Title: A Wrapper for the 'Highcharts' Library
Description: A wrapper for the 'Highcharts' library including
shortcut functions to plot R objects. 'Highcharts'
<http://www.highcharts.com/> is a charting library offering
numerous chart types with a simple configuration syntax.
Author: Joshua Kunst [aut, cre],
Nuno Agostinho [ctb] (hchart.survfit, densities and
hc_add_series_scatter),
Eduardo Flores [ctb] (First version hc_add_series_df_tidy),
Dean Kilfoyle [ctb] (First version hc_add_series_boxplot),
Adline Dsilva [ctb] (First version Matrix heatmap)
Maintainer: Joshua Kunst <jbkunst@gmail.com>
Diff between highcharter versions 0.3.0 dated 2016-03-28 and 0.4.0 dated 2016-07-14
highcharter-0.3.0/highcharter/inst/htmlwidgets/lib/highcharts-4.2.3 |only highcharter-0.3.0/highcharter/man/hc_demo.Rd |only highcharter-0.3.0/highcharter/man/hc_get_colors.Rd |only highcharter-0.3.0/highcharter/man/hc_get_dash_styles.Rd |only highcharter-0.3.0/highcharter/man/list.parse2.Rd |only highcharter-0.4.0/highcharter/DESCRIPTION | 32 highcharter-0.4.0/highcharter/MD5 | 235 +- highcharter-0.4.0/highcharter/NAMESPACE | 75 highcharter-0.4.0/highcharter/NEWS.md | 83 + highcharter-0.4.0/highcharter/R/api-hc-extras.R | 46 highcharter-0.4.0/highcharter/R/api-hc.R | 123 + highcharter-0.4.0/highcharter/R/assertthat.R | 18 highcharter-0.4.0/highcharter/R/data-uscountygeojson.R | 2 highcharter-0.4.0/highcharter/R/data-worldgeojson.R | 2 highcharter-0.4.0/highcharter/R/export-hc.R | 18 highcharter-0.4.0/highcharter/R/hc-charts.R |only highcharter-0.4.0/highcharter/R/hchart.R | 810 ++++++++-- highcharter-0.4.0/highcharter/R/helpers.R | 342 +++- highcharter-0.4.0/highcharter/R/highcharter-package.R | 2 highcharter-0.4.0/highcharter/R/highcharter.R | 44 highcharter-0.4.0/highcharter/R/hw_grid.R |only highcharter-0.4.0/highcharter/R/shortcuts-ts-xts.R | 37 highcharter-0.4.0/highcharter/R/shortcuts.R | 317 +++ highcharter-0.4.0/highcharter/R/theme-538.R | 57 highcharter-0.4.0/highcharter/R/theme-chalk.R | 2 highcharter-0.4.0/highcharter/R/theme-darkunica.R | 174 +- highcharter-0.4.0/highcharter/R/theme-db.R | 144 - highcharter-0.4.0/highcharter/R/theme-economist.R | 43 highcharter-0.4.0/highcharter/R/theme-flat.R | 46 highcharter-0.4.0/highcharter/R/theme-ft.R | 49 highcharter-0.4.0/highcharter/R/theme-google.R | 33 highcharter-0.4.0/highcharter/R/theme-gridlight.R | 30 highcharter-0.4.0/highcharter/R/theme-handdrawn.R | 6 highcharter-0.4.0/highcharter/R/theme-null.R | 6 highcharter-0.4.0/highcharter/R/theme-sandsignika.R | 9 highcharter-0.4.0/highcharter/R/theme-smpl.R | 5 highcharter-0.4.0/highcharter/R/theme-sparkline.R |only highcharter-0.4.0/highcharter/R/theme.R | 4 highcharter-0.4.0/highcharter/R/zzz.R | 80 highcharter-0.4.0/highcharter/README.md | 51 highcharter-0.4.0/highcharter/build/vignette.rds |binary highcharter-0.4.0/highcharter/demo/scatter-ex.R | 13 highcharter-0.4.0/highcharter/demo/shiny-ex.R | 2 highcharter-0.4.0/highcharter/inst/doc/replicating-highcharts-demos.html | 72 highcharter-0.4.0/highcharter/inst/htmlwidgets/highchart.yaml | 20 highcharter-0.4.0/highcharter/inst/htmlwidgets/highchart2.js | 2 highcharter-0.4.0/highcharter/inst/htmlwidgets/highchart2.yaml | 4 highcharter-0.4.0/highcharter/inst/htmlwidgets/lib/delaunay.js |only highcharter-0.4.0/highcharter/inst/htmlwidgets/lib/highcharts-4.2.4 |only highcharter-0.4.0/highcharter/inst/htmlwidgets/lib/htmlwdgtgrid |only highcharter-0.4.0/highcharter/man/color_classes.Rd |only highcharter-0.4.0/highcharter/man/color_stops.Rd |only highcharter-0.4.0/highcharter/man/colorize.Rd |only highcharter-0.4.0/highcharter/man/colorize_vector.Rd | 12 highcharter-0.4.0/highcharter/man/create_yaxis.Rd |only highcharter-0.4.0/highcharter/man/dash_styles.Rd |only highcharter-0.4.0/highcharter/man/datetime_to_timestamp.Rd | 4 