Title: Produces Summary Tables and Exports Them to Multi-Tab
Spreadsheet Format (.xls or .xlsx)
Description: A collection of time-saving wrappers for producing and exporting
summary tables commonly used in scientific articles, to .xls/.xlsx multi-tab spreadsheets, while controlling spreadsheet layout. Powered by 'XLConnect'/'rJava' utilities.
Author: Assaf P. Oron
Maintainer: Assaf P. Oron <assaf.oron@seattlechildrens.org>
Diff between table1xls versions 0.3.1 dated 2014-06-13 and 0.3.2 dated 2016-07-18
table1xls-0.3.1/table1xls/man/XLuniVariate.Rd |only table1xls-0.3.2/table1xls/DESCRIPTION | 16 +- table1xls-0.3.2/table1xls/MD5 | 36 +++--- table1xls-0.3.2/table1xls/NAMESPACE | 12 -- table1xls-0.3.2/table1xls/NEWS | 15 ++ table1xls-0.3.2/table1xls/R/XLoneWay.r | 8 - table1xls-0.3.2/table1xls/R/exploratoryUtils.r | 56 +++++---- table1xls-0.3.2/table1xls/R/regressionSummaries.r | 10 - table1xls-0.3.2/table1xls/R/utilities.r | 10 - table1xls-0.3.2/table1xls/inst/examples/Ex2way.r | 4 table1xls-0.3.2/table1xls/inst/examples/ExRegress.r | 4 table1xls-0.3.2/table1xls/man/XLaddText.Rd | 31 +---- table1xls-0.3.2/table1xls/man/XLgeneric.Rd | 73 ++++-------- table1xls-0.3.2/table1xls/man/XLoneWay.Rd | 68 +++-------- table1xls-0.3.2/table1xls/man/XLregresSummary.Rd | 119 ++++++-------------- table1xls-0.3.2/table1xls/man/XLtwoWay.Rd | 117 ++++++------------- table1xls-0.3.2/table1xls/man/XLunivariate.Rd |only table1xls-0.3.2/table1xls/man/XLwriteOpen.Rd | 32 +---- table1xls-0.3.2/table1xls/man/rangeString.Rd | 69 +++-------- table1xls-0.3.2/table1xls/man/table1xls-package.Rd | 6 - 20 files changed, 255 insertions(+), 431 deletions(-)
Title: Relative Risk Regression Using the Log-Binomial Model
Description: Methods for fitting log-link GLMs and GAMs to binomial data,
including EM-type algorithms with more stable convergence properties than standard methods.
Author: Mark W. Donoghoe [aut, cre],
Ian C. Marschner [ths],
Alexandra C. Gillett [ctb] (wrote an initial version of the nplbin
function)
Maintainer: Mark W. Donoghoe <markdonoghoe@gmail.com>
Diff between logbin versions 2.0 dated 2016-07-18 and 2.0.1 dated 2016-07-18
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- README.md | 14 +++++++------- inst/CITATION | 2 +- man/logbin-package.Rd | 4 ++-- 5 files changed, 20 insertions(+), 20 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms.
Author: Marc Girondot <marc.girondot@u-psud.fr>
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between embryogrowth versions 6.2 dated 2016-01-08 and 6.3 dated 2016-07-18
embryogrowth-6.2/embryogrowth/R/STSRE_NestingArea.R |only embryogrowth-6.2/embryogrowth/R/STSRE_TSD.R |only embryogrowth-6.2/embryogrowth/R/fonctionMCMC.R |only embryogrowth-6.2/embryogrowth/R/web.embryogrowth.R |only embryogrowth-6.2/embryogrowth/data/STSRE_NestingArea.rda |only embryogrowth-6.2/embryogrowth/data/STSRE_TSD.rda |only embryogrowth-6.2/embryogrowth/inst |only embryogrowth-6.2/embryogrowth/man/STSRE_NestingArea.Rd |only embryogrowth-6.2/embryogrowth/man/STSRE_TSD.Rd |only embryogrowth-6.3/embryogrowth/DESCRIPTION | 8 embryogrowth-6.3/embryogrowth/MD5 | 126 +- embryogrowth-6.3/embryogrowth/NAMESPACE | 4 embryogrowth-6.3/embryogrowth/NEWS | 44 + embryogrowth-6.3/embryogrowth/R/ChangeSSM.R | 12 embryogrowth-6.3/embryogrowth/R/DatabaseNestingArea.R |only embryogrowth-6.3/embryogrowth/R/DatabaseTSD.R |only embryogrowth-6.3/embryogrowth/R/GRTRN_MHmcmc.R | 31 embryogrowth-6.3/embryogrowth/R/MovingIncubation.R | 47 - embryogrowth-6.3/embryogrowth/R/SEforR.R |only embryogrowth-6.3/embryogrowth/R/SSM.R | 214 ++-- embryogrowth-6.3/embryogrowth/R/STRN.R | 154 ++- embryogrowth-6.3/embryogrowth/R/STRN_fit.R | 11 embryogrowth-6.3/embryogrowth/R/embryogrowth-package.R | 4 embryogrowth-6.3/embryogrowth/R/fitSSM.R | 2 embryogrowth-6.3/embryogrowth/R/fonctiontsdMCMC.R | 5 embryogrowth-6.3/embryogrowth/R/hist.Nests.R | 1 embryogrowth-6.3/embryogrowth/R/info.nests.R | 259 ++++- embryogrowth-6.3/embryogrowth/R/modelTSD.R | 17 embryogrowth-6.3/embryogrowth/R/plot.NestsResult.R | 56 - embryogrowth-6.3/embryogrowth/R/plot.tsd.R | 21 embryogrowth-6.3/embryogrowth/R/plotR.R | 569 +++++++------ embryogrowth-6.3/embryogrowth/R/plotR_hist.R | 35 embryogrowth-6.3/embryogrowth/R/predict.tsd.R | 32 embryogrowth-6.3/embryogrowth/R/searchR.R | 111 +- embryogrowth-6.3/embryogrowth/R/tempConst.R | 5 embryogrowth-6.3/embryogrowth/R/tsd.R | 32 embryogrowth-6.3/embryogrowth/R/tsd_MHmcmc.R | 19 embryogrowth-6.3/embryogrowth/R/tsd_fit.R | 16 embryogrowth-6.3/embryogrowth/data/DatabaseNestingArea.rda |only embryogrowth-6.3/embryogrowth/data/DatabaseTSD.rda |only embryogrowth-6.3/embryogrowth/data/TSP.list.rda |binary embryogrowth-6.3/embryogrowth/data/stages.rda |binary embryogrowth-6.3/embryogrowth/man/ChangeSSM.Rd | 6 embryogrowth-6.3/embryogrowth/man/DatabaseNestingArea.Rd |only embryogrowth-6.3/embryogrowth/man/DatabaseTSD.Rd |only embryogrowth-6.3/embryogrowth/man/GRTRN_MHmcmc.Rd | 7 embryogrowth-6.3/embryogrowth/man/MovingIncubation.Rd | 31 embryogrowth-6.3/embryogrowth/man/SEforR.Rd |only embryogrowth-6.3/embryogrowth/man/STRN.Rd | 66 + embryogrowth-6.3/embryogrowth/man/TSP.list.Rd | 2 embryogrowth-6.3/embryogrowth/man/embryogrowth-package.Rd | 4 embryogrowth-6.3/embryogrowth/man/info.nests.Rd | 29 embryogrowth-6.3/embryogrowth/man/plot.NestsResult.Rd | 38 embryogrowth-6.3/embryogrowth/man/plot.tsd.Rd | 10 embryogrowth-6.3/embryogrowth/man/plotR.Rd | 75 + embryogrowth-6.3/embryogrowth/man/plotR_hist.Rd | 10 embryogrowth-6.3/embryogrowth/man/predict.tsd.Rd | 8 embryogrowth-6.3/embryogrowth/man/searchR.Rd | 20 embryogrowth-6.3/embryogrowth/man/stages.Rd | 2 embryogrowth-6.3/embryogrowth/man/tempConst.Rd | 5 embryogrowth-6.3/embryogrowth/man/tsd.Rd | 8 embryogrowth-6.3/embryogrowth/man/tsd_MHmcmc.Rd | 12 embryogrowth-6.3/embryogrowth/man/tsd_MHmcmc_p.Rd | 2 63 files changed, 1390 insertions(+), 780 deletions(-)
Title: Data to Support Fish Stock Assessment (FSA) Package
Description: The datasets to support the Fish Stock Assessment (FSA) package.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSAdata versions 0.3.2 dated 2015-10-22 and 0.3.3 dated 2016-07-18
DESCRIPTION | 9 - MD5 | 352 +++++++++++++++++++++++----------------------- NAMESPACE | 2 R/Bonito.R |only R/Mosquitofish.R |only R/RWhitefishAI.R | 4 R/RWhitefishIR.R | 4 R/SnapperHG2.R | 2 R/StripedBass2.R | 2 R/YPerchSB1.R | 2 R/YPerchTL.R | 4 data/Bonito.rdata |only data/Mosquitofish.rdata |only man/AHerringChile.Rd | 5 man/AfricanRivers.Rd | 3 man/AlewifeLH.Rd | 5 man/AnchovetaChile.Rd | 11 - man/BGHRfish.Rd | 3 man/BGHRsample.Rd | 3 man/BSkateGB.Rd | 3 man/BassFL.Rd | 11 - man/BlackDrum2001.Rd | 3 man/BloaterLH.Rd | 5 man/BlueCatfish.Rd | 3 man/BlueCrab.Rd | 3 man/BluefishAge.Rd | 5 man/BluegillLM.Rd | 2 man/BluntnoseIL1.Rd | 7 man/Bonito.Rd |only man/BrookTroutNC.Rd | 5 man/BrookTroutNEWP.Rd | 13 - man/BrookTroutNEWP1.Rd | 11 - man/BrookTroutOnt.Rd | 5 man/BrownTroutVC1.Rd | 3 man/BullTroutRML1.Rd | 3 man/BullTroutRML2.Rd | 11 - man/BullTroutTC.Rd | 5 man/CCatfishNB.Rd | 7 man/Cabezon.Rd | 17 +- man/Casselman1990.Rd | 9 - man/ChinookKR.Rd | 5 man/CiscoTL.Rd | 9 - man/CrappieARMS.Rd | 5 man/CreekChub.Rd | 3 man/CreelMN.Rd | 13 - man/Croaker1.Rd | 9 - man/Croaker2.Rd | 7 man/CutthroatALf.Rd | 5 man/DarterMahon.Rd | 13 - man/DarterOnt.Rd | 9 - man/Deckeretal1999.Rd | 3 man/EuroPerchTJ.Rd | 7 man/FHCatfish.Rd | 7 man/FHCatfishATL.Rd | 9 - man/FSAdata-internals.Rd | 2 man/FSAdata.Rd | 9 - man/FWDrumLE1.Rd | 7 man/FWDrumLE2.Rd | 11 - man/Ghats.Rd | 5 man/GreensCreekMine.Rd | 3 man/Hake.Rd | 9 - man/HalibutPAC.Rd | 3 man/Herman.Rd | 7 man/HerringBWE.Rd | 3 man/HerringISS.Rd | 3 man/HumpbackWFCR.Rd | 3 man/InchLake1.Rd | 11 - man/InchLake2.Rd | 5 man/JobfishSIO.Rd | 15 + man/JonesStockwell.Rd | 3 man/Jonubi1.Rd | 7 man/Jonubi2.Rd | 3 man/KingCrabAK.Rd | 3 man/LJCisco.Rd | 7 man/LMBassBL.Rd | 5 man/LMBassLCB.Rd | 5 man/LakeTroutALTER.Rd | 23 +-- man/LakeTroutEggs.Rd | 5 man/LakeTroutGIS.Rd | 3 man/LakeTroutMI.Rd | 5 man/Lizardfish.Rd | 3 man/LobsterHI.Rd | 19 +- man/LobsterPEI.Rd | 15 + man/Menhaden1.Rd | 8 - man/Morwong1.Rd | 7 man/Morwong2.Rd | 7 man/Morwong3.Rd | 5 man/Morwong4.Rd | 5 man/Morwong4a.Rd | 5 man/Mosquitofish.Rd |only man/MulletBS.Rd | 7 man/MuskieSLR.Rd | 7 man/MuskieWI06MR.Rd | 3 man/PSalmonAK.Rd | 3 man/Pallid.Rd | 17 +- man/Pathfinder.Rd | 18 +- man/PikeHL.Rd | 3 man/PikeIL.Rd | 17 +- man/PikeNYPartial2.Rd | 3 man/PikeWindermere.Rd | 4 man/PygmyWFBC.Rd | 3 man/RBSmeltErie.Rd | 9 - man/RBSmeltLM.Rd | 7 man/RBTroutKenai.Rd | 15 + man/RBTroutUNSP.Rd | 7 man/RWhitefishAI.Rd | 9 - man/RWhitefishIR.Rd | 9 - man/RedDrum.Rd | 7 man/Riffleshell.Rd | 3 man/RockBassCL.Rd | 5 man/RockBassLO1.Rd | 9 - man/RockBassLO2.Rd | 3 man/RuffeSLRH92.Rd | 13 - man/RuffeTL89.Rd | 5 man/SLampreyGL.Rd | 5 man/SalmonADP.Rd | 7 man/SalmonidsMCCA.Rd | 3 man/SardineChile.Rd | 15 + man/SardineLK.Rd | 5 man/SardinesPacific.Rd | 3 man/SculpinALTER.Rd | 7 man/ShadCR.Rd | 4 man/ShrimpGuam.Rd | 17 +- man/SimonsonLyons.Rd | 3 man/SiscowetMI2004.Rd | 3 man/Snapper.Rd | 3 man/SnapperHG1.Rd | 3 man/SnapperHG2.Rd | 7 man/SockeyeKL.Rd | 5 man/SockeyeSR.Rd | 7 man/SpotVA2.Rd | 7 man/SpottedSucker1.Rd | 5 man/StripedBass1.Rd | 9 - man/StripedBass2.Rd | 7 man/StripedBass3.Rd | 9 - man/StripedBass4.Rd | 5 man/StripedBass5.Rd | 9 - man/StripedBass6.Rd | 5 man/SturgeonBL.Rd | 5 man/SturgeonGB.Rd | 3 man/SunfishIN.Rd | 8 - man/SunfishLP.Rd | 5 man/TPrawnsEG.Rd | 6 man/TroutADP.Rd | 7 man/TroutBR.Rd | 13 - man/TroutperchLM1.Rd | 9 - man/TroutperchLM2.Rd | 7 man/TroutperchLM3.Rd | 7 man/VendaceLP.Rd | 5 man/VendaceLP2.Rd | 3 man/WShrimpGA.Rd | 3 man/WalleyeConsumption.Rd | 7 man/WalleyeEL.Rd | 3 man/WalleyeErie.Rd | 9 - man/WalleyeErie2.Rd | 7 man/WalleyeKS.Rd | 9 - man/WalleyeML.Rd | 17 +- man/WalleyeMN06a.Rd | 5 man/WalleyeMN06b.Rd | 5 man/WalleyePL.Rd | 3 man/WalleyePS.Rd | 9 - man/WalleyeRL.Rd | 19 +- man/WalleyeWad.Rd | 3 man/WalleyeWyrlng.Rd | 3 man/WhiteGrunt1.Rd | 9 - man/WhiteGrunt2.Rd | 3 man/WhitefishGSL.Rd | 13 - man/WhitefishLS.Rd | 3 man/WhitefishMB.Rd | 13 - man/WhitefishTB.Rd | 3 man/YERockfish.Rd | 15 + man/YPerchCB1.Rd | 7 man/YPerchCB2.Rd | 3 man/YPerchGB.Rd | 9 - man/YPerchGL.Rd | 3 man/YPerchRL.Rd | 7 man/YPerchSB.Rd | 3 man/YPerchSB1.Rd | 9 - man/YPerchTL.Rd | 11 - man/YTFlounder.Rd | 11 - 180 files changed, 846 insertions(+), 680 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.7 dated 2016-05-08 and 0.8.8 dated 2016-07-18
DESCRIPTION | 8 - MD5 | 20 +- NEWS.md | 5 R/growthModels.R | 65 +++++++- R/vbStarts.R | 256 +++++++++++++++++++++++------------ man/Schnute.Rd | 2 man/growthModels.Rd | 10 - man/vbStarts.Rd | 25 ++- tests/testthat/Rplots.pdf |binary tests/testthat/test_VonBertalanffy.R | 84 +++++++++++ tests/testthat/test_growthFuns.R | 4 11 files changed, 362 insertions(+), 117 deletions(-)
Title: Permutation Based Gene Expression Pathway Analysis
Description: Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).
