Title: Tools for the 'Parallel' Package
Description: Miscellaneous utilities for parallelizing large
computations. Alternative to MapReduce.
File splitting and distributed operations such as sort and aggregate.
"Software Alchemy" method for parallelizing most statistical methods,
presented in N. Matloff, Parallel Computation for Data Science,
Chapman and Hall, 2015. Includes a debugging aid.
Author: Norm Matloff <normmatloff@gmail.com> [cre,aut], with
contributions by Alex Rumbaugh <aprumbaugh@ucdavis.edu> and
Hadley Wickham <h.wickham@gmail.com>
Maintainer: Norm Matloff <normmatloff@gmail.com>
Diff between partools versions 1.1.3 dated 2015-08-01 and 1.1.5 dated 2016-07-16
partools-1.1.3/partools/R/test.R |only partools-1.1.5/partools/DESCRIPTION | 24 +- partools-1.1.5/partools/MD5 | 33 ++- partools-1.1.5/partools/NAMESPACE | 16 + partools-1.1.5/partools/R/CA.R | 51 ++--- partools-1.1.5/partools/R/Class.R |only partools-1.1.5/partools/R/DebugSnow.R | 12 - partools-1.1.5/partools/R/SnowApps.R |only partools-1.1.5/partools/R/SnowUtils.R | 182 ++++++++++++++++++-- partools-1.1.5/partools/R/Snowdoop.R | 126 +++++++++---- partools-1.1.5/partools/R/caknn.R |only partools-1.1.5/partools/inst/CITATION |only partools-1.1.5/partools/inst/doc/partools.Rnw | 226 +++++++++++++++++-------- partools-1.1.5/partools/inst/doc/partools.pdf |binary partools-1.1.5/partools/man/ca.Rd | 10 - partools-1.1.5/partools/man/caclassfit.Rd |only partools-1.1.5/partools/man/dbs.Rd | 14 + partools-1.1.5/partools/man/formrowchunks.Rd | 55 ++++-- partools-1.1.5/partools/man/parpdist.Rd |only partools-1.1.5/partools/man/snowdoop.Rd | 33 ++- partools-1.1.5/partools/vignettes/partools.Rnw | 226 +++++++++++++++++-------- 21 files changed, 733 insertions(+), 275 deletions(-)
Title: Selective Bayesian Forest Classifier
Description: An MCMC algorithm for simultaneous feature selection and classification,
and visualization of the selected features and feature interactions.
An implementation of SBFC by Krakovna, Du and Liu (2015), <http://arxiv.org/abs/1506.02371>.
Author: Viktoriya Krakovna
Maintainer: Viktoriya Krakovna <vkrakovna@gmail.com>
Diff between sbfc versions 1.0 dated 2016-07-15 and 1.0.1 dated 2016-07-16
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- build/partial.rdb |binary src/sbfc.cpp | 30 +++++++++++++++--------------- 4 files changed, 24 insertions(+), 24 deletions(-)
Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications as things
that can be generated and manipulated programmatically. Structural equation
models may be specified with reticular action model matrices or paths, linear
structural relations matrices or paths, or directly in matrix algebra. Fit
functions include full information maximum likelihood, maximum likelihood, and
weighted least squares. Example models include confirmatory factor, multiple
group, mixture distribution, categorical threshold, modern test theory,
differential equations, state space, and many others.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.6.7 dated 2016-06-22 and 2.6.8 dated 2016-07-16
OpenMx-2.6.7/OpenMx/inst/models/failing/AlgebraComputeFailing.R |only OpenMx-2.6.8/OpenMx/DESCRIPTION | 8 OpenMx-2.6.8/OpenMx/MD5 | 120 - OpenMx-2.6.8/OpenMx/R/MxCompute.R | 8 OpenMx-2.6.8/OpenMx/R/MxExpectationBA81.R | 99 OpenMx-2.6.8/OpenMx/R/MxOptions.R | 1 OpenMx-2.6.8/OpenMx/R/MxRAMModel.R | 7 OpenMx-2.6.8/OpenMx/R/MxVersion.R | 2 OpenMx-2.6.8/OpenMx/R/sysdata.rda |binary OpenMx-2.6.8/OpenMx/R/zzz.R | 3 OpenMx-2.6.8/OpenMx/inst/CITATION | 2 OpenMx-2.6.8/OpenMx/inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-b.R | 2 OpenMx-2.6.8/OpenMx/inst/models/nightly/FactorScores.R | 3 OpenMx-2.6.8/OpenMx/inst/models/nightly/RAM-3Factor-96Indicators-covdata-a.R | 6 OpenMx-2.6.8/OpenMx/inst/models/nightly/data/ex9.11.dat |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/ex9.12.dat |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/ex9.1a.dat |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/ex9.23.dat |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/faces.xxm.RData |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/hcfa.xxm.RData |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/lranslp.xxm.RData |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/mlcfa.xxm.RData |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/reisby.long.xxm.RData |only OpenMx-2.6.8/OpenMx/inst/models/nightly/data/reisby.wide.xxm.RData |only OpenMx-2.6.8/OpenMx/inst/models/nightly/ifa-cai2009.R | 2 OpenMx-2.6.8/OpenMx/inst/models/nightly/ifa-dLL.R | 4 OpenMx-2.6.8/OpenMx/inst/models/nightly/ifa-meat-2tier.R | 3 OpenMx-2.6.8/OpenMx/inst/models/nightly/mplus-ex9.1.R |only OpenMx-2.6.8/OpenMx/inst/models/nightly/mplus-ex9.11.R |only OpenMx-2.6.8/OpenMx/inst/models/nightly/mplus-ex9.12.R |only OpenMx-2.6.8/OpenMx/inst/models/nightly/mplus-ex9.23.R |only OpenMx-2.6.8/OpenMx/inst/models/nightly/thresholdModel1Factor5VariateWLS.R | 3 OpenMx-2.6.8/OpenMx/inst/models/nightly/xxm-cfars.R |only OpenMx-2.6.8/OpenMx/inst/models/nightly/xxm-faces.R |only OpenMx-2.6.8/OpenMx/inst/models/nightly/xxm-hcfa.R |only OpenMx-2.6.8/OpenMx/inst/models/nightly/xxm-lgc.R |only OpenMx-2.6.8/OpenMx/inst/models/nightly/xxm-mlcfa.R |only OpenMx-2.6.8/OpenMx/inst/models/passing/DataErrorDetection.R | 2 OpenMx-2.6.8/OpenMx/inst/models/passing/MxTryHardTest.R | 5 OpenMx-2.6.8/OpenMx/inst/models/passing/SimpleConfidenceIntervals.R | 6 OpenMx-2.6.8/OpenMx/inst/models/passing/joinErrors.R |only OpenMx-2.6.8/OpenMx/inst/models/passing/lmer-1.R | 3 OpenMx-2.6.8/OpenMx/inst/models/passing/omxMnor.R |only OpenMx-2.6.8/OpenMx/inst/models/passing/xxm-2.R |only OpenMx-2.6.8/OpenMx/inst/models/passing/xxm-3.R |only OpenMx-2.6.8/OpenMx/inst/models/passing/xxm-4.R |only OpenMx-2.6.8/OpenMx/inst/tools/testModels.R | 10 OpenMx-2.6.8/OpenMx/man/mxComputeEM.Rd | 8 OpenMx-2.6.8/OpenMx/man/mxExpectationBA81.Rd | 99 OpenMx-2.6.8/OpenMx/man/mxOption.Rd | 6 OpenMx-2.6.8/OpenMx/src/AlgebraFunctions.h | 237 - OpenMx-2.6.8/OpenMx/src/Compute.h | 34 OpenMx-2.6.8/OpenMx/src/Connectedness.h |only OpenMx-2.6.8/OpenMx/src/Makevars.in | 2 OpenMx-2.6.8/OpenMx/src/Makevars.win | 2 OpenMx-2.6.8/OpenMx/src/RAMInternal.h | 7 OpenMx-2.6.8/OpenMx/src/autodep | 300 +- OpenMx-2.6.8/OpenMx/src/ba81quad.cpp | 657 +++-- OpenMx-2.6.8/OpenMx/src/ba81quad.h | 1188 +++++++--- OpenMx-2.6.8/OpenMx/src/glue.cpp | 28 OpenMx-2.6.8/OpenMx/src/omxData.cpp | 65 OpenMx-2.6.8/OpenMx/src/omxData.h | 11 OpenMx-2.6.8/OpenMx/src/omxExpectation.cpp | 5 OpenMx-2.6.8/OpenMx/src/omxExpectationBA81.cpp | 329 -- OpenMx-2.6.8/OpenMx/src/omxExpectationBA81.h | 53 OpenMx-2.6.8/OpenMx/src/omxFIMLFitFunction.cpp | 29 OpenMx-2.6.8/OpenMx/src/omxFIMLFitFunction.h | 14 OpenMx-2.6.8/OpenMx/src/omxFIMLSingleIteration.cpp | 118 OpenMx-2.6.8/OpenMx/src/omxFitFunctionBA81.cpp | 833 ++----- OpenMx-2.6.8/OpenMx/src/omxMatrix.h | 5 OpenMx-2.6.8/OpenMx/src/omxRAMExpectation.cpp | 53 OpenMx-2.6.8/OpenMx/src/omxSadmvnWrapper.h | 259 ++ OpenMx-2.6.8/OpenMx/src/omxState.h | 11 OpenMx-2.6.8/OpenMx/src/subnp.cpp | 2 74 files changed, 2653 insertions(+), 2001 deletions(-)
Title: Object-Oriented Implementation of CRM Designs
Description: Implements a wide range of model-based dose
escalation designs, ranging from classical and modern continual
reassessment methods (CRMs) based on dose-limiting toxicity endpoints to
dual-endpoint designs taking into account a biomarker/efficacy outcome. The
focus is on Bayesian inference, making it very easy to setup a new design
with its own JAGS code. However, it is also possible to implement 3+3
designs for comparison or models with non-Bayesian estimation. The whole
package is written in a modular form in the S4 class system, making it very
flexible for adaptation to new models, escalation or stopping rules.
Author: Daniel Sabanes Bove <sabanesd@roche.com>,
Wai Yin Yeung <winnie.yeung@roche.com>,
Giuseppe Palermo <giuseppe.palermo@roche.com>,
Thomas Jaki <jaki.thomas@gmail.com>
Maintainer: Daniel Sabanes Bove <sabanesd@roche.com>
Diff between crmPack versions 0.1.9 dated 2016-02-29 and 0.2.0 dated 2016-07-16
crmPack |only 1 file changed
Title: R Bindings for the Discourse Network Analyzer
Description: Control the Java software Discourse Network Analyzer (DNA) from
within R. Network matrices, statement frequency time series and attributes
of actors can be transferred directly into R.
Author: Philip Leifeld
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between rDNA versions 1.30.1 dated 2013-09-27 and 1.31 dated 2016-07-16
rDNA |only 1 file changed
Title: Interface to the 'HDF5' Library
Description: S4 Interface to the 'HDF5' library supporting fast storage and
retrieval of R-objects like vectors, matrices and arrays to binary files in
a language independent format. The 'HDF5' format can therefore be used as
an alternative to R's save/load mechanism. Since h5 is able to access only
subsets of stored data it can also handle data sets which do not fit into
memory.
