.Rd |only LindleyR-1.1.0/LindleyR/man/GENILindley.Rd | 35 ++-- LindleyR-1.1.0/LindleyR/man/GENLindley.Rd | 18 +- LindleyR-1.1.0/LindleyR/man/ILindley.Rd | 27 +-- LindleyR-1.1.0/LindleyR/man/Lindley.Rd | 23 +- LindleyR-1.1.0/LindleyR/man/LindleyE.Rd |only LindleyR-1.1.0/LindleyR/man/LindleyR-package.Rd | 51 +++--- LindleyR-1.1.0/LindleyR/man/MOLindley.Rd | 26 +-- LindleyR-1.1.0/LindleyR/man/NWLindley.Rd | 10 - LindleyR-1.1.0/LindleyR/man/PLindley.Rd | 24 +- LindleyR-1.1.0/LindleyR/man/QLindley.Rd | 15 - LindleyR-1.1.0/LindleyR/man/SLindley.Rd | 25 +- LindleyR-1.1.0/LindleyR/man/TLindley.Rd | 8 LindleyR-1.1.0/LindleyR/man/WLindley.Rd | 30 ++- LindleyR-1.1.0/LindleyR/man/randcensor.Rd | 2 51 files changed, 930 insertions(+), 830 deletions(-)
Title: Tools for the Analysis of Ecosystem Metabolism
Description: A collection of tools for the calculation of freewater metabolism.
Author: Luke Winslow, Jake Zwart, Ryan Batt, Jessica Corman, Hilary Dugan, Paul
Hanson, Aline Jaimes, Jordan Read, Richard Woolway
Maintainer: Luke Winslow <lawinslow@gmail.com>
Diff between LakeMetabolizer versions 1.4.1 dated 2016-01-22 and 1.5.0 dated 2016-06-23
DESCRIPTION | 6 +++--- MD5 | 6 ++++-- NEWS.md |only R/metab.bookkeep.R | 2 +- inst/CITATION |only 5 files changed, 8 insertions(+), 6 deletions(-)
More information about LakeMetabolizer at CRAN
Permanent link
Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to the Windows,
OS X, and X11 clipboards.
Author: Matthew Lincoln [aut, cre],
Louis Maddox [ctb],
Steve Simpson [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Diff between clipr versions 0.2.0 dated 2015-10-06 and 0.2.1 dated 2016-06-23
DESCRIPTION | 20 +++++++++++++------- MD5 | 24 +++++++++++++----------- NAMESPACE | 3 ++- NEWS.md | 13 ++++++++++++- R/clipboard.R | 27 ++++++++++++++++----------- R/flat_str.R | 12 ++++++++++-- R/linux_clipboard.R | 25 ++++++++++++++----------- R/read_clip_tbl.R |only README.md | 18 ++++++++++++++++++ man/clear_clip.Rd | 2 +- man/read_clip.Rd | 7 +++---- man/read_clip_tbl.Rd |only man/write_clip.Rd | 12 +++++++++--- tests/testthat/test_render.R | 34 ++++++++++++++++++++++------------ 14 files changed, 133 insertions(+), 64 deletions(-)
Title: Meta-Analysis for Diagnostic Test Studies
Description: Bayesian inference analysis for bivariate meta-analysis of diagnostic test studies using integrated nested Laplace approximation with INLA. A purpose built graphic user interface is available. The installation of R package INLA is compulsory for successful usage. The INLA package can be obtained from <http://www.r-inla.org>. We recommend the testing version, which can be downloaded by running: install.packages("INLA", repos="http://www.math.ntnu.no/inla/R/testing").
