Fri, 08 Jul 2016

Package rmarkdown updated to version 1.0 with previous version 0.9.6 dated 2016-04-30

Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut, cre], Joe Cheng [aut], Yihui Xie [aut], Jonathan McPherson [aut], Winston Chang [aut], Jeff Allen [aut], Hadley Wickham [aut], Aron Atkins [aut], Rob Hyndman [aut], RStudio, Inc. [cph], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/rmd/h/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), Eli Grey [ctb, cph] (FileSaver library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons)
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between rmarkdown versions 0.9.6 dated 2016-04-30 and 1.0 dated 2016-07-08

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More information about rmarkdown at CRAN
Permanent link

Package kyotil updated to version 2016.7-7 with previous version 2015.11-13 dated 2015-11-14

Title: Utility Functions by Youyi, Krisz and Others
Description: A miscellaneous set of functions for printing, plotting, kernels, etc. Additional contributors are acknowledged on individual function help pages.
Author: Youyi Fong <yfong@fhcrc.org>, Krisztian Sebestyen <ksebestyen@gmail.com>
Maintainer: Youyi Fong <yfong@fhcrc.org>

Diff between kyotil versions 2015.11-13 dated 2015-11-14 and 2016.7-7 dated 2016-07-08

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Package HydeNet updated to version 0.10.4 with previous version 0.10.3 dated 2016-02-05

Title: Hybrid Bayesian Networks Using R and JAGS
Description: Facilities for easy implementation of hybrid Bayesian networks using R. Bayesian networks are directed acyclic graphs representing joint probability distributions, where each node represents a random variable and each edge represents conditionality. The full joint distribution is therefore factorized as a product of conditional densities, where each node is assumed to be independent of its non-descendents given information on its parent nodes. Since exact, closed-form algorithms are computationally burdensome for inference within hybrid networks that contain a combination of continuous and discrete nodes, particle-based approximation techniques like Markov Chain Monte Carlo are popular. We provide a user-friendly interface to constructing these networks and running inference using the 'rjags' package. Econometric analyses (maximum expected utility under competing policies, value of information) involving decision and utility nodes are also supported.
Author: Jarrod E. Dalton <daltonj@ccf.org> and Benjamin Nutter <benjamin.nutter@gmail.com>
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>

Diff between HydeNet versions 0.10.3 dated 2016-02-05 and 0.10.4 dated 2016-07-08

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 NAMESPACE                                  |    4 
 NEWS                                       |    9 
 R/HydeNetwork.R                            |  369 +++++++++++++++-----
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 R/HydeUtilities.R                          |  299 ++++++++++------
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 R/rToJags.R                                |  114 ++++--
 R/rewriteHydeFormula.R                     |  103 ++++-
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 R/setNode.R                                |  271 +++++++++------
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 R/vectorProbs.R                            |   15 
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 README.md                                  |    2 
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 man/print.cpt.Rd                           |    2 
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 94 files changed, 3519 insertions(+), 2044 deletions(-)

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New package esc with initial version 0.1.0
Package: esc
Type: Package
Encoding: UTF-8
Title: Effect Size Computation for Meta Analysis
Version: 0.1.0
Date: 2016-06-07
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Description: Implementation of the web-based 'Practical Meta-Analysis Effect Size Calculator' from David B. Wilson in R. Based on the input, the effect size can be returned as standardized mean difference, Hedges' g, correlation coefficient r or Fisher's transformation z, odds ratio or log odds effect size.
License: GPL-3
Depends: R (>= 3.2), stats
URL: https://github.com/sjPlot/esc
BugReports: https://github.com/sjPlot/esc/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-08 16:02:41 UTC; Standardbenutzer
Repository: CRAN
Date/Publication: 2016-07-08 18:47:25

More information about esc at CRAN
Permanent link

Package aqp updated to version 1.9.10 with previous version 1.9.3 dated 2015-12-19

Title: Algorithms for Quantitative Pedology
Description: A collection of algorithms related to modeling of soil resources, soil classification, soil profile aggregation, and visualization.
Author: Dylan Beaudette [aut, cre], Pierre Roudier [aut, ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@ca.usda.gov>

Diff between aqp versions 1.9.3 dated 2015-12-19 and 1.9.10 dated 2016-07-08

 aqp-1.9.10/aqp/.Rinstignore                       |    2 
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 aqp-1.9.10/aqp/R/profile_compare.R                |   70 +---
 aqp-1.9.10/aqp/R/profile_plot.R                   |   48 ++
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 aqp-1.9.10/aqp/man/SoilProfileCollection-class.Rd |    7 
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Package spatstat updated to version 1.46-1 with previous version 1.45-2 dated 2016-05-09

Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images. Contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported. Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>, Rolf Turner <r.turner@auckland.ac.nz> and Ege Rubak <rubak@math.aau.dk>, with substantial contributions of code by Kasper Klitgaard Berthelsen; Ottmar Cronie; Ute Hahn; Abdollah Jalilian; Marie-Colette van Lieshout; Tuomas Rajala; Dominic Schuhmacher; and Rasmus Waagepetersen. Additional contributions by M. Adepeju; C. Anderson; Q.W. Ang; S. Azaele; M. Baddeley; C. Beale; M. Bell; R. Bernhardt; T. Bendtsen; A. Bevan; B. Biggerstaff; A. Bilgrau; L. Bischof; C. Biscio; R. Bivand; J.M. Blanco Moreno; F. Bonneu; J. Burgos; S. Byers; Y.M. Chang; J.B. Chen; I. Chernayavsky; Y.C. Chin; B. Christensen; J.-F. Coeurjolly; R. Corria Ainslie; M. de la Cruz; P. Dalgaard; M. D'Antuono; S. Das; P.J. Diggle; P. Donnelly; I. Dryden; S. Eglen; A. El-Gabbas; B. Fandohan; O. Flores; E.D. Ford; P. Forbes; S. Frank; J. Franklin; N. Funwi-Gabga; O. Garcia; A. Gault; J. Geldmann; M. Genton; S. Ghalandarayeshi; J. Gilbey; J. Goldstick; P. Grabarnik; C. Graf; U. Hahn; A. Hardegen; M.B. Hansen; M. Hazelton; J. Heikkinen; M. Hering; M. Herrmann; P. Hewson; K. Hingee; K. Hornik; P. Hunziker; J. Hywood; R. Ihaka; A. Jammalamadaka; R. John-Chandran; D. Johnson; M. Khanmohammadi; R. Klaver; P. Kovesi; M. Kuhn; J. Laake; F. Lavancier; T. Lawrence; R.A. Lamb; J. Lee; G.P. Leser; H.T. Li; G. Limitsios; A. Lister; B. Madin; M. Maechler; J. Marcus; K. Marchikanti; R. Mark; J. Mateu; P. McCullagh; U. Mehlig; S. Meyer; X.C. Mi; L. De Middeleer; R.K. Milne; E. Miranda; J. Moller; V. Morera Pujol; E. Mudrak; G.M. Nair; N. Nava; L.S. Nielsen; F. Nunes; J.R. Nyengaard; J. Oehlschlaegel; T. Onkelinx; S. O'Riordan; E. Parilov; J. Picka; N. Picard; M. Porter; S. Protsiv; A. Raftery; S. Rakshit; B. Ramage; P. Ramon; X. Raynaud, M. Reiter; I. Renner; T.O. Richardson; B.D. Ripley; E. Rosenbaum; B. Rowlingson; J. Rudokas; J. Rudge; C. Ryan; F. Safavimanesh; A. Sarkka; C. Schank; K. Schladitz; S. Schutte; B.T. Scott; O. Semboli; F. Semecurbe; V. Shcherbakov; G.C. Shen; P. Shi; H.-J. Ship; I.-M. Sintorn; Y. Song; M. Spiess; M. Stevenson; K. Stucki; M. Sumner; P. Surovy; B. Taylor; T. Thorarinsdottir; B. Turlach; T. Tvedebrink; K. Ummer; M. Uppala; A. van Burgel; T. Verbeke; M. Vihtakari; A. Villers; F. Vinatier; S. Voss; S. Wagner; H. Wang; H. Wendrock; J. Wild; C. Witthoft; S. Wong; M. Woringer; M.E. Zamboni and A. Zeileis.
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

Diff between spatstat versions 1.45-2 dated 2016-05-09 and 1.46-1 dated 2016-07-08