Author: Mario Annau [aut, cre]
Maintainer: Mario Annau <mario.annau@gmail.com>
Diff between h5 versions 0.9.7 dated 2016-05-11 and 0.9.8 dated 2016-07-16
h5-0.9.7/h5/DESCRIPTION |only h5-0.9.7/h5/INSTALL |only h5-0.9.7/h5/LICENSE |only h5-0.9.7/h5/MD5 |only h5-0.9.7/h5/NAMESPACE |only h5-0.9.7/h5/R |only h5-0.9.7/h5/build |only h5-0.9.7/h5/cleanup |only h5-0.9.7/h5/configure |only h5-0.9.7/h5/configure.ac |only h5-0.9.7/h5/configure.win |only h5-0.9.7/h5/inst/doc |only h5-0.9.7/h5/inst/include |only h5-0.9.7/h5/inst/test-ascii-length-bug.h5 |only h5-0.9.7/h5/inst/test-f32.py |only h5-0.9.7/h5/inst/test-h5link.h5 |only h5-0.9.7/h5/inst/test-h5link.py |only h5-0.9.7/h5/man |only h5-0.9.7/h5/src |only h5-0.9.7/h5/tests |only h5-0.9.7/h5/vignettes |only h5-0.9.8/h5/inst/COPYRIGHTS | 49 ------------------------------ 22 files changed, 1 insertion(+), 48 deletions(-)
Title: Multivariate Regression Models for Reserving
Description: Non-life runoff reserves may be analyzed using linear models. This generalizes the special cases of multiplicative chain ladder and
the additive model. In addition, the package provides visual and statistical diagnostics to assess the quality of modeled link ratios.
Author: Brian A. Fannin
Maintainer: Brian A. Fannin <FanninQED@Yahoo.com>
Diff between MRMR versions 0.1.3 dated 2013-09-27 and 0.1.4 dated 2016-07-16
DESCRIPTION | 32 +- MD5 | 124 +++++----- NAMESPACE | 121 +++++++--- NEWS | 19 + R/CompleteTriangle.R | 46 +-- R/CreateDevelopmentLags.R | 157 +++++-------- R/CreateEvaluationDates.R | 64 ++--- R/CreateOriginPeriods.R | 263 +++++++++++----------- R/GetTriangleData.R | 119 +++++----- R/Help.R | 52 ++-- R/LatestDiagonal.R | 62 ++--- R/PlotModelFactors.R | 109 ++++----- R/PlotModelGoF.R | 70 +++-- R/PlotResiduals.R | 165 +++++++------ R/PlotTriangle.R | 89 ++++--- R/PlotTriangleModel.R | 30 +- R/ProjectToDate.R | 92 ++++--- R/ProjectToDev.R | 55 ++-- R/ProjectValues.R | 94 ++++--- R/SerialCorrelation.R | 112 +++++---- R/SummaryTriangleModel.R | 40 +-- R/Triangle.R | 389 ++++++++++++++++----------------- R/TriangleAdjustMeasures.R | 336 ++++++++++++++-------------- R/TriangleMeta.R | 74 +++--- R/TriangleModel.R | 274 +++++++++++------------ R/TriangleProjection.R | 155 ++++++------- R/data.R | 46 +-- README.md | 10 demo/00Index | 2 demo/Friedland.R | 108 ++++----- inst/tests/test-TriangleConstruction.R | 118 +++++----- man/CompleteTriangle.Rd | 37 +-- man/CreateCumulative.Rd | 51 ++-- man/CreateDevelopmentLags.Rd | 117 +++------ man/CreateEvaluationDates.Rd | 70 ++--- man/CreateIncrementals.Rd | 51 ++-- man/CreateOriginPeriods.Rd | 144 +++++------- man/CreatePriors.Rd | 51 ++-- man/FitSerialCorrelation.Rd | 28 +- man/FormMeasureNames.Rd | 34 +- man/Friedland.Rd | 26 +- man/GetStochasticColumnNames.Rd | 36 +-- man/GetTriangleData.Rd | 56 ++-- man/LatestDiagonal.Rd | 43 +-- man/MRMR.Rd | 60 ++--- man/Mack.Rd | 19 - man/Multiline.Rd | 26 +- man/PlotModelFactors.Rd | 41 +-- man/PlotModelGoF.Rd | 43 +-- man/PlotResiduals.Rd | 40 +-- man/ProjectToDate.Rd | 43 +-- man/Triangle-class.Rd | 37 +-- man/TriangleModel-class.Rd | 30 +- man/TriangleProjection-class.Rd | 23 + man/TriangleProjection.Rd | 47 +-- man/is.Triangle.Rd | 34 +- man/newTriangle.Rd | 116 ++++----- man/newTriangleModel.Rd | 60 ++--- man/plotSerialCorrelation.Rd | 28 +- man/plotTriangle.Rd | 54 ++-- man/plotTriangleModel.Rd | 41 +-- man/summaryTriangleModel.Rd | 41 +-- tests/test-all.R | 8 63 files changed, 2526 insertions(+), 2436 deletions(-)
Title: Embedded JavaScript Engine for R
Description: An R interface to Google's open source JavaScript engine.