Author: Jingyi Guo <jingyi.guo@math.ntnu.no> and Andrea Riebler <andrea.riebler@math.ntnu.no>
Maintainer: Jingyi Guo <jingyi.guo@math.ntnu.no>
Diff between meta4diag versions 1.0.20 dated 2015-08-25 and 2.0.2 dated 2016-06-23
DESCRIPTION | 14 MD5 | 106 NAMESPACE | 6 R/SROC.R | 32 R/crosshair.R | 2 R/forest.R | 242 +- R/forest.grid.R | 24 R/makeData.R | 369 +-- R/makeObject.R | 61 R/makePriors.R | 8 R/meta4diag.R | 134 - R/meta4diagGUI.R | 6254 ++++++++++++++++++++++++++-------------------------- R/plot.R | 54 R/runModel.R | 17 R/uuu.R | 120 R/zzz.R | 3752 +++++++++++++++---------------- data/Catheter.rda |binary data/Scheidler.rda |binary data/Telomerase.rda |binary data/table_cor.rda |binary data/table_var.rda |binary inst/meta4diagGUI |only man/SROC.Rd | 23 man/crosshair.Rd | 2 man/fitted.Rd | 2 man/forest.Rd | 10 man/makeData.Rd | 2 man/makeObject.Rd | 2 man/makePriors.Rd | 2 man/meta4diag.Rd | 2 man/plot.Rd | 2 man/print.Rd | 2 man/runModel.Rd | 2 man/summary.Rd | 2 34 files changed, 5736 insertions(+), 5512 deletions(-)
Title: Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
Description: Perform factorial analysis with a menu and draw graphs interactively thanks to 'FactoMineR' and a Shiny application.
Author: Pauline Vaissie, Astrid Monge, Francois Husson
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between Factoshiny versions 1.0.3 dated 2016-06-03 and 1.0.4 dated 2016-06-23
DESCRIPTION | 8 - MD5 | 30 +++--- build |only inst/FactoCAapp2/global.R | 31 +++--- inst/FactoCAapp2/server.R | 150 +++++++++++++++++-------------- inst/FactoFAMDapp2/server.R | 156 +++++++++++++++++---------------- inst/FactoHCPCappdf2/server.R | 15 +-- inst/FactoMCAapp2/global.R | 4 inst/FactoMCAapp2/server.R | 121 ++++++++++++++----------- inst/FactoMCAapp2/ui.R | 8 - inst/FactoPCAapp2/server.R | 97 +++++++++++--------- inst/doc |only inst/po/fr/LC_MESSAGES/R-Factoshiny.mo |binary po/R-Factoshiny.mo |binary po/R-Factoshiny.po | 64 +++++++++++++ vignettes |only 16 files changed, 400 insertions(+), 284 deletions(-)
Title: Optimal Designs for Copula Models
Description: A direct approach to optimal designs for copula models based on
the Fisher information. Provides flexible functions for building joint PDFs,
evaluating the Fisher information and finding optimal designs. It includes an
extensible solution to summation and integration called 'nint', functions for
transforming, plotting and comparing designs, as well as a set of tools for
common low-level tasks.
Author: Andreas Rappold [aut, cre]
Maintainer: Andreas Rappold <arappold@gmx.at>
Diff between docopulae versions 0.3.2 dated 2015-10-14 and 0.3.3 dated 2016-06-23
docopulae-0.3.2/docopulae/man/FedorovWynn.Rd |only docopulae-0.3.2/docopulae/man/expr2f.Rd |only docopulae-0.3.2/docopulae/tests/testthat/Rplots.pdf |only docopulae-0.3.3/docopulae/DESCRIPTION | 25 docopulae-0.3.3/docopulae/MD5 | 99 - docopulae-0.3.3/docopulae/NAMESPACE | 7 docopulae-0.3.3/docopulae/R/base.R | 184 +- docopulae-0.3.3/docopulae/R/docopulae.R | 9 docopulae-0.3.3/docopulae/R/examples/buildf.R | 108 - docopulae-0.3.3/docopulae/R/examples/main.R | 126 - docopulae-0.3.3/docopulae/R/examples/nint_integrate.R | 5 docopulae-0.3.3/docopulae/R/examples/nint_integrateNCube.R | 5 docopulae-0.3.3/docopulae/R/examples/nint_integrateNFunc.R | 5 docopulae-0.3.3/docopulae/R/examples/nint_tanTransform.R |only docopulae-0.3.3/docopulae/R/examples/nint_transform.R | 141 + docopulae-0.3.3/docopulae/R/examples/rowmatch.R | 8 docopulae-0.3.3/docopulae/R/main.R | 731 +++++----- docopulae-0.3.3/docopulae/R/nint.R | 512 +++++-- docopulae-0.3.3/docopulae/man/Defficiency.Rd | 35 docopulae-0.3.3/docopulae/man/DerivLogf.Rd | 38 docopulae-0.3.3/docopulae/man/Dsensitivity.Rd | 33 docopulae-0.3.3/docopulae/man/Wynn.Rd |only docopulae-0.3.3/docopulae/man/buildf.Rd | 135 + docopulae-0.3.3/docopulae/man/design.Rd | 5 docopulae-0.3.3/docopulae/man/docopulae.Rd | 13 docopulae-0.3.3/docopulae/man/fisherI.Rd | 9 docopulae-0.3.3/docopulae/man/getM.Rd | 9 docopulae-0.3.3/docopulae/man/integrateA.Rd | 6 docopulae-0.3.3/docopulae/man/nint_ERROR.Rd | 2 docopulae-0.3.3/docopulae/man/nint_TYPE.Rd | 2 docopulae-0.3.3/docopulae/man/nint_expandSpace.Rd | 6 docopulae-0.3.3/docopulae/man/nint_funcDim.Rd | 4 docopulae-0.3.3/docopulae/man/nint_gridDim.Rd | 2 docopulae-0.3.3/docopulae/man/nint_integrate.Rd | 11 docopulae-0.3.3/docopulae/man/nint_integrateNCube.Rd | 11 docopulae-0.3.3/docopulae/man/nint_integrateNFunc.Rd | 7 docopulae-0.3.3/docopulae/man/nint_intvDim.Rd | 8 docopulae-0.3.3/docopulae/man/nint_scatDim.Rd | 2 docopulae-0.3.3/docopulae/man/nint_space.Rd | 2 docopulae-0.3.3/docopulae/man/nint_tanTransform.Rd |only docopulae-0.3.3/docopulae/man/nint_transform.Rd | 182 +- docopulae-0.3.3/docopulae/man/nint_validateSpace.Rd | 6 docopulae-0.3.3/docopulae/man/numDerivLogf.Rd | 18 docopulae-0.3.3/docopulae/man/param.Rd | 128 - docopulae-0.3.3/docopulae/man/plot.desigh.Rd | 9 docopulae-0.3.3/docopulae/man/print.nint_space.Rd | 4 docopulae-0.3.3/docopulae/man/reduce.Rd | 7 docopulae-0.3.3/docopulae/man/rowmatch.Rd | 16 docopulae-0.3.3/docopulae/man/roworder.Rd | 2 docopulae-0.3.3/docopulae/man/seq1.Rd | 8 docopulae-0.3.3/docopulae/man/update.param.Rd | 7 docopulae-0.3.3/docopulae/src |only docopulae-0.3.3/docopulae/tests/testthat/test_base.R | 293 +++- docopulae-0.3.3/docopulae/tests/testthat/test_main.R |only docopulae-0.3.3/docopulae/tests/testthat/test_nint_transform.R |only 55 files changed, 1912 insertions(+), 1073 deletions(-)
Title: Utilities for the Simulation and Analysis of Random Fields
Description: Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
Author: Martin Schlather [aut, cre], Reinhard Furrer [ctb], Martin Kroll [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFieldsUtils versions 0.1.0 dated 2016-04-23 and 0.2.1 dated 2016-06-23
RandomFieldsUtils-0.1.0/RandomFieldsUtils/inst/include/Matrix_mult.h |only RandomFieldsUtils-0.1.0/RandomFieldsUtils/inst/include/utils.h |only RandomFieldsUtils-0.1.0/RandomFieldsUtils/src/Matrix_mult.h |only RandomFieldsUtils-0.1.0/RandomFieldsUtils/src/RFutils.cc |only RandomFieldsUtils-0.1.0/RandomFieldsUtils/src/matrix_mult.cc |only RandomFieldsUtils-0.1.0/RandomFieldsUtils/src/utils.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/DESCRIPTION | 6 RandomFieldsUtils-0.2.1/RandomFieldsUtils/MD5 | 61 RandomFieldsUtils-0.2.1/RandomFieldsUtils/NAMESPACE | 14 RandomFieldsUtils-0.2.1/RandomFieldsUtils/R/RFutils.R | 54 RandomFieldsUtils-0.2.1/RandomFieldsUtils/R/getNset.R |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/R/zzz.R |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/configure.ac | 2 RandomFieldsUtils-0.2.1/RandomFieldsUtils/inst/include/Basic_utils.h | 61 RandomFieldsUtils-0.2.1/RandomFieldsUtils/inst/include/Error_utils.h | 2 RandomFieldsUtils-0.2.1/RandomFieldsUtils/inst/include/General_utils.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/inst/include/Options_utils.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/inst/include/Solve.h | 83 RandomFieldsUtils-0.2.1/RandomFieldsUtils/inst/include/kleinkram.