Fri, 24 Jun 2016

Package validate updated to version 0.1.5 with previous version 0.1.4 dated 2016-04-15

Title: Data Validation Infrastructure
Description: Declare data validation rules and data quality indicators; confront data with them and analyze or visualize the results. The package supports rules that are per-field, in-record, cross-record or cross-dataset. Rules can be automatically analyzed for rule type and connectivity.
Author: Mark van der Loo [cre, aut], Edwin de Jonge [aut], Paul Hsieh [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>

Diff between validate versions 0.1.4 dated 2016-04-15 and 0.1.5 dated 2016-06-24

 DESCRIPTION                        |    8 +--
 MD5                                |   34 +++++++--------
 NEWS                               |    5 ++
 R/compare.R                        |   20 +++++----
 R/confrontation.R                  |   25 ++++++-----
 R/functions.R                      |    8 +++
 R/retailers.R                      |    5 +-
 R/yaml.R                           |    2 
 inst/doc/intro.html                |   71 +++++++++++++++++---------------
 inst/doc/rule-files.Rmd            |   27 +++++++++++-
 inst/doc/rule-files.html           |   81 ++++++++++++++++++++++---------------
 man/compare.Rd                     |    4 -
 man/confront.Rd                    |    4 +
 man/retailers.Rd                   |    5 +-
 tests/testthat/testConfrontation.R |    4 +
 tests/testthat/testParse.R         |    2 
 tests/testthat/testUtils.R         |    4 -
 vignettes/rule-files.Rmd           |   27 +++++++++++-
 18 files changed, 222 insertions(+), 114 deletions(-)

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Package UpSetR updated to version 1.2.2 with previous version 1.2.1 dated 2016-06-01

Title: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks.
Author: Jake Conway [cre], Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway@student.uml.edu>

Diff between UpSetR versions 1.2.1 dated 2016-06-01 and 1.2.2 dated 2016-06-24

 DESCRIPTION  |    9 +++++----
 MD5          |   14 +++++++-------
 NAMESPACE    |    1 +
 NEWS         |    6 ++++++
 R/MainBar.R  |   12 ++++++++----
 R/SizeBar.R  |   33 ++++++++++++++++++++++++++++++---
 R/upset.R    |   12 ++++++++----
 man/upset.Rd |    7 ++++++-
 8 files changed, 71 insertions(+), 23 deletions(-)

More information about UpSetR at CRAN
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Package TraMineR updated to version 1.8-12 with previous version 1.8-11.1 dated 2016-01-29

Title: Trajectory Miner: a Toolbox for Exploring and Rendering Sequences
Description: Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph], Matthias Studer [aut, cph], Nicolas Muller [aut], Reto Buergin [aut], Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>

Diff between TraMineR versions 1.8-11.1 dated 2016-01-29 and 1.8-12 dated 2016-06-24

 DESCRIPTION                          |   10 ++--
 MD5                                  |   82 ++++++++++++++++++++++++++---------
 NEWS                                 |   27 +++++++++++
 R/BIOSPELL_to_STS.R                  |   54 ++++++++++++-----------
 R/dissmfac.R                         |    3 -
 R/plot.stslist.R                     |    5 +-
 R/seqST.R                            |   30 ++++++++++--
 R/seqdef.R                           |   52 +++++++++++-----------
 R/seqtab.R                           |   36 ++++++++-------
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 24 files changed, 246 insertions(+), 118 deletions(-)

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Package Thermimage updated to version 2.1.1 with previous version 2.1 dated 2016-05-18

Title: Thermal Image Analysis
Description: A collection of functions and routines for inputting thermal image video files, plotting and converting binary raw data into estimates of temperature. First published 2015-03-26. Written primarily for research purposes in biological applications of thermal images. v1 included the base calculations for converting thermal image binary values to temperatures. v2 included additional equations for providing heat transfer calculations.
Author: Glenn J. Tattersall
Maintainer: Glenn J. Tattersall <gtatters@brocku.ca>

Diff between Thermimage versions 2.1 dated 2016-05-18 and 2.1.1 dated 2016-06-24

 DESCRIPTION            |   12 +++++++-----
 MD5                    |   28 +++++++++++++++++-----------
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 man/palette.choose.Rd  |    5 +----
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 man/raw2temp.Rd        |    6 +-----
 man/slopeEveryN.Rd     |    4 ----
 man/slopebypoint.Rd    |    5 -----
 man/temp2raw.Rd        |    4 ----
 18 files changed, 45 insertions(+), 49 deletions(-)

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Package sparsediscrim updated to version 0.2.3 with previous version 0.2 dated 2014-03-31

Title: Sparse and Regularized Discriminant Analysis
Description: A collection of sparse and regularized discriminant analysis methods intended for small-sample, high-dimensional data sets. The package features the High-Dimensional Regularized Discriminant Analysis classifier.
Author: John A. Ramey <johnramey@gmail.com>
Maintainer: John A. Ramey <johnramey@gmail.com>

Diff between sparsediscrim versions 0.2 dated 2014-03-31 and 0.2.3 dated 2016-06-24

 sparsediscrim-0.2.3/sparsediscrim/DESCRIPTION                      |   13 
 sparsediscrim-0.2.3/sparsediscrim/LICENSE                          |    2 
 sparsediscrim-0.2.3/sparsediscrim/MD5                              |  172 +++----
 sparsediscrim-0.2.3/sparsediscrim/NAMESPACE                        |   26 +
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 sparsediscrim-0.2.3/sparsediscrim/R/data-block-autocorrelation.r   |   44 +
 sparsediscrim-0.2.3/sparsediscrim/R/dlda.r                         |   68 +-
 sparsediscrim-0.2.3/sparsediscrim/R/dqda.r                         |   68 +-
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 sparsediscrim-0.2.3/sparsediscrim/R/hdrda.r                        |  242 ++++++----
 sparsediscrim-0.2.3/sparsediscrim/R/helper-cov.r                   |    4 
 sparsediscrim-0.2.3/sparsediscrim/R/helper-intercept.r             |    1 
 sparsediscrim-0.2.3/sparsediscrim/R/helper.r                       |   64 ++
 sparsediscrim-0.2.3/sparsediscrim/R/lda-pseudo.r                   |   75 +--
 sparsediscrim-0.2.3/sparsediscrim/R/lda-schafer.r                  |   79 +--
 sparsediscrim-0.2.3/sparsediscrim/R/lda-thomaz.r                   |   74 +--
 sparsediscrim-0.2.3/sparsediscrim/R/mdeb.r                         |   71 +-
 sparsediscrim-0.2.3/sparsediscrim/R/mdmeb.r                        |   74 +--
 sparsediscrim-0.2.3/sparsediscrim/R/mdmp.r                         |   74 +--
 sparsediscrim-0.2.3/sparsediscrim/R/sdlda.r                        |   79 +--
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 sparsediscrim-0.2.3/sparsediscrim/R/stein-shrinkage.r              |   90 +--
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 sparsediscrim-0.2.3/sparsediscrim/man/center_data.Rd               |   17 
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 sparsediscrim-0.2.3/sparsediscrim/man/cov_block_autocorrelation.Rd |   40 -
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 sparsediscrim-0.2.3/sparsediscrim/man/h.Rd                         |   23 
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 sparsediscrim-0.2.3/sparsediscrim/man/lda_pseudo.Rd                |  131 ++---
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 sparsediscrim-0.2.3/sparsediscrim/man/regdiscrim_estimates.Rd      |   84 +--
 sparsediscrim-0.2.3/sparsediscrim/man/risk_stein.Rd                |   45 -
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 sparsediscrim-0.2.3/sparsediscrim/man/smdlda.Rd                    |  156 ++----
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 84 files changed, 2230 insertions(+), 2327 deletions(-)

More information about sparsediscrim at CRAN
Permanent link

Package SpaDES updated to version 1.2.0 with previous version 1.1.4 dated 2016-04-20

Title: Develop and Run Spatially Explicit Discrete Event Simulation Models
Description: Easily implement a variety of simulation models, with a focus on spatially explicit agent based models. These include raster-based, event-based, and agent-based models. The core simulation components are built upon a discrete event simulation framework that facilitates modularity, and easily enables the user to include additional functionality by running user-built simulation modules. Included are numerous tools to visualize raster and other maps. The suggested package `fastshp` can be installed with `install.packages("fastshp", repos="http://rforge.net", type="source")`.
Author: Alex M Chubaty [aut, cre], Eliot J B McIntire [aut], Yong Luo [ctb], Steve Cumming [ctb], Her Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alexander.chubaty@canada.ca>