 DESCRIPTION                      |   13 
 MD5                              | 2070 +++++++++++++++++++--------------------
 NAMESPACE                        |   24 
 NEWS                             |  152 ++
 R/FGmultiInhom.R                 |    9 
 R/Kest.R                         |    4 
 R/Kinhom.R                       |    2 
 R/Kmulti.inhom.R                 |  254 +++-
 R/addvar.R                       |    3 
 R/density.ppp.R                  |   81 +
 R/detPPF-class.R                 |    6 
 R/diagnoseppm.R                  |   34 
 R/fitted.ppm.R                   |    2 
 R/funxy.R                        |   23 
 R/geyer.R                        |    4 
 R/kernels.R                      |   18 
 R/laslett.R                      |    3 
 R/layered.R                      |    5 
 R/leverage.R                     |  131 +-
 R/linalg.R                       |   16 
 R/lurking.R                      |    7 
 R/measures.R                     |  144 ++
 R/mppm.R                         |    7 
 R/options.R                      |   43 
 R/parres.R                       |    5 
 R/pcf.R                          |   60 -
 R/plot.anylist.R                 |   65 -
 R/plot.ppm.R                     |    4 
 R/plot.ppp.R                     |   30 
 R/qqplotppm.R                    |    5 
 R/residppm.R                     |    4 
 R/smooth.ppp.R                   |   14 
 R/solist.R                       |    9 
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 man/AreaInter.Rd                 |    4 
 man/BadGey.Rd                    |    4 
 man/CDF.Rd                       |    4 
 man/Concom.Rd                    |    4 
 man/DiggleGatesStibbard.Rd       |    4 
 man/DiggleGratton.Rd             |    4 
 man/Emark.Rd                     |    4 
 man/Extract.anylist.Rd           |    4 
 man/Extract.fasp.Rd              |    4 
 man/Extract.fv.Rd                |    4 
 man/Extract.hyperframe.Rd        |    4 
 man/Extract.im.Rd                |    4 
 man/Extract.influence.ppm.Rd     |    4 
 man/Extract.layered.Rd           |    4 
 man/Extract.leverage.ppm.Rd      |    4 
 man/Extract.linnet.Rd            |    6 
 man/Extract.listof.Rd            |    4 
 man/Extract.lpp.Rd               |    4 
 man/Extract.msr.Rd               |    4 
 man/Extract.owin.Rd              |    4 
 man/Extract.ppp.Rd               |    4 
 man/Extract.ppx.Rd               |    4 
 man/Extract.psp.Rd               |    4 
 man/Extract.quad.Rd              |    4 
 man/Extract.solist.Rd            |    4 
 man/Extract.splitppp.Rd          |    4 
 man/Extract.tess.Rd              |    4 
 man/F3est.Rd                     |    2 
 man/Fest.Rd                      |    4 
 man/Fiksel.Rd                    |    4 
 man/Finhom.Rd                    |    4 
 man/FmultiInhom.Rd               |    2 
 man/Frame.Rd                     |    6 
 man/G3est.Rd                     |    2 
 man/Gcom.Rd                      |    4 
 man/Gcross.Rd                    |    4 
 man/Gdot.Rd                      |    4 
 man/Gest.Rd                      |    4 
 man/Geyer.Rd                     |    4 
 man/Gfox.Rd                      |    2 
 man/Ginhom.Rd                    |    4 
 man/Gmulti.Rd                    |    4 
 man/GmultiInhom.Rd               |    2 
 man/Gres.Rd                      |    4 
 man/Hardcore.Rd                  |    4 
 man/Hest.Rd                      |    4 
 man/HierHard.Rd                  |    6 
 man/HierStrauss.Rd               |    6 
 man/HierStraussHard.Rd           |    6 
 man/Hybrid.Rd                    |    4 
 man/Iest.Rd                      |    4 
 man/Jcross.Rd                    |    4 
 man/Jdot.Rd                      |    4 
 man/Jest.Rd                      |    4 
 man/Jinhom.Rd                    |    4 
 man/Jmulti.Rd                    |    4 
 man/K3est.Rd                     |    2 
 man/Kcom.Rd                      |    4 
 man/Kcross.Rd                    |    4 
 man/Kcross.inhom.Rd              |   63 +
 man/Kdot.Rd                      |    4 
 man/Kdot.inhom.Rd                |   65 +
 man/Kest.Rd                      |    4 
 man/Kest.fft.Rd                  |    4 
 man/Kinhom.Rd                    |   12 
 man/Kmark.Rd                     |    4 
 man/Kmeasure.Rd                  |    4 
 man/Kmodel.Rd                    |    4 
 man/Kmodel.dppm.Rd               |    6 
 man/Kmodel.kppm.Rd               |    4 
 man/Kmodel.ppm.Rd                |    2 
 man/Kmulti.Rd                    |    4 
 man/Kmulti.inhom.Rd              |   58 -
 man/Kres.Rd                      |    4 
 man/Kscaled.Rd                   |   10 
 man/Ksector.Rd                   |    6 
 man/LambertW.Rd                  |    4 
 man/Lcross.Rd                    |    4 
 man/Lcross.inhom.Rd              |    4 
 man/Ldot.Rd                      |    4 
 man/Ldot.inhom.Rd                |    4 
 man/LennardJones.Rd              |    4 
 man/Lest.Rd                      |    4 
 man/Linhom.Rd                    |    4 
 man/Math.im.Rd                   |    4 
 man/Math.linim.Rd                |    6 
 man/MinkowskiSum.Rd              |    2 
 man/MultiHard.Rd                 |    6 
 man/MultiStrauss.Rd              |    6 
 man/MultiStraussHard.Rd          |    6 
 man/Ord.Rd                       |    4 
 man/OrdThresh.Rd                 |    4 
 man/PPversion.Rd                 |    4 
 man/PairPiece.Rd                 |    4 
 man/Pairwise.Rd                  |    4 
 man/Penttinen.Rd                 |    4 
 man/Poisson.Rd                   |    4 
 man/Replace.im.Rd                |    4 
 man/SatPiece.Rd                  |    4 
 man/Saturated.Rd                 |    4 
 man/Smooth.Rd                    |    4 
 man/Smooth.fv.Rd                 |    4 
 man/Smooth.msr.Rd                |    2 
 man/Smooth.ppp.Rd                |    4 
 man/Smoothfun.ppp.Rd             |    6 
 man/Softcore.Rd                  |    4 
 man/Strauss.Rd                   |    4 
 man/StraussHard.Rd               |    4 
 man/Triplets.Rd                  |    4 
 man/Tstat.Rd                     |    2 
 man/Window.Rd                    |    6 
 man/WindowOnly.Rd                |    6 
 man/adaptive.density.Rd          |    4 
 man/add.texture.Rd               |    4 
 man/addvar.Rd                    |    4 
 man/affine.Rd                    |    4 
 man/affine.im.Rd                 |    4 
 man/affine.linnet.Rd             |    4 
 man/affine.lpp.Rd                |    4 
 man/affine.owin.Rd               |    4 
 man/affine.ppp.Rd                |    4 
 man/affine.psp.Rd                |    4 
 man/affine.tess.Rd               |    4 
 man/allstats.Rd                  |    4 
 man/alltypes.Rd                  |    4 
 man/angles.psp.Rd                |    4 
 man/anova.lppm.Rd                |    2 
 man/anova.mppm.Rd                |    4 
 man/anova.ppm.Rd                 |    4 
 man/anova.slrm.Rd                |    4 
 man/ants.Rd                      |    2 
 man/anylist.Rd                   |    6 
 man/append.psp.Rd                |    4 
 man/applynbd.Rd                  |    4 
 man/area.owin.Rd                 |    4 
 man/areaGain.Rd                  |    4 
 man/areaLoss.Rd                  |    4 
 man/as.box3.Rd                   |    4 
 man/as.boxx.Rd                   |    6 
 man/as.data.frame.hyperframe.Rd  |    4 
 man/as.data.frame.im.Rd          |    4 
 man/as.data.frame.owin.Rd        |    6 
 man/as.data.frame.ppp.Rd         |    4 
 man/as.data.frame.psp.Rd         |    4 
 man/as.function.fv.Rd            |    4 
 man/as.function.im.Rd            |    6 
 man/as.function.tess.Rd          |    4 
 man/as.fv.Rd                     |    4 
 man/as.hyperframe.Rd             |    4 
 man/as.hyperframe.ppx.Rd         |    4 
 man/as.im.Rd                     |    4 
 man/as.interact.Rd               |    4 
 man/as.layered.Rd                |    6 
 man/as.linfun.Rd                 |    4 
 man/as.linim.Rd                  |    4 
 man/as.linnet.linim.Rd           |    6 
 man/as.linnet.psp.Rd             |    6 
 man/as.lpp.Rd                    |    4 
 man/as.mask.Rd                   |    4 
 man/as.mask.psp.Rd               |    4 
 man/as.matrix.im.Rd              |    4 
 man/as.matrix.owin.Rd            |    4 
 man/as.owin.Rd                   |    6 
 man/as.polygonal.Rd              |    4 
 man/as.ppm.Rd                    |    6 
 man/as.ppp.Rd                    |    4 
 man/as.psp.Rd                    |    4 
 man/as.rectangle.Rd              |    4 
 man/as.solist.Rd                 |    6 
 man/as.tess.Rd                   |    4 
 man/auc.Rd                       |    6 
 man/bdist.pixels.Rd              |    4 
 man/bdist.points.Rd              |    4 
 man/bdist.tiles.Rd               |    4 
 man/beachcolours.Rd              |    4 
 man/beginner.Rd                  |    4 
 man/begins.Rd                    |    6 
 man/berman.test.Rd               |    6 
 man/bind.fv.Rd                   |    4 
 man/blur.Rd                      |    4 
 man/border.Rd                    |    4 
 man/bounding.box.xy.Rd           |    4 
 man/boundingbox.Rd               |    4 
 man/box3.Rd                      |    4 
 man/boxx.Rd                      |    4 
 man/branchlabelfun.Rd            |    6 
 man/bw.diggle.Rd                 |    4 
 man/bw.frac.Rd                   |    4 
 man/bw.ppl.Rd                    |    4 
 man/bw.relrisk.Rd                |    4 
 man/bw.scott.Rd                  |    4 
 man/bw.smoothppp.Rd              |    4 
 man/bw.stoyan.Rd                 |    4 
 man/by.im.Rd                     |    4 
 man/by.ppp.Rd                    |    4 
 man/cauchy.estK.Rd               |    2 
 man/cauchy.estpcf.Rd             |    2 
 man/cbind.hyperframe.Rd          |    4 
 man/cdf.test.Rd                  |    4 
 man/cdf.test.mppm.Rd             |    6 
 man/centroid.owin.Rd             |    6 
 man/chicago.Rd                   |    2 
 man/chop.tess.Rd                 |    4 
 man/chorley.Rd                   |    2 
 man/circdensity.Rd               |    6 
 man/circumradius.Rd              |    2 
 man/clarkevans.Rd                |    2 
 man/clarkevans.test.Rd           |    2 
 man/clickbox.Rd                  |    4 