highcharter-0.4.0/highcharter/man/export_hc.Rd | 2 highcharter-0.4.0/highcharter/man/get_hc_series_from_df.Rd |only highcharter-0.4.0/highcharter/man/hc_add_series.Rd | 3 highcharter-0.4.0/highcharter/man/hc_add_series_boxplot.Rd |only highcharter-0.4.0/highcharter/man/hc_add_series_density.Rd |only highcharter-0.4.0/highcharter/man/hc_add_series_df.Rd |only highcharter-0.4.0/highcharter/man/hc_add_series_flags.Rd | 4 highcharter-0.4.0/highcharter/man/hc_add_series_labels_values.Rd | 3 highcharter-0.4.0/highcharter/man/hc_add_series_list.Rd |only highcharter-0.4.0/highcharter/man/hc_add_series_map.Rd | 7 highcharter-0.4.0/highcharter/man/hc_add_series_ohlc.Rd | 3 highcharter-0.4.0/highcharter/man/hc_add_series_scatter.Rd | 18 highcharter-0.4.0/highcharter/man/hc_add_series_times_values.Rd | 3 highcharter-0.4.0/highcharter/man/hc_add_series_treemap.Rd | 9 highcharter-0.4.0/highcharter/man/hc_add_series_ts.Rd | 3 highcharter-0.4.0/highcharter/man/hc_add_series_xts.Rd | 3 highcharter-0.4.0/highcharter/man/hc_colorAxis.Rd | 4 highcharter-0.4.0/highcharter/man/hc_colors.Rd | 2 highcharter-0.4.0/highcharter/man/hc_drilldown.Rd | 8 highcharter-0.4.0/highcharter/man/hc_elementId.Rd |only highcharter-0.4.0/highcharter/man/hc_motion.Rd |only highcharter-0.4.0/highcharter/man/hc_theme_538.Rd | 4 highcharter-0.4.0/highcharter/man/hc_theme_chalk.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_darkunica.Rd | 4 highcharter-0.4.0/highcharter/man/hc_theme_db.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_economist.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_flat.Rd | 4 highcharter-0.4.0/highcharter/man/hc_theme_ft.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_google.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_gridlight.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_handdrawn.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_null.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_sandsignika.Rd | 2 highcharter-0.4.0/highcharter/man/hc_theme_smpl.Rd | 4 highcharter-0.4.0/highcharter/man/hc_theme_sparkline.Rd |only highcharter-0.4.0/highcharter/man/hc_xAxis.Rd | 12 highcharter-0.4.0/highcharter/man/hcbar.Rd |only highcharter-0.4.0/highcharter/man/hchart.survfit.Rd |only highcharter-0.4.0/highcharter/man/hchist.Rd |only highcharter-0.4.0/highcharter/man/hcpie.Rd |only highcharter-0.4.0/highcharter/man/hcts.Rd |only highcharter-0.4.0/highcharter/man/hcwaffle.Rd |only highcharter-0.4.0/highcharter/man/hex_to_rgba.Rd | 2 highcharter-0.4.0/highcharter/man/highchart.Rd | 7 highcharter-0.4.0/highcharter/man/highchart2.Rd | 7 highcharter-0.4.0/highcharter/man/highcharts_demo.Rd |only highcharter-0.4.0/highcharter/man/hw_grid.Rd |only highcharter-0.4.0/highcharter/man/list_parse.Rd |only highcharter-0.4.0/highcharter/man/uscountygeojson.Rd | 2 highcharter-0.4.0/highcharter/man/worldgeojson.Rd | 2 107 files changed, 2272 insertions(+), 920 deletions(-)
Title: Cluster Distances Through Trees
Description: Create a measure of inter-point dissimilarity useful
for clustering mixed data, and, optionally, perform the clustering.
Author: Sam Buttrey
Maintainer: Sam Buttrey <buttrey@nps.edu>
Diff between treeClust versions 1.1-1 dated 2015-07-23 and 1.1-6 dated 2016-07-14
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NAMESPACE | 3 + R/rpart.predict.leaves.R | 87 ++++++++++++++++++++++++++++++++++++++++++++--- R/treeClust.R | 15 ++++---- R/treeClust.dist.R |only R/treeClust.rpart.R | 11 +++++ man/tcnewdata.Rd | 8 ++-- man/treeClust.Rd | 4 +- man/treeClust.dist.Rd |only 10 files changed, 123 insertions(+), 29 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-23 1.1.5
2015-11-08 1.1.4
2015-11-02 1.1.3
2015-05-12 1.1.2
2015-04-22 1.1
2015-03-10 1.0
Title: Exponentiation Operations
Description: Computation of matrix and scalar exponentiation.
