Title: Rcmdr EcoVirtual Plugin
Description: A Rcmdr "plug-in" for the EcoVirtual package, designed primarily for teaching ecological models using simulations.
Author: Alexandre Adalardo de Oliveira and Paulo Inacio Prado <ecovirtualpackage@gmail.com>
Maintainer: Alexandre Adalardo de Oliveira <ecovirtualpackage@gmail.com>
Diff between RcmdrPlugin.EcoVirtual versions 0.1 dated 2014-08-19 and 1.0 dated 2016-06-30
DESCRIPTION | 12 MD5 | 14 NAMESPACE | 11 R/EcoVirtual.BioGeoMenu.R | 523 +++++++++++++++++---------------- R/EcoVirtual.MetaMenu.R | 524 +++++++++++++++++----------------- R/EcoVirtual.MultspMenu.R | 109 +++---- R/EcoVirtual.OneMenu.R | 324 +++++++++++---------- man/RcmdrPlugin.EcoVirtual.package.Rd | 4 8 files changed, 789 insertions(+), 732 deletions(-)
More information about RcmdrPlugin.EcoVirtual at CRAN
Permanent link
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov processes (POMPs, AKA stochastic dynamical systems, state-space models). 'pomp' provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a platform for the implementation of new inference methods.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.5 dated 2016-05-31 and 1.6 dated 2016-06-30
pomp-1.5/pomp/man/basic-probes.Rd |only pomp-1.5/pomp/man/csnippet.Rd |only pomp-1.5/pomp/man/particles-mif.Rd |only pomp-1.5/pomp/man/plugins.Rd |only pomp-1.5/pomp/man/pomp-fun.Rd |only pomp-1.5/pomp/man/pomp-methods.Rd |only pomp-1.5/pomp/man/simulate-pomp.Rd |only pomp-1.5/pomp/man/traj-match.Rd |only pomp-1.5/pomp/src/lpa.c |only pomp-1.5/pomp/src/tsir.c |only pomp-1.5/pomp/tests |only pomp-1.6/pomp/DESCRIPTION | 18 pomp-1.6/pomp/MD5 | 295 +++-------- pomp-1.6/pomp/NAMESPACE | 9 pomp-1.6/pomp/R/abc.R | 88 ++- pomp-1.6/pomp/R/abc_methods.R | 31 - pomp-1.6/pomp/R/bake.R | 2 pomp-1.6/pomp/R/basic_probes.R | 323 ++++++------ pomp-1.6/pomp/R/bsmc.R | 765 +++++++++++++++-------------- pomp-1.6/pomp/R/bsmc2.R | 471 +++++++++-------- pomp-1.6/pomp/R/bsplines.R | 19 pomp-1.6/pomp/R/builder.R | 40 + pomp-1.6/pomp/R/covmat.R | 73 +- pomp-1.6/pomp/R/dmeasure_pomp.R | 11 pomp-1.6/pomp/R/dprior_pomp.R | 1 pomp-1.6/pomp/R/dprocess_pomp.R | 2 pomp-1.6/pomp/R/eulermultinom.R | 33 + pomp-1.6/pomp/R/example.R | 14 pomp-1.6/pomp/R/generics.R | 9 pomp-1.6/pomp/R/initstate_pomp.R | 1 pomp-1.6/pomp/R/kalman.R |only pomp-1.6/pomp/R/kalman_methods.R |only pomp-1.6/pomp/R/mif.R | 236 ++++---- pomp-1.6/pomp/R/mif2.R | 178 ++++-- pomp-1.6/pomp/R/mif2_methods.R | 22 pomp-1.6/pomp/R/mif_methods.R | 476 +++++++++--------- pomp-1.6/pomp/R/minim.R | 128 ++-- pomp-1.6/pomp/R/nlf.R | 973 ++++++++++++++++++------------------- pomp-1.6/pomp/R/nlf_funcs.R | 36 - pomp-1.6/pomp/R/nlf_guts.R | 324 +++++------- pomp-1.6/pomp/R/nlf_objfun.R | 120 ++-- pomp-1.6/pomp/R/pfilter.R | 81 +-- pomp-1.6/pomp/R/plugins.R | 526 ++++++++++++-------- pomp-1.6/pomp/R/pmcmc.R | 617 +++++++++++------------ pomp-1.6/pomp/R/pmcmc_methods.R | 320 ++++++------ pomp-1.6/pomp/R/pomp.R | 716 ++++++++++----------------- pomp-1.6/pomp/R/pomp_fun.R | 285 +++++----- pomp-1.6/pomp/R/pomp_methods.R | 46 - pomp-1.6/pomp/R/probe.R | 43 + pomp-1.6/pomp/R/probe_match.R | 467 +++++++++-------- pomp-1.6/pomp/R/profile_design.R | 5 pomp-1.6/pomp/R/proposals.R | 238 ++++----- pomp-1.6/pomp/R/rmeasure_pomp.R | 2 pomp-1.6/pomp/R/rprior_pomp.R | 1 pomp-1.6/pomp/R/rprocess_pomp.R | 2 pomp-1.6/pomp/R/sannbox.R | 208 +++---- pomp-1.6/pomp/R/simulate_pomp.R | 268 +++++----- pomp-1.6/pomp/R/skeleton_pomp.R | 12 pomp-1.6/pomp/R/slice_design.R | 18 pomp-1.6/pomp/R/sobol.R | 59 +- pomp-1.6/pomp/R/spect.R | 631 ++++++++++++----------- pomp-1.6/pomp/R/spect_match.R | 441 ++++++++-------- pomp-1.6/pomp/R/traj_match.R | 273 +++++----- pomp-1.6/pomp/R/trajectory_pomp.R | 246 ++++----- pomp-1.6/pomp/build/partial.rdb |binary pomp-1.6/pomp/data/LondonYorke.rda |binary pomp-1.6/pomp/data/ewcitmeas.rda |binary pomp-1.6/pomp/data/ewmeas.rda |binary pomp-1.6/pomp/inst/NEWS | 61 ++ pomp-1.6/pomp/inst/NEWS.Rd | 33 + pomp-1.6/pomp/inst/include/pomp.h | 8 pomp-1.6/pomp/man/bake.Rd | 2 