 man/clickdist.Rd                 |    6 
 man/clickjoin.Rd                 |    2 
 man/clickpoly.Rd                 |    4 
 man/clickppp.Rd                  |    4 
 man/clip.infline.Rd              |    4 
 man/closepairs.Rd                |    4 
 man/closepairs.pp3.Rd            |    6 
 man/closing.Rd                   |    4 
 man/clusterfield.Rd              |    6 
 man/clusterfit.Rd                |    6 
 man/clusterkernel.Rd             |    6 
 man/clusterradius.Rd             |    6 
 man/clusterset.Rd                |    4 
 man/coef.mppm.Rd                 |    4 
 man/coef.ppm.Rd                  |    4 
 man/coef.slrm.Rd                 |    4 
 man/collapse.fv.Rd               |    4 
 man/colourmap.Rd                 |    4 
 man/colourtools.Rd               |    4 
 man/commonGrid.Rd                |    4 
 man/compareFit.Rd                |    4 
 man/compatible.Rd                |    4 
 man/compatible.fasp.Rd           |    4 
 man/compatible.fv.Rd             |    4 
 man/compatible.im.Rd             |    4 
 man/compileK.Rd                  |    2 
 man/complement.owin.Rd           |    4 
 man/concatxy.Rd                  |    4 
 man/connected.Rd                 |    4 
 man/connected.linnet.Rd          |    2 
 man/connected.ppp.Rd             |    4 
 man/contour.im.Rd                |    6 
 man/contour.imlist.Rd            |    6 
 man/convexhull.Rd                |    4 
 man/convexhull.xy.Rd             |    4 
 man/convexify.Rd                 |    6 
 man/convolve.im.Rd               |    4 
 man/coords.Rd                    |    4 
 man/copyExampleFiles.Rd          |    6 
 man/corners.Rd                   |    4 
 man/covering.Rd                  |    2 
 man/crossdist.Rd                 |    2 
 man/crossdist.default.Rd         |    2 
 man/crossdist.lpp.Rd             |    2 
 man/crossdist.pp3.Rd             |    2 
 man/crossdist.ppp.Rd             |    2 
 man/crossdist.ppx.Rd             |    2 
 man/crossdist.psp.Rd             |    4 
 man/crossing.psp.Rd              |    4 
 man/cut.im.Rd                    |    4 
 man/cut.ppp.Rd                   |    4 
 man/data.ppm.Rd                  |    4 
 man/dclf.progress.Rd             |    2 
 man/dclf.sigtrace.Rd             |    8 
 man/dclf.test.Rd                 |    2 
 man/default.dummy.Rd             |    4 
 man/default.expand.Rd            |    4 
 man/default.rmhcontrol.Rd        |    4 
 man/delaunay.Rd                  |    6 
 man/delaunayDistance.Rd          |    6 
 man/delaunayNetwork.Rd           |    6 
 man/deletebranch.Rd              |    4 
 man/deltametric.Rd               |    4 
 man/demohyper.Rd                 |    2 
 man/demopat.Rd                   |    2 
 man/density.lpp.Rd               |    2 
 man/density.ppp.Rd               |    4 
 man/density.psp.Rd               |    4 
 man/density.splitppp.Rd          |    4 
 man/deriv.fv.Rd                  |    4 
 man/detpointprocfamilyfun.Rd     |    6 
 man/dfbetas.ppm.Rd               |    2 
 man/dg.envelope.Rd               |    8 
 man/dg.progress.Rd               |    8 
 man/dg.sigtrace.Rd               |    6 
 man/dg.test.Rd                   |    4 
 man/diagnose.ppm.Rd              |    9 
 man/diameter.Rd                  |    4 
 man/diameter.box3.Rd             |    4 
 man/diameter.boxx.Rd             |    4 
 man/diameter.linnet.Rd           |    2 
 man/diameter.owin.Rd             |    4 
 man/dilated.areas.Rd             |    4 
 man/dilation.Rd                  |    4 
 man/dim.detpointprocfamily.Rd    |    6 
 man/dirichlet.Rd                 |    4 
 man/dirichletAreas.Rd            |    6 
 man/dirichletVertices.Rd         |    6 
 man/dirichletWeights.Rd          |    4 
 man/disc.Rd                      |    4 
 man/discpartarea.Rd              |    4 
 man/discretise.Rd                |    4 
 man/discs.Rd                     |    6 
 man/distcdf.Rd                   |    4 
 man/distfun.Rd                   |    4 
 man/distfun.lpp.Rd               |    4 
 man/distmap.Rd                   |    4 
 man/distmap.owin.Rd              |    4 
 man/distmap.ppp.Rd               |    4 
 man/distmap.psp.Rd               |    4 
 man/divide.linnet.Rd             |    4 
 man/dkernel.Rd                   |    2 
 man/dmixpois.Rd                  |    6 
 man/domain.Rd                    |    6 
 man/dppBessel.Rd                 |    6 
 man/dppCauchy.Rd                 |    6 
 man/dppGauss.Rd                  |    6 
 man/dppMatern.Rd                 |    6 
 man/dppPowerExp.Rd               |    6 
 man/dppapproxkernel.Rd           |    6 
 man/dppapproxpcf.Rd              |    6 
 man/dppeigen.Rd                  |    6 
 man/dppkernel.Rd                 |    6 
 man/dppm.Rd                      |    4 
 man/dppparbounds.Rd              |    6 
 man/dppspecden.Rd                |    6 
 man/dppspecdenrange.Rd           |    6 
 man/dummify.Rd                   |    2 
 man/dummy.ppm.Rd                 |    4 
 man/duplicated.ppp.Rd            |    4 
 man/edge.Ripley.Rd               |    4 
 man/edge.Trans.Rd                |    4 
 man/edges.Rd                     |    6 
 man/edges2triangles.Rd           |    4 
 man/edges2vees.Rd                |    4 
 man/edit.hyperframe.Rd           |    6 
 man/edit.ppp.Rd                  |    6 
 man/eem.Rd                       |    4 
 man/effectfun.Rd                 |    4 
 man/ellipse.Rd                   |    4 
 man/emend.Rd                     |    6 
 man/emend.ppm.Rd                 |    4 
 man/endpoints.psp.Rd             |    4 
 man/envelope.Rd                  |    4 
 man/envelope.envelope.Rd         |    4 
 man/envelope.lpp.Rd              |    2 
 man/envelope.pp3.Rd              |    4 
 man/eroded.areas.Rd              |    4 
 man/erosion.Rd                   |    4 
 man/erosionAny.Rd                |    4 
 man/eval.fasp.Rd                 |    4 
 man/eval.fv.Rd                   |    4 
 man/eval.im.Rd                   |    4 
 man/eval.linim.Rd                |    4 
 man/ewcdf.Rd                     |    4 
 man/exactMPLEstrauss.Rd          |    4 
 man/expand.owin.Rd               |    4 
 man/fardist.Rd                   |    6 
 man/fasp.object.Rd               |    4 
 man/fitin.Rd                     |    4 
 man/fitted.lppm.Rd               |    6 
 man/fitted.mppm.Rd               |    8 
 man/fitted.ppm.Rd                |    4 
 man/fitted.slrm.Rd               |    4 
 man/fixef.mppm.Rd                |    4 
 man/flipxy.Rd                    |    4 
 man/foo.Rd                       |    6 
 man/formula.fv.Rd                |    4 
 man/formula.ppm.Rd               |    2 
 man/fourierbasis.Rd              |    6 
 man/fryplot.Rd                   |    4 
 man/funxy.Rd                     |    4 
 man/fv.Rd                        |    4 
 man/fv.object.Rd                 |    4 
 man/fvnames.Rd                   |    4 
 man/gauss.hermite.Rd             |    6 
 man/gridcentres.Rd               |    4 
 man/gridweights.Rd               |    4 
 man/grow.boxx.Rd                 |    6 
 man/grow.rectangle.Rd            |    6 
 man/harmonic.Rd                  |    4 
 man/harmonise.Rd                 |    6 
 man/harmonise.fv.Rd              |    6 
 man/harmonise.im.Rd              |    4 
 man/harmonise.owin.Rd            |    4 
 man/heather.Rd                   |    4 
 man/hextess.Rd                   |    4 
 man/hierpair.family.Rd           |    6 
 man/hist.im.Rd                   |    4 
 man/hopskel.Rd                   |    6 
 man/humberside.Rd                |    2 
 man/hybrid.family.Rd             |    4 
 man/hyperframe.Rd                |    4 
 man/identify.ppp.Rd              |    4 
 man/identify.psp.Rd              |    4 
 man/idw.Rd                       |    4 
 man/im.Rd                        |    4 
 man/im.apply.Rd                  |    4 
 man/im.object.Rd                 |    4 
 man/imcov.Rd                     |    4 
 man/improve.kppm.Rd              |    4 
 man/incircle.Rd                  |    4 
 man/increment.fv.Rd              |    6 
 man/infline.Rd                   |    4 
 man/influence.ppm.Rd             |    2 
 man/inforder.family.Rd           |    4 
 man/inside.boxx.Rd               |    6 
 man/inside.owin.Rd               |    4 
 man/integral.im.Rd               |    6 
 man/integral.linim.Rd            |    6 
 man/integral.msr.Rd              |   31 
 man/intensity.Rd                 |    4 
 man/intensity.dppm.Rd            |    6 
 man/intensity.lpp.Rd             |    4 
 man/intensity.ppm.Rd             |    2 
 man/intensity.ppp.Rd             |    4 
 man/intensity.ppx.Rd             |    6 
 man/intensity.quadratcount.Rd    |    4 
 man/interp.colourmap.Rd          |    4 
 man/interp.im.Rd                 |    4 
 man/intersect.owin.Rd            |    6 
 man/intersect.tess.Rd            |    4 
 man/invoke.symbolmap.Rd          |    6 
 man/iplot.Rd                     |    4 
 man/ippm.Rd                      |    4 
 man/is.convex.Rd                 |    4 
 man/is.dppm.Rd                   |    6 
 man/is.empty.Rd                  |    4 
 man/is.hybrid.Rd                 |    4 
 man/is.im.Rd                     |    4 
 man/is.lpp.Rd                    |    4 
 man/is.marked.Rd                 |    4 
 man/is.marked.ppm.Rd             |    4 
 man/is.marked.ppp.Rd             |    4 
 man/is.multitype.Rd              |    4 
 man/is.multitype.ppm.Rd          |    4 
 man/is.multitype.ppp.Rd          |    4 
 man/is.owin.Rd                   |    4 
 man/is.ppm.Rd                    |    4 
 man/is.ppp.Rd                    |    4 
 man/is.rectangle.Rd              |    4 
 man/is.stationary.Rd             |    6 
 man/is.subset.owin.Rd            |    4 
 man/istat.Rd                     |    4 
 man/kaplan.meier.Rd              |    4 
 man/kernel.factor.Rd             |   10 
 man/kernel.moment.Rd             |    2 
 man/kernel.squint.Rd             |only
 man/km.rs.Rd                     |    4 
 man/kppm.Rd                      |    4 
 man/laslett.Rd                   |    2 
 man/latest.news.Rd               |    4 
 man/layered.Rd                   |    4 
 man/layerplotargs.Rd             |    4 