Author: Albert Dorador
Maintainer: Albert Dorador <albert.dorador@estudiant.upc.edu>
Diff between powerplus versions 1.0 dated 2016-02-24 and 2.0 dated 2016-07-14
powerplus-1.0/powerplus/R/Matexpfinal.R |only powerplus-1.0/powerplus/R/explusfinal.R |only powerplus-1.0/powerplus/man/Matexp.Rd |only powerplus-1.0/powerplus/man/explus.Rd |only powerplus-2.0/powerplus/DESCRIPTION | 8 +++++--- powerplus-2.0/powerplus/MD5 | 12 ++++++------ powerplus-2.0/powerplus/NAMESPACE | 2 +- powerplus-2.0/powerplus/R/MatpowV2.R |only powerplus-2.0/powerplus/R/explusV2.R |only powerplus-2.0/powerplus/man/MatpowV2.Rd |only powerplus-2.0/powerplus/man/explusV2.Rd |only 11 files changed, 12 insertions(+), 10 deletions(-)
Title: Modeling Framework for Cellular Communities in their
Environments
Description: Can be used for simulation of organisms living in
communities. Each organism is represented individually and genome scale
metabolic models determine the uptake and release of compounds. Biological
processes such as movement, diffusion, chemotaxis and kinetics are available
along with data analysis techniques.
Author: Eugen Bauer [aut],
Johannes Zimmermann [aut, cre]
Maintainer: Johannes Zimmermann <j.zimmermann@iem.uni-kiel.de>
Diff between BacArena versions 1.0.1 dated 2016-01-06 and 1.5.0 dated 2016-07-14
DESCRIPTION | 12 MD5 | 156 ++- NAMESPACE | 49 + NEWS | 18 R/Arena.R | 1553 +++++++++++++++++++++++++++-------- R/Organism.R | 442 ++++++--- R/RcppExports.R | 12 R/Stuff.R | 689 +++++++++++++++ R/Substance.R | 9 README.md | 7 build/vignette.rds |binary inst/doc/BacArena-Introduction.R | 34 inst/doc/BacArena-Introduction.Rmd | 57 - man/Arena-class.Rd | 8 man/Arena-constructor.Rd | 2 man/Eval-class.Rd | 2 man/Organism-class.Rd | 10 man/Organism-constructor.Rd | 6 man/Substance-constructor.Rd | 2 man/Substance.Rd | 2 man/addDefaultMed.Rd |only man/addEssentialMed.Rd |only man/addEval.Rd | 8 man/addOrg.Rd | 13 man/addSubs.Rd | 10 man/cellgrowth.Rd | 17 man/changeDiff.Rd | 8 man/changeFobj.Rd | 2 man/changeOrg.Rd | 6 man/changeSub.Rd | 10 man/checkCorr.Rd | 8 man/checkPhen.Rd | 13 man/checkPhen_par.Rd |only man/chemotaxis.Rd | 6 man/constrain.Rd | 8 man/consume.Rd | 8 man/createGradient.Rd | 8 man/dat2mat.Rd | 4 man/diffuse.Rd |only man/diffuse_par.Rd |only man/evalArena.Rd | 18 man/extractMed.Rd | 15 man/findFeeding.Rd | 14 man/findFeeding2.Rd |only man/findFeeding3.Rd |only man/findInArena.Rd |only man/flushSubs.Rd | 10 man/getArena.Rd | 8 man/getCorrM.Rd | 8 man/getPhenoMat.Rd | 8 man/getPhenotype.Rd | 17 man/getSubHist.Rd |only man/getSublb.Rd | 6 man/getVarSubs.Rd |only man/growExp.Rd | 14 man/growLin.Rd | 12 man/growth.Rd | 19 man/growth_par.Rd |only man/lsd.Rd |only man/lysis.Rd | 4 man/minePheno.Rd | 8 man/move.Rd | 14 man/optimizeLP.Rd | 21 man/plotAbundance.Rd |only man/plotCurves.Rd | 8 man/plotCurves2.Rd | 24 man/plotFluxVar.Rd |only man/plotGrowthCurve.Rd |only man/plotInterNum.Rd |only man/plotPhenCurve.Rd |only man/plotPhenNum.Rd |only man/plotShadowCost.Rd |only man/plotSpecActivity.Rd |only man/plotSubCurve.Rd |only man/plotSubUsage.Rd |only man/plotSubVar.Rd |only man/plotTotFlux.Rd | 8 man/redEval.Rd |only man/reset_screen.Rd |only man/rmSubs.Rd |only man/selPheno.Rd | 10 man/setKinetics.Rd |only man/simBac.Rd | 14 man/simBac_par.Rd |only man/simEnv.Rd | 30 man/simEnv_par.Rd |only man/statPheno.Rd | 8 man/stirEnv.Rd | 6 man/usd.Rd |only src/RcppExports.cpp | 40 src/diff.cpp | 15 src/duplicate.cpp |only src/move.cpp |only vignettes/BacArena-Introduction.Rmd | 57 - vignettes/BacArena-Introduction.html | 640 ++++++-------- 95 files changed, 3051 insertions(+), 1204 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-16 0.7.0.0
2015-07-19 0.6.0.0
Title: Power and Sample Size Based on Two One-Sided t-Tests (TOST) for
(Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but eventually useful
if the question of 'non-superiority' must be evaluated.
The power and sample size calculations based on non-inferiority test may
also performed via 'expected' power in case of uncertain (estimated)
variability.
-----
Contains functions power.scABEL() and sampleN.scABEL() to calculate power
and sample size for the BE decision via scaled (widened) BE acceptance
limits (EMA recommended) based on simulations.