Author: Ivo D. Shterev [aut, cre],
Kouros Owzar [aut],
Gregory D. Sempowski [aut],
Kenneth Wilder [ctb, cph] (wrote original version of ranker.h)
Maintainer: Ivo D. Shterev <i.shterev@duke.edu>
Diff between permPATH versions 0.8 dated 2016-07-13 and 0.9 dated 2016-07-18
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- inst/doc/permPATHmanual.R | 40 ++++++++++++++++++++++++++++++++++++++-- inst/doc/permPATHmanual.Rnw | 40 ++++++++++++++++++++++++++++++++++++++-- inst/doc/permPATHmanual.pdf |binary man/perm.path.Rd | 13 ++++++++----- src/permPATH.cpp | 2 +- vignettes/permPATHmanual.Rnw | 40 ++++++++++++++++++++++++++++++++++++++-- 8 files changed, 134 insertions(+), 23 deletions(-)
Title: Least-Squares Means
Description: Obtain least-squares means for many linear, generalized linear,
and mixed models. Compute contrasts or linear functions of least-squares
means, and comparisons of slopes. Plots and compact letter displays.
Author: Russell Lenth [aut, cre]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between lsmeans versions 2.23 dated 2016-03-10 and 2.23-5 dated 2016-07-18
DESCRIPTION | 11 +++--- MD5 | 31 +++++++++--------- R/cld.lsm.R | 13 +++++-- R/helpers.R | 76 +++++++++++++++++++++++++++------------------ R/lsmeans.R | 14 ++++---- R/ref.grid.R | 44 ++++++++++++++++++-------- R/summary.R | 5 ++ R/xtable-method.R | 2 - R/zzz.R |only build/vignette.rds |binary inst/NEWS | 13 +++++++ inst/doc/extending.pdf |binary inst/doc/using-lsmeans.pdf |binary man/cld.Rd | 5 +- man/ref.grid.Rd | 6 ++- man/summary.Rd | 8 ++-- tests/tests1.Rout.save | 18 +++++----- 17 files changed, 156 insertions(+), 90 deletions(-)
Title: Regression Methods for Interval-Valued Variables
Description: Contains some important regression methods for interval-valued variables. For each method, it is available the fitted values, residuals and some goodness-of-fit measures.
Author: Eufrasio de A. Lima Neto / Claudio A. V. de Souza Filho / Pedro R. D. Marinho
Maintainer: Eufrasio de A. Lima Neto <eufrasio@de.ufpb.br>
Diff between iRegression versions 1.2 dated 2012-07-26 and 1.2.1 dated 2016-07-18
DESCRIPTION | 21 - MD5 | 28 +- NAMESPACE | 105 +++++++ R/MinMax.R | 294 ++++++++++------------ R/bivar.R | 600 +++++++++++++++++++++------------------------ R/ccrm.r | 327 ++++++++++++------------ R/cm.R | 240 +++++++++--------- R/crm.R | 297 +++++++++++----------- man/Cardiological.CR.Rd | 94 +++---- man/MinMax.Rd | 136 +++++----- man/bivar.Rd | 132 ++++----- man/ccrm.Rd | 122 ++++----- man/cm.Rd | 126 ++++----- man/crm.Rd | 126 ++++----- man/iRegression-package.Rd | 98 +++---- 15 files changed, 1409 insertions(+), 1337 deletions(-)
Title: Leland Wilkinson's Algorithm for Detecting Multidimensional
Outliers
Description: An implementation of an algorithm for outlier detection that can handle a) data with a mixed categorical and continuous variables, b) many columns of data, c) many rows of data, d) outliers that mask other outliers, and e) both unidimensional and multidimensional datasets. Unlike ad hoc methods found in many machine learning papers, HDoutliers is based on a distributional model that uses probabilities to determine outliers.
Author: Leland Wilkinson [aut], Chris Fraley [cre]
Maintainer: Chris Fraley <cfraley@tableau.com>
Diff between HDoutliers versions 0.2 dated 2016-06-22 and 0.5 dated 2016-07-18
DESCRIPTION | 11 +++++------ LICENSE |only MD5 | 3 ++- 3 files changed, 7 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-13 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-05 0.1.0
Title: Log-Gaussian Cox Process
Description: Spatial and spatio-temporal modelling of point patterns using the
log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal,
multivariate and aggregated point processes using Markov chain Monte Carlo.