 man/layout.boxes.Rd              |    4 
 man/lengths.psp.Rd               |    4 
 man/letterR.Rd                   |    2 
 man/levelset.Rd                  |    4 
 man/leverage.ppm.Rd              |    2 
 man/lgcp.estK.Rd                 |    4 
 man/lgcp.estpcf.Rd               |    4 
 man/linearK.Rd                   |    2 
 man/linearKcross.Rd              |    2 
 man/linearKcross.inhom.Rd        |    2 
 man/linearKdot.Rd                |    2 
 man/linearKdot.inhom.Rd          |    2 
 man/linearKinhom.Rd              |    2 
 man/lineardisc.Rd                |    2 
 man/linearmarkconnect.Rd         |    2 
 man/linearmarkequal.Rd           |    2 
 man/linearpcf.Rd                 |    2 
 man/linearpcfcross.Rd            |    2 
 man/linearpcfcross.inhom.Rd      |    2 
 man/linearpcfdot.Rd              |    2 
 man/linearpcfdot.inhom.Rd        |    2 
 man/linearpcfinhom.Rd            |    2 
 man/linfun.Rd                    |    4 
 man/linim.Rd                     |    2 
 man/linnet.Rd                    |    2 
 man/lintess.Rd                   |    2 
 man/lixellate.Rd                 |    4 
 man/localK.Rd                    |    4 
 man/localKinhom.Rd               |    4 
 man/localpcf.Rd                  |    4 
 man/logLik.dppm.Rd               |    6 
 man/logLik.kppm.Rd               |    6 
 man/logLik.mppm.Rd               |    4 
 man/logLik.ppm.Rd                |    6 
 man/logLik.slrm.Rd               |    4 
 man/lohboot.Rd                   |    4 
 man/lpp.Rd                       |    2 
 man/lppm.Rd                      |    2 
 man/lurking.Rd                   |    4 
 man/lut.Rd                       |    4 
 man/macros                       |only
 man/markconnect.Rd               |    4 
 man/markcorr.Rd                  |    4 
 man/markcrosscorr.Rd             |    6 
 man/marks.Rd                     |    4 
 man/marks.psp.Rd                 |    4 
 man/marks.tess.Rd                |    6 
 man/markstat.Rd                  |    4 
 man/marktable.Rd                 |    4 
 man/markvario.Rd                 |    4 
 man/matclust.estK.Rd             |    2 
 man/matclust.estpcf.Rd           |    2 
 man/maxnndist.Rd                 |    4 
 man/mean.im.Rd                   |    4 
 man/mergeLevels.Rd               |    6 
 man/methods.box3.Rd              |    4 
 man/methods.boxx.Rd              |    4 
 man/methods.dppm.Rd              |    2 
 man/methods.fii.Rd               |    2 
 man/methods.funxy.Rd             |    4 
 man/methods.kppm.Rd              |    2 
 man/methods.layered.Rd           |    4 
 man/methods.linfun.Rd            |    4 
 man/methods.linim.Rd             |    4 
 man/methods.linnet.Rd            |    2 
 man/methods.lpp.Rd               |    2 
 man/methods.lppm.Rd              |    6 
 man/methods.objsurf.Rd           |    4 
 man/methods.pp3.Rd               |    4 
 man/methods.ppx.Rd               |    4 
 man/methods.rho2hat.Rd           |    2 
 man/methods.rhohat.Rd            |    2 
 man/methods.slrm.Rd              |    2 
 man/methods.units.Rd             |    4 
 man/methods.zclustermodel.Rd     |    2 
 man/midpoints.psp.Rd             |    4 
 man/mincontrast.Rd               |    2 
 man/miplot.Rd                    |    4 
 man/model.depends.Rd             |    4 
 man/model.frame.ppm.Rd           |    6 
 man/model.images.Rd              |    6 
 man/model.matrix.ppm.Rd          |    6 
 man/model.matrix.slrm.Rd         |    4 
 man/moribund.Rd                  |    6 
 man/mppm.Rd                      |    4 
 man/msr.Rd                       |   14 
 man/multiplicity.ppp.Rd          |    4 
 man/nearest.raster.point.Rd      |    4 
 man/nearestsegment.Rd            |    4 
 man/nestsplit.Rd                 |    6 
 man/nnclean.Rd                   |    2 
 man/nncorr.Rd                    |    4 
 man/nncross.Rd                   |    4 
 man/nncross.lpp.Rd               |    4 
 man/nncross.pp3.Rd               |    4 
 man/nndensity.Rd                 |    4 
 man/nndist.Rd                    |    2 
 man/nndist.lpp.Rd                |    2 
 man/nndist.pp3.Rd                |    2 
 man/nndist.ppx.Rd                |    2 
 man/nndist.psp.Rd                |    4 
 man/nnfun.Rd                     |    4 
 man/nnfun.lpp.Rd                 |    4 
 man/nnmap.Rd                     |    4 
 man/nnmark.Rd                    |    6 
 man/nnorient.Rd                  |    6 
 man/nnwhich.Rd                   |    2 
 man/nnwhich.lpp.Rd               |    2 
 man/nnwhich.pp3.Rd               |    2 
 man/nnwhich.ppx.Rd               |    2 
 man/nobjects.Rd                  |    4 
 man/npfun.Rd                     |    4 
 man/npoints.Rd                   |    4 
 man/nsegments.Rd                 |    4 
 man/nvertices.Rd                 |    4 
 man/objsurf.Rd                   |    2 
 man/opening.Rd                   |    4 
 man/ord.family.Rd                |    4 
 man/osteo.Rd                     |    2 
 man/overlap.owin.Rd              |    6 
 man/owin.Rd                      |    4 
 man/owin.object.Rd               |    4 
 man/padimage.Rd                  |    6 
 man/pairdist.Rd                  |    2 
 man/pairdist.default.Rd          |    2 
 man/pairdist.lpp.Rd              |    2 
 man/pairdist.pp3.Rd              |    2 
 man/pairdist.ppp.Rd              |    2 
 man/pairdist.ppx.Rd              |    2 
 man/pairdist.psp.Rd              |    4 
 man/pairorient.Rd                |    6 
 man/pairs.im.Rd                  |    4 
 man/pairsat.family.Rd            |    4 
 man/pairwise.family.Rd           |    4 
 man/panel.contour.Rd             |    6 
 man/parameters.Rd                |    4 
 man/parres.Rd                    |    4 
 man/pcf.Rd                       |    4 
 man/pcf.fasp.Rd                  |    4 
 man/pcf.fv.Rd                    |    4 
 man/pcf.ppp.Rd                   |   40 
 man/pcf3est.Rd                   |    2 
 man/pcfcross.Rd                  |    4 
 man/pcfcross.inhom.Rd            |    4 
 man/pcfdot.Rd                    |    4 
 man/pcfdot.inhom.Rd              |    4 
 man/pcfinhom.Rd                  |    4 
 man/pcfmulti.Rd                  |    4 
 man/perimeter.Rd                 |    4 
 man/periodify.Rd                 |    4 
 man/persp.im.Rd                  |    6 
 man/perspPoints.Rd               |    4 
 man/pixelcentres.Rd              |    6 
 man/pixellate.Rd                 |    4 
 man/pixellate.owin.Rd            |    4 
 man/pixellate.ppp.Rd             |    4 
 man/pixellate.psp.Rd             |    6 
 man/pixelquad.Rd                 |    4 
 man/plot.anylist.Rd              |   18 
 man/plot.bermantest.Rd           |    6 
 man/plot.cdftest.Rd              |    4 
 man/plot.colourmap.Rd            |    4 
 man/plot.dppm.Rd                 |    4 
 man/plot.envelope.Rd             |    4 
 man/plot.fasp.Rd                 |    4 
 man/plot.fv.Rd                   |    4 
 man/plot.hyperframe.Rd           |    4 
 man/plot.im.Rd                   |    4 
 man/plot.imlist.Rd               |    6 
 man/plot.influence.ppm.Rd        |   14 
 man/plot.kppm.Rd                 |    6 
 man/plot.laslett.Rd              |    2 
 man/plot.layered.Rd              |    4 
 man/plot.leverage.ppm.Rd         |    9 
 man/plot.linim.Rd                |    2 
 man/plot.linnet.Rd               |    2 
 man/plot.listof.Rd               |   16 
 man/plot.lpp.Rd                  |    4 
 man/plot.lppm.Rd                 |    2 
 man/plot.mppm.Rd                 |    8 
 man/plot.msr.Rd                  |   13 
 man/plot.onearrow.Rd             |    6 
 man/plot.owin.Rd                 |    6 
 man/plot.plotppm.Rd              |    4 
 man/plot.pp3.Rd                  |    6 
 man/plot.ppm.Rd                  |   12 
 man/plot.ppp.Rd                  |   10 
 man/plot.psp.Rd                  |    4 
 man/plot.quad.Rd                 |    4 
 man/plot.quadratcount.Rd         |    4 
 man/plot.quadrattest.Rd          |    4 
 man/plot.rppm.Rd                 |    4 
 man/plot.scan.test.Rd            |    4 
 man/plot.slrm.Rd                 |    4 
 man/plot.solist.Rd               |   18 
 man/plot.splitppp.Rd             |    4 
 man/plot.symbolmap.Rd            |    6 
 man/plot.tess.Rd                 |    4 
 man/plot.textstring.Rd           |    6 
 man/plot.texturemap.Rd           |    6 
 man/plot.yardstick.Rd            |    6 
 man/pointsOnLines.Rd             |    4 
 man/pool.Rd                      |    4 
 man/pool.anylist.Rd              |    6 
 man/pool.envelope.Rd             |    4 
 man/pool.fasp.Rd                 |    4 
 man/pool.fv.Rd                   |    6 
 man/pool.quadrattest.Rd          |    4 
 man/pool.rat.Rd                  |    4 
 man/pp3.Rd                       |    4 
 man/ppm.Rd                       |   28 
 man/ppm.object.Rd                |    4 
 man/ppm.ppp.Rd                   |   28 
 man/ppmInfluence.Rd              |    2 
 man/ppp.Rd                       |    4 
 man/ppp.object.Rd                |    4 
 man/ppx.Rd                       |    4 
 man/predict.dppm.Rd              |    6 
 man/predict.kppm.Rd              |    4 
 man/predict.lppm.Rd              |    2 
 man/predict.mppm.Rd              |    8 
 man/predict.ppm.Rd               |    4 
 man/predict.rppm.Rd              |    4 
 man/predict.slrm.Rd              |    4 
 man/print.im.Rd                  |    4 
 man/print.owin.Rd                |    4 
 man/print.ppm.Rd                 |    4 
 man/print.ppp.Rd                 |    4 
 man/print.psp.Rd                 |    4 
 man/print.quad.Rd                |    4 
 man/profilepl.Rd                 |    4 
 man/progressreport.Rd            |    4 
 man/project2segment.Rd           |    4 
 man/project2set.Rd               |    6 
 man/prune.rppm.Rd                |    4 
 man/pseudoR2.Rd                  |    6 
 man/psp.Rd                       |    4 
 man/psp.object.Rd                |    4 
 man/psst.Rd                      |    4 
 man/psstA.Rd                     |    4 
 man/psstG.Rd                     |    4 
 man/qqplot.ppm.Rd                |    4 
 man/quad.object.Rd               |    4 
 man/quad.ppm.Rd                  |    4 