Contains also functions scABEL.ad() and sampleN.scABEL.ad() to iteratively
adjust alpha in order to maintain the overall consumer risk in ABEL studies
and adapt the sample size for the loss in power.
Contains further functions power.RSABE() and sampleN.RSABE() to calculate
power and sample size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate
power and sample size for the BE decision via the FDA procedure for NTID's
based on simulations.
Contains further functions power.HVNTID() and sampleN.HVNTID() to calculate
power and sample size for the BE decision via the FDA procedure for
highly variable NTID's (see FDA Dabigatran / rivaroxaban guidances)
-----
Contains functions for power analysis of a sample size plan for ABE
(pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA())
analysing power if deviating from assumptions of the plan.
-----
Contains further functions for power calculations / sample size estimation
for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [aut],
Benjamin Lang [aut]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>
Diff between PowerTOST versions 1.3-6 dated 2016-06-06 and 1.4-2 dated 2016-07-14
PowerTOST-1.3-6/PowerTOST/R/power_RSABE_pure.R |only PowerTOST-1.3-6/PowerTOST/R/power_scABEL_pure.R |only PowerTOST-1.4-2/PowerTOST/DESCRIPTION | 10 PowerTOST-1.4-2/PowerTOST/MD5 | 79 +- PowerTOST-1.4-2/PowerTOST/NAMESPACE | 4 PowerTOST-1.4-2/PowerTOST/NEWS | 41 + PowerTOST-1.4-2/PowerTOST/R/CVfromCI_BL.R | 18 PowerTOST-1.4-2/PowerTOST/R/Fieller.R | 8 PowerTOST-1.4-2/PowerTOST/R/SampleSize.R | 10 PowerTOST-1.4-2/PowerTOST/R/SampleSize_HVNTID.R | 6 PowerTOST-1.4-2/PowerTOST/R/SampleSize_doseprop.R | 2 PowerTOST-1.4-2/PowerTOST/R/SampleSize_noninf.R | 14 PowerTOST-1.4-2/PowerTOST/R/expSampleSize.R | 10 PowerTOST-1.4-2/PowerTOST/R/expSampleSize_noninf.R | 16 PowerTOST-1.4-2/PowerTOST/R/helper.R | 20 PowerTOST-1.4-2/PowerTOST/R/helper_exppwr.R |only PowerTOST-1.4-2/PowerTOST/R/power_RSABE.R | 30 - PowerTOST-1.4-2/PowerTOST/R/power_scABEL.R | 70 ++ PowerTOST-1.4-2/PowerTOST/R/power_scABEL2.R | 27 - PowerTOST-1.4-2/PowerTOST/R/pwrA_S3methods.R | 267 ++++++---- PowerTOST-1.4-2/PowerTOST/R/sampleN.scABEL.ad.R | 105 +-- PowerTOST-1.4-2/PowerTOST/R/sampleN_2TOST.R | 12 PowerTOST-1.4-2/PowerTOST/R/samplesize_RSABE.R | 15 PowerTOST-1.4-2/PowerTOST/R/samplesize_RSABE_NTID.R | 8 PowerTOST-1.4-2/PowerTOST/R/samplesize_scABEL.R | 105 ++- PowerTOST-1.4-2/PowerTOST/R/samplesize_scABEL2.R | 42 - PowerTOST-1.4-2/PowerTOST/R/scABEL.R | 15 PowerTOST-1.4-2/PowerTOST/R/scABEL.ad.R | 91 +-- PowerTOST-1.4-2/PowerTOST/inst/doc/Implementation_scaledABE_sims.pdf |binary PowerTOST-1.4-2/PowerTOST/man/CVfromCI.Rd | 8 PowerTOST-1.4-2/PowerTOST/man/pa.ABE.Rd | 69 +- PowerTOST-1.4-2/PowerTOST/man/pa.NTIDFDA.Rd | 51 - PowerTOST-1.4-2/PowerTOST/man/pa.scABE.Rd | 60 +- PowerTOST-1.4-2/PowerTOST/man/power.HVNTID.Rd | 10 PowerTOST-1.4-2/PowerTOST/man/power.RSABE.Rd | 46 + PowerTOST-1.4-2/PowerTOST/man/power.scABEL.Rd | 44 - PowerTOST-1.4-2/PowerTOST/man/reg_const.Rd | 12 PowerTOST-1.4-2/PowerTOST/man/sampleN.2TOST.Rd | 6 PowerTOST-1.4-2/PowerTOST/man/sampleN.RSABE.Rd | 18 PowerTOST-1.4-2/PowerTOST/man/sampleN.scABEL.Rd | 37 - PowerTOST-1.4-2/PowerTOST/man/sampleN.scABEL.ad.Rd | 42 - PowerTOST-1.4-2/PowerTOST/man/scABEL.ad.Rd | 47 + 42 files changed, 834 insertions(+), 641 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources (`rpart', `RWeka', `PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the `party' package are provided based
on the new infrastructure.