Diff between SpaDES versions 1.1.4 dated 2016-04-20 and 1.2.0 dated 2016-06-24

 DESCRIPTION                                                      |   24 
 MD5                                                              |  468 
 NAMESPACE                                                        |  989 -
 NEWS                                                             |  483 
 R/SELES.R                                                        |  555 
 R/agent.R                                                        |  176 
 R/check.R                                                        |  546 
 R/checkpoint.R                                                   |  676 -
 R/copy.R                                                         |   78 
 R/environment.R                                                  |  408 
 R/experiment.R                                                   | 1321 +-
 R/helpers.R                                                      |  259 
 R/initialize.R                                                   |  719 -
 R/load.R                                                         |  610 -
 R/mapReduce.R                                                    |  164 
 R/mergeRaster.R                                                  |only
 R/misc-methods.R                                                 | 1452 +-
 R/module-dependencies-class.R                                    |  450 
 R/module-dependencies-methods.R                                  |  536 
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 R/module-template.R                                              | 1564 +-
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 R/moduleMetadata.R                                               |  152 
 R/movement.R                                                     |  252 
 R/neighbourhood.R                                                | 1547 +-
 R/numerical-comparisons.R                                        |   72 
 R/plotting-classes.R                                             |  580 -
 R/plotting-colours.R                                             | 1144 +
 R/plotting-diagrams.R                                            |  612 -
 R/plotting-helpers.R                                             | 1516 +-
 R/plotting-other.R                                               |  768 -
 R/plotting.R                                                     | 3980 +++---
 R/priority.R                                                     |   86 
 R/probability.R                                                  |   94 
 R/progress.R                                                     |  234 
 R/save.R                                                         |  296 
 R/shine.R                                                        |  694 -
 R/simList-accessors.R                                            | 5777 +++++-----
 R/simList-class.R                                                |  512 
 R/simulation.R                                                   | 2000 +--
 R/spades-classes.R                                               |   72 
 R/spades-package.R                                               |  843 -
 R/splitRaster.R                                                  |  281 
 R/spread-process.R                                               | 2021 ++-
 R/times.R                                                        |  907 -
 R/zzz.R                                                          |   30 
 README.md                                                        |  149 
 build/vignette.rds                                               |binary
 demo/00Index                                                     |    4 
 demo/spades-simulation.R                                         |  102 
 inst/doc/i-introduction.R                                        |   78 
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 inst/examples                                                    |only
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 man/Plot.Rd                                                      |  621 -
 man/SELESagentLocation.Rd                                        |   58 
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 man/addDepends.Rd                                                |   58 
 man/adj.Rd                                                       |  198 
 man/append_attr.Rd                                               |   78 
 man/arrangeViewports.Rd                                          |   48 
 man/arrangement-class.Rd                                         |  144 
 man/assignSpaDES.Rd                                              |   66 
 man/cache.Rd                                                     |  103 
 man/changeObjEnv.Rd                                              |  124 
 man/checkModule.Rd                                               |   58 
 man/checkObject.Rd                                               |  112 
 man/checkParams.Rd                                               |   72 
 man/checkPath.Rd                                                 |   76 
 man/checkpoint.Rd                                                |  102 
 man/checksums.Rd                                                 |   92 
 man/cir.Rd                                                       |  248 
 man/classFilter.Rd                                               |  202 
 man/clearPlot.Rd                                                 |   80 
 man/clearStubArtifacts.Rd                                        |   58 
 man/copy.Rd                                                      |   58 
 man/crw.Rd                                                       |  154 
 man/defineModule.Rd                                              |  114 
 man/defineParameter.Rd                                           |  108 
 man/depsEdgeList.Rd                                              |   72 
 man/depsGraph.Rd                                                 |   68 
 man/depsLoadOrder.Rd                                             |   68 
 man/depsPruneEdges.Rd                                            |   54 
 man/dev.Rd                                                       |   63 
 man/digest.Rd                                                    |   54 
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 man/distances.Rd                                                 |only
 man/divergentColors.Rd                                           |   98 
 man/doEvent.Rd                                                   |   86 
 man/downloadData.Rd                                              |   70 
 man/downloadModule.Rd                                            |  128 
 man/dwrpnorm2.Rd                                                 |   88 
 man/emptyEventList.Rd                                            |  120 
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 man/fileExt.Rd                                                   |   42 
 man/fileName.Rd                                                  |   42 
 man/fileTable.Rd                                                 |   74 
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 man/ganttStatus.Rd                                               |   58 
 man/gaussmap.Rd                                                  |   98 
 man/getColors.Rd                                                 |   68 
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 man/getSpaDES.Rd                                                 |   48 
 man/grid-functions.Rd                                            |   46 
 man/heading.Rd                                                   |  128 
 man/identifyGrobToPlot.Rd                                        |   78 
 man/inRange.Rd                                                   |   60 
 man/initialize-method.Rd                                         |   34 
 man/initiateAgents.Rd                                            |  161 
 man/inputObjects.Rd                                              |   62 
 man/layerNames.Rd                                                |   90 
 man/loadFiles.Rd                                                 |  176 
 man/loadPackages.Rd                                              |  102 
 man/ls-method.Rd                                                 |   58 
 man/ls_str-method.Rd                                             |   58 
 man/makeColorMatrix.Rd                                           |  110 
 man/makeDigestible.Rd                                            |   88 
 man/makeLayout.Rd                                                |   66 
 man/makeLines.Rd                                                 |  115 
 man/makeList.Rd                                                  |   54 
 man/makeSpadesPlot.Rd                                            |   88 
 man/makeViewports.Rd                                             |   56 
 man/maxTimeunit.Rd                                               |   52 
 man/mergeRaster.Rd                                               |only
 man/minTimeunit.Rd                                               |   54 
 man/moduleCoverage.Rd                                            |  128 
 man/moduleDeps-class.Rd                                          |  146 
 man/moduleDiagram.Rd                                             |   80 
 man/moduleMetadata.Rd                                            |   82 
 man/newModule.Rd                                                 |  232 
 man/newPlot.Rd                                                   |   58 
 man/newProgressBar.Rd                                            |   50 
 man/nlayers.Rd                                                   |   77 
 man/normPath.Rd                                                  |   68 
 man/objectDiagram.Rd                                             |   68 
 man/objectNames.Rd                                               |   64 
 man/openModules.Rd                                               |  106 
 man/packages.Rd                                                  |   50 
 man/paddedFloatToChar.Rd                                         |   72 
 man/parseArgs.Rd                                                 |   58 
 man/parseModule.Rd                                               |   54 
 man/patchSize.Rd                                                 |   30 
 man/plotGrob.Rd                                                  |  215 
 man/prepareRaster.Rd                                             |   66 
 man/priority.Rd                                                  |   64 
 man/randomPolygons.Rd                                            |  109 
 man/rasterToMemory.Rd                                            |   62 
 man/rasterizeReduce.Rd                                           |  120 
 man/rings.Rd                                                     |only
 man/rndstr.Rd                                                    |  130 
 man/saveFiles.Rd                                                 |  138 
 man/scheduleEvent.Rd                                             |  132 
 man/setColors.Rd                                                 |  194 
 man/shine.Rd                                                     |  136 
 man/show-method.Rd                                               |   32 
 man/sim2gantt.Rd                                                 |   72 
 man/simDeps-class.Rd                                             |   44 
 man/simInit.Rd                                                   |  390 
 man/simList-accessors-envir.Rd                                   |   96 
 man/simList-accessors-events.Rd                                  |  194 
 man/simList-accessors-inout.Rd                                   |  610 -
 man/simList-accessors-modules.Rd                                 |  174 
 man/simList-accessors-objects.Rd                                 |  158 
 man/simList-accessors-params.Rd                                  |  300 
 man/simList-accessors-paths.Rd                                   |  210 
 man/simList-accessors-times.Rd                                   |  343 
 man/simList-class.Rd                                             |  222 
 man/simList_-class.Rd                                            |   46 
 man/sortDotsFirst.Rd                                             |   48 
 man/spades-classes.Rd                                            |   90 
 man/spades.Rd                                                    |  214 
 man/spadesEnv.Rd                                                 |   30 
 man/spadesGrob-class.Rd                                          |  102 
 man/spadesMaps.Rd                                                |   50 
 man/spadesMouseClicks.Rd                                         |  136 
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Package rstan updated to version 2.10.1 with previous version 2.9.0-3 dated 2016-02-11

Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test, estimate, and analyze Stan models by accessing the header-only Stan library provided by the 'StanHeaders' package. The Stan project develops a probabilistic programming language that implements full Bayesian statistical inference via Markov Chain Monte Carlo, rough Bayesian inference via variational approximation, and (optionally penalized) maximum likelihood estimation via optimization. In all three cases, automatic differentiation is used to quickly and accurately evaluate gradients without burdening the user with the need to derive the partial derivatives.
Author: Jiqiang Guo [aut], Jonah Gabry [aut], Ben Goodrich [cre, aut], Daniel Lee [ctb], Krzysztof Sakrejda [ctb], Trustees of Columbia University [cph], Oleg Sklyar [cph] (R/cxxfunplus.R), The R Core Team [cph] (R/pairs.R), Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R), Hadley Wickham [cph] (R/rtools.R), Joel de Guzman [cph] (Boost), John Fletcher [cph] (Boost), Thomas Heller [cph] (Boost), Eric Niebler [cph] (Boost)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between rstan versions 2.9.0-3 dated 2016-02-11 and 2.10.1 dated 2016-06-24

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Package Fragman updated to version 1.0.5 with previous version 1.0.4 dated 2016-04-25

Title: Fragment Analysis in R
Description: Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file, and .txt files from Beckman CEQ 8000 system, both contain DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).
Author: Giovanny Covarrubias-Pazaran, Luis Diaz-Garcia, Brandon Schlautman, Walter Salazar, Juan Zalapa.
Maintainer: Giovanny Covarrubias-Pazaran <covarrubiasp@wisc.edu>

Diff between Fragman versions 1.0.4 dated 2016-04-25 and 1.0.5 dated 2016-06-24

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Package chunked updated to version 0.3 with previous version 0.2.1 dated 2016-04-07

Title: Chunkwise Text-File Processing for 'dplyr'
Description: Text data can be processed chunkwise using 'dplyr' commands. These are recorded and executed per data chunk, so large files can be processed with limited memory using the 'LaF' package.
Author: Edwin de Jonge
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>

Diff between chunked versions 0.2.1 dated 2016-04-07 and 0.3 dated 2016-06-24

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More information about chunked at CRAN
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New package dlstats with initial version 0.0.5
Package: dlstats
Title: Download Stats of R Packages
Version: 0.0.5
Authors@R: c(person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre")) )
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: Monthly download stats of 'CRAN' and 'Bioconductor' packages. Download stats of 'CRAN' packages is from the 'RStudio' 'CRAN mirror', see <http://cranlogs.r-pkg.org>. 'Bioconductor' package download stats is at <https://bioconductor.org/packages/stats/>.
Depends: R (>= 3.3.0)
Imports: jsonlite, magrittr, utils
Suggests: ggplot2, knitr, tidyr
License: Artistic-2.0
VignetteBuilder: knitr
ByteCompile: true
Encoding: UTF-8
LazyData: true
URL: https://github.com/GuangchuangYu/dlstats
BugReports: https://github.com/GuangchuangYu/dlstats/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-23 01:35:10 UTC; guangchuangyu
Author: Guangchuang Yu [aut, cre]
Repository: CRAN
Date/Publication: 2016-06-24 20:17:40

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New package BTR with initial version 1.2.3
Package: BTR
Type: Package
Title: Training and Analysing Asynchronous Boolean Models
Version: 1.2.3
Date: 2016-6-23
Author: Chee Yee Lim
Maintainer: Chee Yee Lim <cyl49@cam.ac.uk>
Description: Tools for inferring asynchronous Boolean models from single-cell expression data.
Depends: R (>= 3.0.3), methods
Imports: parallel, Rcpp (>= 0.11.4), foreach (>= 1.4.1), doParallel (>= 1.0.8), poweRlaw (>= 0.30.0), diptest (>= 0.75-7), igraph (>= 1.0.1), infotheo (>= 1.2.0), entropy (>= 1.2.1)
LinkingTo: Rcpp
License: GPL-3
LazyData: true
Suggests: bnlearn (>= 3.8.1), knitr, rmarkdown
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-06-24 15:44:44 UTC; cylim
Repository: CRAN
Date/Publication: 2016-06-24 19:13:51

More information about BTR at CRAN
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Package broom updated to version 0.4.1 with previous version 0.4.0 dated 2015-11-30

Title: Convert Statistical Analysis Objects into Tidy Data Frames
Description: Convert statistical analysis objects from R into tidy data frames, so that they can more easily be combined, reshaped and otherwise processed with tools like 'dplyr', 'tidyr' and 'ggplot2'. The package provides three S3 generics: tidy, which summarizes a model's statistical findings such as coefficients of a regression; augment, which adds columns to the original data such as predictions, residuals and cluster assignments; and glance, which provides a one-row summary of model-level statistics.
Author: David Robinson [aut, cre], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb]
Maintainer: David Robinson <admiral.david@gmail.com>

Diff between broom versions 0.4.0 dated 2015-11-30 and 0.4.1 dated 2016-06-24

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Package unfoldr updated to version 0.5.8 with previous version 0.5.7 dated 2016-06-24

Title: Stereological Unfolding for Spheroidal Particles
Description: Stereological unfolding as implemented in this package consists in the estimation of the joint size-shape-orientation distribution of spheroidal shaped particles based on the same measured quantities of corresponding planar section profiles. A single trivariate discretized version of the (stereological) integral equation in the case of prolate and oblate spheroids is solved numerically by the EM algorithm. The estimation of diameter distribution of spheres from planar sections (Wicksell's corpuscle problem) is also implemented. Further, the package provides routines for the simulation of a Poisson germ- grain process with either spheroids, spherocylinders or spheres as grains together with functions for planar sections. For the purpose of exact simulation a bivariate size-shape distribution is implemented.
Author: Markus Baaske [aut, cre], Felix Ballani [ctb]
Maintainer: Markus Baaske <markus.baaske@math.tu-freiberg.de>

Diff between unfoldr versions 0.5.7 dated 2016-06-24 and 0.5.8 dated 2016-06-24

 DESCRIPTION                 |    6 -
 MD5                         |   20 +++---
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 11 files changed, 218 insertions(+), 230 deletions(-)

More information about unfoldr at CRAN
Permanent link

Package rtson updated to version 1.2 with previous version 1.1 dated 2015-12-02

Title: Typed JSON
Description: TSON, short for Typed JSON, is a binary-encoded serialization of JSON like document that support JavaScript typed data (https://github.com/tercen/TSON).
Author: Alexandre Maurel
Maintainer: Alexandre Maurel <alexandre.maurel@gmail.com>

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 tests/testthat/test_rtson.R |    2 
 11 files changed, 171 insertions(+), 110 deletions(-)

More information about rtson at CRAN
Permanent link

Package dplyr updated to version 0.5.0 with previous version 0.4.3 dated 2015-09-01

Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
Author: Hadley Wickham [aut, cre], Romain Francois [aut], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package devtools updated to version 1.12.0 with previous version 1.11.1 dated 2016-04-21

Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut, cre], Winston Chang [aut], RStudio [cph], R Core team [ctb] (Some namespace and vignette code extracted from base R)
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package BerlinData (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-12-08 1.0.1
2014-05-11 1.0.0

Permanent link
Package xml2 updated to version 1.0.0 with previous version 0.1.2 dated 2015-09-01

Title: Parse XML
Description: Work with XML files using a simple, consistent interface. Built on top of the 'libxml2' C library.
Author: Hadley Wickham [aut, cre], James Hester [aut], Jeroen Ooms [ctb], RStudio [cph], R Foundation [ctb] (Copy of R-project homepage cached as example)
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package searchConsoleR updated to version 0.2.1 with previous version 0.2.0 dated 2016-04-03

Title: Google Search Console R Client
Description: Provides an interface with the Google Search Console, formally called Google Webmaster Tools.
Author: Mark Edmondson [aut, cre], Jennifer Bryan [ctb]
Maintainer: Mark Edmondson <r@sunholo.com>

Diff between searchConsoleR versions 0.2.0 dated 2016-04-03 and 0.2.1 dated 2016-06-24