 man/quadrat.test.Rd              |    4 
 man/quadrat.test.mppm.Rd         |    8 
 man/quadrat.test.splitppp.Rd     |    4 
 man/quadratcount.Rd              |    4 
 man/quadratresample.Rd           |    4 
 man/quadrats.Rd                  |    4 
 man/quadscheme.Rd                |    4 
 man/quadscheme.logi.Rd           |    6 
 man/quantess.Rd                  |    6 
 man/quantile.density.Rd          |    6 
 man/quantile.ewcdf.Rd            |    4 
 man/quantile.im.Rd               |    4 
 man/quasirandom.Rd               |    6 
 man/rCauchy.Rd                   |    2 
 man/rDGS.Rd                      |    2 
 man/rDiggleGratton.Rd            |    2 
 man/rGaussPoisson.Rd             |    4 
 man/rHardcore.Rd                 |    2 
 man/rLGCP.Rd                     |    4 
 man/rMatClust.Rd                 |    4 
 man/rMaternI.Rd                  |    6 
 man/rMaternII.Rd                 |    6 
 man/rMosaicField.Rd              |    4 
 man/rMosaicSet.Rd                |    4 
 man/rNeymanScott.Rd              |    4 
 man/rPenttinen.Rd                |    2 
 man/rPoissonCluster.Rd           |    4 
 man/rQuasi.Rd                    |    6 
 man/rSSI.Rd                      |    6 
 man/rStrauss.Rd                  |    2 
 man/rStraussHard.Rd              |    2 
 man/rThomas.Rd                   |    4 
 man/rVarGamma.Rd                 |    2 
 man/ranef.mppm.Rd                |    4 
 man/range.fv.Rd                  |    4 
 man/raster.x.Rd                  |    6 
 man/rat.Rd                       |    4 
 man/rcell.Rd                     |    4 
 man/rcellnumber.Rd               |    4 
 man/rdpp.Rd                      |    6 
 man/reach.Rd                     |    4 
 man/reach.dppm.Rd                |    6 
 man/reduced.sample.Rd            |    4 
 man/reflect.Rd                   |    4 
 man/relevel.im.Rd                |    6 
 man/reload.or.compute.Rd         |    4 
 man/relrisk.Rd                   |    6 
 man/relrisk.ppm.Rd               |    6 
 man/relrisk.ppp.Rd               |    4 
 man/requireversion.Rd            |    2 
 man/rescale.Rd                   |    4 
 man/rescale.im.Rd                |    4 
 man/rescale.owin.Rd              |    4 
 man/rescale.ppp.Rd               |    4 
 man/rescale.psp.Rd               |    4 
 man/rescue.rectangle.Rd          |    4 
 man/residuals.dppm.Rd            |    6 
 man/residuals.kppm.Rd            |    6 
 man/residuals.mppm.Rd            |    8 
 man/residuals.ppm.Rd             |    4 
 man/residualspaper.Rd            |    4 
 man/rgbim.Rd                     |    4 
 man/rho2hat.Rd                   |    2 
 man/rhohat.Rd                    |    4 
 man/ripras.Rd                    |    4 
 man/rjitter.Rd                   |    4 
 man/rknn.Rd                      |    4 
 man/rlabel.Rd                    |    4 
 man/rlinegrid.Rd                 |    4 
 man/rmh.Rd                       |    4 
 man/rmh.default.Rd               |    4 
 man/rmh.ppm.Rd                   |    4 
 man/rmhcontrol.Rd                |    4 
 man/rmhexpand.Rd                 |    4 
 man/rmhmodel.Rd                  |    4 
 man/rmhmodel.default.Rd          |   14 
 man/rmhmodel.list.Rd             |    4 
 man/rmhmodel.ppm.Rd              |   14 
 man/rmhstart.Rd                  |    4 
 man/rmpoint.Rd                   |    4 
 man/rmpoispp.Rd                  |    4 
 man/rnoise.Rd                    |    6 
 man/roc.Rd                       |    6 
 man/rose.Rd                      |    6 
 man/rotate.Rd                    |    4 
 man/rotate.im.Rd                 |    4 
 man/rotate.owin.Rd               |    4 
 man/rotate.ppp.Rd                |    4 
 man/rotate.psp.Rd                |    4 
 man/rotmean.Rd                   |    6 
 man/round.ppp.Rd                 |    4 
 man/rounding.Rd                  |    4 
 man/rpoint.Rd                    |    4 
 man/rpoisline.Rd                 |    4 
 man/rpoislinetess.Rd             |    4 
 man/rpoislpp.Rd                  |    2 
 man/rpoispp.Rd                   |    6 
 man/rpoispp3.Rd                  |    4 
 man/rpoisppOnLines.Rd            |    4 
 man/rpoisppx.Rd                  |    4 
 man/rppm.Rd                      |    4 
 man/rshift.Rd                    |    4 
 man/rshift.ppp.Rd                |    4 
 man/rshift.psp.Rd                |    4 
 man/rshift.splitppp.Rd           |    4 
 man/rstrat.Rd                    |    4 
 man/rsyst.Rd                     |    4 
 man/rtemper.Rd                   |    6 
 man/rthin.Rd                     |    4 
 man/run.simplepanel.Rd           |    4 
 man/runifdisc.Rd                 |    4 
 man/runiflpp.Rd                  |    2 
 man/runifpoint.Rd                |    4 
 man/runifpoint3.Rd               |    4 
 man/runifpointOnLines.Rd         |    4 
 man/runifpointx.Rd               |    4 
 man/scalardilate.Rd              |    4 
 man/scaletointerval.Rd           |    4 
 man/scan.test.Rd                 |    4 
 man/scanLRTS.Rd                  |    4 
 man/scanpp.Rd                    |    4 
 man/segregation.test.Rd          |    6 
 man/selfcrossing.psp.Rd          |    4 
 man/selfcut.psp.Rd               |    4 
 man/sessionLibs.Rd               |    4 
 man/setcov.Rd                    |    4 
 man/sharpen.Rd                   |    4 
 man/shift.Rd                     |    4 
 man/shift.im.Rd                  |    4 
 man/shift.owin.Rd                |    4 
 man/shift.ppp.Rd                 |    4 
 man/shift.psp.Rd                 |    4 
 man/sidelengths.owin.Rd          |    4 
 man/simba.Rd                     |    2 
 man/simdat.Rd                    |    2 
 man/simplenet.Rd                 |    2 
 man/simplepanel.Rd               |    4 
 man/simplify.owin.Rd             |    4 
 man/simulate.dppm.Rd             |    6 
 man/simulate.kppm.Rd             |    4 
 man/simulate.lppm.Rd             |    6 
 man/simulate.mppm.Rd             |    4 
 man/simulate.ppm.Rd              |    4 
 man/simulate.slrm.Rd             |    4 
 man/slrm.Rd                      |    4 
 man/solapply.Rd                  |    6 
 man/solist.Rd                    |    6 
 man/solutionset.Rd               |    4 
 man/spatdim.Rd                   |    6 
 man/spatialcdf.Rd                |    6 
 man/spatstat-internal.Rd         |   19 
 man/spatstat-package.Rd          |    5 
 man/spatstat.options.Rd          |    6 
 man/split.hyperframe.Rd          |    6 
 man/split.im.Rd                  |    4 
 man/split.msr.Rd                 |only
 man/split.ppp.Rd                 |    4 
 man/split.ppx.Rd                 |    4 
 man/spokes.Rd                    |    4 
 man/square.Rd                    |    4 
 man/stieltjes.Rd                 |    4 
 man/stienen.Rd                   |    6 
 man/stratrand.Rd                 |    4 
 man/studpermu.test.Rd            |    6 
 man/subfits.Rd                   |    4 
 man/subset.hyperframe.Rd         |    6 
 man/subset.ppp.Rd                |    4 
 man/suffstat.Rd                  |    6 
 man/summary.anylist.Rd           |    4 
 man/summary.im.Rd                |    4 
 man/summary.kppm.Rd              |    4 
 man/summary.listof.Rd            |    4 
 man/summary.owin.Rd              |    4 
 man/summary.ppm.Rd               |    4 
 man/summary.ppp.Rd               |    4 
 man/summary.psp.Rd               |    4 
 man/summary.quad.Rd              |    4 
 man/summary.solist.Rd            |    6 
 man/summary.splitppp.Rd          |    4 
 man/sumouter.Rd                  |    4 
 man/superimpose.Rd               |    4 
 man/superimpose.lpp.Rd           |    6 
 man/symbolmap.Rd                 |    4 
 man/tess.Rd                      |    6 
 man/texturemap.Rd                |    4 
 man/textureplot.Rd               |    4 
 man/thinNetwork.Rd               |    2 
 man/thomas.estK.Rd               |    6 
 man/thomas.estpcf.Rd             |    6 
 man/tile.areas.Rd                |    4 
 man/tileindex.Rd                 |    4 
 man/tilenames.Rd                 |    4 
 man/tiles.Rd                     |    4 
 man/tiles.empty.Rd               |    6 
 man/timed.Rd                     |    4 
 man/transect.im.Rd               |    4 
 man/transmat.Rd                  |    6 
 man/treebranchlabels.Rd          |    4 
 man/treeprune.Rd                 |    4 
 man/triangulate.owin.Rd          |    4 
 man/trim.rectangle.Rd            |    4 
 man/triplet.family.Rd            |    4 
 man/tweak.colourmap.Rd           |    4 
 man/union.quad.Rd                |    4 
 man/unique.ppp.Rd                |    4 
 man/unitname.Rd                  |    4 
 man/unmark.Rd                    |    4 
 man/unnormdensity.Rd             |    4 
 man/unstack.msr.Rd               |only
 man/unstack.ppp.Rd               |only
 man/update.detpointprocfamily.Rd |    6 
 man/update.interact.Rd           |    4 
 man/update.kppm.Rd               |    6 
 man/update.ppm.Rd                |    4 
 man/update.rmhcontrol.Rd         |    4 
 man/update.symbolmap.Rd          |    6 
 man/valid.Rd                     |    6 
 man/valid.detpointprocfamily.Rd  |    6 
 man/valid.ppm.Rd                 |    4 
 man/varblock.Rd                  |    4 
 man/varcount.Rd                  |    4 
 man/vargamma.estK.Rd             |    2 
 man/vargamma.estpcf.Rd           |    2 
 man/vcov.kppm.Rd                 |    4 
 man/vcov.mppm.Rd                 |    4 
 man/vcov.ppm.Rd                  |   10 
 man/vcov.slrm.Rd                 |    4 
 man/vertices.Rd                  |    4 
 man/volume.Rd                    |    6 
 man/where.max.Rd                 |    2 
 man/whist.Rd                     |    4 
 man/will.expand.Rd               |    4 
 man/with.fv.Rd                   |    4 
 man/with.hyperframe.Rd           |    4 
 man/with.msr.Rd                  |   11 
 man/yardstick.Rd                 |    6 
 man/zapsmall.im.Rd               |    4 
 man/zclustermodel.Rd             |    2 
 src/denspt.c                     |  220 +++-
 src/pairloop.h                   |    4 
 tests/testsAtoN.R                |  114 +-
 vignettes/packagesizes.txt       |    2 
 vignettes/updates.Rnw            |  115 ++
 1039 files changed, 4645 insertions(+), 3510 deletions(-)