Author: Torsten Hothorn [aut, cre],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.0-5 dated 2016-02-05 and 1.1-0 dated 2016-07-14
DESCRIPTION | 27 +++++++++++++-------------- MD5 | 38 +++++++++++++++++++++----------------- NAMESPACE | 30 ++++++++++++++++++++++++++---- R/as.party.R | 33 ++++++++++++++++++++------------- R/cforest.R | 5 +++-- R/ctree.R | 8 ++++++-- R/modelparty.R | 10 +++++----- R/palmtree.R |only R/party.R | 24 ++++++++++++++++++++++++ R/plot.R | 6 ++++-- build/vignette.rds |binary inst/NEWS.Rd | 27 +++++++++++++++++++++++++++ inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary man/palmtree.Rd |only man/panelfunctions.Rd | 9 ++++++--- man/party-coercion.Rd | 6 ++++-- tests/Rplots.pdf |only tests/results-regtest.Rda |only vignettes/mob.Rnw | 8 ++++---- 22 files changed, 163 insertions(+), 68 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre],
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-5 dated 2016-05-04 and 1.4-6 dated 2016-07-14
DESCRIPTION | 10 +- MD5 | 36 ++++----- R/expressions.R | 101 +++++++++++-------------- R/helpers.R | 56 +++++++++----- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary inst/NEWS | 11 ++ inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.Rnw | 9 +- inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary tests/Examples/multcomp-Ex.Rout.save | 4 - tests/bugfix.R | 3 tests/bugfix.Rout.save | 12 +-- tests/regtest-interface-extended.R | 72 +++++++++++++++--- tests/regtest-interface-extended.Rout.save | 114 ++++++++++++++++++++++------- tests/regtest-survival.R |only tests/regtest-survival.Rout.save |only vignettes/generalsiminf.Rnw | 9 +- 20 files changed, 287 insertions(+), 150 deletions(-)
More information about matrixLaplacian at CRAN
Permanent link
Title: Download Stats of R Packages
Description: Monthly download stats of 'CRAN' and 'Bioconductor' packages.
Download stats of 'CRAN' packages is from the 'RStudio' 'CRAN mirror', see <http://cranlogs.r-pkg.org>.
'Bioconductor' package download stats is at <https://bioconductor.org/packages/stats/>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between dlstats versions 0.0.5 dated 2016-06-24 and 0.0.6 dated 2016-07-14
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/bioc_stats.R | 6 +++--- inst/doc/dlstats.html | 30 +++++++++++++++--------------- 4 files changed, 24 insertions(+), 24 deletions(-)
Title: Diverse Basic Statistical and Graphical Functions
Description: Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé <mx.herve@gmail.com>
Diff between RVAideMemoire versions 0.9-56 dated 2016-06-06 and 0.9-57 dated 2016-07-14
DESCRIPTION | 14 ++-- MD5 | 130 ++++++++++++++++++++++----------------- NAMESPACE | 26 ++++--- NEWS | 20 ++++++ R/G.bintest.R | 2 R/MVA.anova.R | 25 ++++--- R/MVA.cmv.R | 24 +++++-- R/MVA.cor.R | 4 - R/MVA.cv.R | 39 +++++++---- R/MVA.ident.R | 8 +- R/MVA.synt.R | 28 +++++++- R/MVA.test.R | 23 +++--- R/OR.multinom.R |only R/cdf.discrete.R |only R/chisq.bintest.R | 22 ++++-- R/cochran.qtest.R | 2 R/cond.multinom.R |only R/cor.multcomp.R | 2 R/cramer.R |only R/cramer.test.R | 12 --- R/dunn.test.R |only R/fisher.bintest.R | 2 R/multinomial.multcomp.R | 14 +++- R/multinomial.test.R | 1 R/multinomial.theo.multcomp.R | 18 ++++- R/pairwise.MVA.test.R |only R/pairwise.factorfit.R |only R/pairwise.perm.manova.R | 14 ++-- R/pairwise.perm.t.test.R | 4 - R/perm.anova.R | 62 +++++++++--------- R/perm.bartlett.test.R | 8 +- R/perm.cor.test.R | 7 +- R/perm.t.test.R | 11 +-- R/perm.var.test.R | 9 +- R/prop.multinom.R | 18 ++++- R/se.R | 9 ++ R/test.multinom.R |only R/wald.ptheo.multinom.test.R |only R/wald.ptheo.test.R | 2 R/zzz.R | 2 man/MVA.anova.Rd | 2 man/MVA.cmv.Rd | 18 ++++- man/MVA.cv.Rd | 15 +++- man/MVA.scoreplot.Rd | 2 man/MVA.scores.Rd | 2 man/MVA.synt.Rd | 2 man/MVA.test.Rd | 16 +++- man/OR.multinom.Rd |only man/PLSDA.VIP.Rd | 2 man/RVAideMemoire-package.Rd | 4 - man/cdf.discrete.Rd |only man/chisq.bintest.Rd | 5 + man/cond.multinom.Rd |only man/cramer.Rd |only man/dunn.test.Rd |only man/mod.Rd | 2 man/multinomial.multcomp.Rd | 2 man/multinomial.test.Rd | 2 man/multinomial.theo.multcomp.Rd | 8 +- man/pairwise.MVA.test.Rd |only man/pairwise.factorfit.Rd |only man/pairwise.perm.manova.Rd | 6 + man/pairwise.perm.t.test.Rd | 6 + man/pcor.Rd | 2 man/pcor.test.Rd | 2 man/perm.anova.Rd | 6 + man/perm.bartlett.test.Rd | 5 + man/perm.cor.test.Rd | 6 + man/perm.t.test.Rd | 5 + man/perm.var.test.Rd | 5 + man/prop.multinom.Rd | 2 man/prop.multinom.test.Rd | 2 man/se.Rd | 17 +++-- man/test.multinom.Rd |only man/wald.ptheo.multinom.test.Rd |only 75 files changed, 460 insertions(+), 248 deletions(-)
Title: Open Perimetry Interface
Description: Implementation of the Open Perimetry Interface (OPI) for simulating and controlling visual field machines using R. The OPI is a standard for interfacing with visual field testing machines (perimeters). It specifies basic functions that allow many visual field tests to be constructed. As of February 2016 it is fully implemented on the Octopus 600 and Octopus 900 and partially on the Heidelberg Edge Perimeter, the Kowa AP 7000 and the CrewT imo. It also has a cousin: the R package visualFields, which has tools for analysing and manipulating visual field data.