pomp-1.6/pomp/man/basic_probes.Rd |only pomp-1.6/pomp/man/blowflies.Rd | 3 pomp-1.6/pomp/man/bsplines.Rd | 2 pomp-1.6/pomp/man/eulermultinom.Rd | 2 pomp-1.6/pomp/man/kalman.Rd |only pomp-1.6/pomp/man/lowlevel.Rd | 22 pomp-1.6/pomp/man/nlf.Rd | 66 +- pomp-1.6/pomp/man/package.Rd | 42 + pomp-1.6/pomp/man/pmcmc.Rd | 3 pomp-1.6/pomp/man/pomp.Rd | 780 +++++++++++++++++------------ pomp-1.6/pomp/man/pomp_fun.Rd |only pomp-1.6/pomp/man/pomp_methods.Rd |only pomp-1.6/pomp/man/simulate_pomp.Rd |only pomp-1.6/pomp/man/traj_match.Rd |only pomp-1.6/pomp/src/SSA.f90 | 97 --- pomp-1.6/pomp/src/SSA_wrapper.c | 29 - pomp-1.6/pomp/src/bspline.c | 52 - pomp-1.6/pomp/src/dmeasure.c | 20 pomp-1.6/pomp/src/dprior.c | 2 pomp-1.6/pomp/src/dprocess.c | 12 pomp-1.6/pomp/src/dsobol.c | 4 pomp-1.6/pomp/src/euler.c | 20 pomp-1.6/pomp/src/eulermultinom.c | 11 pomp-1.6/pomp/src/initstate.c | 12 pomp-1.6/pomp/src/lookup_table.c | 30 - pomp-1.6/pomp/src/mif2.c | 4 pomp-1.6/pomp/src/ou2.c | 110 +--- pomp-1.6/pomp/src/partrans.c | 8 pomp-1.6/pomp/src/pfilter.c | 4 pomp-1.6/pomp/src/pomp.h | 8 pomp-1.6/pomp/src/pomp_fun.c | 6 pomp-1.6/pomp/src/pomp_internal.h | 7 pomp-1.6/pomp/src/probe.c | 14 pomp-1.6/pomp/src/probe_acf.c | 8 pomp-1.6/pomp/src/probe_marginal.c | 4 pomp-1.6/pomp/src/resample.c | 2 pomp-1.6/pomp/src/rmeasure.c | 16 pomp-1.6/pomp/src/rprior.c | 5 pomp-1.6/pomp/src/rprocess.c | 14 pomp-1.6/pomp/src/simulate.c | 20 pomp-1.6/pomp/src/sir.c | 3 pomp-1.6/pomp/src/skeleton.c | 12 pomp-1.6/pomp/src/trajectory.c | 64 +- pomp-1.6/pomp/src/userdata.c | 10 116 files changed, 6101 insertions(+), 5734 deletions(-)
Title: Non-Parametric Measures of Actigraphy Data
Description: Computes interdaily stability (IS), intradaily variability (IV) & the relative amplitude (RA) from actigraphy data as described in van Someren et al. (1999). Additionally, it also computes L5 (i.e. the 5 hours with lowest average actigraphy amplitude) and M10 (the 10 hours with highest average amplitude) as well as the respective start times. The flex versions will also compute the L-value for a user-defined number of minutes. IS describes the strength of coupling of a rhythm to supposedly stable zeitgebers. It varies between 0 (Gaussian Noise) and 1 for perfect IS. IV describes the fragmentation of a rhythm, i.e. the frequency and extent of transitions between rest and activity. It is near 0 for a perfect sine wave, about 2 for Gaussian noise and may be even higher when a definite ultradian period of about 2 hrs is present. RA is the relative amplitude of a rhythm. Note that to obtain reliable results, actigraphy data should cover a reasonable number of days.
Author: Christine Blume <christine.blume@sbg.ac.at>
Nayantara Santhi <n.santhi@surrey.ac.uk>
Manuel Schabus <manuel.schabus@sbg.ac.at>
Maintainer: Christine Blume <christine.blume@sbg.ac.at>
Diff between nparACT versions 0.5 dated 2016-06-06 and 0.6 dated 2016-06-30
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/nparACT_base.R | 2 +- R/nparACT_base_loop.R | 2 +- R/nparACT_flex.R | 2 +- R/nparACT_flex_loop.R | 2 +- man/nparACT-package.Rd | 4 ++-- 7 files changed, 16 insertions(+), 16 deletions(-)
Title: Differential Evolution Optimization in Pure R
Description: An implementation of a bespoke jDE variant of the
Differential Evolution stochastic algorithm for global optimization of
nonlinear programming problems.
Author: Eduardo L. T. Conceicao and Martin Maechler [ctb]
Maintainer: Eduardo L. T. Conceicao <mail@eduardoconceicao.org>
Diff between DEoptimR versions 1.0-4 dated 2015-10-23 and 1.0-5 dated 2016-06-30
DEoptimR-1.0-4/DEoptimR/NEWS |only DEoptimR-1.0-5/DEoptimR/DESCRIPTION | 17 +++++++++-------- DEoptimR-1.0-5/DEoptimR/MD5 | 8 ++++---- DEoptimR-1.0-5/DEoptimR/R/JDEoptim.R | 17 +++++++++-------- DEoptimR-1.0-5/DEoptimR/inst/NEWS.Rd |only DEoptimR-1.0-5/DEoptimR/man/JDEoptim.Rd | 12 ++++++------ 6 files changed, 28 insertions(+), 26 deletions(-)
Title: Compare Two ROC Curves that Intersect
Description: Comparison of two ROC curves through the methodology proposed by Ana C. Braga.