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New package NoiseFiltersR with initial version 0.1.0
Package: NoiseFiltersR
Type: Package
Title: Label Noise Filters for Data Preprocessing in Classification
Version: 0.1.0
Authors@R: c( person("Pablo", "Morales", email = "pablomoralvarez@gmail.com", role = c("aut")), person("Julian", "Luengo", email = "julianlm@decsai.ugr.es", role = c("aut","cre")), person("Luis P.F.", "Garcia", role = c("aut")), person("Ana C.", "Lorena", role = c("aut")), person("Andre C.P.L.F.", "de Carvalho", role = c("aut")), person("Francisco", "Herrera", role = c("aut")))
Description: An extensive implementation of state-of-the-art and classical algorithms to preprocess label noise in classification problems.
License: GPL-3
LazyData: TRUE
Imports: RWeka, kknn, nnet, caret, e1071, rpart, randomForest, MASS, rJava, stats, utils
Depends: R (>= 3.3.0)
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-06-24 10:17:13 UTC; pablo
Author: Pablo Morales [aut], Julian Luengo [aut, cre], Luis P.F. Garcia [aut], Ana C. Lorena [aut], Andre C.P.L.F. de Carvalho [aut], Francisco Herrera [aut]
Maintainer: Julian Luengo <julianlm@decsai.ugr.es>
Repository: CRAN
Date/Publication: 2016-06-24 12:34:50

More information about NoiseFiltersR at CRAN
Permanent link

Package extraDistr updated to version 1.7.2 with previous version 1.7.1 dated 2016-06-18

Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function and random generation for a number of univariate and multivariate distributions.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>

Diff between extraDistr versions 1.7.1 dated 2016-06-18 and 1.7.2 dated 2016-06-24

 extraDistr-1.7.1/extraDistr/src/half-distributions.cpp                  |only
 extraDistr-1.7.2/extraDistr/DESCRIPTION                                 |    8 
 extraDistr-1.7.2/extraDistr/MD5                                         |  148 +++++-----
 extraDistr-1.7.2/extraDistr/NEWS.md                                     |    7 
 extraDistr-1.7.2/extraDistr/R/RcppExports.R                             |   48 ++-
 extraDistr-1.7.2/extraDistr/R/beta-binomial-distribution.R              |   12 
 extraDistr-1.7.2/extraDistr/R/beta-negative-binomial-distribution.R     |   16 -
 extraDistr-1.7.2/extraDistr/R/beta-prime-distribution.R                 |   10 
 extraDistr-1.7.2/extraDistr/R/bivariate-poisson-distribution.R          |    4 
 extraDistr-1.7.2/extraDistr/R/dirichlet-distribution.R                  |    3 
 extraDistr-1.7.2/extraDistr/R/dirichlet-multinomial-distribution.R      |    4 
 extraDistr-1.7.2/extraDistr/R/discrete-normal-distribution.R            |    4 
 extraDistr-1.7.2/extraDistr/R/discrete-uniform-distribution.R           |   10 
 extraDistr-1.7.2/extraDistr/R/discrete-weibull-distribution.R           |    4 
 extraDistr-1.7.2/extraDistr/R/frechet-distribution.R                    |   10 
 extraDistr-1.7.2/extraDistr/R/gamma-poisson-distribution.R              |   12 
 extraDistr-1.7.2/extraDistr/R/gev-distribution.R                        |   20 -
 extraDistr-1.7.2/extraDistr/R/gpd-distribution.R                        |   18 -
 extraDistr-1.7.2/extraDistr/R/gumbel-distribution.R                     |   10 
 extraDistr-1.7.2/extraDistr/R/half-cauchy-distribution.R                |    8 
 extraDistr-1.7.2/extraDistr/R/half-normal-distribution.R                |    8 
 extraDistr-1.7.2/extraDistr/R/half-t-distribution.R                     |    8 
 extraDistr-1.7.2/extraDistr/R/inverse-gamma-distribution.R              |    4 
 extraDistr-1.7.2/extraDistr/R/kumaraswamy-distribution.R                |    4 
 extraDistr-1.7.2/extraDistr/R/laplace-distribution.R                    |   14 
 extraDistr-1.7.2/extraDistr/R/mixture-of-normal-distributions.R         |    2 
 extraDistr-1.7.2/extraDistr/R/mixture-of-poisson-distributions.R        |    2 
 extraDistr-1.7.2/extraDistr/R/pareto-distribution.R                     |    4 
 extraDistr-1.7.2/extraDistr/R/proportion-distribution.R                 |    8 
 extraDistr-1.7.2/extraDistr/R/skellam-distribution.R                    |    2 
 extraDistr-1.7.2/extraDistr/R/truncated-normal-distribution.R           |   10 
 extraDistr-1.7.2/extraDistr/man/BetaBinom.Rd                            |   10 
 extraDistr-1.7.2/extraDistr/man/BetaNegBinom.Rd                         |   16 -
 extraDistr-1.7.2/extraDistr/man/BetaPrime.Rd                            |   10 
 extraDistr-1.7.2/extraDistr/man/BivPoiss.Rd                             |    4 
 extraDistr-1.7.2/extraDistr/man/DirMnom.Rd                              |    4 
 extraDistr-1.7.2/extraDistr/man/Dirichlet.Rd                            |    2 
 extraDistr-1.7.2/extraDistr/man/DiscrWeibull.Rd                         |    4 
 extraDistr-1.7.2/extraDistr/man/DiscreteNormal.Rd                       |    4 
 extraDistr-1.7.2/extraDistr/man/DiscreteUniform.Rd                      |    7 
 extraDistr-1.7.2/extraDistr/man/Frechet.Rd                              |   10 
 extraDistr-1.7.2/extraDistr/man/GEV.Rd                                  |   20 -
 extraDistr-1.7.2/extraDistr/man/GPD.Rd                                  |   18 -
 extraDistr-1.7.2/extraDistr/man/GammaPoiss.Rd                           |   12 
 extraDistr-1.7.2/extraDistr/man/Gumbel.Rd                               |   10 
 extraDistr-1.7.2/extraDistr/man/InvGamma.Rd                             |    4 
 extraDistr-1.7.2/extraDistr/man/Kumaraswamy.Rd                          |    4 
 extraDistr-1.7.2/extraDistr/man/Laplace.Rd                              |   14 
 extraDistr-1.7.2/extraDistr/man/NormalMix.Rd                            |    2 
 extraDistr-1.7.2/extraDistr/man/Pareto.Rd                               |    4 
 extraDistr-1.7.2/extraDistr/man/PoissonMix.Rd                           |    2 
 extraDistr-1.7.2/extraDistr/man/PropBeta.Rd                             |    8 
 extraDistr-1.7.2/extraDistr/man/Skellam.Rd                              |    2 
 extraDistr-1.7.2/extraDistr/man/TruncNormal.Rd                          |   10 
 extraDistr-1.7.2/extraDistr/src/RcppExports.cpp                         |  138 ++++++++-
 extraDistr-1.7.2/extraDistr/src/beta-binomial-distribution.cpp          |   10 
 extraDistr-1.7.2/extraDistr/src/beta-negative-binomial-distribution.cpp |   10 
 extraDistr-1.7.2/extraDistr/src/birnbaum-saunders-distribution.cpp      |    2 
 extraDistr-1.7.2/extraDistr/src/categorical-distribution.cpp            |   72 ++--
 extraDistr-1.7.2/extraDistr/src/const.h                                 |    7 
 extraDistr-1.7.2/extraDistr/src/dirichlet-distribution.cpp              |    2 
 extraDistr-1.7.2/extraDistr/src/discrete-uniform-distribution.cpp       |   15 -
 extraDistr-1.7.2/extraDistr/src/gamma-poisson-distribution.cpp          |   10 
 extraDistr-1.7.2/extraDistr/src/half-cauchy-distribution.cpp            |only
 extraDistr-1.7.2/extraDistr/src/half-normal-distribution.cpp            |only
 extraDistr-1.7.2/extraDistr/src/half-t-distribution.cpp                 |only
 extraDistr-1.7.2/extraDistr/src/huber-distribution.cpp                  |   15 -
 extraDistr-1.7.2/extraDistr/src/logarithmic-series-distribution.cpp     |    5 
 extraDistr-1.7.2/extraDistr/src/mixture-of-normal-distributions.cpp     |   18 -
 extraDistr-1.7.2/extraDistr/src/mixture-of-poisson-distributions.cpp    |   18 -
 extraDistr-1.7.2/extraDistr/src/multinomial-distribution.cpp            |   14 
 extraDistr-1.7.2/extraDistr/src/non-standard-t-distribution.cpp         |    2 
 extraDistr-1.7.2/extraDistr/src/non-standart-beta-distribution.cpp      |    2 
 extraDistr-1.7.2/extraDistr/src/pareto-distribution.cpp                 |    2 
 extraDistr-1.7.2/extraDistr/src/proportion-distribution.cpp             |    2 
 extraDistr-1.7.2/extraDistr/src/shared.cpp                              |    2 
 extraDistr-1.7.2/extraDistr/src/slash-distribution.cpp                  |    5 
 77 files changed, 554 insertions(+), 400 deletions(-)