Author: Andrew Turpin, David Lawson, Matthias Muller
Maintainer: Andrew Turpin <aturpin@unimelb.edu.au>
Diff between OPI versions 2.3 dated 2015-11-10 and 2.5 dated 2016-07-14
ChangeLog | 8 ++++++++ DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- R/imoClient.r |only R/kowaAP7000Client.r | 4 +++- R/octopus900Client.r | 23 ++++++++++++++++------- R/opi.r | 11 +++++++++++ man/opiInitialize.Rd | 34 +++++++++++++++++++++++++++++----- man/opiQueryDevice.Rd | 6 ++++-- man/opiStaticStimulus.Rd | 17 +++++++++++++++++ 10 files changed, 102 insertions(+), 28 deletions(-)
Title: Curve Fitting and Mixture Toxicity Assessment
Description: Curve Fitting for monotonic(sigmoidal) & non-monotonic(J-shaped)
concentration-response data. Prediction of mixture toxicity based on reference
models such as 'concentration addition', 'independent action', and 'generalized
concentration addition'.
Author: Xiangwei Zhu
Maintainer: Xiangwei Zhu <xwzhunc@gmail.com>
Diff between mixtox versions 1.3 dated 2016-05-09 and 1.3.1 dated 2016-07-14
DESCRIPTION | 10 +- MD5 | 36 +++++----- NAMESPACE | 7 + R/CEx.R | 4 - R/NOEC.R | 12 +++ R/curveFit.R | 198 +++++++++++++++++++++++--------------------------------- R/figPlot.R |only R/nmECx.R | 3 R/showEq.R | 6 - R/tuneFit.R | 78 +++++++++++++--------- data/staval.rda |binary man/NOEC.Rd | 10 +- man/curveFit.Rd | 78 ++++++++-------------- man/figPlot.Rd |only man/mixtox.Rd | 11 +-- man/nmECx.Rd | 6 - man/qq4res.Rd | 4 - man/showEq.Rd | 2 man/staval.Rd | 10 +- man/tuneFit.Rd | 57 +++++++++------- 20 files changed, 259 insertions(+), 273 deletions(-)
Title: Posterior Distribution of Extreme Value Models in R
Description: Provides some function to perform posterior estimation for some distribution, with emphasis to extreme value distributions. It contains some extreme datasets, and functions that perform the runs of posterior points of the GPD and GEV distribution. The package calculate some important extreme measures like return level for each t periods of time, and some plots as the predictive distribution, and return level plots.
Author: Fernando Ferraz do Nascimento [aut, cre], Wyara Vanesa Moura e Silva [aut, ctb]
Maintainer: Fernando Ferraz do Nascimento <fernandofn@ufpi.edu.br>
Diff between MCMC4Extremes versions 1.0 dated 2015-04-01 and 1.1 dated 2016-07-14
MCMC4Extremes-1.0/MCMC4Extremes/R/posterior.gamma.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/posterior.gev.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/posterior.gpd.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/posterior.gpd.exp.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/posterior.gumbel.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/posterior.normal.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/predictive.gev.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/predictive.gpd.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/predictive.gumbel.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/retlevel.gev.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/retlevel.gev.graph.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/retlevel.gpd.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/retlevel.gpd.graph.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/retlevel.gumbel.R |only MCMC4Extremes-1.0/MCMC4Extremes/R/retlevel.gumbel.graph.R |only MCMC4Extremes-1.0/MCMC4Extremes/man/posterior.gamma.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/posterior.gev.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/posterior.gpd.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/posterior.gpd.exp.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/posterior.gumbel.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/posterior.normal.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/predictive.gev.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/predictive.gpd.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/predictive.gumbel.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/retlevel.gev.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/retlevel.gev.graph.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/retlevel.gpd.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/retlevel.gpd.graph.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/retlevel.gumbel.Rd |only MCMC4Extremes-1.0/MCMC4Extremes/man/retlevel.gumbel.graph.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/DESCRIPTION | 11 - MCMC4Extremes-1.1/MCMC4Extremes/MD5 | 77 +++++------ MCMC4Extremes-1.1/MCMC4Extremes/NAMESPACE | 15 ++ MCMC4Extremes-1.1/MCMC4Extremes/R/dggev.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/gammap.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/gevp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/ggevp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/gpdp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/gumbelp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/normalp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/pggev.