V8 is written in C++ and implements ECMAScript as specified in ECMA-262,
5th edition. In addition, this package implements typed arrays as
specified in ECMA 6 used for high-performance computing and libraries
compiled with 'emscripten'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between V8 versions 1.0.3 dated 2016-06-28 and 1.1 dated 2016-07-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ build/vignette.rds |binary src/V8.cpp | 20 ++++---------------- 5 files changed, 14 insertions(+), 23 deletions(-)
Title: Tools for Autoregressive Conditional Duration Models
Description: Package for Autoregressive Conditional Duration (ACD, Engle and Russell, 1998) models. Creates trade, price or volume durations from transactions (tic) data, performs diurnal adjustments, fits various ACD models and tests them.
Author: Markus Belfrage
Maintainer: Markus Belfrage <markus.belfrage@gmail.com>
Diff between ACDm versions 1.0.3 dated 2015-12-03 and 1.0.4 dated 2016-07-16
ACDm-1.0.3/ACDm/DESCRIPTION |only ACDm-1.0.3/ACDm/MD5 |only ACDm-1.0.3/ACDm/NAMESPACE |only ACDm-1.0.3/ACDm/R |only ACDm-1.0.3/ACDm/data |only ACDm-1.0.3/ACDm/man |only ACDm-1.0.3/ACDm/src |only ACDm-1.0.4/ACDm/inst/NEWS.Rd | 14 +++++++++++++- ACDm-1.0.4/ACDm/inst/doc/tutorial.pdf |binary 9 files changed, 13 insertions(+), 1 deletion(-)
Title: Questionnaires Validation Module
Description: Implement a multivariate analysis interface for questionnaire validation of Likert-type scale variables.
Author: Nery Sofia Huerta-Pacheco, Purificacion Vicente-Galindo, Mercedes Sanchez Barba, Maria Purificacion Galindo Villardon
Maintainer: Nery Sofia Huerta-Pacheco <nehuerta@uv.mx>
Diff between QVM versions 0.1.0 dated 2016-06-30 and 0.1.1 dated 2016-07-16
DESCRIPTION | 11 +-- MD5 | 8 +- NAMESPACE | 1 R/QVM.R | 182 +++++++++++++++++++++++++++++++++--------------------------- man/QVM.Rd | 7 +- 5 files changed, 116 insertions(+), 93 deletions(-)
Title: Multilocus Random Mixed Linear Model for Genome-Wide Association
Study and Linkage Analysis
Description: Conduct multi-locus random-SNP-effect mixed linear model analysis for genome-wide association study and linkage analysis. First, each position (or marker) on the genome is scanned using random-SNP-effect mixed linear model method. Then, all the markers (or putative QTL) selected from the first step are included in the multi-locus model and their effects are estimated by an EM empirical Bayes method. Bonferroni correction is replaced by a less stringent selection criterion for significance test.
Author: Wenlong Ren,Yuanli Ni Shibo Wang,Bo Huang and Yuanming Zhang
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
Diff between mrMLM versions 1.2 dated 2016-04-07 and 1.3 dated 2016-07-16
mrMLM-1.2/mrMLM/inst/extdata/Hapmap_Genotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/Hapmap_Kinship.csv |only mrMLM-1.2/mrMLM/inst/extdata/Hapmap_Phenotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/Hapmap_Population_Structure.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Character_Genotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Character_Kinship.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Character_Phenotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Character_Population_Structure.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Numeric_Genotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Numeric_Kinship.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Numeric_Phenotype.csv |only mrMLM-1.2/mrMLM/inst/extdata/mrMLM_Numeric_Population_Structure.csv |only mrMLM-1.3/mrMLM/DESCRIPTION | 18 mrMLM-1.3/mrMLM/MD5 | 35 mrMLM-1.3/mrMLM/NAMESPACE | 10 mrMLM-1.3/mrMLM/R/mrMLM.R | 8319 ++++++++-- mrMLM-1.3/mrMLM/inst/doc/Instruction.pdf |binary mrMLM-1.3/mrMLM/inst/doc/Instruction1.pdf |only mrMLM-1.3/mrMLM/inst/extdata/GCIM_Cov.csv |only mrMLM-1.3/mrMLM/inst/extdata/GCIM_Genotype_Format.csv |only mrMLM-1.3/mrMLM/inst/extdata/GCIM_Linkage_Map.csv |only mrMLM-1.3/mrMLM/inst/extdata/GCIM_Phenotype_Format.csv |only mrMLM-1.3/mrMLM/inst/extdata/GWAS_Hapmap_Genotype.csv |only mrMLM-1.3/mrMLM/inst/extdata/GWAS_Kinship.csv |only mrMLM-1.3/mrMLM/inst/extdata/GWAS_Phenotype.csv |only mrMLM-1.3/mrMLM/inst/extdata/GWAS_Population_Structure.csv |only mrMLM-1.3/mrMLM/inst/extdata/GWAS_mrMLM_Character_Genotype.csv |only mrMLM-1.3/mrMLM/inst/extdata/GWAS_mrMLM_Numeric_Genotype.csv |only mrMLM-1.3/mrMLM/inst/extdata/WheatDH_QTLIciMapping_Format.xlsx |only mrMLM-1.3/mrMLM/inst/extdata/env1-jun3_WinQTLCart_Format.mcd |only mrMLM-1.3/mrMLM/man/mrMLM-package.Rd | 25 31 files changed, 7247 insertions(+), 1160 deletions(-)
Title: Create Graph Diagrams and Flowcharts Using R
Description: Create graph diagrams and flowcharts using R.