More information about extraDistr at CRAN
Permanent link

New package conclust with initial version 1.0
Package: conclust
Type: Package
Title: Pairwise Constraints Clustering
Version: 1.0
Date: 2016-06-22
Author: Tran Khanh Hiep, Nguyen Minh Duc
Maintainer: Tran Khanh Hiep <hieptkse03059@fpt.edu.vn>
Description: There are 3 main functions in this package: ckmeans(), lcvqe() and mpckm(). They take an unlabeled dataset and two lists of must-link and cannot-link constraints as input and produce a clustering as output.
License: GPL-3
NeedsCompilation: no
Packaged: 2016-06-24 10:06:02 UTC; Hiep
Repository: CRAN
Date/Publication: 2016-06-24 12:20:11

More information about conclust at CRAN
Permanent link

Package XLConnectJars updated to version 0.2-12 with previous version 0.2-9 dated 2014-08-14

Title: JAR Dependencies for the XLConnect Package
Description: Provides external JAR dependencies for the XLConnect package.
Author: Mirai Solutions GmbH [aut], Martin Studer [cre], The Apache Software Foundation [ctb, cph] (Apache POI, Apache XMLBeans)
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>

Diff between XLConnectJars versions 0.2-9 dated 2014-08-14 and 0.2-12 dated 2016-06-24

 XLConnectJars-0.2-12/XLConnectJars/DESCRIPTION                     |   14 +++++-----
 XLConnectJars-0.2-12/XLConnectJars/MD5                             |   12 ++++----
 XLConnectJars-0.2-12/XLConnectJars/NEWS                            |    3 ++
 XLConnectJars-0.2-12/XLConnectJars/R/onLoad.R                      |    2 -
 XLConnectJars-0.2-12/XLConnectJars/inst/java/ooxml-schemas-1.3.jar |only
 XLConnectJars-0.2-12/XLConnectJars/java/README                     |    2 -
 XLConnectJars-0.2-12/XLConnectJars/man/XLConnectJars-package.Rd    |    5 +--
 XLConnectJars-0.2-9/XLConnectJars/inst/java/ooxml-schemas-1.1.jar  |only
 8 files changed, 20 insertions(+), 18 deletions(-)

More information about XLConnectJars at CRAN
Permanent link

Package XLConnect updated to version 0.2-12 with previous version 0.2-11 dated 2015-03-01

Title: Excel Connector for R
Description: Provides comprehensive functionality to read, write and format Excel data.
Author: Mirai Solutions GmbH [aut], Martin Studer [cre], The Apache Software Foundation [ctb, cph] (Apache POI, Apache Commons Codec), Stephen Colebourne [ctb, cph] (Joda-Time Java library), Graph Builder [ctb, cph] (Curvesapi Java library)
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>

Diff between XLConnect versions 0.2-11 dated 2015-03-01 and 0.2-12 dated 2016-06-24

 XLConnect-0.2-11/XLConnect/inst/java/XLConnect-0.2-11.jar                      |only
 XLConnect-0.2-11/XLConnect/inst/java/commons-codec-1.9.jar                     |only
 XLConnect-0.2-11/XLConnect/inst/java/poi-3.12-beta1.jar                        |only
 XLConnect-0.2-11/XLConnect/inst/java/poi-ooxml-3.12-beta1.jar                  |only
 XLConnect-0.2-12/XLConnect/DESCRIPTION                                         |   19 
 XLConnect-0.2-12/XLConnect/MD5                                                 |  276 +++++----
 XLConnect-0.2-12/XLConnect/NAMESPACE                                           |    1 
 XLConnect-0.2-12/XLConnect/NEWS                                                |   17 
 XLConnect-0.2-12/XLConnect/R/XLConnectSettings.R                               |    6 
 XLConnect-0.2-12/XLConnect/R/aref.R                                            |    2 
 XLConnect-0.2-12/XLConnect/R/aref2idx.R                                        |    2 
 XLConnect-0.2-12/XLConnect/R/cellstyle.R                                       |    2 
 XLConnect-0.2-12/XLConnect/R/cellstyle.operators.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/cellstyle.setBorder.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/cellstyle.setDataFormat.R                         |    2 
 XLConnect-0.2-12/XLConnect/R/cellstyle.setFillBackgroundColor.R                |    2 
 XLConnect-0.2-12/XLConnect/R/cellstyle.setFillForegroundColor.R                |    2 
 XLConnect-0.2-12/XLConnect/R/cellstyle.setFillPattern.R                        |    2 
 XLConnect-0.2-12/XLConnect/R/cellstyle.setWrapText.R                           |    2 
 XLConnect-0.2-12/XLConnect/R/classToXlcType.R                                  |    2 
 XLConnect-0.2-12/XLConnect/R/col2idx.R                                         |    2 
 XLConnect-0.2-12/XLConnect/R/constants.R                                       |    2 
 XLConnect-0.2-12/XLConnect/R/cref2idx.R                                        |    2 
 XLConnect-0.2-12/XLConnect/R/dataframeFromJava.R                               |    2 
 XLConnect-0.2-12/XLConnect/R/dataframeToJava.R                                 |    5 
 XLConnect-0.2-12/XLConnect/R/extractRownames.R                                 |    6 
 XLConnect-0.2-12/XLConnect/R/extractSheetName.R                                |    2 
 XLConnect-0.2-12/XLConnect/R/getColSubset.R                                    |    2 
 XLConnect-0.2-12/XLConnect/R/idx2aref.R                                        |    2 
 XLConnect-0.2-12/XLConnect/R/idx2col.R                                         |    2 
 XLConnect-0.2-12/XLConnect/R/idx2cref.R                                        |    2 
 XLConnect-0.2-12/XLConnect/R/includeRownames.R                                 |    2 
 XLConnect-0.2-12/XLConnect/R/jTryCatch.R                                       |    2 
 XLConnect-0.2-12/XLConnect/R/loadWorkbook.R                                    |    6 
 XLConnect-0.2-12/XLConnect/R/mirai.R                                           |    2 
 XLConnect-0.2-12/XLConnect/R/normalizeDataframe.R                              |    2 
 XLConnect-0.2-12/XLConnect/R/onAttach.R                                        |    2 
 XLConnect-0.2-12/XLConnect/R/onLoad.R                                          |    2 
 XLConnect-0.2-12/XLConnect/R/readNamedRegionFromFile.R                         |    2 
 XLConnect-0.2-12/XLConnect/R/readWorksheetFromFile.R                           |    2 
 XLConnect-0.2-12/XLConnect/R/rg2idx.R                                          |    2 
 XLConnect-0.2-12/XLConnect/R/with.workbook.R                                   |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.R                                        |   88 +--
 XLConnect-0.2-12/XLConnect/R/workbook.addImage.R                               |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.appendNamedRegion.R                      |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.appendWorksheet.R                        |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.clearNamedRegion.R                       |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.clearRange.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.clearRangeFromReference.R                |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.clearSheet.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.cloneSheet.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.createCellStyle.R                        |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.createFreezePane.R                       |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.createName.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.createSheet.R                            |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.createSplitPane.R                        |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.existsName.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.existsSheet.R                            |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getActiveSheetIndex.R                    |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getActiveSheetName.R                     |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getBoundingBox.R                         |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getCellFormula.R                         |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getCellStyle.R                           |    2 
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 XLConnect-0.2-12/XLConnect/R/workbook.getForceFormulaRecalculation.R           |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getLastColumn.R                          |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getLastRow.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getReferenceCoordinates.R                |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getReferenceCoordinatesForName.R         |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getReferenceCoordinatesForTable.R        |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getReferenceFormula.R                    |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getSheetPos.R                            |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getSheets.R                              |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.getTables.R                              |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.hideSheet.R                              |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.isSheetHidden.R                          |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.isSheetVeryHidden.R                      |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.isSheetVisible.R                         |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.mergeCells.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.onErrorCell.R                            |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.operators.R                              |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.print.R                                  |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.readNamedRegion.R                        |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.readTable.R                              |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.readWorksheet.R                          |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.removeName.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.removePane.R                             |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.removeSheet.R                            |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.renameSheet.R                            |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.saveWorkbook.R                           |    2 
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 XLConnect-0.2-12/XLConnect/R/workbook.setAutoFilter.R                          |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setCellFormula.R                         |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setCellStyle.R                           |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setCellStyleForType.R                    |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setColumnWidth.R                         |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setDataFormatForType.R                   |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setForceFormulaRecalculation.R           |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setMissingValue.R                        |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setRowHeight.R                           |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setSheetColor.R                          |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.setSheetPos.R                            |    2 
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 XLConnect-0.2-12/XLConnect/R/workbook.setStyleNamePrefix.R                     |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.show.R                                   |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.summary.R                                |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.unhideSheet.R                            |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.unmergeCells.R                           |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.writeNamedRegion.R                       |    2 
 XLConnect-0.2-12/XLConnect/R/workbook.writeWorksheet.R                         |    2 
 XLConnect-0.2-12/XLConnect/R/wrapList.R                                        |    2 
 XLConnect-0.2-12/XLConnect/R/writeNamedRegionToFile.R                          |    2 
 XLConnect-0.2-12/XLConnect/R/writeWorksheetToFile.R                            |    2 
 XLConnect-0.2-12/XLConnect/R/xlcCall.R                                         |    2 
 XLConnect-0.2-12/XLConnect/R/xlcDump.R                                         |    2 
 XLConnect-0.2-12/XLConnect/R/xlcEdit.R                                         |    2 
 XLConnect-0.2-12/XLConnect/R/xlcFreeMemory.R                                   |    2 
 XLConnect-0.2-12/XLConnect/R/xlcMemoryReport.R                                 |    2 
 XLConnect-0.2-12/XLConnect/R/xlcRestore.R                                      |    2 
 XLConnect-0.2-12/XLConnect/README.md                                           |    8 
 XLConnect-0.2-12/XLConnect/build/vignette.rds                                  |binary
 XLConnect-0.2-12/XLConnect/inst/COPYRIGHTS                                     |    7 
 XLConnect-0.2-12/XLConnect/inst/doc/XLConnect.Rnw                              |   14 
 XLConnect-0.2-12/XLConnect/inst/doc/XLConnect.pdf                              |binary
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 XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookErrorCell.xlsx |binary
 XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.readNamedRegion.R     |    6 
 XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.readWorksheet.R       |   49 +
 XLConnect-0.2-12/XLConnect/inst/unitTests/runit.writeAndReadWorksheet.R        |  280 +++++-----
 XLConnect-0.2-12/XLConnect/java/README                                         |   10 
 XLConnect-0.2-12/XLConnect/man/XLConnect-package.Rd                            |    6 
 XLConnect-0.2-12/XLConnect/man/loadWorkbook.Rd                                 |    6 
 XLConnect-0.2-12/XLConnect/man/readWorksheet-methods.Rd                        |   12 
 XLConnect-0.2-12/XLConnect/man/workbook-class.Rd                               |  116 ++--
 XLConnect-0.2-12/XLConnect/vignettes/XLConnect.Rnw                             |   14 
 145 files changed, 649 insertions(+), 517 deletions(-)