Author: Ana C. Braga with contributions from Hugo Frade, Sara Carvalho and Andre M. Santiago
Maintainer: Ana C. Braga <acb@dps.uminho.pt>
Diff between Comp2ROC versions 1.1.2 dated 2016-05-20 and 1.1.4 dated 2016-06-30
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- R/roc.curves.boot.R | 18 +++++++++--------- data/cas2015.rda |only man/Comp2ROC-package.Rd | 16 ++++++++++++++-- man/cas2015.Rd |only man/roc.curves.boot.Rd | 4 ++-- 7 files changed, 35 insertions(+), 21 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from
Liang et al (2008)
<http://dx.doi.org/10.1198/016214507000001337>
for linear models or mixtures of
g-priors in GLMs of Li and Clyde (2015)
<http://arxiv.org/abs/1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient
hash table. Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <http://dx.doi.org/10.1198/jcgs.2010.09049>.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.2.1 dated 2016-04-15 and 1.2.2 dated 2016-06-30
CHANGELOG | 15 ++++++++++++--- DESCRIPTION | 24 +++++++++++++----------- MD5 | 45 +++++++++++++++++++++++++-------------------- R/bas.R | 2 +- R/bas.gglm.R | 10 +++++++--- R/betapriors.R | 3 ++- R/coefficients.R | 4 ++-- R/diagnostics.R |only R/modelpriors.R | 5 ++++- R/plot.bma.R | 29 +++++++++++++++++------------ R/predict.bma.R | 23 ++++++++++++++++++----- data/bodyfat.rda |only man/bas.Rd | 4 ++-- man/bas.glm.Rd | 7 +++++-- man/bodyfat.Rd |only man/diagnostic.Rd |only man/fitted.bma.Rd | 18 ++++++++++++++---- man/plot.bma.Rd | 15 ++++++++++----- man/tr.power.prior.Rd |only src/ZS.approx.null.np.c | 6 ++++-- src/bayesglm.c | 2 -- src/betapriorfamily.c | 33 +++++++++++++++++++++++++++++++++ src/betapriorfamily.h | 3 +++ src/glm_lpy.c | 29 ++++++++++++++--------------- src/probabilities.c | 18 +++++++++++++++++- src/sampling.h | 1 + 26 files changed, 204 insertions(+), 92 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service (http://crunch.io/) provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal@crunch.io>
Diff between crunch versions 1.9.4 dated 2016-04-07 and 1.10.4 dated 2016-06-30
crunch-1.10.4/crunch/DESCRIPTION | 12 crunch-1.10.4/crunch/MD5 | 333 ++++---- crunch-1.10.4/crunch/NAMESPACE | 32 crunch-1.10.4/crunch/R/AllClasses.R | 62 + crunch-1.10.4/crunch/R/AllGenerics.R | 22 crunch-1.10.4/crunch/R/R-to-variable.R | 2 crunch-1.10.4/crunch/R/add-variable.R | 3 crunch-1.10.4/crunch/R/api.R | 33 crunch-1.10.4/crunch/R/as-data-frame.R | 8 crunch-1.10.4/crunch/R/auth.R | 28 crunch-1.10.4/crunch/R/batches.R | 2 crunch-1.10.4/crunch/R/categorical-array.R | 76 - crunch-1.10.4/crunch/R/combine-categories.R | 5 crunch-1.10.4/crunch/R/copy.R | 10 crunch-1.10.4/crunch/R/crunch.R | 2 crunch-1.10.4/crunch/R/dataset-catalog.R | 64 + crunch-1.10.4/crunch/R/dataset-extract.R | 16 crunch-1.10.4/crunch/R/dataset-order.R |only crunch-1.10.4/crunch/R/dataset.R | 104 ++ crunch-1.10.4/crunch/R/export-dataset.R |only crunch-1.10.4/crunch/R/expressions.R | 28 crunch-1.10.4/crunch/R/filters.R | 6 crunch-1.10.4/crunch/R/find.R | 62 - crunch-1.10.4/crunch/R/fork-and-merge.R | 26 crunch-1.10.4/crunch/R/hide-variables.R | 14 crunch-1.10.4/crunch/R/json.R | 11 crunch-1.10.4/crunch/R/members.R | 71 + crunch-1.10.4/crunch/R/misc.R | 68 + crunch-1.10.4/crunch/R/multiple-response.R | 16 crunch-1.10.4/crunch/R/new-dataset.R | 3 crunch-1.10.4/crunch/R/ordering.R | 34 crunch-1.10.4/crunch/R/permission-catalog.R |only crunch-1.10.4/crunch/R/progress.R | 24 crunch-1.10.4/crunch/R/projects.R | 42 - crunch-1.10.4/crunch/R/share.R | 45 - crunch-1.10.4/crunch/R/shoji-catalog.R | 42 - crunch-1.10.4/crunch/R/shoji-order-slots.R |only crunch-1.10.4/crunch/R/shoji-order.R |only crunch-1.10.4/crunch/R/shoji.R | 10 crunch-1.10.4/crunch/R/show.R | 35 crunch-1.10.4/crunch/R/subvariables.R | 9 crunch-1.10.4/crunch/R/teams.R | 5 crunch-1.10.4/crunch/R/tuple.R | 31 crunch-1.10.4/crunch/R/user.R | 16 crunch-1.10.4/crunch/R/variable-catalog.R | 42 - crunch-1.10.4/crunch/R/variable-definition.R | 2 crunch-1.10.4/crunch/R/variable-order.R | 410 ---------- crunch-1.10.4/crunch/R/variable-to-R.R | 52 - crunch-1.10.4/crunch/R/variable-type.R | 17 crunch-1.10.4/crunch/R/variable-update.R | 9 crunch-1.10.4/crunch/R/versions.R | 11 crunch-1.10.4/crunch/R/zcl.R | 22 crunch-1.10.4/crunch/build/vignette.rds |binary crunch-1.10.4/crunch/inst/doc/array-variables.R | 4 crunch-1.10.4/crunch/inst/doc/array-variables.Rmd | 4 crunch-1.10.4/crunch/inst/doc/filters.html | 4 crunch-1.10.4/crunch/inst/doc/variable-order.R | 6 crunch-1.10.4/crunch/inst/doc/variable-order.Rmd | 6 crunch-1.10.4/crunch/man/DatasetOrder.Rd |only crunch-1.10.4/crunch/man/ShojiOrder-extract.Rd |only crunch-1.10.4/crunch/man/ShojiOrder-length.Rd |only crunch-1.10.4/crunch/man/ShojiOrder-slots.Rd |only crunch-1.10.4/crunch/man/archive-and-publish.Rd |only crunch-1.10.4/crunch/man/catalog-extract.Rd | 27 crunch-1.10.4/crunch/man/dataset-owner.Rd |only crunch-1.10.4/crunch/man/dataset-update.Rd | 2 crunch-1.10.4/crunch/man/deleteVariables.Rd | 7 crunch-1.10.4/crunch/man/describe-catalog.Rd | 12 crunch-1.10.4/crunch/man/describe.Rd | 9 crunch-1.10.4/crunch/man/exportDataset.Rd |only crunch-1.10.4/crunch/man/forkDataset.Rd | 9 crunch-1.10.4/crunch/man/grouped.Rd | 16 crunch-1.10.4/crunch/man/hideVariables.Rd | 7 crunch-1.10.4/crunch/man/is.editor.Rd |only crunch-1.10.4/crunch/man/makeArray.Rd | 15 crunch-1.10.4/crunch/man/me.Rd |only crunch-1.10.4/crunch/man/ordering.Rd | 6 crunch-1.10.4/crunch/man/owners.Rd |only crunch-1.10.4/crunch/man/prepareBindInputs.Rd | 10 crunch-1.10.4/crunch/man/project-datasets.Rd | 4 crunch-1.10.4/crunch/man/project-icon.Rd |only crunch-1.10.4/crunch/man/saveVersion.Rd | 3 crunch-1.10.4/crunch/man/share.Rd | 3 crunch-1.10.4/crunch/man/shojiURL.Rd | 2 crunch-1.10.4/crunch/man/subvars-extract.Rd | 3 crunch-1.10.4/crunch/man/tojson-crunch.Rd | 8 crunch-1.10.4/crunch/man/tuple-methods.Rd | 43 - crunch-1.10.4/crunch/man/unshare.Rd |only crunch-1.10.4/crunch/man/urls.Rd | 