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/plot.gevp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/plot.ggevp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/plot.gpdp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/plot.gumbelp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/plot.normalp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/qggev.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/rggev.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/summary.gevp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/summary.ggevp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/summary.gpdp.R |only MCMC4Extremes-1.1/MCMC4Extremes/R/summary.gumbelp.R |only MCMC4Extremes-1.1/MCMC4Extremes/man/barcelos.Rd | 2 MCMC4Extremes-1.1/MCMC4Extremes/man/dggev.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/fajardo.Rd | 2 MCMC4Extremes-1.1/MCMC4Extremes/man/gammap.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/gevp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/ggevp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/gpdp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/gumbelp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/gurgueia.Rd | 2 MCMC4Extremes-1.1/MCMC4Extremes/man/ibovespa.Rd | 2 MCMC4Extremes-1.1/MCMC4Extremes/man/normalp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/plot.gevp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/plot.ggevp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/plot.gpdp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/plot.gumbelp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/plot.normalp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/summary.gevp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/summary.ggevp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/summary.gpdp.Rd |only MCMC4Extremes-1.1/MCMC4Extremes/man/summary.gumbelp.Rd |only 72 files changed, 65 insertions(+), 46 deletions(-)
Title: Irucka Embry's Miscellaneous Data Collection
Description: Miscellaneous data sets [Engineering Economics, Environmental/
Water Resources Engineering, US Presidential Elections].
Author: Irucka Embry [aut, cre]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between iemiscdata versions 0.5.2 dated 2016-06-13 and 0.6.0 dated 2016-07-14
DESCRIPTION | 10 +- MD5 | 108 ++++++++++++++++++++----- NEWS.md | 9 +- R/data-i1.R |only R/data-i10.R |only R/data-i12.R |only R/data-i15.R |only R/data-i18.R |only R/data-i1_50.R |only R/data-i2.R |only R/data-i20.R |only R/data-i25.R |only R/data-i3.R |only R/data-i4.R |only R/data-i5.R |only R/data-i6.R |only R/data-i7.R |only R/data-i8.R |only R/data-i9.R |only R/data-i_25.R |only R/data-i_50.R |only R/data-i_75.R |only R/data-nchannel.R | 2 R/data-nmetalpipe.R | 4 R/data-npartfull.R | 2 R/data-pres_elect1.R |only R/data-r10.R |only R/data-r20.R |only R/data-r8.R |only R/iemiscdata.R | 6 - README.md | 124 +++++++++++++---------------- build/vignette.rds |binary data/i1.RData |only data/i10.RData |only data/i12.RData |only data/i15.RData |only data/i18.RData |only data/i1_50.RData |only data/i2.RData |only data/i20.RData |only data/i25.RData |only data/i3.RData |only data/i4.RData |only data/i5.RData |only data/i6.RData |only data/i7.RData |only data/i8.RData |only data/i9.RData |only data/i_25.RData |only data/i_50.RData |only data/i_75.RData |only data/pres_elect1.RData |only data/r10.RData |only data/r20.RData |only data/r8.RData |only inst/doc/Mannings-n-examples-vignette.R | 86 +++++++++++--------- inst/doc/Mannings-n-examples-vignette.Rmd | 86 +++++++++++--------- inst/doc/Mannings-n-examples-vignette.html | 90 +++++++++++---------- inst/doc/View-PDF-table-vignette.R |only inst/doc/View-PDF-table-vignette.Rmd | 6 - inst/doc/View-PDF-table-vignette.html | 4 man/i1.Rd |only man/i10.Rd |only man/i12.Rd |only man/i15.Rd |only man/i18.Rd |only man/i1_50.Rd |only man/i2.Rd |only man/i20.Rd |only man/i25.Rd |only man/i3.Rd |only man/i4.Rd |only man/i5.Rd |only man/i6.Rd |only man/i7.Rd |only man/i8.Rd |only man/i9.Rd |only man/i_25.Rd |only man/i_50.Rd |only man/i_75.Rd |only man/iemiscdata.Rd | 6 - man/nchannel.Rd | 2 man/nmetalpipe.Rd | 4 man/npartfull.Rd | 2 man/pres_elect1.Rd |only man/r10.Rd |only man/r20.Rd |only man/r8.Rd |only vignettes/Mannings-n-examples-vignette.Rmd | 86 +++++++++++--------- vignettes/View-PDF-table-vignette.Rmd | 6 - 90 files changed, 375 insertions(+), 268 deletions(-)
Title: Irucka Embry's Miscellaneous Functions
Description: A collection of Irucka Embry's miscellaneous functions
(Engineering Economics, Environmental/Water Resources Engineering,
Geometry, Statistics, GNU Octave length functions, etc.).