More information about XLConnect at CRAN
Permanent link

New package VetResearchLMM with initial version 0.1.0
Package: VetResearchLMM
Type: Package
Title: Linear Mixed Models - An Introduction with Applications in Veterinary Research
Version: 0.1.0
Authors@R: c( person(c("Muhammad", "Yaseen"), email = "myaseen208@gmail.com", role = c("aut", "cre")) , person(c("Luc", "Duchateau"), email = "Luc.Duchateau@ugent.be", role = "ctb") , person(c("Paul", "Janssen"), email = "paul.janssen@uhasselt.be", role = "ctb") , person(c("John", "Rowlands"), email = " ", role = "ctb") )
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Description: R Codes and Datasets for Duchateau, L. and Janssen, P. and Rowlands, G. J. (1998). Linear Mixed Models. An Introduction with applications in Veterinary Research. International Livestock Research Institute.
Depends: R (>= 3.1)
Imports: ggplot2, lme4, nlme, lmerTest, multcomp
License: GPL-2
URL:
LazyData: TRUE
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-06-23 03:40:45 UTC; yaseen
Author: Muhammad Yaseen [aut, cre], Luc Duchateau [ctb], Paul Janssen [ctb], John Rowlands [ctb]
Repository: CRAN
Date/Publication: 2016-06-24 09:53:26

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Package timetools updated to version 1.8.0 with previous version 1.7.4 dated 2016-03-24

Title: Seasonal/Sequential (Instants/Durations, Even or not) Time Series
Description: Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time durations are handled. Both can be regularly or unevenly spaced (overlapping durations are allowed). Only POSIX* format are used for dates and times. The following classes are provided : 'POSIXcti', 'POSIXctp', 'TimeIntervalDataFrame', 'TimeInstantDataFrame', 'SubtimeDataFrame' ; methods to switch from a class to another and to modify the time support of series (hourly time series to daily time series for instance) are also defined. Tools provided can be used for instance to handle environmental monitoring data (not always produced on a regular time base).
Author: Vladislav Navel
Maintainer: Vladislav Navel <vnavel@yahoo.fr>

Diff between timetools versions 1.7.4 dated 2016-03-24 and 1.8.0 dated 2016-06-24

 DESCRIPTION               |    8 ++++----
 MD5                       |   12 ++++++------
 R/TimeInstantDataFrame.R  |   42 +++++++++++++++++++++++++++++++++++++++---
 R/TimeIntervalDataFrame.R |   42 +++++++++++++++++++++++++++++++++++++++---
 R/split.R                 |    4 ++--
 README                    |   10 ++++++++++
 man/timetools-package.Rd  |    4 ++--
 7 files changed, 102 insertions(+), 20 deletions(-)

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Package StanHeaders updated to version 2.10.0-2 with previous version 2.10.0 dated 2016-06-22

Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains no R code, vignettes, or function documentation. There is a shared object containing part of the CVODES library, but it is not accessible from R. StanHeaders is only useful for developers who want to utilize the LinkingTo directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or variational methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, templated statistical and linear algebra functions that can handle the automatically differentiable scalar types (and doubles, ints, etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut], Joshua Pritikin [ctb], Andrew Gelman [aut], Bob Carpenter [aut], Matt Hoffman [aut], Daniel Lee [aut], Michael Betancourt [aut], Marcus Brubaker [aut], Jiqiang Guo [aut], Peter Li [aut], Allen Riddell [aut], Marco Inacio [aut], Mitzi Morris [aut], Jeffrey Arnold [aut], Rob Goedman [aut], Brian Lau [aut], Rob Trangucci [aut], Jonah Gabry [aut], Alp Kucukelbir [aut], Robert Grant [aut], Dustin Tran [aut], Michael Malecki [aut], Yuanjun Gao [aut], Trustees of Columbia University [cph], Lawrence Livermore National Security [cph] (CVODES), The Regents of the University of California [cph] (CVODES), Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between StanHeaders versions 2.10.0 dated 2016-06-22 and 2.10.0-2 dated 2016-06-24

 StanHeaders-2.10.0-2/StanHeaders/DESCRIPTION                            |    8 
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New package synthACS with initial version 0.4.4
Package: synthACS
Title: Synthetic Microdata and Spatial MicroSimulation Modeling for ACS Data
Version: 0.4.4
Authors@R: person("Alex", "Whitworth",,email = "whitworth.alex@gmail.com", c("aut", "cre"))
Description: Firstly provides a wrapper to library(acs) to access numerous American Community Survey (ACS) base tables which may be of interest to many researchers. Secondly, it builds synthetic micro-datasets of ACS data at any specified geographic level with 10 default individual attributes. Thirdly, the package provides functionality for users to add additional ACS & non-ACS data attributes to micro-datasets based on macro population characteristics. And finally, the package also conducts spatial microsimulation modeling (SMSM) via simulated annealing. SMSM is conducted in parallel by default.
Depends: R (>= 3.2.3), acs (>= 1.2), data.table (>= 1.9.6)
Imports: Rcpp
License: MIT + file LICENSE
LazyData: true
Suggests: testthat, tigris (>= 0.3), sp (>= 1.2), leaflet (>= 1.0), shiny (>= 0.13), rgdal (>= 1.1)
RoxygenNote: 5.0.1
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2016-06-23 17:55:20 UTC; awhitworth
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>
Repository: CRAN
Date/Publication: 2016-06-24 09:53:55