10 crunch-1.10.4/crunch/man/variableMetadata.Rd |only crunch-1.10.4/crunch/tests/testthat/api/datasets.json | 12 crunch-1.10.4/crunch/tests/testthat/api/datasets/dataset1/variables/birthyr.json | 3 crunch-1.10.4/crunch/tests/testthat/api/datasets/dataset1/variables/mymrset.json | 3 crunch-1.10.4/crunch/tests/testthat/api/datasets/dataset2 |only crunch-1.10.4/crunch/tests/testthat/api/datasets/dataset2.json |only crunch-1.10.4/crunch/tests/testthat/api/datasets/dataset3/permissions.json |only crunch-1.10.4/crunch/tests/testthat/api/datasets/dataset3/variables.json | 28 crunch-1.10.4/crunch/tests/testthat/api/datasets/dataset3/variables/hierarchical.json | 3 crunch-1.10.4/crunch/tests/testthat/api/progress/1.json | 2 crunch-1.10.4/crunch/tests/testthat/api/progress/2.json | 2 crunch-1.10.4/crunch/tests/testthat/api/progress2 |only crunch-1.10.4/crunch/tests/testthat/api/projects.json | 5 crunch-1.10.4/crunch/tests/testthat/api/projects/project1/datasets |only crunch-1.10.4/crunch/tests/testthat/api/projects/project1/datasets.json | 3 crunch-1.10.4/crunch/tests/testthat/api/projects/project1/members.json | 5 crunch-1.10.4/crunch/tests/testthat/empty.png |only crunch-1.10.4/crunch/tests/testthat/github-versions.json | 99 -- crunch-1.10.4/crunch/tests/testthat/helper-contexts.R | 68 - crunch-1.10.4/crunch/tests/testthat/helper-expectations.R | 14 crunch-1.10.4/crunch/tests/testthat/helper.R | 13 crunch-1.10.4/crunch/tests/testthat/mapcty.R |only crunch-1.10.4/crunch/tests/testthat/test-active-filter.R | 11 crunch-1.10.4/crunch/tests/testthat/test-add-array.R | 130 +-- crunch-1.10.4/crunch/tests/testthat/test-add-subvariable.R | 28 crunch-1.10.4/crunch/tests/testthat/test-add-variable-definition.R | 14 crunch-1.10.4/crunch/tests/testthat/test-add-variable.R | 218 +++-- crunch-1.10.4/crunch/tests/testthat/test-api.R | 18 crunch-1.10.4/crunch/tests/testthat/test-append-arrays.R | 26 crunch-1.10.4/crunch/tests/testthat/test-append-conflicts.R | 12 crunch-1.10.4/crunch/tests/testthat/test-append-debug.R | 2 crunch-1.10.4/crunch/tests/testthat/test-appending.R | 50 - crunch-1.10.4/crunch/tests/testthat/test-as-data-frame.R | 20 crunch-1.10.4/crunch/tests/testthat/test-batches.R | 4 crunch-1.10.4/crunch/tests/testthat/test-categories.R | 20 crunch-1.10.4/crunch/tests/testthat/test-combine-categories.R | 2 crunch-1.10.4/crunch/tests/testthat/test-combine-responses.R | 2 crunch-1.10.4/crunch/tests/testthat/test-context-manager.R | 10 crunch-1.10.4/crunch/tests/testthat/test-copy-variable.R | 16 crunch-1.10.4/crunch/tests/testthat/test-cube-errors.R | 2 crunch-1.10.4/crunch/tests/testthat/test-cube-nway.R | 2 crunch-1.10.4/crunch/tests/testthat/test-cube-with-array.R | 12 crunch-1.10.4/crunch/tests/testthat/test-cube-with-expression.R | 2 crunch-1.10.4/crunch/tests/testthat/test-cubes.R | 22 crunch-1.10.4/crunch/tests/testthat/test-dataset-catalog.R | 65 + crunch-1.10.4/crunch/tests/testthat/test-dataset-entity.R | 118 ++ crunch-1.10.4/crunch/tests/testthat/test-datetime.R |only crunch-1.10.4/crunch/tests/testthat/test-deep-copy-variable.R | 36 crunch-1.10.4/crunch/tests/testthat/test-derive.R | 2 crunch-1.10.4/crunch/tests/testthat/test-drop-rows.R | 5 crunch-1.10.4/crunch/tests/testthat/test-edit-lock.R | 2 crunch-1.10.4/crunch/tests/testthat/test-exclusion-filter.R | 22 crunch-1.10.4/crunch/tests/testthat/test-export-dataset.R |only crunch-1.10.4/crunch/tests/testthat/test-expression.R | 93 +- crunch-1.10.4/crunch/tests/testthat/test-filters.R | 18 crunch-1.10.4/crunch/tests/testthat/test-fork.R | 49 - crunch-1.10.4/crunch/tests/testthat/test-get-datasets.R | 6 crunch-1.10.4/crunch/tests/testthat/test-github.R | 9 crunch-1.10.4/crunch/tests/testthat/test-helper.R | 6 crunch-1.10.4/crunch/tests/testthat/test-hide-variables.R | 68 + crunch-1.10.4/crunch/tests/testthat/test-join.R | 6 crunch-1.10.4/crunch/tests/testthat/test-make-array.R | 98 +- crunch-1.10.4/crunch/tests/testthat/test-misc.R | 29 crunch-1.10.4/crunch/tests/testthat/test-new-dataset.R | 2 crunch-1.10.4/crunch/tests/testthat/test-progress.R | 69 + crunch-1.10.4/crunch/tests/testthat/test-projects.R | 287 +++++-- crunch-1.10.4/crunch/tests/testthat/test-share.R | 39 crunch-1.10.4/crunch/tests/testthat/test-shoji.R | 13 crunch-1.10.4/crunch/tests/testthat/test-subvariables.R | 29 crunch-1.10.4/crunch/tests/testthat/test-teams.R | 64 - crunch-1.10.4/crunch/tests/testthat/test-update-array.R | 2 crunch-1.10.4/crunch/tests/testthat/test-update-errors.R | 6 crunch-1.10.4/crunch/tests/testthat/test-update-with-missing.R | 2 crunch-1.10.4/crunch/tests/testthat/test-update.R | 2 crunch-1.10.4/crunch/tests/testthat/test-user.R | 55 - crunch-1.10.4/crunch/tests/testthat/test-variable-catalog.R | 33 crunch-1.10.4/crunch/tests/testthat/test-variable-delete.R | 14 crunch-1.10.4/crunch/tests/testthat/test-variable-order.R | 256 +++--- crunch-1.10.4/crunch/tests/testthat/test-variable-summary.R | 2 crunch-1.10.4/crunch/tests/testthat/test-variable-type.R | 56 - crunch-1.10.4/crunch/tests/testthat/test-variables.R | 14 crunch-1.10.4/crunch/tests/testthat/test-versioning.R | 28 crunch-1.10.4/crunch/tests/testthat/test-weighting.R | 14 crunch-1.10.4/crunch/tests/testthat/utftesting.R | 2 crunch-1.10.4/crunch/vignettes/array-variables.Rmd | 4 crunch-1.10.4/crunch/vignettes/variable-order.Rmd | 6 crunch-1.10.4/crunch/vignettes/vignettes.RData |binary crunch-1.9.4/crunch/R/variable-order-slots.R |only crunch-1.9.4/crunch/man/VariableOrder-extract.Rd |only crunch-1.9.4/crunch/man/VariableOrder-length.Rd |only crunch-1.9.4/crunch/man/VariableOrder-slots.Rd |only crunch-1.9.4/crunch/man/findVariables.Rd |only crunch-1.9.4/crunch/tests/testthat/test-logging.R |only 182 files changed, 2638 insertions(+), 2073 deletions(-)
Title: Simultaneous Tolerance Bounds
Description: Provides an implementation of simultaneous tolerance bounds (STB), useful for checking whether a numeric vector fits to a hypothetical null-distribution or not.