More information about spatstat at CRAN
Permanent link

Package oce updated to version 0.9-19 with previous version 0.9-18 dated 2016-02-11

Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature.
Author: Dan Kelley [aut, cre], Clark Richards [aut], Chantelle Layton [ctb, cph] (curl() coauthor), British Geological Survey [ctb, cph] (magnetic-field fortran subroutine)
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>

Diff between oce versions 0.9-18 dated 2016-02-11 and 0.9-19 dated 2016-07-08

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More information about oce at CRAN
Permanent link

Package mpoly updated to version 1.0.2 with previous version 1.0.1 dated 2016-04-30

Title: Symbolic Computation and More with Multivariate Polynomials
Description: Symbolic computing with multivariate polynomials in R.
Author: David Kahle [aut, cre]
Maintainer: David Kahle <david.kahle@gmail.com>

Diff between mpoly versions 1.0.1 dated 2016-04-30 and 1.0.2 dated 2016-07-08

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More information about mpoly at CRAN
Permanent link

Package lmomco updated to version 2.2.4 with previous version 2.2.3 dated 2016-06-03

Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions
Description: Extensive functions for the theory of L-moments (LMs) in addition to probability-weighted moments (PWMs), and parameter (p) estimation for numerous familiar and not-so-familiar distributions. Estimation of LMs for the same distributions is provided as are L-moment ratio diagrams. Estimation of LMs for right-tail and left-tail censoring by known or unknown threshold and also by indicator variable is available. Asymmetric trimmed LMs (TL-moments, TLMs) are supported as are numerical integrations to dynamically compute trajectories of select TLM ratios for TL-moment ratio diagram construction. LMs of residual (resid.) and reversed (rev.) resid. life are implemented along with 13 operators on quantile functions that are useful in reliability, lifetime, and survival analysis. Exact analytical bootstrap estimates of order statistics, LMs, and variances-covariances of LMs are provided. The Harri-Coble Tau34-squared Test for Normality is available. Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail censoring (RC) encompasses: Asymmetric (Asy.) Exponential (Exp.) Power [L], Asy. Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen.) Exp. Poisson [L], Gen. Extreme Value [L], Gen. Lambda [L,TL], Gen. Logistic [L), Gen. Normal [L], Gen. Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L], Kumaraswamy [L], Laplace [L], Linear Mean Residual Quantile Function [L], Normal [L], 3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev. Gumbel [L+RC], Rice/Rician (L), Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L]. LMs have multivariate analogs; the sample L-comoments (LCMs) are implemented and might have considerable application with copulas because LCMs measure asymmetric association and higher comoments or comovements of variables.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>

Diff between lmomco versions 2.2.3 dated 2016-06-03 and 2.2.4 dated 2016-07-08

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 man/lcomoms2.Rd         |    3 
 man/lmom2par.Rd         |    1 
 man/lmomemu.Rd          |    6 -
 man/lmomgep.Rd          |    6 -
 man/lmomgev.Rd          |    1 
 man/lmomrice.Rd         |    7 -
 man/lmrdiscord.Rd       |    4 
 man/mle2par.Rd          |only
 man/mps2par.Rd          |  156 ++++++++++++++++++++++++++++------
 man/parrice.Rd          |   17 +--
 man/parwei.Rd           |    7 -
 man/pdfemu.Rd           |    6 -
 man/pdfst3.Rd           |    2 
 man/plotlmrdia.Rd       |    3 
 man/pp.Rd               |    3 
 man/qua2ci.simple.Rd    |    3 
 man/quaemu.Rd           |    3 
 man/ralmomco.Rd         |    3 
 man/riglmomco.Rd        |    3 
 man/sentiv.curve.Rd     |    3 
 37 files changed, 467 insertions(+), 175 deletions(-)

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New package unvotes with initial version 0.1.0
Package: unvotes
Type: Package
Title: United Nations General Assembly Voting Data
Version: 0.1.0
Authors@R: person("David", "Robinson", email = "admiral.david@gmail.com", role = c("aut", "cre"))
Description: Historical voting data of the United Nations General Assembly. This includes votes for each country in each roll call, as well as descriptions and topic classifications for each vote.
License: MIT + file LICENSE
LazyData: TRUE
URL: http://github.com/dgrtwo/unvotes
VignetteBuilder: knitr
BugReports: http://github.com/dgrtwo/unvotes/issues
Depends: R (>= 2.10)
Suggests: knitr, dplyr, readxl, countrycode, tidyr, lubridate, devtools, rmarkdown, ggplot2
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-08 04:21:34 UTC; dgrtwo
Author: David Robinson [aut, cre]
Maintainer: David Robinson <admiral.david@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-08 11:51:36

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Package rscala updated to version 1.0.13 with previous version 1.0.12 dated 2016-06-03

Title: Bi-Directional Interface Between R and Scala with Callbacks
Description: The Scala interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala. Scala versions in the 2.11.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>

Diff between rscala versions 1.0.12 dated 2016-06-03 and 1.0.13 dated 2016-07-08

 rscala-1.0.12/rscala/inst/java/rscala_2.10-1.0.12.jar    |only
 rscala-1.0.12/rscala/inst/java/rscala_2.11-1.0.12.jar    |only
 rscala-1.0.12/rscala/java/rscala_2.10-1.0.12-sources.jar |only
 rscala-1.0.12/rscala/java/rscala_2.11-1.0.12-sources.jar |only
 rscala-1.0.13/rscala/DESCRIPTION                         |   18 
 rscala-1.0.13/rscala/LICENSE                             |    2 
 rscala-1.0.13/rscala/MD5                                 |   34 -
 rscala-1.0.13/rscala/NAMESPACE                           |    6 
 rscala-1.0.13/rscala/NEWS                                |   25 +
 rscala-1.0.13/rscala/R/common.R                          |   51 +-
 rscala-1.0.13/rscala/R/protocol.R                        |    3 
 rscala-1.0.13/rscala/R/rServer.R                         |   95 ++--
 rscala-1.0.13/rscala/R/scalaInterpreter.R                |  324 +++++++--------
 rscala-1.0.13/rscala/R/zzz.R                             |    8 
 rscala-1.0.13/rscala/README                              |    2 
 rscala-1.0.13/rscala/inst/README                         |    2 
 rscala-1.0.13/rscala/inst/java/rscala_2.11-1.0.13.jar    |only
 rscala-1.0.13/rscala/java/rscala_2.11-1.0.13-sources.jar |only
 rscala-1.0.13/rscala/man/constructor.Rd                  |   43 -
 rscala-1.0.13/rscala/man/eval.Rd                         |   36 -
 rscala-1.0.13/rscala/man/settings.Rd                     |    6 
 21 files changed, 372 insertions(+), 283 deletions(-)