Author: Knut Sveidqvist [aut, cph] (mermaid.js library in htmlwidgets/lib,
http://github.com/knsv/mermaid/),
Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Chris Pettitt [aut, cph] (dagre-d3.js library in htmlwidgets/lib,
http://github.com/cpettitt/dagre-d3),
Mike Daines [aut, cph] (viz.js library in htmlwidgets/lib,
http://github.com/mdaines/viz.js/),
Andrei Kashcha [aut, cph] (vivagraphjs library in htmlwidgets/lib,
https://github.com/anvaka/VivaGraphJS),
Richard Iannone [aut, cre] (R interface)
Maintainer: Richard Iannone <riannone@me.com>
Diff between DiagrammeR versions 0.8.2 dated 2016-02-01 and 0.8.3 dated 2016-07-16
DiagrammeR-0.8.2/DiagrammeR/R/add_edges_from_csv.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_edges_from_df.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_n_nodes_from_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_n_nodes_to_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_nodes_from_csv.R |only DiagrammeR-0.8.2/DiagrammeR/R/add_nodes_from_df.R |only DiagrammeR-0.8.2/DiagrammeR/R/create_subgraph_from_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/delete_edges_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/delete_nodes_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_edge_attr.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_edge_attr_from_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_edge_count_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_node_attr.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_node_attr_from_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/deposit_node_count_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/get_global_graph_attr.R |only DiagrammeR-0.8.2/DiagrammeR/R/rescale_edge_attr_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/rescale_node_attr_in_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/set_edge_attr.R |only DiagrammeR-0.8.2/DiagrammeR/R/set_edge_attr_with_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/set_global_graph_attr.R |only DiagrammeR-0.8.2/DiagrammeR/R/set_node_attr.R |only DiagrammeR-0.8.2/DiagrammeR/R/set_node_attr_with_selection.R |only DiagrammeR-0.8.2/DiagrammeR/R/withdraw_values.R |only DiagrammeR-0.8.2/DiagrammeR/inst/htmlwidgets/graph_object.html |only DiagrammeR-0.8.2/DiagrammeR/inst/img/header_edge_attributes.png |only DiagrammeR-0.8.2/DiagrammeR/inst/img/header_node_attributes.png |only DiagrammeR-0.8.2/DiagrammeR/man/add_edges_from_csv.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/add_edges_from_df.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/add_n_nodes_from_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/add_n_nodes_to_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/add_nodes_from_csv.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/add_nodes_from_df.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/create_subgraph_from_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/delete_edges_in_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/delete_nodes_in_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/deposit_edge_attr.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/deposit_edge_attr_from_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/deposit_edge_count_in_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/deposit_node_attr.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/deposit_node_attr_from_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/deposit_node_count_in_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/get_global_graph_attr.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/rescale_edge_attr_in_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/rescale_node_attr_in_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/set_edge_attr.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/set_edge_attr_with_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/set_global_graph_attr.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/set_node_attr.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/set_node_attr_with_selection.Rd |only DiagrammeR-0.8.2/DiagrammeR/man/withdraw_values.Rd |only DiagrammeR-0.8.3/DiagrammeR/DESCRIPTION | 17 DiagrammeR-0.8.3/DiagrammeR/LICENSE | 2 DiagrammeR-0.8.3/DiagrammeR/MD5 | 486 +++-- DiagrammeR-0.8.3/DiagrammeR/NAMESPACE | 95 - DiagrammeR-0.8.3/DiagrammeR/R/DiagrammeR.R | 2 DiagrammeR-0.8.3/DiagrammeR/R/add_balanced_tree.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_cycle.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_edge.R | 186 +- DiagrammeR-0.8.3/DiagrammeR/R/add_edge_df.R | 111 - DiagrammeR-0.8.3/DiagrammeR/R/add_edges_from_table.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_edges_w_string.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_n_nodes.R | 68 DiagrammeR-0.8.3/DiagrammeR/R/add_n_nodes_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_node.R | 299 +-- DiagrammeR-0.8.3/DiagrammeR/R/add_node_df.R | 127 - DiagrammeR-0.8.3/DiagrammeR/R/add_nodes_from_table.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_path.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_prism.