Furthermore, there are functions for computing STB (bands, intervals) for random variates of linear mixed models fitted with package 'VCA'. All kinds of, possibly transformed
(studentized, standardized, Pearson-type transformed) random variates (residuals, random effects), can be assessed employing STB-methodology.
Author: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Maintainer: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Diff between STB versions 0.6.2 dated 2016-06-17 and 0.6.3 dated 2016-06-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/ChangeLog.txt | 6 ++++++ man/STB-Package.Rd | 4 ++-- src/stb.c | 7 +++++-- 5 files changed, 21 insertions(+), 12 deletions(-)
Title: The Skew-Normal and Skew-t Distributions
Description: Build and manipulate probability distributions of the skew-normal
family and some related ones, notably the skew-t family, and provide related
statistical methods for data fitting and diagnostics, in the univariate and
the multivariate case.
Author: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between sn versions 1.3-0 dated 2015-11-11 and 1.4-0 dated 2016-06-30
DESCRIPTION | 10 - MD5 | 37 ++-- NAMESPACE | 10 - NEWS | 10 + R/sn-funct.R | 364 +++++++++++++++++++++++++++++++++++--------- R/sn_S4.R | 4 data/ais.rda |binary data/barolo.rda |binary data/frontier.rda |binary data/wines.rda |binary inst/doc/how_to_sample.pdf |binary inst/doc/selm-intervals.pdf |only man/Qpenalty.Rd | 17 +- man/confint.selm.Rd |only man/dsn.Rd | 6 man/predict.selm.Rd |only man/profile.selm.Rd | 11 - man/selm-class.Rd | 5 man/selm.Rd | 47 +++-- man/sn-st.info.Rd | 6 man/zeta.Rd | 2 21 files changed, 397 insertions(+), 132 deletions(-)
Title: Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Description: The qgraph package can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.
Author: Sacha Epskamp, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between qgraph versions 1.3.3 dated 2016-04-29 and 1.3.4 dated 2016-06-30
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NEWS | 6 ++++++ R/PLOT.R | 14 +++++++++++++- R/centrality.R | 18 +++++++++++++++++- R/qgraph.R | 25 ++++++++++++++++++++++--- R/qgraphBoot.R |only man/CentAndClusfuns.Rd | 2 +- man/qgraph.Rd | 1 + 9 files changed, 71 insertions(+), 16 deletions(-)
Title: Probability-Scale Residuals and Residual Correlations
Description: Computes probability-scale residuals and residual correlations
for continuous, ordinal, binary, count, and time-to-event data.
Author: Charles Dupont, Jeffrey Horner, Chun Li, Qi Liu, Bryan Shepherd
Maintainer: Bryan Shepherd <bryan.shepherd@VANDERBILT.EDU>
Diff between PResiduals versions 0.2-3 dated 2016-05-12 and 0.2-4 dated 2016-06-30
PResiduals-0.2-3/PResiduals/R/cocobot_orm.R |only PResiduals-0.2-4/PResiduals/DESCRIPTION | 20 PResiduals-0.2-4/PResiduals/MD5 | 66 - PResiduals-0.2-4/PResiduals/NAMESPACE | 18 PResiduals-0.2-4/PResiduals/R/cobot.R | 14 PResiduals-0.2-4/PResiduals/R/cocobot.R | 15 PResiduals-0.2-4/PResiduals/R/conditional.Spearman.R |only PResiduals-0.2-4/PResiduals/R/corTS.R | 108 + PResiduals-0.2-4/PResiduals/R/corr.R |only PResiduals-0.2-4/PResiduals/R/countbot.R | 588 ++++------ PResiduals-0.2-4/PResiduals/R/getCI.R | 2 PResiduals-0.2-4/PResiduals/R/kernel.function.R |only PResiduals-0.2-4/PResiduals/R/megabot.R | 23 PResiduals-0.2-4/PResiduals/R/newPolr.R | 20 PResiduals-0.2-4/PResiduals/R/orm.scores.R | 9 PResiduals-0.2-4/PResiduals/R/partial.Spearman.R |only PResiduals-0.2-4/PResiduals/R/pgumbel.R | 24 PResiduals-0.2-4/PResiduals/R/plot.conditional.Spearman.R |only PResiduals-0.2-4/PResiduals/R/presid.R | 109 + PResiduals-0.2-4/PResiduals/R/print.cobot.R | 11 PResiduals-0.2-4/PResiduals/R/print.cocobot.R | 2 PResiduals-0.2-4/PResiduals/R/print.conditional.Spearman.R |only PResiduals-0.2-4/PResiduals/R/print.partial.Spearman.R |only PResiduals-0.2-4/PResiduals/data/PResidData.rda |binary PResiduals-0.2-4/PResiduals/man/GKGamma.Rd | 2 PResiduals-0.2-4/PResiduals/man/PResiduals-package.Rd | 2 PResiduals-0.2-4/PResiduals/man/cobot.Rd | 8 PResiduals-0.2-4/PResiduals/man/cocobot.Rd | 24 PResiduals-0.2-4/PResiduals/man/conditional.partial.Spearman.Rd |only PResiduals-0.2-4/PResiduals/man/corr.Rd |only PResiduals-0.2-4/PResiduals/man/countbot.Rd | 59 - PResiduals-0.2-4/PResiduals/man/diagn.Rd | 4 PResiduals-0.2-4/PResiduals/man/kernel.function.Rd |only PResiduals-0.2-4/PResiduals/man/megabot.Rd | 21 PResiduals-0.2-4/PResiduals/man/newpolr.Rd |only PResiduals-0.2-4/PResiduals/man/partial.Spearman.Rd |only PResiduals-0.2-4/PResiduals/man/plot.conditional.Spearman.Rd |only PResiduals-0.2-4/PResiduals/man/presid.Rd | 2 PResiduals-0.2-4/PResiduals/man/print.cobot.Rd | 2 PResiduals-0.2-4/PResiduals/man/print.cocobot.Rd | 2 PResiduals-0.2-4/PResiduals/man/print.conditional.Spearman.Rd |only PResiduals-0.2-4/PResiduals/man/print.partial.Spearman.Rd |only 42 files changed, 647 insertions(+), 508 deletions(-)
Title: Parse Eye-Tracking Data into Fixations
Description: Eye-tracking data must be transformed into fixations and saccades before it can be analyzed. This package provides a non-parametric speed-based approach to do this on a trial basis. The method is especially useful when there are large differences in data quality, as the thresholds are adjusted accordingly. The same pre-processing procedure can be applied to all participants, while accounting for individual differences in data quality.