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Package ranger updated to version 0.5.0 with previous version 0.4.0 dated 2016-04-07

Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high dimensional data. Ensembles of classification, regression, survival and probability prediction trees are supported. Data from genome-wide association studies can be analyzed efficiently. In addition to data frames, datasets of class 'gwaa.data' (R package 'GenABEL') can be directly analyzed.
Author: Marvin N. Wright
Maintainer: Marvin N. Wright <wright@imbs.uni-luebeck.de>

Diff between ranger versions 0.4.0 dated 2016-04-07 and 0.5.0 dated 2016-06-24

 DESCRIPTION                              |   20 -
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 NAMESPACE                                |    2 
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 51 files changed, 1496 insertions(+), 898 deletions(-)

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Package randomLCA updated to version 1.0-9 with previous version 1.0-8 dated 2016-05-20

Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken.beath@mq.edu.au>

Diff between randomLCA versions 1.0-8 dated 2016-05-20 and 1.0-9 dated 2016-06-24

 DESCRIPTION                |   12 -
 MD5                        |   28 +--
 NAMESPACE                  |    1 
 R/fitAdaptRandom.R         |   57 ++++---
 R/fitAdaptRandom2.R        |   79 ++++++----
 R/fitFixed.R               |  345 ++++++++++++++++++++++-----------------------
 R/outcomeProbs.R           |   12 -
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 build/vignette.rds         |binary
 inst/NEWS                  |   12 +
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 src/bernoulliprobrandom.c  |   18 +-
 src/bernoulliprobrandom2.c |   18 +-
 src/lcemalgorith.c         |   21 +-
 15 files changed, 340 insertions(+), 285 deletions(-)

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Package overlapping updated to version 1.3 with previous version 1.2 dated 2016-02-08

Title: Estimation of Overlapping in Empirical Distributions
Description: Functions for estimating the overlapping area of two or more empirical distributions.
Author: Massimiliano Pastore
Maintainer: Massimiliano Pastore <massimiliano.pastore@unipd.it>

Diff between overlapping versions 1.2 dated 2016-02-08 and 1.3 dated 2016-06-24

 DESCRIPTION       |    8 ++++----
 MD5               |   12 ++++++------
 NEWS              |    6 ++++++
 R/final.plot.R    |   10 ++++++----
 R/overlap.R       |    7 ++++---
 man/cutnumeric.Rd |    2 +-
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 7 files changed, 28 insertions(+), 18 deletions(-)

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Package mirtCAT updated to version 0.9 with previous version 0.8 dated 2016-02-24

Title: Computerized Adaptive Testing with Multidimensional Item Response Theory
Description: Provides tools to generate an HTML interface for creating adaptive and non-adaptive educational and psychological tests using the shiny package. Suitable for applying unidimensional and multidimensional computerized adaptive tests using item response theory methodology and for creating simple questionnaires forms to collect response data directly in R. Package also contains tools useful for performing Monte Carlo simulations for studying the behaviour of computerized adaptive test banks.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>

Diff between mirtCAT versions 0.8 dated 2016-02-24 and 0.9 dated 2016-06-24

 DESCRIPTION                         |   12 ++---
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 R/findNextCATItem.R                 |   29 ++++++++-----
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 R/mirtCAT.R                         |    5 ++
 R/selection_criteria.R              |   74 +++++++++-------------------------
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 tests/GUI-tests/GUI-tests.R         |    5 ++
 tests/tests/test-mirtCAT_classify.R |   10 ++--
 tests/tests/test-mirtCAT_multi.R    |   11 +----
 tests/tests/test-mirtCAT_ordered.R  |   20 ++++-----
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 19 files changed, 178 insertions(+), 160 deletions(-)

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Package mirt updated to version 1.18 with previous version 1.17.1 dated 2016-04-27

Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using unidimensional and multidimensional latent trait models under the Item Response Theory paradigm. Exploratory and confirmatory models can be estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory bi-factor and two-tier analyses are available for modeling item testlets. Multiple group analysis and mixed effects designs also are available for detecting differential item and test functioning as well as modelling item and person covariates.
Author: Phil Chalmers [aut, cre, cph], Joshua Pritikin [ctb], Alexander Robitzsch [ctb], Mateusz Zoltak [ctb], KwonHyun Kim [ctb], Carl F. Falk [ctb], Adam Meade [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>

Diff between mirt versions 1.17.1 dated 2016-04-27 and 1.18 dated 2016-06-24

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 NAMESPACE                           |    2 
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 R/02-item_methods.R                 |  187 +++++++++++++++++++++---------------
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 tests/tests/test-04-multipleGroup.R |   40 +++----
 tests/tests/test-06-confmirtTwo.R   |   14 +-
 tests/tests/test-07-mixedmirt.R     |   34 +++---
 tests/tests/test-09-mirt.model.R    |    5 
 tests/tests/test-10-extras.R        |   31 ++---
 tests/tests/test-11-discrete.R      |   17 +--
 51 files changed, 964 insertions(+), 557 deletions(-)

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New package invgamma with initial version 0.0
Package: invgamma
Type: Package
Title: The Inverse Gamma Distribution
Version: 0.0
URL: https://github.com/dkahle/invgamma
BugReports: https://github.com/dkahle/invgamma/issues
Authors@R: c( person("David", "Kahle", email = "david.kahle@gmail.com", role = c("aut", "cre", "cph")), person("James", "Stamey", email = "james_stamey@baylor.edu", role = c("aut", "cph")) )
Description: Standard distribution functions for the inverse gamma distribution, wrapping those for the gamma distribution that are already provided in the stats package.
License: GPL-2
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-23 20:29:09 UTC; david_kahle
Author: David Kahle [aut, cre, cph], James Stamey [aut, cph]
Maintainer: David Kahle <david.kahle@gmail.com>
Repository: CRAN
Date/Publication: 2016-06-24 09:53:42

More information about invgamma at CRAN
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Package future updated to version 1.0.0 with previous version 0.15.0 dated 2016-06-14

Title: A Future API for R
Description: A Future API for R is provided. In programming, a future is an abstraction for a value that may be available at some point in the future. The state of a future can either be unresolved or resolved. As soon as it is resolved, the value is available. Futures are useful constructs in for instance concurrent evaluation, e.g. parallel processing and distributed processing on compute clusters. The purpose of this package is to provide a lightweight interface for using futures in R. Functions 'future()' and 'value()' exist for creating futures and requesting their values, e.g. 'f <- future({ mandelbrot(-0.75, 0, side=3) })' and 'v <- value(f)'. The 'resolved()' function can be used to check if a future is resolved or not. An infix assignment operator '%<-%' exists for creating futures whose values are accessible by the assigned variables (as promises), e.g. 'v %<-% { mandelbrot(-0.75, 0, side=3) }'. This package implements synchronous "lazy" and "eager" futures, and asynchronous "multicore", "multisession" and ad hoc "cluster" futures. Globals variables and functions are automatically identified and exported. Required packages are attached in external R sessions whenever needed. All types of futures are designed to behave the same such that the exact same code work regardless of futures used or number of cores, background sessions or cluster nodes available. Additional types of futures are provided by other packages enhancing this package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between future versions 0.15.0 dated 2016-06-14 and 1.0.0 dated 2016-06-24

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 future-1.0.0/future/tests/nbrOfWorkers.R                     |   13 
 future-1.0.0/future/tests/nested_futures,mc.cores.R          |   10 
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 future-1.0.0/future/tests/utils.R                            |   66 ++-
 future-1.0.0/future/tests/uuid.R                             |   14 
 future-1.0.0/future/tests/whichIndex.R                       |    5 
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 81 files changed, 1454 insertions(+), 1063 deletions(-)

More information about future at CRAN
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Package DrBats updated to version 0.1.4 with previous version 0.1.3 dated 2016-05-18

Title: Data Representation: Bayesian Approach That's Sparse
Description: Feed longitudinal data into a Bayesian Latent Factor Model to obtain a low-rank representation. Parameters are estimated using a Hamiltonian Monte Carlo algorithm with STAN. See G. Weinrott, B. Fontez, N. Hilgert and S. Holmes, "Bayesian Latent Factor Model for Functional Data Analysis", Actes des JdS 2016.
Author: Gabrielle Weinrott [aut, cre], Brigitte Charnomordic [aut], Benedicte Fontez [aut], Nadine Hilgert [aut], Susan Holmes [aut]
Maintainer: Gabrielle Weinrott <gabrielle.weinrott@supagro.inra.fr>