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_star.R |only DiagrammeR-0.8.3/DiagrammeR/R/add_to_series.R | 135 - DiagrammeR-0.8.3/DiagrammeR/R/cache_edge_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/cache_edge_attrs_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/cache_edge_count_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/cache_node_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/cache_node_attrs_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/cache_node_count_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/clear_selection.R | 43 DiagrammeR-0.8.3/DiagrammeR/R/combine_edges.R | 129 - DiagrammeR-0.8.3/DiagrammeR/R/combine_graphs.R | 120 - DiagrammeR-0.8.3/DiagrammeR/R/combine_nodes.R | 136 - DiagrammeR-0.8.3/DiagrammeR/R/country_graph.R | 138 - DiagrammeR-0.8.3/DiagrammeR/R/create_edges.R | 150 + DiagrammeR-0.8.3/DiagrammeR/R/create_graph.R | 816 +++++---- DiagrammeR-0.8.3/DiagrammeR/R/create_nodes.R | 125 - DiagrammeR-0.8.3/DiagrammeR/R/create_random_graph.R | 167 + DiagrammeR-0.8.3/DiagrammeR/R/create_series.R | 79 DiagrammeR-0.8.3/DiagrammeR/R/create_subgraph_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/delete_edge.R | 150 + DiagrammeR-0.8.3/DiagrammeR/R/delete_edges_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/delete_node.R | 154 - DiagrammeR-0.8.3/DiagrammeR/R/delete_nodes_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/do_dfs.R |only DiagrammeR-0.8.3/DiagrammeR/R/edge_count.R | 123 - DiagrammeR-0.8.3/DiagrammeR/R/edge_info.R | 36 DiagrammeR-0.8.3/DiagrammeR/R/edge_present.R | 100 - DiagrammeR-0.8.3/DiagrammeR/R/edge_rel.R | 196 +- DiagrammeR-0.8.3/DiagrammeR/R/export_csv.R |only DiagrammeR-0.8.3/DiagrammeR/R/export_graph.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_all_connected_nodes.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_articulation_points.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_betweenness.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_bridging.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_cache.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_closeness.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_common_nbrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_connected_components.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_constraint.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_degree_histogram.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_eccentricity.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_edge_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_edge_df.R | 44 DiagrammeR-0.8.3/DiagrammeR/R/get_edges.R | 150 - DiagrammeR-0.8.3/DiagrammeR/R/get_global_graph_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_graph_diameter.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_graph_from_series.R | 71 DiagrammeR-0.8.3/DiagrammeR/R/get_graph_name.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_graph_time.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_nbrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_node_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_node_df.R | 49 DiagrammeR-0.8.3/DiagrammeR/R/get_nodes.R | 96 - DiagrammeR-0.8.3/DiagrammeR/R/get_non_nbrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_paths.R | 315 ++- DiagrammeR-0.8.3/DiagrammeR/R/get_periphery.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_predecessors.R | 62 DiagrammeR-0.8.3/DiagrammeR/R/get_s_connected_components.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_selection.R | 72 DiagrammeR-0.8.3/DiagrammeR/R/get_similar_nbrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/get_successors.R | 60 DiagrammeR-0.8.3/DiagrammeR/R/grViz.R | 6 DiagrammeR-0.8.3/DiagrammeR/R/graph_count.R | 67 DiagrammeR-0.8.3/DiagrammeR/R/graph_info.R |only DiagrammeR-0.8.3/DiagrammeR/R/image_icon.R | 17 DiagrammeR-0.8.3/DiagrammeR/R/import_graph.R | 375 +++- DiagrammeR-0.8.3/DiagrammeR/R/invert_selection.R | 71 DiagrammeR-0.8.3/DiagrammeR/R/is_graph_connected.R |only DiagrammeR-0.8.3/DiagrammeR/R/is_graph_directed.R | 35 DiagrammeR-0.8.3/DiagrammeR/R/is_graph_empty.R | 31 DiagrammeR-0.8.3/DiagrammeR/R/join_edge_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/join_node_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/mermaid.R | 1 DiagrammeR-0.8.3/DiagrammeR/R/node_count.R | 109 - DiagrammeR-0.8.3/DiagrammeR/R/node_info.R | 247 +- DiagrammeR-0.8.3/DiagrammeR/R/node_present.R | 73 DiagrammeR-0.8.3/DiagrammeR/R/node_type.R | 177 +- DiagrammeR-0.8.3/DiagrammeR/R/remove_from_series.R | 97 - DiagrammeR-0.8.3/DiagrammeR/R/render_graph.R | 162 - DiagrammeR-0.8.3/DiagrammeR/R/render_graph_from_series.R | 98 - DiagrammeR-0.8.3/DiagrammeR/R/rescale_edge_attrs_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/rescale_node_attrs_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/reverse_edge_direction.R |only DiagrammeR-0.8.3/DiagrammeR/R/select_edges.R | 249 ++ DiagrammeR-0.8.3/DiagrammeR/R/select_edges_by_node_id.R | 101 - DiagrammeR-0.8.3/DiagrammeR/R/select_last_edge.R | 52 DiagrammeR-0.8.3/DiagrammeR/R/select_last_node.R | 37 DiagrammeR-0.8.3/DiagrammeR/R/select_nodes.R | 180 +- DiagrammeR-0.8.3/DiagrammeR/R/select_nodes_by_degree.R | 515 +++-- DiagrammeR-0.8.3/DiagrammeR/R/select_nodes_by_id.R | 77 DiagrammeR-0.8.3/DiagrammeR/R/select_nodes_in_neighborhood.R | 225 +- DiagrammeR-0.8.3/DiagrammeR/R/series_info.R | 131 - DiagrammeR-0.8.3/DiagrammeR/R/set_edge_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/set_edge_attrs_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/set_global_graph_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/set_graph_name.R | 35 DiagrammeR-0.8.3/DiagrammeR/R/set_graph_time.R | 70 DiagrammeR-0.8.3/DiagrammeR/R/set_graph_undirected.R |only DiagrammeR-0.8.3/DiagrammeR/R/set_node_attrs.R |only DiagrammeR-0.8.3/DiagrammeR/R/set_node_attrs_ws.R |only DiagrammeR-0.8.3/DiagrammeR/R/spectools.R | 2 DiagrammeR-0.8.3/DiagrammeR/R/subset_series.R | 157 + DiagrammeR-0.8.3/DiagrammeR/R/to_igraph.R |only DiagrammeR-0.8.3/DiagrammeR/R/trav_both.R | 230 +- DiagrammeR-0.8.3/DiagrammeR/R/trav_in.R | 185 +- DiagrammeR-0.8.3/DiagrammeR/R/trav_in_edge.R | 198 +- DiagrammeR-0.8.3/DiagrammeR/R/trav_in_node.R | 157 + DiagrammeR-0.8.3/DiagrammeR/R/trav_out.R | 167 + DiagrammeR-0.8.3/DiagrammeR/R/trav_out_edge.R | 208 +- DiagrammeR-0.8.3/DiagrammeR/R/trav_out_node.R | 156 + DiagrammeR-0.8.3/DiagrammeR/R/x11_hex.R | 464 +++-- DiagrammeR-0.8.3/DiagrammeR/README.md | 218 +- DiagrammeR-0.8.3/DiagrammeR/inst/htmlwidgets/lib/mermaid/dist/mermaid.css | 36 DiagrammeR-0.8.3/DiagrammeR/inst/htmlwidgets/lib/mermaid/dist/mermaid.slim.min.js | 22 DiagrammeR-0.8.3/DiagrammeR/inst/htmlwidgets/lib/viz/viz.js | 10 DiagrammeR-0.8.3/DiagrammeR/inst/img/graph_functions_2.png |binary DiagrammeR-0.8.3/DiagrammeR/inst/img/graph_functions_3.png |binary DiagrammeR-0.8.3/DiagrammeR/inst/img/graph_functions_5.png |binary DiagrammeR-0.8.3/DiagrammeR/inst/img/graph_functions_6.png |binary DiagrammeR-0.8.3/DiagrammeR/inst/img/graph_functions_7.png |binary DiagrammeR-0.8.3/DiagrammeR/man/DiagrammeR.Rd | 1 DiagrammeR-0.8.3/DiagrammeR/man/add_balanced_tree.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_cycle.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_edge.Rd | 41 DiagrammeR-0.8.3/DiagrammeR/man/add_edge_df.Rd | 36 DiagrammeR-0.8.3/DiagrammeR/man/add_edges_from_table.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_edges_w_string.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_n_nodes.Rd | 29 DiagrammeR-0.8.3/DiagrammeR/man/add_n_nodes_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_node.Rd | 32 DiagrammeR-0.8.3/DiagrammeR/man/add_node_df.Rd | 52 DiagrammeR-0.8.3/DiagrammeR/man/add_nodes_from_table.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_path.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_prism.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_star.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/add_to_series.Rd | 68 DiagrammeR-0.8.3/DiagrammeR/man/cache_edge_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/cache_edge_attrs_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/cache_edge_count_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/cache_node_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/cache_node_attrs_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/cache_node_count_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/clear_selection.Rd | 39 DiagrammeR-0.8.3/DiagrammeR/man/combine_edges.Rd | 40 DiagrammeR-0.8.3/DiagrammeR/man/combine_graphs.Rd | 23 DiagrammeR-0.8.3/DiagrammeR/man/combine_nodes.Rd | 51 DiagrammeR-0.8.3/DiagrammeR/man/country_graph.Rd | 13 DiagrammeR-0.8.3/DiagrammeR/man/create_edges.Rd | 80 DiagrammeR-0.8.3/DiagrammeR/man/create_graph.Rd | 152 + DiagrammeR-0.8.3/DiagrammeR/man/create_nodes.Rd | 47 DiagrammeR-0.8.3/DiagrammeR/man/create_random_graph.Rd | 68 DiagrammeR-0.8.3/DiagrammeR/man/create_series.Rd | 74 DiagrammeR-0.8.3/DiagrammeR/man/create_subgraph_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/delete_edge.Rd | 30 DiagrammeR-0.8.3/DiagrammeR/man/delete_edges_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/delete_node.Rd | 13 DiagrammeR-0.8.3/DiagrammeR/man/delete_nodes_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/do_dfs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/edge_count.Rd | 67 DiagrammeR-0.8.3/DiagrammeR/man/edge_info.Rd | 36 DiagrammeR-0.8.3/DiagrammeR/man/edge_present.Rd | 59 DiagrammeR-0.8.3/DiagrammeR/man/edge_rel.Rd | 100 - DiagrammeR-0.8.3/DiagrammeR/man/export_csv.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/export_graph.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_all_connected_nodes.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_articulation_points.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_betweenness.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_bridging.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_cache.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_closeness.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_common_nbrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_connected_components.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_constraint.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_degree_histogram.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_eccentricity.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_edge_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_edge_df.Rd | 39 DiagrammeR-0.8.3/DiagrammeR/man/get_edges.Rd | 108 - DiagrammeR-0.8.3/DiagrammeR/man/get_global_graph_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_graph_diameter.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_graph_from_series.Rd | 63 DiagrammeR-0.8.3/DiagrammeR/man/get_graph_name.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_graph_time.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_nbrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_node_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_node_df.Rd | 44 DiagrammeR-0.8.3/DiagrammeR/man/get_nodes.Rd | 62 DiagrammeR-0.8.3/DiagrammeR/man/get_non_nbrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_paths.Rd | 70 DiagrammeR-0.8.3/DiagrammeR/man/get_periphery.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_predecessors.Rd | 41 DiagrammeR-0.8.3/DiagrammeR/man/get_s_connected_components.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_selection.Rd | 44 DiagrammeR-0.8.3/DiagrammeR/man/get_similar_nbrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/get_successors.Rd | 41 DiagrammeR-0.8.3/DiagrammeR/man/graph_count.Rd | 58 DiagrammeR-0.8.3/DiagrammeR/man/graph_info.