Author: Daan van Renswoude & Ingmar Visser
Maintainer: Daan van Renswoude <D.R.vanRenswoude@uva.nl>
Diff between gazepath versions 1.0 dated 2015-04-01 and 1.1 dated 2016-06-30
DESCRIPTION | 20 ++--- MD5 | 38 ++++++---- NAMESPACE | 15 +++- R/Eyelink.R | 2 R/GUI.R |only R/GazePath.R | 179 +++++++++++++++++++++++++++++++++++------------- R/Interpolate.R |only R/Mould_dur.R | 5 + R/Mould_vel.R | 33 +++++--- R/comhull.R |only R/head.gazepath.R |only R/plot.gazepath.R | 17 +++- R/plotMould.R | 6 + R/print.gazepath.R | 6 - R/simplify.R | 8 +- R/summary.gazepath.R | 37 ++++++--- R/tail.gazepath.R |only data/eye_data.RData |binary data/screen.RData |binary inst |only man/GUI.Rd |only man/GazePath.Rd | 76 ++++++++++++-------- man/gazepath-package.Rd | 8 +- 23 files changed, 305 insertions(+), 145 deletions(-)
Title: Selecting Attributes
Description: Functions for selecting attributes from a given dataset. Attribute
subset selection is the process of identifying and removing as much of the
irrelevant and redundant information as possible.
Author: Piotr Romanski, Lars Kotthoff
Maintainer: Lars Kotthoff <larsko@cs.ubc.ca>
Diff between FSelector versions 0.20 dated 2014-10-25 and 0.21 dated 2016-06-30
DESCRIPTION | 19 ++++++++--------- MD5 | 11 +++++----- NAMESPACE | 2 + R/misc.R | 4 +-- R/selector.info.gain.R | 52 ++++++++++++++++++++++++------------------------ README.md |only man/information.gain.Rd | 16 +++++++++----- 7 files changed, 55 insertions(+), 49 deletions(-)
Title: Item Focused Trees for the Identification of Items in
Differential Item Functioning
Description: Item focused recursive partitioning for simultaneous selection of
items and variables that induce Differential Item Functioning (DIF) based on the
Rasch Model or the Logistic Regression Approach for DIF detection.
Author: Moritz Berger
Maintainer: Moritz Berger <moritz.berger@stat.uni-muenchen.de>
Diff between DIFtree versions 2.0.2 dated 2016-04-22 and 2.0.3 dated 2016-06-30
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/DIFtree.default.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Gaussian Mixture Models (GMM)
Description: Multimodal distributions can be modelled as a mixture of components. The model is derived using the Pareto Density Estimation (PDE) for an estimation of the pdf. PDE has been designed in particular to identify groups/classes in a dataset. Precise limits for the classes can be calculated using the theorem of Bayes. Verification of the model is possible by QQ plot, Chi-squared test and Kolmogorov-Smirnov test.
Author: Michael Thrun, Onno Hansen-Goos, Rabea Griese, Catharina Lippmann, Jorn Lotsch, Alfred Ultsch
Maintainer: Michael Thrun <mthrun@mathematik.uni-marburg.de>
Diff between AdaptGauss versions 1.2.3 dated 2016-06-16 and 1.2.4 dated 2016-06-30
DESCRIPTION | 8 +++--- MD5 | 14 +++++------ R/KStestMixtures.R | 48 ++++++++++++++++++++--------------------- R/ParetoDensityEstimation.R | 25 +++++++++++---------- R/ParetoRadius.R | 31 +++++++++++++++++++------- man/Chi2testMixtures.Rd | 41 ++++++++++++++++++++++++----------- man/ParetoDensityEstimation.Rd | 5 ---- man/ParetoRadius.Rd | 1 8 files changed, 103 insertions(+), 70 deletions(-)
Title: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
Implementation
Description: An R wrapper around the fast T-distributed Stochastic
Neighbor Embedding implementation by Van der Maaten.
Author: Jesse Krijthe [aut, cre],
Laurens van der Maaten [cph] (Author of original C++ code)
Maintainer: Jesse Krijthe <jkrijthe@gmail.com>
Diff between Rtsne versions 0.10 dated 2015-05-26 and 0.11 dated 2016-06-30
DESCRIPTION | 19 +++++++++----- MD5 | 23 +++++++++--------- NAMESPACE | 4 ++- R/RcppExports.R | 4 +-- R/Rtsne.R | 45 ++++++++++++++++++++++++++--------- README.md | 53 +++++++++++++++++++++++++++++------------ inst |only man/Rtsne.Rd | 39 ++++++++++++++++++++++-------- src/RcppExports.cpp | 10 ++++--- src/Rtsne.cpp | 31 +++++++++++------------- src/tsne.cpp | 56 +++++++++++++++++++++++--------------------- src/tsne.h | 2 - tests/testthat/test_Rtsne.R | 44 ++++++++++++++++++++++++++++------ 13 files changed, 215 insertions(+), 115 deletions(-)
Title: Generation of Regular Factorial Designs
Description: Automatic generation of regular factorial designs, including fractional designs, orthogonal block designs, row-column designs and split-plots.
Author: Hervé Monod, Annie Bouvier, André Kobilinsky
Maintainer: Annie Bouvier <Annie.Bouvier@jouy.inra.fr>
Diff between planor versions 0.2-4 dated 2015-06-22 and 1.0-1 dated 2016-06-30
planor-0.2-4/planor/tests/HM2.R |only planor-0.2-4/planor/tests/HM2.Rout |only planor-1.0-1/planor/DESCRIPTION | 13 planor-1.0-1/planor/MD5 | 62 - planor-1.0-1/planor/NAMESPACE | 5 planor-1.0-1/planor/NEWS | 60 + planor-1.0-1/planor/R/basep.R | 86 +- planor-1.0-1/planor/R/designfactors.R | 2 planor-1.0-1/planor/R/designkey.R | 28 planor-1.0-1/planor/R/keymatrix.R | 73 +- planor-1.0-1/planor/R/keyring.R | 2 planor-1.0-1/planor/R/listofdesignkeys.R | 11 planor-1.0-1/planor/R/listofkeyrings.R | 12 planor-1.0-1/planor/R/planor.R | 296 +++++---- planor-1.0-1/planor/R/planordesign.R | 6 planor-1.0-1/planor/inst/doc/PlanorInRmanual.pdf | 696 +++++++++++----------- planor-1.0-1/planor/inst/doc/index.html | 1 planor-1.0-1/planor/inst/doc/planor-manual.pdf |binary planor-1.0-1/planor/inst/doc/planorVignette.pdf |binary planor-1.0-1/planor/man/planor.designkey.Rd | 9 planor-1.0-1/planor/src/planor.cpp | 59 + planor-1.0-1/planor/tests/Kobi0.Rout.save | 9 planor-1.0-1/planor/tests/Kobi1.Rout.save | 9 planor-1.0-1/planor/tests/Kobi2.Rout.save | 9 planor-1.0-1/planor/tests/Kobi3.Rout.save | 9 planor-1.0-1/planor/tests/KobiRecursive.Rout.save | 13 planor-1.0-1/planor/tests/NewKobi1.Rout.save | 24 planor-1.0-1/planor/tests/Touzeau2.Rout.save | 9 planor-1.0-1/planor/tests/exsimple.Rout.save | 9 planor-1.0-1/planor/tests/generate.Rout.save | 17 planor-1.0-1/planor/tests/haies.Rout.save | 9 planor-1.0-1/planor/tests/mixkey.Rout.save | 50 - planor-1.0-1/planor/tests/noineligible.Rout.save | 9 33 files changed, 889 insertions(+), 708 deletions(-)
Title: Whole Genome Average Interval Mapping for QTL Detection using
Mixed Models
Description: Integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.