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New package StratifiedBalancing with initial version 0.1.0
Package: StratifiedBalancing
Type: Package
Title: Performs Stratified Covariate Balancing for Data with Discrete and Continuous Outcome Variables
Version: 0.1.0
Author: Amr ElRafey
Maintainer: Amr ElRafey <ae2504@columbia.edu>
Description: Stratified covariate balancing through naturally occurring strata to adjust for confounding and interaction effects. Contains 2 primary functions which perform stratification and return adjusted odds along with naturally occurring strata.
License: GPL-2
LazyData: TRUE
Depends: plyr
NeedsCompilation: no
Packaged: 2016-07-07 22:32:51 UTC; HAP
Repository: CRAN
Date/Publication: 2016-07-08 11:48:05

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New package robustrank with initial version 7.15-16
Package: robustrank
LazyLoad: yes
LazyData: yes
Version: 7.15-16
Title: Robust Rank-Based Tests
Author: Youyi Fong <youyifong@gmail.com>
Maintainer: Youyi Fong <youyifong@gmail.com>
Depends: R (>= 3.0.0)
Suggests: RUnit, VGAM, copula, mvtnorm
Imports: pracma
Description: Implements several rank-based tests, including the modified Wilcoxon-Mann-Whitney two sample location test, also known as the Fligner-Policello test.
License: GPL-2
NeedsCompilation: yes
Packaged: 2016-07-07 23:13:44 UTC; Youyi
Repository: CRAN
Date/Publication: 2016-07-08 11:51:35

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Package hkevp updated to version 1.1.2 with previous version 1.1.1 dated 2016-07-05

Title: Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012)
Description: Several procedures around a particular hierarchical model for extreme value: the HKEVP of Reich and Shaby (2012) <DOI:10.1214/12-AOAS591>. Simulation, estimation and spatial extrapolation of this model are available for extreme value data. A special case of this process is also handled: the Latent Variable Model of Davison et al. (2012) <DOI:10.1214/11-STS376>.
Author: Quentin Sebille
Maintainer: Quentin Sebille <quentin.sebille@gmail.com>

Diff between hkevp versions 1.1.1 dated 2016-07-05 and 1.1.2 dated 2016-07-08

 DESCRIPTION             |    8 ++++----
 MD5                     |   24 ++++++++++++------------
 R/RcppExports.R         |    8 ++++----
 R/hkevp.expmeasure.R    |    6 +++---
 R/hkevp.fit.R           |   20 ++++----------------
 R/hkevp.predict.R       |   18 +++++++++---------
 R/latent.fit.R          |   20 ++------------------
 man/hkevp.expmeasure.Rd |   10 +++++-----
 man/hkevp.fit.Rd        |   11 ++++-------
 man/hkevp.predict.Rd    |   18 +++++++++---------
 man/latent.fit.Rd       |    7 +------
 src/RcppExports.cpp     |   14 ++++++--------
 src/hkevp.cpp           |   10 ++++------
 13 files changed, 67 insertions(+), 107 deletions(-)

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New package KSD with initial version 0.1.0
Package: KSD
Type: Package
Title: Kernelized Stein Discrepancy
Version: 0.1.0
Date: 2016-06-05
Authors@R: c(person("Qiang", "Liu",role="aut",email="qliu@cs.dartmouth.edu"),person("Min Hyung", "Kang", role = c("aut","cre"), email = "Minhyung.Daniel.Kang@gmail.com"))
Description: An adaptation of Kernelized Stein Discrepancy, a discrepancy statistic for measuring differences between two probability distributions based on combination of Stein's method and reproducing kernel Hilbert space theory. It provides a method for a user to evaluate how similar two distributions are. It is based on "A Kernelized Stein Discrepancy for Goodness-of-fit Tests and Model Evaluation" by Liu, Lee, and Jordan, available at <http://arxiv.org/abs/1602.03253>.
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: pryr, graphics, stats
Suggests: datasets, ggplot2, gridExtra, mclust, mvtnorm
NeedsCompilation: no
Packaged: 2016-07-08 02:18:06 UTC; user
Author: Qiang Liu [aut], Min Hyung Kang [aut, cre]
Maintainer: Min Hyung Kang <Minhyung.Daniel.Kang@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-08 11:52:57

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Package DCchoice updated to version 0.0.15 with previous version 0.0.14 dated 2016-03-15

Title: Analyzing Dichotomous Choice Contingent Valuation Data
Description: Functions for analyzing dichotomous choice contingent valuation (CV) data. It provides functions for estimating parametric and nonparametric models for single-, one-and-one-half-, and double-bounded CV data.
Author: Tomoaki Nakatani [aut, cph] (original developer), Hideo Aizaki [aut, cre] (code patches), Kazuo Sato [ctb] (theoretical part of the manual)
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between DCchoice versions 0.0.14 dated 2016-03-15 and 0.0.15 dated 2016-07-08

 DESCRIPTION             |   12 
 MD5                     |   26 +-
 NAMESPACE               |  108 ++++----
 R/bootCI.R              |  281 ++++++++++++----------
 R/dbchoice.R            |  601 ++++++++++++++++++++++++------------------------
 R/krCI.R                |  262 ++++++++++----------
 R/oohbchoice.R          |only
 R/sbchoice.R            |  536 ++++++++++++++++++++++--------------------
 data/oohbsyn.rda        |only
 inst/CITATION           |   40 +--
 man/DCchoice-package.Rd |  371 ++++++++++++++++-------------
 man/dbchoice.Rd         |  568 ++++++++++++++++++++++-----------------------
 man/oohbchoice.Rd       |only
 man/oohbsyn.Rd          |only
 man/sbchoice.Rd         |  428 +++++++++++++++++-----------------
 man/turnbull.Rd         |  448 ++++++++++++++++++-----------------
 16 files changed, 1914 insertions(+), 1767 deletions(-)

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Package Compositional updated to version 1.4 with previous version 1.3 dated 2016-05-27

Title: Compositional Data Analysis
Description: A collection of functions for compositional data analysis.
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut]
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>

Diff between Compositional versions 1.3 dated 2016-05-27 and 1.4 dated 2016-07-08

 DESCRIPTION                  |   12 -
 MD5                          |  267 +++++++++++++++++++++----------------------
 NAMESPACE                    |    6 
 R/alfa.R                     |    4 
 R/alfa.knn.R                 |    6 
 R/alfa.pcr.R                 |    6 
 R/alfa.reg.R                 |   51 ++++----
 R/alfa.tune.R                |    8 -
 R/alfadist.R                 |    1 
 R/alfainv.R                  |   10 +
 R/alfareg.tune.R             |    2 
 R/alfaridge.plot.R           |    2 
 R/alfaridge.tune.R           |    2 
 R/bivt.contour.R             |  124 ++++++++++---------
 R/comp.den.R                 |  134 +++++++++++----------
 R/comp.kerncontour.R         |    8 -
 R/comp.knn.R                 |   38 +++++-
 R/comp.test.R                |    7 +
 R/compknn.tune.R             |   43 ++++--
 R/diri.est.R                 |   27 ----
 R/diri.nr.R                  |   79 ++++++------
 R/diri.reg.R                 |   18 +-
 R/diri.reg2.R                |only
 R/dirimean.test.R            |only
 R/eel.test1.R                |   93 +++++++-------
 R/eel.test2.R                |  137 +++++++++++-----------
 R/el.test1.R                 |    2 
 R/el.test2.R                 |   20 +--
 R/frechet.R                  |    7 -
 R/glm.pcr.R                  |   18 +-
 R/glmpcr.tune.R              |   14 +-
 R/hotel1T2.R                 |   23 ++-
 R/hotel2T2.R                 |   32 ++---
 R/james.R                    |   48 +++----
 R/js.compreg.R               |   12 -
 R/kl.compreg.R               |    5 
 R/kl.diri.R                  |   17 +-
 R/maov.R                     |   22 +--
 R/maovjames.R                |   21 +--
 R/mix.compnorm.R             |   22 ++-
 R/mixnorm.contour.R          |   34 +++--
 R/mkde.R                     |   22 +--
 R/mkde.tune.R                |   25 ++--
 R/multivreg.R                |   23 ++-
 R/multivt.R                  |    6 
 R/norm.contour.R             |    1 
 R/ols.compreg.R              |   18 +-
 R/pcr.R                      |   18 +-
 R/pcr.tune.R                 |   46 +++++--
 R/rcompnorm.R                |    7 -
 R/rcompsn.R                  |    7 -
 R/rcompt.R                   |    7 -
 R/rda.R                      |   11 -
 R/rda.tune.R                 |   28 ++--
 R/rdiri.R                    |    2 
 R/ridge.plot.R               |   11 +
 R/ridge.reg.R                |   43 ++++--
 R/ridge.tune.R               |   63 ++++++----
 R/rmixcomp.R                 |   27 ++--
 R/rmvnorm.R                  |   15 +-
 R/rmvt.R                     |   10 -
 R/spat.med.R                 |   47 ++++---
 R/spatmed.reg.R              |  108 +++++++++--------
 R/sscov.R                    |   21 ++-
 R/sym.test.R                 |   10 +
 R/ternary.R                  |    6 
 man/Compositional-package.Rd |    6 
 man/alfa.Rd                  |    2 
 man/alfa.pcr.Rd              |    2 
 man/alfa.profile.Rd          |    6 
 man/alfa.rda.Rd              |    2 
 man/alfa.reg.Rd              |    2 
 man/alfa.ridge.Rd            |    2 
 man/alfa.tune.Rd             |    2 
 man/alfadist.Rd              |    2 
 man/alfainv.Rd               |    4 
 man/alfapcr.tune.Rd          |    2 
 man/alfarda.tune.Rd          |    2 
 man/alfareg.tune.Rd          |   13 +-
 man/alfaridge.plot.Rd        |    2 
 man/alfaridge.tune.Rd        |    2 
 man/bic.mixcompnorm.Rd       |    2 
 man/bivt.contour.Rd          |    2 
 man/comp.den.Rd              |    6 
 man/comp.kerncontour.Rd      |    2 
 man/comp.knn.Rd              |    8 -
 man/comp.reg.Rd              |    6 
 man/comp.test.Rd             |    6 
 man/compknn.tune.Rd          |    5 
 man/diri.contour.Rd          |    2 
 man/diri.est.Rd              |   16 +-
 man/diri.nr.Rd               |    2 
 man/diri.reg.Rd              |   58 +++++----
 man/dirimean.test.Rd         |only
 man/eel.test1.Rd             |    2 
 man/eel.test2.Rd             |   12 -
 man/el.test1.Rd              |    2 
 man/el.test2.Rd              |    8 -
 man/frechet.Rd               |    4 
 man/glm.pcr.Rd               |    2 
 man/glmpcr.tune.Rd           |    4 
 man/helm.Rd                  |   10 -
 man/hotel2T2.Rd              |   10 -
 man/james.Rd                 |   10 -
 man/kl.compreg.Rd            |    6 
 man/kl.diri.Rd               |    2 
 man/maov.Rd                  |    2 
 man/maovjames.Rd             |    2 
 man/mix.compnorm.Rd          |    2 
 man/mixnorm.contour.Rd       |    2 
 man/mkde.Rd                  |    2 
 man/mkde.tune.Rd             |    2 
 man/multivreg.Rd             |    2 
 man/multivt.Rd               |    2 
 man/norm.contour.Rd          |    2 
 man/ols.compreg.Rd           |    6 
 man/pcr.Rd                   |    2 
 man/pcr.tune.Rd              |    2 
 man/rcompnorm.Rd             |    2 
 man/rcompsn.Rd               |    2 
 man/rcompt.Rd                |    2 
 man/rda.Rd                   |    2 
 man/rda.tune.Rd              |    2 
 man/rdiri.Rd                 |    2 
 man/ridge.plot.Rd            |    2 
 man/ridge.reg.Rd             |    2 
 man/ridge.tune.Rd            |    2 
 man/rmixcomp.Rd              |    2 
 man/rmvnorm.Rd               |    2 
 man/rmvt.Rd                  |    2 
 man/skewnorm.contour.Rd      |    2 
 man/spat.med.Rd              |    2 
 man/spatmed.reg.Rd           |    7 -
 man/sscov.Rd                 |   13 +-
 man/sym.test.Rd              |    4 
 man/ternary.Rd               |    2 
 136 files changed, 1271 insertions(+), 1013 deletions(-)