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/image_icon.Rd | 3 DiagrammeR-0.8.3/DiagrammeR/man/import_graph.Rd | 83 DiagrammeR-0.8.3/DiagrammeR/man/invert_selection.Rd | 39 DiagrammeR-0.8.3/DiagrammeR/man/is_graph_connected.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/is_graph_directed.Rd | 30 DiagrammeR-0.8.3/DiagrammeR/man/is_graph_empty.Rd | 26 DiagrammeR-0.8.3/DiagrammeR/man/join_edge_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/join_node_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/mermaid.Rd | 1 DiagrammeR-0.8.3/DiagrammeR/man/node_count.Rd | 53 DiagrammeR-0.8.3/DiagrammeR/man/node_info.Rd | 72 DiagrammeR-0.8.3/DiagrammeR/man/node_present.Rd | 55 DiagrammeR-0.8.3/DiagrammeR/man/node_type.Rd | 95 - DiagrammeR-0.8.3/DiagrammeR/man/remove_from_series.Rd | 86 DiagrammeR-0.8.3/DiagrammeR/man/render_graph.Rd | 83 DiagrammeR-0.8.3/DiagrammeR/man/render_graph_from_series.Rd | 79 DiagrammeR-0.8.3/DiagrammeR/man/replace_in_spec.Rd | 2 DiagrammeR-0.8.3/DiagrammeR/man/rescale_edge_attrs_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/rescale_node_attrs_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/reverse_edge_direction.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/select_edges.Rd | 136 + DiagrammeR-0.8.3/DiagrammeR/man/select_edges_by_node_id.Rd | 88 - DiagrammeR-0.8.3/DiagrammeR/man/select_last_edge.Rd | 43 DiagrammeR-0.8.3/DiagrammeR/man/select_last_node.Rd | 31 DiagrammeR-0.8.3/DiagrammeR/man/select_nodes.Rd | 110 - DiagrammeR-0.8.3/DiagrammeR/man/select_nodes_by_degree.Rd | 127 + DiagrammeR-0.8.3/DiagrammeR/man/select_nodes_by_id.Rd | 43 DiagrammeR-0.8.3/DiagrammeR/man/select_nodes_in_neighborhood.Rd | 125 - DiagrammeR-0.8.3/DiagrammeR/man/series_info.Rd | 65 DiagrammeR-0.8.3/DiagrammeR/man/set_edge_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/set_edge_attrs_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/set_global_graph_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/set_graph_name.Rd | 10 DiagrammeR-0.8.3/DiagrammeR/man/set_graph_time.Rd | 33 DiagrammeR-0.8.3/DiagrammeR/man/set_graph_undirected.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/set_node_attrs.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/set_node_attrs_ws.Rd |only DiagrammeR-0.8.3/DiagrammeR/man/subset_series.Rd | 123 - 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Title: Plot a Correlogram
Description: Calculates correlation of variables and displays the results
graphically. Included panel functions can display points, shading, ellipses, and
correlation values with confidence intervals.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between corrgram versions 1.8 dated 2015-07-03 and 1.9 dated 2016-07-16
corrgram-1.8/corrgram/R/corrgram.r |only corrgram-1.8/corrgram/data/auto.rda |only corrgram-1.8/corrgram/data/baseball.rda |only corrgram-1.8/corrgram/data/vote.rda |only corrgram-1.8/corrgram/inst/doc/corrgram_examples.Rnw |only corrgram-1.8/corrgram/inst/doc/corrgram_examples.pdf |only corrgram-1.8/corrgram/tests/friendly.r |only corrgram-1.8/corrgram/tests/misc.r |only corrgram-1.8/corrgram/tests/shade.r |only corrgram-1.8/corrgram/tests/spearman.r |only corrgram-1.8/corrgram/vignettes/corrgram_examples.Rnw |only corrgram-1.9/corrgram/DESCRIPTION | 19 + corrgram-1.9/corrgram/MD5 | 42 ++-- corrgram-1.9/corrgram/NAMESPACE | 12 - corrgram-1.9/corrgram/NEWS | 4 corrgram-1.9/corrgram/R/corrgram.R |only corrgram-1.9/corrgram/R/data.R |only corrgram-1.9/corrgram/build/vignette.rds |binary corrgram-1.9/corrgram/data/auto.R |only corrgram-1.9/corrgram/data/baseball.R |only corrgram-1.9/corrgram/data/vote.r |only corrgram-1.9/corrgram/inst/doc/corrgram_examples.R | 39 +++ corrgram-1.9/corrgram/inst/doc/corrgram_examples.Rmd |only corrgram-1.9/corrgram/inst/doc/corrgram_examples.html |only corrgram-1.9/corrgram/man/auto.Rd | 74 +++---- corrgram-1.9/corrgram/man/baseball.Rd | 116 +++++------ corrgram-1.9/corrgram/man/corrgram.Rd | 176 +++++++++--------- corrgram-1.9/corrgram/man/vote.Rd | 35 +-- corrgram-1.9/corrgram/tests/friendly.R |only corrgram-1.9/corrgram/tests/misc.R |only corrgram-1.9/corrgram/tests/shade.R |only corrgram-1.9/corrgram/tests/spearman.R |only corrgram-1.9/corrgram/vignettes/corrgram.bib |only corrgram-1.9/corrgram/vignettes/corrgram_examples.Rmd |only 34 files changed, 266 insertions(+), 251 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from
Liang et al (2008)
<http://dx.doi.org/10.1198/016214507000001337>
for linear models or mixtures of
g-priors in GLMs of Li and Clyde (2015)
<http://arxiv.org/abs/1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient
hash table. Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <http://dx.doi.org/10.1198/jcgs.2010.09049>.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.2.2 dated 2016-06-30 and 1.3.0 dated 2016-07-16
CHANGELOG | 11 +- DESCRIPTION | 11 +- MD5 | 46 +++++---- NAMESPACE | 10 +- R/bas.R | 5 - R/coefficients.R | 40 ++++---- R/confint.coef.R |only R/plot.bma.R | 2 R/predict.bma.R | 221 +++++++++++++++++++++++++++++++++++++---------- R/update.bma.R | 2 build |only demo/BAS.hald.R | 4 inst/CITATION | 1 inst/doc |only man/bas.Rd | 10 +- man/coefficients.bma.Rd | 24 ++--- man/confint.Rd |only man/confint.pred.Rd |only man/cv.summary.bma.Rd | 37 +++++-- man/fitted.bma.Rd | 19 ++-- man/plot.bma.Rd | 2 man/plot.coefficients.Rd | 12 +- man/predict.bma.Rd | 55 +++++++---- man/summary.bma.Rd | 2 man/update.bma.Rd | 6 - vignettes |only 26 files changed, 358 insertions(+), 162 deletions(-)