Diff between DrBats versions 0.1.3 dated 2016-05-18 and 0.1.4 dated 2016-06-24

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Package DBEST updated to version 1.3 with previous version 1.2 dated 2016-06-15

Title: Detecting Breakpoints and Estimating Segments in Trend
Description: A program for analyzing vegetation time series, with two algorithms: 1) change detection algorithm that detects trend changes, determines their type (abrupt or non-abrupt), and estimates their timing, magnitude, number, and direction; 2) generalization algorithm that simplifies the temporal trend into main features. The user can set the number of major breakpoints or magnitude of greatest changes of interest for detection, and can control the generalization process by setting an additional parameter of generalization-percentage.
Author: Sadegh Jamali, Hristo Tomov
Maintainer: Hristo Tomov <tomov.hristo@gmail.com>

Diff between DBEST versions 1.2 dated 2016-06-15 and 1.3 dated 2016-06-24

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New package convey with initial version 0.1.0
Package: convey
Title: Income Concentration Analysis with Complex Survey Samples
Version: 0.1.0
Authors@R: c(person("Djalma", "Pessoa", email = "pessoad@gmail.com", role = c("aut","cre")), person("Anthony", "Damico", email= "ajdamico@gmail.com", role= "aut"), person("Guilherme", "Jacob", email= "guilhermejacob91@gmail.com", role= "aut"))
URL: https://github.com/djalmapessoa/convey
BugReports: https://github.com/djalmapessoa/convey/issues
Description: Variance estimation on indicators of income concentration and poverty using linearized or replication-based survey designs. Wrapper around the survey package.
Depends: R (>= 3.2.1)
Imports: survey, methods
License: GPL-3
LazyData: true
Suggests: testthat, knitr, rmarkdown, IC2, vardpoor, DBI, MonetDBLite, RODBC
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-23 19:06:24 UTC; owner
Author: Djalma Pessoa [aut, cre], Anthony Damico [aut], Guilherme Jacob [aut]
Maintainer: Djalma Pessoa <pessoad@gmail.com>
Repository: CRAN
Date/Publication: 2016-06-24 09:53:38

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Package ASMap updated to version 0.4-7 with previous version 0.4-5 dated 2015-08-17

Title: Linkage Map Construction using the MSTmap Algorithm
Description: Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).
Author: Julian Taylor <julian.taylor@adelaide.edu.au>, David Butler <david.butler@daff.qld.gov.au>.
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>

Diff between ASMap versions 0.4-5 dated 2015-08-17 and 0.4-7 dated 2016-06-24

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Package unfoldr updated to version 0.5.7 with previous version 0.5.6 dated 2016-06-22

Title: Stereological Unfolding for Spheroidal Particles
Description: Stereological unfolding as implemented in this package consists in the estimation of the joint size-shape-orientation distribution of spheroidal shaped particles based on the same measured quantities of corresponding planar section profiles. A single trivariate discretized version of the (stereological) integral equation in the case of prolate and oblate spheroids is solved numerically by the EM algorithm. The estimation of diameter distribution of spheres from planar sections (Wicksell's corpuscle problem) is also implemented. Further, the package provides routines for the simulation of a Poisson germ- grain process with either spheroids, spherocylinders or spheres as grains together with functions for planar sections. For the purpose of exact simulation a bivariate size-shape distribution is implemented.
Author: Markus Baaske [aut, cre], Felix Ballani [ctb]
Maintainer: Markus Baaske <markus.baaske@math.tu-freiberg.de>

Diff between unfoldr versions 0.5.6 dated 2016-06-22 and 0.5.7 dated 2016-06-24

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Package treeplyr updated to version 0.1.2 with previous version 0.1.1 dated 2016-03-31

Title: 'dplyr' Functionality for Matched Tree and Data Objects
Description: Matches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and data using 'dplyr'.
Author: Josef Uyeda
Maintainer: Josef Uyeda <josef.uyeda@gmail.com>

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Package precrec updated to version 0.4.0 with previous version 0.3.2 dated 2016-04-13

Title: Calculate Accurate Precision-Recall and Receiver Operator Characteristics Curves
Description: Accurate calculations and visualization of Precision-Recall and Receiver Operator Characteristics curves.
Author: Takaya Saito [aut, cre], Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>

Diff between precrec versions 0.3.2 dated 2016-04-13 and 0.4.0 dated 2016-06-24

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Package phytools updated to version 0.5-38 with previous version 0.5-20 dated 2016-03-06

Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: Package contains various functions for phylogenetic analysis. This functionality is concentrated in the phylogenetic analysis of comparative data from species. For example, the package includes functions for Bayesian and ML ancestral state estimation; visual simulation of trait evolution; fitting models of trait evolution with multiple Brownian rates and correlations; visualizing discrete and continuous character evolution using colors or projections into trait space; identifying the location of a change in the rate of character evolution on the tree; fast Brownian motion simulation and simulation under several other models of continuous trait evolution; fitting a model of correlated binary trait evolution; locating the position of a fossil or an recently extinct lineage on a tree using continuous character data with ML; plotting lineage accumulation through time, including across multiple trees (such as a Bayesian posterior sample); conducting an analysis called stochastic character mapping, in which character histories for a discrete trait are sampled from their posterior probability distribution under a model; conducting a multiple (i.e., partial) Mantel test; fitting a phylogenetic regression model with error in predictor and response variables; conducting a phylogenetic principal components analysis, a phylogenetic regression, a reduced major axis regression, a phylogenetic canonical correlation analysis, and a phylogenetic ANOVA; projecting a tree onto a geographic map; simulating discrete character histories on the tree; and fitting a model in which a discrete character evolves under the threshold model. In addition to this phylogenetic comparative method functionality, the package also contains functions for a wide range of other purposes in phylogenetic biology. For instance, functionality in this package includes (but is not restricted to): adding taxa to a tree (including randomly, everywhere, or automatically to genera); generating all bi- and multi-furcating trees for a set of taxa; reducing a phylogeny to its backbone tree; dropping tips or adding tips to special types of phylogenetic trees; exporting a tree as an XML file; converting a tree with a mapped character to a tree with singleton nodes and one character state per edge; estimating a phylogeny using the least squares method; simulating birth-death trees under a range of conditions; rerooting trees; a wide range of visualizations of trees; and a variety of other manipulations and analyses that phylogenetic biologists may find useful for their research.
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>

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Package lavaan.shiny updated to version 1.1 with previous version 1.0 dated 2016-03-04

Title: Latent Variable Analysis with Shiny
Description: Interactive shiny application for working with different kinds of latent variable analysis, with the 'lavaan' package. Graphical output for models are provided and different estimators are supported.
Author: W. Kyle Hamilton <kyle.hamilton@gmail.com>
Maintainer: W. Kyle Hamilton <kyle.hamilton@gmail.com>

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Package gutenbergr updated to version 0.1.2 with previous version 0.1.1 dated 2016-05-16

Title: Download and Process Public Domain Works from Project Gutenberg
Description: Download and process public domain works in the Project Gutenberg collection. Includes metadata for all Project Gutenberg works, so that they can be searched and retrieved.
Author: David Robinson [aut, cre]
Maintainer: David Robinson <admiral.david@gmail.com>

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Package camtrapR updated to version 0.99.2 with previous version 0.99.1 dated 2016-05-18

Title: Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
Description: Management of and data extraction from camera trap photographs in wildlife studies. The package provides a workflow for storing and sorting camera trap photographs, computes record databases and detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it provides simple mapping functions (number of species, number of independent species detections by station) and can visualise activity data.
Author: Juergen Niedballa [aut, cre], Alexandre Courtiol [aut], Rahel Sollmann [aut], John Mathai [ctb], Seth Timothy Wong [ctb], An The Truong Nguyen [ctb], Azlan bin Mohamed [ctb], Andrew Tilker [ctb], Andreas Wilting [ctb, ths]
Maintainer: Juergen Niedballa <niedballa@izw-berlin.de>

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Package binaryLogic updated to version 0.3.5 with previous version 0.3.4 dated 2016-03-29

Title: Binary Logic
Description: Convert to binary numbers (Base2). Shift, rotate, summary. Based on logical vector.
Author: Daniel Dörrhöfer <ddo@openmailbox.org>
Maintainer: Daniel Dörrhöfer <ddo@openmailbox.org>

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