Author: Irucka Embry [aut, cre], Felix Andrews [aut, ctb] (zoo), Hans Werner
Borchers [aut, ctb] (pracma), Samit Basu [aut, ctb] (FreeMat)
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between iemisc versions 0.9.0 dated 2016-06-13 and 0.9.1 dated 2016-07-14
DESCRIPTION | 7 +- MD5 | 32 +++++++------ NEWS.md | 11 +++- R/Manningcirc.R | 14 +++++ R/Manningpara.R | 2 R/Manningrect.R | 7 ++ R/Manningtrap.R | 4 + R/Manningtri.R | 3 + README.md | 22 ++++++++ build |only inst/doc |only man/Manningcirc.Rd | 14 +++++ man/Manningpara.Rd | 2 man/Manningrect.Rd | 7 ++ man/Manningtrap.Rd | 4 + man/Manningtri.Rd | 3 + vignettes/Open-Channel-Flow_Examples.Rmd | 76 +++++++++++++++++++++---------- 17 files changed, 164 insertions(+), 44 deletions(-)
Title: Dynamic Models for Survival Data
Description: Functions to fit time-varying coefficient models for interval
censored and right censored survival data. Three major
approaches are implemented: 1) Bayesian Cox model with
time-independent, time-varying or dynamic coefficients for
right censored and interval censored data; 2) Spline based
time-varying coefficient Cox model for right censored data;
3) Transformation model with time-varying coefficients for
right censored data using estimating equations.
Author: Wenjie Wang [cre, ctb],
Ming-Hui Chen [aut],
Xiaojing Wang [aut],
Jun Yan [aut]
Maintainer: Wenjie Wang <wenjie.2.wang@uconn.edu>
Diff between dynsurv versions 0.2-2 dated 2014-05-01 and 0.3-0 dated 2016-07-14
dynsurv-0.2-2/dynsurv/COPYING |only dynsurv-0.2-2/dynsurv/man/jump.bayesCox.Rd |only dynsurv-0.2-2/dynsurv/man/nu.bayesCox.Rd |only dynsurv-0.3-0/dynsurv/ChangeLog | 39 + dynsurv-0.3-0/dynsurv/DESCRIPTION | 36 + dynsurv-0.3-0/dynsurv/MD5 | 59 +- dynsurv-0.3-0/dynsurv/NAMESPACE | 105 ++-- dynsurv-0.3-0/dynsurv/R/bayesCox.R | 591 +++++++++++++++++----------- dynsurv-0.3-0/dynsurv/R/coef.R | 362 ++++++++++------- dynsurv-0.3-0/dynsurv/R/data.R |only dynsurv-0.3-0/dynsurv/R/dynsurv-package.R |only dynsurv-0.3-0/dynsurv/R/jump.R | 210 ++++++--- dynsurv-0.3-0/dynsurv/R/plot.R | 267 ++++++++---- dynsurv-0.3-0/dynsurv/R/print.R | 90 ++-- dynsurv-0.3-0/dynsurv/R/splineCox.R | 301 ++++++++------ dynsurv-0.3-0/dynsurv/R/survCurv.R |only dynsurv-0.3-0/dynsurv/R/tvTran.R | 301 ++++++++------ dynsurv-0.3-0/dynsurv/inst |only dynsurv-0.3-0/dynsurv/man/bayesCox.Rd | 276 ++++++------- dynsurv-0.3-0/dynsurv/man/bcos.Rd | 80 +-- dynsurv-0.3-0/dynsurv/man/coef.bayesCox.Rd | 44 +- dynsurv-0.3-0/dynsurv/man/coef.splineCox.Rd | 48 +- dynsurv-0.3-0/dynsurv/man/coef.tvTran.Rd | 43 +- dynsurv-0.3-0/dynsurv/man/dynsurv.Rd |only dynsurv-0.3-0/dynsurv/man/jump.Rd |only dynsurv-0.3-0/dynsurv/man/nu.Rd |only dynsurv-0.3-0/dynsurv/man/plotCoef.Rd | 64 +-- dynsurv-0.3-0/dynsurv/man/plotJump.Rd | 42 + dynsurv-0.3-0/dynsurv/man/plotNu.Rd | 40 - dynsurv-0.3-0/dynsurv/man/plotSurv.Rd |only dynsurv-0.3-0/dynsurv/man/splineCox.Rd | 106 ++--- dynsurv-0.3-0/dynsurv/man/survCurve.Rd |only dynsurv-0.3-0/dynsurv/man/survDiff.Rd |only dynsurv-0.3-0/dynsurv/man/tooth.Rd | 105 ++-- dynsurv-0.3-0/dynsurv/man/tvTran.Rd | 97 ++-- dynsurv-0.3-0/dynsurv/src/GibbsSampler.h | 4 dynsurv-0.3-0/dynsurv/src/rng.h | 8 37 files changed, 1943 insertions(+), 1375 deletions(-)
Title: MA Birk's Functions
Description: Collection of tools to make R more convenient. Includes tools to
convert between units and dimensions of measurement and to summarize data
using statistics not available with base R.
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Diff between birk versions 2.1.0 dated 2016-03-05 and 2.1.1 dated 2016-07-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 6 +++++- R/birk.R | 2 +- R/conv_unit.R | 33 +++++++++++++++++++-------------- man/birk.Rd | 2 +- 6 files changed, 35 insertions(+), 26 deletions(-)