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/inst/include/own.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/man/RFoptions.Rd |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/man/Struve.Rd | 1 RandomFieldsUtils-0.2.1/RandomFieldsUtils/man/cholPosDef.Rd |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/man/solvePosDef.Rd | 8 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/Basic_utils.h | 59 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/Error_utils.h | 2 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/General_utils.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/Makevars.in | 2 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/Makevars.win | 7 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/Options_utils.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/RFoptions.cc |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/R_init.cc | 71 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/R_init.h | 28 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/RandomFieldsUtils.h | 15 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/Solve.h | 83 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/cholmodified.f | 4 RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/kleinkram.cc |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/kleinkram.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/options.cc |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/own.h |only RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/solve.cc | 1217 ++++++---- RandomFieldsUtils-0.2.1/RandomFieldsUtils/src/sqrt.cc | 461 --- 42 files changed, 1228 insertions(+), 1013 deletions(-)
More information about RandomFieldsUtils at CRAN
Permanent link
Title: Simulation and Analysis of Random Fields
Description: Methods for the inference on and the simulation of Gaussian fields are provided, as well as methods for the simulation of extreme value random fields.
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Olga Moreva [aut], Christoph Berreth [ctr], Peter Menck [ctr], Sebastian Gross [ctr], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFields versions 3.1.12 dated 2016-04-25 and 3.1.16 dated 2016-06-23
RandomFields-3.1.12/RandomFields/src/matrix_mult.cc |only RandomFields-3.1.16/RandomFields/DESCRIPTION | 8 RandomFields-3.1.16/RandomFields/MD5 | 115 +- RandomFields-3.1.16/RandomFields/NAMESPACE | 12 RandomFields-3.1.16/RandomFields/R/Crossvalidation.R | 3 RandomFields-3.1.16/RandomFields/R/D.H.R | 4 RandomFields-3.1.16/RandomFields/R/Likelihoodratio.R | 8 RandomFields-3.1.16/RandomFields/R/Methods-aux.R | 2 RandomFields-3.1.16/RandomFields/R/RFempvario.R | 4 RandomFields-3.1.16/RandomFields/R/RMmodels-Methods-plots.R | 6 RandomFields-3.1.16/RandomFields/R/auxiliary.R | 2 RandomFields-3.1.16/RandomFields/R/bigdata.R | 2 RandomFields-3.1.16/RandomFields/R/convert.R | 8 RandomFields-3.1.16/RandomFields/R/fitgauss.R | 3 RandomFields-3.1.16/RandomFields/R/getNset.R | 89 - RandomFields-3.1.16/RandomFields/R/internal_use.R | 53 - RandomFields-3.1.16/RandomFields/R/kriging.R | 2 RandomFields-3.1.16/RandomFields/R/obsolete.R | 6 RandomFields-3.1.16/RandomFields/R/rf.R | 16 RandomFields-3.1.16/RandomFields/R/zzz.R | 26 RandomFields-3.1.16/RandomFields/configure.ac | 7 RandomFields-3.1.16/RandomFields/man/RFfractaldim.Rd | 2 RandomFields-3.1.16/RandomFields/man/RFhurst.Rd | 2 RandomFields-3.1.16/RandomFields/man/RFoptions.Rd | 37 