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New package corrr with initial version 0.1.0
Package: corrr
Type: Package
Version: 0.1.0
Title: Correlations in R
Description: A tool for exploring correlations. It makes it possible to easily perform routine tasks when exploring correlation matrices such as ignoring the diagonal, focusing on the correlations of certain variables against others, or rearranging and visualising the matrix in terms of the strength of the correlations.
Authors@R: c( person("Simon", "Jackson", email = "drsimonjackson@gmail.com", role = c("aut", "cre")) )
URL: https://github.com/drsimonj/corrr
BugReports: https://github.com/drsimonj/corrr/issues
Depends: R (>= 3.3.1), dplyr (>= 0.5.0)
LazyData: yes
License: MIT + file LICENSE
RoxygenNote: 5.0.1
Suggests: testthat (>= 1.0.2), knitr (>= 1.13), rmarkdown (>= 0.9.6)
Imports: magrittr (>= 1.5), tidyr (>= 0.5.1), ggplot2 (>= 2.1.0), seriation (>= 1.2-0), lazyeval (>= 0.2.0), purrr (>= 0.2.2), tibble (>= 1.1)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-07 23:02:23 UTC; Simon
Author: Simon Jackson [aut, cre]
Maintainer: Simon Jackson <drsimonjackson@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-08 11:48:07

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Package treeHFM updated to version 1.0.0.1 with previous version 1.0.0 dated 2016-06-06

Title: Hidden Factor Graph Models
Description: Hidden Factor graph models generalise Hidden Markov Models to tree structured data. The distinctive feature of 'treeHFM' is that it learns a transition matrix for first order (sequential) and for second order (splitting) events. It can be applied to all discrete and continuous data that is structured as a binary tree. In the case of continuous observations, 'treeHFM' has Gaussian distributions as emissions.
Author: Henrik Failmezger, Achim Tresch
Maintainer: Henrik Failmezger <Henrik.Failmezger@googlemail.com>

Diff between treeHFM versions 1.0.0 dated 2016-06-06 and 1.0.0.1 dated 2016-07-08

 DESCRIPTION                     |    6 +++---
 MD5                             |    6 +++---
 src/ParamContainerEmissions.cpp |    8 ++++----
 src/matUtils.cpp                |   12 ++++++------
 4 files changed, 16 insertions(+), 16 deletions(-)

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Package STB updated to version 0.6.3.1 with previous version 0.6.3 dated 2016-06-30

Title: Simultaneous Tolerance Bounds
Description: Provides an implementation of simultaneous tolerance bounds (STB), useful for checking whether a numeric vector fits to a hypothetical null-distribution or not. Furthermore, there are functions for computing STB (bands, intervals) for random variates of linear mixed models fitted with package 'VCA'. All kinds of, possibly transformed (studentized, standardized, Pearson-type transformed) random variates (residuals, random effects), can be assessed employing STB-methodology.
Author: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Maintainer: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>

Diff between STB versions 0.6.3 dated 2016-06-30 and 0.6.3.1 dated 2016-07-08

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
 src/stb.c   |    4 ++++
 3 files changed, 9 insertions(+), 5 deletions(-)

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Package minimaxdesign updated to version 0.1.0.1 with previous version 0.1.0 dated 2016-04-21

Title: Minimax and Minimax Projection Designs
Description: The 'minimaxdesign' package provides two main functions: mMcPSO() and miniMaxPro(), which generates minimax designs and minimax projection designs using clustering and particle swarm optimization (PSO) techniques. These designs can be used in a variety of settings, e.g., as space-filling designs for computer experiments or sensor allocation designs. A detailed description of the two designs and the employed algorithms can be found in Mak and Joseph (2016).
Author: Simon Mak
Maintainer: Simon Mak <smak6@gatech.edu>

Diff between minimaxdesign versions 0.1.0 dated 2016-04-21 and 0.1.0.1 dated 2016-07-08

 DESCRIPTION       |    6 +++---
 MD5               |   12 ++++++------
 src/CtoB.cpp      |    4 ++++
 src/header.h      |    2 ++
 src/kmeanspso.cpp |    4 ++++
 src/mMcrit.cpp    |    2 ++
 src/subfunc.cpp   |    2 ++
 7 files changed, 23 insertions(+), 9 deletions(-)

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Package CerioliOutlierDetection updated to version 1.1.5 with previous version 1.0.8 dated 2014-08-02

Title: Outlier Detection Using the Iterated RMCD Method of Cerioli (2010)
Description: Implements the iterated RMCD method of Cerioli (2010) for multivariate outlier detection via robust Mahalanobis distances. Also provides the finite-sample RMCD method discussed in the paper, as well as the methods provided in Hardin and Rocke (2005) and Green and Martin (2014).
Author: Christopher G. Green [aut, cre], R. Doug Martin [ths]
Maintainer: Christopher G. Green <christopher.g.green@gmail.com>

Diff between CerioliOutlierDetection versions 1.0.8 dated 2014-08-02 and 1.1.5 dated 2016-07-08

 DESCRIPTION                    |   22 ++---
 MD5                            |   18 ++--
 NAMESPACE                      |    1 
 R/cerioli10.fsrmcd.test.r      |   15 ++-
 R/cerioli10.irmcd.test.r       |   22 +++--
 man/CerioliOutlierDetection.Rd |    7 +
 man/cerioli2010.fsrmcd.test.Rd |   69 ++++++++++-----
 man/cerioli2010.irmcd.test.Rd  |  177 ++++++++++++++++++++++++++++++++++-------
 man/ch99AsymptoticDF.Rd        |   10 +-
 man/hr05AdjustedDF.Rd          |   11 +-
 10 files changed, 257 insertions(+), 95 deletions(-)

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Package frailtypack updated to version 2.9.3.1 with previous version 2.9.3 dated 2016-07-07

Title: General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction
Description: The following several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametric estimation can be fit using this R package: 1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox proportional hazard model. Clustered and recurrent survival times can be studied. 2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope). 3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects. 4) Joint frailty models in the context of the joint modelling for recurrent events with terminal event for clustered data or not. A joint frailty model for two semi-competing risks and clustered data is also proposed. 5) Joint general frailty models in the context of the joint modelling for recurrent events with terminal event data with two independent frailty terms. 6) Joint Nested frailty models in the context of the joint modelling for recurrent events with terminal event, for hierarchically clustered data (with two levels of clustering) by including two iid gamma random effects. 7) Multivariate joint frailty models for two types of recurrent events and a terminal event. 8) Joint models for longitudinal data and a terminal event. 9) Trivariate joint models for longitudinal data, recurrent events and a terminal event. Prediction values are available. Left-truncated (not for Joint model), right-censored data, interval-censored data (only for Cox proportional hazard and shared frailty model) and strata are allowed. In each model, the random effects have the gamma or normal distribution. Now, you can also consider time-varying covariates effects in Cox, shared and joint frailty models (1-5). The package includes concordance measures for Cox proportional hazards models and for shared frailty models.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey Mauguen, Agnieszka Krol, Amadou Diakite, Alexandre Laurent and Myriam Lopez
Maintainer: Virginie Rondeau <Virginie.Rondeau@isped.u-bordeaux2.fr>

Diff between frailtypack versions 2.9.3 dated 2016-07-07 and 2.9.3.1 dated 2016-07-08

 frailtypack-2.9.3.1/frailtypack/DESCRIPTION   |    6 +++---
 frailtypack-2.9.3.1/frailtypack/MD5           |    5 ++---
 frailtypack-2.9.3.1/frailtypack/src/joint.f90 |    2 +-
 frailtypack-2.9.3/frailtypack/build           |only
 4 files changed, 6 insertions(+), 7 deletions(-)

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