Author: Julian Taylor <julian.taylor@adelaide.edu.au>, Simon Diffey <simon.diffey@dpi.nsw.gov.au>, Ari Verbyla <ari.verbyla@csiro.au> and Brian Cullis <bcullis@uow.edu.au>.
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>
Diff between wgaim versions 1.4-10 dated 2015-06-26 and 1.4-11 dated 2016-06-30
wgaim-1.4-10/wgaim/R/wgaim9.R |only wgaim-1.4-11/wgaim/DESCRIPTION | 8 ++++---- wgaim-1.4-11/wgaim/MD5 | 16 ++++++++-------- wgaim-1.4-11/wgaim/NAMESPACE | 4 ++++ wgaim-1.4-11/wgaim/R/wgaim11.R |only wgaim-1.4-11/wgaim/inst/NEWS.Rd | 5 +++++ wgaim-1.4-11/wgaim/inst/doc/wgaim.pdf |binary wgaim-1.4-11/wgaim/man/cross2int.Rd | 6 +++--- wgaim-1.4-11/wgaim/man/link.map.default.Rd | 8 ++++++-- wgaim-1.4-11/wgaim/man/link.map.wgaim.Rd | 7 +++++-- 10 files changed, 35 insertions(+), 19 deletions(-)
Title: Metaheuristic Optimization Framework for Preprocessing
Combinations
Description: Automation of preprocessing often requires computationally costly
preprocessing combinations. This package helps to find near-best combinations
faster. Metaheuristics supported are taboo search, simulated annealing, reheating
and late acceptance. Start conditions include random and grid starts. End conditions
include all iteration rounds completed, objective threshold reached and convergence.
Metaheuristics, start and end conditions can be hybridized and hyperparameters optimized.
Parallel computations are supported. The package is intended to be used with package
'preprocomb' and takes its 'GridClass' object as input.
Author: Markus Vattulainen
Maintainer: Markus Vattulainen <markus.vattulainen@gmail.com>
Diff between metaheur versions 0.1.0 dated 2016-01-03 and 0.2.0 dated 2016-06-30
metaheur-0.1.0/metaheur/R/03MetaheurCompare.R |only metaheur-0.1.0/metaheur/man/metaheurcompare.Rd |only metaheur-0.1.0/metaheur/man/plotdensity.Rd |only metaheur-0.2.0/metaheur/DESCRIPTION | 27 +- metaheur-0.2.0/metaheur/MD5 | 44 ++-- metaheur-0.2.0/metaheur/NAMESPACE | 13 - metaheur-0.2.0/metaheur/R/01Utils.R | 50 ++++ metaheur-0.2.0/metaheur/R/02Metaheur.R | 187 +++++++++++++----- metaheur-0.2.0/metaheur/R/03MetaheurHyperparameters.R |only metaheur-0.2.0/metaheur/R/04ModificationComponent.R | 29 ++ metaheur-0.2.0/metaheur/R/05AssessmentComponent.R | 16 + metaheur-0.2.0/metaheur/R/06ExtractComponent.R |only metaheur-0.2.0/metaheur/R/sysdata.rda |only metaheur-0.2.0/metaheur/build |only metaheur-0.2.0/metaheur/data/examplegrid.rda |binary metaheur-0.2.0/metaheur/data/examplehyperparam.rda |only metaheur-0.2.0/metaheur/data/examplesearch.rda |only metaheur-0.2.0/metaheur/inst |only metaheur-0.2.0/metaheur/man/examplegrid.Rd | 13 - metaheur-0.2.0/metaheur/man/examplehyperparam.Rd |only metaheur-0.2.0/metaheur/man/examplesearch.Rd |only metaheur-0.2.0/metaheur/man/getbestheur.Rd | 10 metaheur-0.2.0/metaheur/man/getlogs.Rd |only metaheur-0.2.0/metaheur/man/getwalltime.Rd |only metaheur-0.2.0/metaheur/man/metaheur-class.Rd |only metaheur-0.2.0/metaheur/man/metaheur.Rd | 33 +-- metaheur-0.2.0/metaheur/man/metaheurhyper-class.Rd |only metaheur-0.2.0/metaheur/man/metaheurhyper.Rd |only metaheur-0.2.0/metaheur/man/plotsearchpath.Rd | 17 - metaheur-0.2.0/metaheur/tests/testthat/test.R | 10 metaheur-0.2.0/metaheur/vignettes |only 31 files changed, 321 insertions(+), 128 deletions(-)
Title: Meta-Analysis for Diagnostic Test Studies
Description: Bayesian inference analysis for bivariate meta-analysis of diagnostic test studies using integrated nested Laplace approximation with INLA. A purpose built graphic user interface is available. The installation of R package INLA is compulsory for successful usage. The INLA package can be obtained from <http://www.r-inla.org>. We recommend the testing version, which can be downloaded by running: install.packages("INLA", repos="http://www.math.ntnu.no/inla/R/testing").
Author: Jingyi Guo <jingyi.guo@math.ntnu.no> and Andrea Riebler <andrea.riebler@math.ntnu.no>
Maintainer: Jingyi Guo <jingyi.guo@math.ntnu.no>
Diff between meta4diag versions 2.0.2 dated 2016-06-23 and 2.0.3 dated 2016-06-30
DESCRIPTION | 14 MD5 | 38 - NAMESPACE | 6 R/AUC.R |only R/SROC.R | 326 +++++++++++--- R/crosshair.R | 64 ++ R/fitted.R | 22 - R/forest.R | 50 +- R/makeData.R | 5 R/makeObject.R | 679 ++++++++++++++++--------------- R/meta4diag.R | 8 R/runModel.R | 30 - R/summary.R | 2 inst/meta4diagGUI/server.R | 849 ++++++++++++++++++++++++++++----------- inst/meta4diagGUI/www/index.html | 310 +++++++++----- man/AUC.Rd |only man/SROC.Rd | 51 +- man/crosshair.Rd | 15 man/makeObject.Rd | 45 -- man/makePriors.Rd | 8 man/meta4diag.Rd | 47 +- 21 files changed, 1662 insertions(+), 907 deletions(-)
Title: Distance-Based Measures of Spatial Structures
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, including classical ones (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M). Relies on spatstat for some core calculation.