RandomFields-3.1.16/RandomFields/man/RFoptionsAdvanced.Rd | 2 RandomFields-3.1.16/RandomFields/man/RFpointsDataFrame-class.Rd | 2 RandomFields-3.1.16/RandomFields/man/RFratiotest.Rd | 2 RandomFields-3.1.16/RandomFields/man/RFspatialGridDataFrame-class.Rd | 2 RandomFields-3.1.16/RandomFields/man/RFspatialPointsDataFrame-class.Rd | 2 RandomFields-3.1.16/RandomFields/man/RMmodelsMultivariate.Rd | 3 RandomFields-3.1.16/RandomFields/man/RPcirculant.Rd | 1 RandomFields-3.1.16/RandomFields/man/internal.Rd | 6 RandomFields-3.1.16/RandomFields/man/obsolete.Rd | 4 RandomFields-3.1.16/RandomFields/src/InternalCov.cc | 4 RandomFields-3.1.16/RandomFields/src/KeyInfo.cc | 269 ----- RandomFields-3.1.16/RandomFields/src/MLE.cc | 16 RandomFields-3.1.16/RandomFields/src/Makevars.in | 2 RandomFields-3.1.16/RandomFields/src/Makevars.win | 7 RandomFields-3.1.16/RandomFields/src/Primitive.cc | 2 RandomFields-3.1.16/RandomFields/src/RF.h | 40 RandomFields-3.1.16/RandomFields/src/RandomFields.h | 7 RandomFields-3.1.16/RandomFields/src/Userinterfaces.h | 45 RandomFields-3.1.16/RandomFields/src/auxiliary.cc | 393 ------- RandomFields-3.1.16/RandomFields/src/auxiliary.h | 33 RandomFields-3.1.16/RandomFields/src/basic.h | 31 RandomFields-3.1.16/RandomFields/src/circulant.cc | 3 RandomFields-3.1.16/RandomFields/src/direct.cc | 17 RandomFields-3.1.16/RandomFields/src/gauss.cc | 8 RandomFields-3.1.16/RandomFields/src/gausslikeli.cc | 23 RandomFields-3.1.16/RandomFields/src/getNset.cc | 20 RandomFields-3.1.16/RandomFields/src/initNerror.cc | 12 RandomFields-3.1.16/RandomFields/src/kleinkram.cc |only RandomFields-3.1.16/RandomFields/src/kleinkram.h |only RandomFields-3.1.16/RandomFields/src/nugget.cc | 4 RandomFields-3.1.16/RandomFields/src/plusmalS.cc | 27 RandomFields-3.1.16/RandomFields/src/rf_interfaces.cc | 15 RandomFields-3.1.16/RandomFields/src/userinterfaces.cc | 526 ++-------- RandomFields-3.1.16/RandomFields/src/variogramAndCo.cc | 3 RandomFields-3.1.16/RandomFields/src/xport.cc | 24 RandomFields-3.1.16/RandomFields/src/xport.h | 28 60 files changed, 505 insertions(+), 1495 deletions(-)
Title: Toolset for Corpus Analysis
Description: Tools for corpus analysis using the CWB as an efficient backend.
The package offers basic functionality to flexibly create subcorpora and to
carry out and basic statistical operations. Beyond that, it is intended to
serve as an interface to packages implementing advanced statistical
procedures.
Author: Andreas Blaette
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between polmineR versions 0.6.0 dated 2016-06-22 and 0.6.1 dated 2016-06-23
polmineR-0.6.0/polmineR/configure |only polmineR-0.6.1/polmineR/DESCRIPTION | 6 ++--- polmineR-0.6.1/polmineR/MD5 | 7 ++---- polmineR-0.6.1/polmineR/NEWS | 27 ++++++-------------------- polmineR-0.6.1/polmineR/inst/doc/vignette.pdf |binary 5 files changed, 13 insertions(+), 27 deletions(-)
Title: Ribosome Profiling Data Analysis
Description: Included here are babel routines for identifying unusual ribosome protected fragment counts given mRNA counts.
Author: Adam B. Olshen, Richard A. Olshen, Barry S. Taylor
Maintainer: Adam B. Olshen <adam.olshen@ucsf.edu>
Diff between babel versions 0.2-6 dated 2014-06-13 and 0.3-0 dated 2016-06-23
DESCRIPTION | 10 ++--- MD5 | 17 ++++---- NAMESPACE | 2 + NEWS | 17 +++++--- R/babel.R | 104 +++++++++++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/babel.R | 2 - inst/doc/babel.pdf |binary man/babel.Rd | 3 + tests |only 10 files changed, 91 insertions(+), 64 deletions(-)