Author: Eric Marcon, Gabriel Lang, Stephane Traissac, Florence Puech
Maintainer: Eric Marcon <Eric.Marcon@ecofog.gf>
Diff between dbmss versions 2.2-4 dated 2015-12-10 and 2.2-5 dated 2016-06-30
DESCRIPTION | 10 +- MD5 | 71 +++++++++++-------- NAMESPACE | 5 + NEWS | 47 ++++++++---- R/CheckdbmssArguments.R | 13 ++- R/Dtable.R |only R/KdEnvelope.R | 3 R/Kdhat.R | 156 +++++++++++++++++++++++++++-------------- R/Mhat.R | 37 ++++++--- R/RcppExports.R | 8 ++ R/as.Dtable.R |only R/as.Dtable.data.frame.R |only R/as.Dtable.ppp.R |only R/as.wmppp.R | 3 R/as.wmppp.data.frame.R | 9 +- R/as.wmppp.ppp.R | 80 ++++++++++----------- R/envelope.Dtable.R |only R/m_hat.R | 63 +++++++++------- R/rPopulationIndependenceM.R | 34 +++++++-- R/rRandomLabelingM.R | 22 ++++- R/rRandomLocation.R | 44 +++++++++-- R/wmppp.R | 5 - build/vignette.rds |binary inst/doc/dbmss.pdf |binary man/Dtable.Rd |only man/KdEnvelope.Rd | 12 ++- man/Kdhat.Rd | 20 ++++- man/MEnvelope.Rd | 2 man/Mhat.Rd | 2 man/Rcpp.Rd | 7 + man/as.Dtable.Rd |only man/envelope.Dtable.Rd |only man/m_Envelope.Rd | 4 - man/m_hat.Rd | 17 +++- man/rRandomLabelingM.Rd | 2 man/wmppp.Rd | 2 src/CountNbd.cpp | 160 +++++++++++++++++++++++++++++++++++++++++-- src/RcppExports.cpp | 30 ++++++++ tests |only vignettes/dbmss.bib | 15 +--- 40 files changed, 638 insertions(+), 245 deletions(-)
Title: A Fast Segmentation Algorithm
Description: Performs a fast exact segmentation on data and allows for use of various cost functions.
Author: Alice Cleynen, Guillem Rigaill, Michel Koskas
Maintainer: Alice Cleynen <alice.cleynen@umontpellier.fr>
Diff between Segmentor3IsBack versions 1.8 dated 2013-10-15 and 2.0 dated 2016-06-30
DESCRIPTION | 16 +-- MD5 | 52 +++++------ NAMESPACE | 8 + R/Segmentor3IsBack.R | 70 ++++++++++++--- R/zzz.r | 2 man/BestSegmentation.Rd | 4 man/Segmentor.Rd | 15 +-- man/Segmentor3IsBack-package.Rd | 8 - man/SelectModel.Rd | 6 - man/getBreaks.Rd | 4 man/getCompression.Rd | 4 man/getCost.Rd | 4 man/getData.Rd | 4 man/getKmax.Rd | 5 - man/getLikelihood.Rd | 5 - man/getMean.Rd | 4 man/getModel.Rd | 4 man/getOverdispersion.Rd | 4 man/getParameters.Rd | 4 man/getPos.Rd | 4 src/CallSegmentor.cpp | 168 +++++++++++++++++++++++++++++++++---- src/CallSegmentor.h | 18 ++- src/Exp.cpp |only src/Exp.h |only src/Function.h | 2 src/GeneralFunctionsDeclarations.h | 10 -- src/PrunedSeg.cc | 44 ++++++--- src/Segmentor.h | 2 28 files changed, 335 insertions(+), 136 deletions(-)
More information about Segmentor3IsBack at CRAN
Permanent link
Title: Evolutionary Parameter Estimation for 'Repast Simphony' Models
Description: The EvoPER, Evolutionary Parameter Estimation for 'Repast Simphony'
Agent-Based framework, provides optimization driven parameter estimation methods
based on evolutionary computation techniques which could be more efficient and
require, in some cases, fewer model evaluations than other alternatives
relaying on experimental design.
Author: Antonio Prestes Garcia [aut, cre],
Alfonso Rodriguez-Paton [aut, ths]
Maintainer: Antonio Prestes Garcia <antonio.pgarcia@alumnos.upm.es>
Diff between evoper versions 0.1.0 dated 2016-06-16 and 0.2.0 dated 2016-06-30
evoper-0.1.0/evoper/man/pso.lowerBound.Rd |only evoper-0.1.0/evoper/man/rangesearch.pso.Rd |only evoper-0.1.0/evoper/man/saa.neighborhood.t1.Rd |only evoper-0.2.0/evoper/DESCRIPTION | 8 evoper-0.2.0/evoper/MD5 | 34 - evoper-0.2.0/evoper/NAMESPACE | 26 evoper-0.2.0/evoper/NEWS | 39 + evoper-0.2.0/evoper/R/evoper.R | 738 ++++++++++++++++++++----- evoper-0.2.0/evoper/man/Options-class.Rd |only evoper-0.2.0/evoper/man/OptionsPSO-class.Rd |only evoper-0.2.0/evoper/man/OptionsSAA-class.Rd |only evoper-0.2.0/evoper/man/OptionsSDA-class.Rd |only evoper-0.2.0/evoper/man/abm.pso.Rd | 25 evoper-0.2.0/evoper/man/abm.saa.Rd | 15 evoper-0.2.0/evoper/man/abm.sda.Rd |only evoper-0.2.0/evoper/man/extremize.Rd |only evoper-0.2.0/evoper/man/f0.rosenbrock2.Rd |only evoper-0.2.0/evoper/man/f0.test.Rd |only evoper-0.2.0/evoper/man/f1.rosenbrock2.Rd |only evoper-0.2.0/evoper/man/f1.test.Rd |only evoper-0.2.0/evoper/man/lowerBound.Rd |only evoper-0.2.0/evoper/man/saa.bolt.Rd |only evoper-0.2.0/evoper/man/saa.neighborhood.Rd |only evoper-0.2.0/evoper/man/saa.neighborhood1.Rd |only evoper-0.2.0/evoper/man/saa.neighborhoodH.Rd |only evoper-0.2.0/evoper/man/saa.neighborhoodN.Rd |only evoper-0.2.0/evoper/man/saa.tbyk.Rd |only evoper-0.2.0/evoper/man/saa.tcte.Rd |only evoper-0.2.0/evoper/man/saa.texp.Rd |only 29 files changed, 684 insertions(+), 201 deletions(-)