Author: Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J.
Diggle. Additional code contributions from Edzer Pebesma.
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between lgcp versions 1.3-14 dated 2016-01-11 and 1.3-15 dated 2016-07-18
DESCRIPTION | 14 MD5 | 778 +++---- NAMESPACE | 3 NEWS | 28 R/lgcp.R | 50 R/minimumContrast.R | 1210 ++++++------ R/parameterEstimation.R | 1466 +++++++-------- build/vignette.rds |binary data/wpopdata.rda |binary data/wtowncoords.rda |binary data/wtowns.rda |binary inst/doc/lgcp.pdf |binary man/BetaParameters.Rd | 2 man/C.diff.single.im.Rd | 2 man/CovFunction.Rd | 4 man/CovFunction.function.Rd | 2 man/CovParameters.Rd | 2 man/Cvb.Rd | 2 man/EvaluatePrior.Rd | 2 man/Extract.mstppp.Rd | 2 man/Extract.stppp.Rd | 2 man/GAfinalise.MonteCarloAverage.Rd | 2 man/GAfinalise.Rd | 2 man/GAfinalise.nullAverage.Rd | 2 man/GAinitialise.MonteCarloAverage.Rd | 2 man/GAinitialise.Rd | 4 man/GAinitialise.nullAverage.Rd | 2 man/GAreturnvalue.MonteCarloAverage.Rd | 2 man/GAreturnvalue.Rd | 2 man/GAreturnvalue.nullAverage.Rd | 2 man/GAupdate.MonteCarloAverage.Rd | 2 man/GAupdate.Rd | 2 man/GAupdate.nullAverage.Rd | 2 man/GFfinalise.Rd | 4 man/GFfinalise.dump2dir.Rd | 2 man/GFfinalise.nullFunction.Rd | 2 man/GFinitialise.Rd | 4 man/GFinitialise.dump2dir.Rd | 2 man/GFinitialise.nullFunction.Rd | 2 man/GFreturnvalue.Rd | 4 man/GFreturnvalue.dump2dir.Rd | 2 man/GFreturnvalue.nullFunction.Rd | 2 man/GFupdate.Rd | 4 man/GFupdate.dump2dir.Rd | 2 man/GFupdate.nullFunction.Rd | 2 man/GPdrv.Rd | 2 man/GPdrv2.Rd | 2 man/GPdrv2_Multitype.Rd | 2 man/GPlist2array.Rd | 2 man/GPrealisation.Rd | 2 man/GammafromY.Rd | 2 man/GaussianPrior.Rd | 2 man/K.diff.single.Rd | 2 man/K.u.Rd | 2 man/K.val.Rd | 2 man/KinhomAverage.Rd | 2 man/LogGaussianPrior.Rd | 2 man/MALAlgcp.Rd | 2 man/MALAlgcpAggregateSpatial.PlusPars.Rd | 2 man/MALAlgcpMultitypeSpatial.PlusPars.Rd | 2 man/MALAlgcpSpatial.PlusPars.Rd | 2 man/MALAlgcpSpatial.Rd | 2 man/MALAlgcpSpatioTemporal.PlusPars.Rd | 2 man/MonteCarloAverage.Rd | 14 man/PriorSpec.Rd | 2 man/PriorSpec.list.Rd | 2 man/RandomFieldsCovFct.Rd | 2 man/SpatialPolygonsDataFrame.stapp.Rd | 2 man/SpikedExponentialCovFct.Rd | 2 man/YfromGamma.Rd | 2 man/add.list.Rd | 2 man/addTemporalCovariates.Rd | 8 man/affine.SpatialPolygonsDataFrame.Rd | 2 man/affine.fromFunction.Rd | 2 man/affine.fromSPDF.Rd | 2 man/affine.fromXYZ.Rd | 2 man/affine.stppp.Rd | 2 man/aggCovInfo.ArealWeightedMean.Rd | 2 man/aggCovInfo.ArealWeightedSum.Rd | 2 man/aggCovInfo.Majority.Rd | 2 man/aggCovInfo.Rd | 2 man/aggregateCovariateInfo.Rd | 2 man/aggregateformulaList.Rd | 2 man/andrieuthomsh.Rd | 16 man/as.SpatialGridDataFrame.Rd | 2 man/as.SpatialGridDataFrame.fromXYZ.Rd | 2 man/as.SpatialPixelsDataFrame.Rd | 2 man/as.SpatialPixelsDataFrame.lgcpgrid.Rd | 2 man/as.array.lgcpgrid.Rd | 2 man/as.fromXYZ.Rd | 2 man/as.fromXYZ.fromFunction.Rd | 2 man/as.im.fromFunction.Rd | 2 man/as.im.fromSPDF.Rd | 2 man/as.im.fromXYZ.Rd | 2 man/as.list.lgcpgrid.Rd | 4 man/as.owin.stapp.Rd | 2 man/as.owinlist.Rd | 2 man/as.owinlist.SpatialPolygonsDataFrame.Rd | 2 man/as.owinlist.stapp.Rd | 2 man/as.ppp.mstppp.Rd | 2 man/as.ppp.stppp.Rd | 2 man/as.stppp.Rd | 2 man/as.stppp.stapp.Rd | 2 man/assigninterp.Rd | 16 man/at.Rd | 2 man/autocorr.Rd | 4 man/autocorrMultitype.Rd | 2 man/betavals.Rd | 2 man/blockcircbase.Rd | 4 man/blockcircbaseFunction.Rd | 6 man/bt.scalar.Rd | 2 man/checkObsWin.Rd | 2 man/chooseCellwidth.Rd | 8 man/circulant.Rd | 2 man/circulant.matrix.Rd | 4 man/circulant.numeric.Rd | 2 man/clearinterp.Rd | 2 man/computeGradtruncSpatial.Rd | 2 man/computeGradtruncSpatioTemporal.Rd | 2 man/condProbs.Rd | 4 man/constantInTime.Rd | 2 man/constantInTime.numeric.Rd | 2 man/constantInTime.stppp.Rd | 2 man/constanth.Rd | 4 man/cov.interp.fft.Rd | 2 man/covEffects.Rd | 2 man/d.func.Rd | 2 man/density.stppp.Rd | 2 man/discreteWindow.Rd | 2 man/discreteWindow.lgcpPredict.Rd | 2 man/dump2dir.Rd | 12 man/eigenfrombase.Rd | 2 man/etavals.Rd | 2 man/exceedProbs.Rd | 2 man/exceedProbsAggregated.Rd | 2 man/expectation.Rd | 2 man/expectation.lgcpPredict.Rd | 8 man/expectation.lgcpPredictSpatialOnlyPlusParameters.Rd | 4 man/exponentialCovFct.Rd | 2 man/extendspatialAtRisk.Rd | 4 man/extract.Rd | 2 man/extract.lgcpPredict.Rd | 4 man/fftgrid.Rd | 2 man/fftinterpolate.Rd | 2 man/fftinterpolate.fromFunction.Rd | 2 man/fftinterpolate.fromSPDF.Rd | 2 man/fftinterpolate.fromXYZ.Rd | 2 man/fftmultiply.Rd | 2 man/formulaList.Rd | 2 man/g.diff.single.Rd | 2 man/gOverlay.Rd | 2 man/genFFTgrid.Rd | 2 man/getCellCounts.Rd | 2 man/getCounts.Rd | 2 man/getCovParameters.GPrealisation.Rd | 2 man/getCovParameters.Rd | 2 man/getCovParameters.list.Rd | 2 man/getLHSformulaList.Rd | 2 man/getRotation.Rd | 2 man/getRotation.default.Rd | 2 man/getRotation.stppp.Rd | 2 man/getZmat.Rd | 4 man/getZmats.Rd | 2 man/getinterp.Rd | 14 man/getlgcpPredictSpatialINLA.Rd | 2 man/getpolyol.Rd | 4 man/getup.Rd | 2 man/ginhomAverage.Rd | 2 man/grid2spdf.Rd | 2 man/grid2spix.Rd | 2 man/grid2spoly.Rd | 2 man/grid2spts.Rd | 2 man/gridInWindow.Rd | 2 man/gridav.Rd | 2 man/gridav.lgcpPredict.Rd | 2 man/gridfun.Rd | 2 man/gridfun.lgcpPredict.Rd | 2 man/gu.Rd | 2 man/guessinterp.Rd | 18 man/hasNext.Rd | 2 man/hasNext.iter.Rd | 2 man/hvals.Rd | 2 man/hvals.lgcpPredict.Rd | 4 man/identify.lgcpPredict.Rd | 2 man/identifygrid.Rd | 2 man/image.lgcpgrid.Rd | 4 man/initialiseAMCMC.Rd | 2 man/initialiseAMCMC.andrieuthomsh.Rd | 2 man/initialiseAMCMC.constanth.Rd | 2 man/integerise.Rd | 2 man/integerise.mstppp.Rd | 2 man/integerise.stppp.Rd | 2 man/intens.Rd | 2 man/intens.lgcpPredict.Rd | 2 man/intens.lgcpSimMultitypeSpatialPlusParameters.Rd | 2 man/intens.lgcpSimSpatialPlusParameters.Rd | 2 man/interptypes.Rd | 14 man/inversebase.Rd | 2 man/is.SPD.Rd | 2 man/is.burnin.Rd | 2 man/is.pow2.Rd | 2 man/is.retain.Rd | 2 man/iteration.Rd | 2 man/lambdaEst.Rd | 2 man/lambdaEst.ppp.Rd | 22 man/lambdaEst.stppp.Rd | 22 man/lgcp-package.Rd | 5 man/lgcpForecast.Rd | 4 man/lgcpInits.Rd | 12 man/lgcpPredict.Rd | 30 man/lgcpPredictAggregateSpatialPlusPars.Rd | 38 man/lgcpPredictAggregated.Rd | 32 man/lgcpPredictMultitypeSpatialPlusPars.Rd | 30 man/lgcpPredictSpatial.Rd | 20 man/lgcpPredictSpatialINLA.Rd | 22 man/lgcpPredictSpatialPlusPars.Rd | 38 man/lgcpPredictSpatioTemporalPlusPars.Rd | 46 man/lgcpPrior.Rd | 4 man/lgcpSim.Rd | 16 man/lgcpSimMultitypeSpatialCovariates.Rd | 2 man/lgcpSimSpatial.Rd | 2 man/lgcpSimSpatialCovariates.Rd | 2 man/lgcpbayes.Rd | 2 man/lgcpgrid.Rd | 8 man/lgcpgrid.array.Rd | 4 man/lgcpgrid.list.Rd | 4 man/lgcpgrid.matrix.Rd | 4 man/lgcppars.Rd | 2 man/lgcpvignette.Rd | 2 man/loc2poly.Rd | 2 man/loop.mcmc.Rd | 2 man/ltar.Rd | 4 man/matchcovariance.Rd | 2 man/mcmcLoop.Rd | 2 man/mcmcProgressNone.Rd | 2 man/mcmcProgressPrint.Rd | 2 man/mcmcProgressTextBar.Rd | 2 man/mcmcProgressTk.Rd | 2 man/mcmcpars.Rd | 2 man/mcmctrace.Rd | 2 man/mcmctrace.lgcpPredict.Rd | 2 man/meanfield.Rd | 2 man/meanfield.lgcpPredict.Rd | 4 man/meanfield.lgcpPredictINLA.Rd | 2 man/minimum.contrast.Rd | 4 man/minimum.contrast.spatiotemporal.Rd | 4 man/mstppp.Rd | 2 man/mstppp.list.Rd | 4 man/mstppp.ppp.Rd | 2 man/mstppp.stppp.Rd | 2 man/muEst.Rd | 2 man/multiply.list.Rd | 2 man/my.KinhomAverage.Rd | 4 man/my.ginhomAverage.Rd | 4 man/neattable.Rd | 2 man/neigh2D.Rd | 2 man/nextStep.Rd | 2 man/nullAverage.Rd | 2 man/nullFunction.Rd | 2 man/numCases.Rd | 2 man/osppp2latlon.Rd | 2 man/osppp2merc.Rd | 2 man/paramprec.Rd | 4 man/paramprecbase.Rd | 4 man/parautocorr.Rd | 2 man/parsummary.Rd | 2 man/plot.fromSPDF.Rd | 2 man/plot.fromXYZ.Rd | 2 man/plot.lgcpAutocorr.Rd | 4 man/plot.lgcpPredict.Rd | 2 man/plot.lgcpQuantiles.Rd | 4 man/plot.lgcpZmat.Rd | 2 man/plot.lgcpgrid.Rd | 4 man/plot.mcmcdiag.Rd | 4 man/plot.mstppp.Rd | 2 man/plot.stppp.Rd | 2 man/plot.temporalAtRisk.Rd | 2 man/plotExceed.Rd | 2 man/plotExceed.array.Rd | 2 man/plotExceed.lgcpPredict.Rd | 6 man/plotit.Rd | 2 man/postcov.Rd | 4 man/postcov.lgcpPredictAggregateSpatialPlusParameters.Rd | 2 man/postcov.lgcpPredictMultitypeSpatialPlusParameters.Rd | 2 man/postcov.lgcpPredictSpatialOnlyPlusParameters.Rd | 2 man/postcov.lgcpPredictSpatioTemporalPlusParameters.Rd | 2 man/print.dump2dir.Rd | 2 man/print.fromFunction.Rd | 2 man/print.fromSPDF.Rd | 2 man/print.fromXYZ.Rd | 2 man/print.gridaverage.Rd | 2 man/print.lgcpPredict.Rd | 2 man/print.lgcpgrid.Rd | 2 man/print.mcmc.Rd | 2 man/print.mstppp.Rd | 2 man/print.stapp.Rd | 2 man/print.stppp.Rd | 2 man/print.temporalAtRisk.Rd | 2 man/priorpost.Rd | 2 man/quantile.lgcpPredict.Rd | 6 man/quantile.lgcpgrid.Rd | 4 man/raster.lgcpgrid.Rd | 2 man/rescale.mstppp.Rd | 2 man/rescale.stppp.Rd | 2 man/resetLoop.Rd | 2 man/rgauss.Rd | 2 man/roteffgain.Rd | 2 man/rotmat.Rd | 2 man/rr.Rd | 2 man/rr.lgcpPredict.Rd | 2 man/samplePosterior.Rd | 4 man/segProbs.Rd | 6 man/seintens.Rd | 2 man/seintens.lgcpPredict.Rd | 2 man/selectObsWindow.Rd | 4 man/selectObsWindow.default.Rd | 4 man/selectObsWindow.stppp.Rd | 4 man/serr.Rd | 2 man/serr.lgcpPredict.Rd | 2 man/setTxtProgressBar2.Rd | 2 man/setoutput.Rd | 2 man/showGrid.Rd | 2 man/showGrid.default.Rd | 2 man/showGrid.lgcpPredict.Rd | 2 man/showGrid.stppp.Rd | 2 man/smultiply.list.Rd | 2 man/sparsebase.Rd | 2 man/spatialAtRisk.Rd | 34 man/spatialAtRisk.SpatialGridDataFrame.Rd | 2 man/spatialAtRisk.SpatialPolygonsDataFrame.Rd | 2 man/spatialAtRisk.bivden.Rd | 2 man/spatialAtRisk.default.Rd | 2 man/spatialAtRisk.fromXYZ.Rd | 2 man/spatialAtRisk.function.Rd | 2 man/spatialAtRisk.im.Rd | 2 man/spatialAtRisk.lgcpgrid.Rd | 2 man/spatialIntensities.Rd | 2 man/spatialIntensities.fromSPDF.Rd | 2 man/spatialIntensities.fromXYZ.Rd | 2 man/spatialparsEst.Rd | 6 man/stGPrealisation.Rd | 2 man/stapp.Rd | 2 man/stapp.SpatialPolygonsDataFrame.Rd | 2 man/stapp.list.Rd | 4 man/stppp.Rd | 2 man/stppp.list.Rd | 2 man/stppp.ppp.Rd | 2 man/summary.lgcpgrid.Rd | 4 man/summary.mcmc.Rd | 2 man/target.and.grad.AggregateSpatialPlusPars.Rd | 2 man/target.and.grad.MultitypespatialPlusPars.Rd | 2 man/target.and.grad.SpatioTemporalPlusPars.Rd | 2 man/target.and.grad.spatial.Rd | 2 man/target.and.grad.spatialPlusPars.Rd | 2 man/target.and.grad.spatiotemporal.Rd | 2 man/tempRaster.Rd | 2 man/temporalAtRisk.Rd | 20 man/temporalAtRisk.function.Rd | 4 man/temporalAtRisk.numeric.Rd | 4 man/textsummary.Rd | 2 man/thetaEst.Rd | 2 man/toral.cov.mat.Rd | 2 man/touchingowin.Rd | 2 man/traceplots.Rd | 2 man/transblack.Rd | 2 man/transblue.Rd | 2 man/transgreen.Rd | 2 man/transred.Rd | 2 man/txtProgressBar2.Rd | 2 man/updateAMCMC.Rd | 2 man/updateAMCMC.andrieuthomsh.Rd | 2 man/updateAMCMC.constanth.Rd | 2 man/varfield.Rd | 2 man/varfield.lgcpPredict.Rd | 4 man/varfield.lgcpPredictINLA.Rd | 2 man/window.lgcpPredict.Rd | 4 man/xvals.Rd | 2 man/xvals.SpatialGridDataFrame.Rd | 2 man/xvals.default.Rd | 2 man/xvals.fromXYZ.Rd | 2 man/xvals.lgcpPredict.Rd | 2 man/yvals.Rd | 2 man/yvals.SpatialGridDataFrame.Rd | 2 man/yvals.default.Rd | 2 man/yvals.fromXYZ.Rd | 2 man/yvals.lgcpPredict.Rd | 2 man/zvals.Rd | 2 man/zvals.SpatialGridDataFrame.Rd | 2 man/zvals.default.Rd | 2 man/zvals.fromXYZ.Rd | 2 390 files changed, 2453 insertions(+), 2441 deletions(-)
Title: Numeric Routines for Optically Stimulated Luminescence Dating
Description: Package for optimizing regular numeric problems in optically stimulated luminescence
dating, such as: equivalent dose calculation, annual dose rate determination, growth curve
fitting, decay curve decomposition, statistical age model optimization, and statistical
plot visualization.
Author: Jun Peng [aut, cre], Bo Li [aut], Jorge More [ctb], Burton Garbow [ctb], Kenneth Hillstrom [ctb], John Burkardt [ctb], Paul Gilbert [ctb], Ravi Varadhan [ctb]
Maintainer: Jun Peng <pengjun10@mails.ucas.ac.cn>
Diff between numOSL versions 1.9 dated 2016-01-23 and 2.0 dated 2016-07-18
numOSL-1.9/numOSL/src/inverse.f90 |only numOSL-2.0/numOSL/DESCRIPTION | 17 numOSL-2.0/numOSL/MD5 | 94 +++-- numOSL-2.0/numOSL/NAMESPACE | 8 numOSL-2.0/numOSL/R/analyst.R | 182 ++++------ numOSL-2.0/numOSL/R/calED.R | 347 +++++++++----------- numOSL-2.0/numOSL/R/calSARED.R |only numOSL-2.0/numOSL/R/calSGCED.R |only numOSL-2.0/numOSL/R/dbED.R | 44 +- numOSL-2.0/numOSL/R/decomp.R | 185 ++++------ numOSL-2.0/numOSL/R/fastED.R | 288 ++++++---------- numOSL-2.0/numOSL/R/fitGrowth.R | 175 ++++------ numOSL-2.0/numOSL/R/lsNORM.R |only numOSL-2.0/numOSL/R/pickSARED.R |only numOSL-2.0/numOSL/R/pickSARdata.R |only numOSL-2.0/numOSL/THANKS | 9 numOSL-2.0/numOSL/data/SARdata.RData |only numOSL-2.0/numOSL/man/RadialPlotter.Rd | 6 numOSL-2.0/numOSL/man/SARdata.Rd |only numOSL-2.0/numOSL/man/Signaldata.Rd | 2 numOSL-2.0/numOSL/man/analyst.Rd | 66 +-- numOSL-2.0/numOSL/man/calDA.Rd | 4 numOSL-2.0/numOSL/man/calED.Rd | 78 +--- numOSL-2.0/numOSL/man/calSARED.Rd |only numOSL-2.0/numOSL/man/calSGCED.Rd |only numOSL-2.0/numOSL/man/dbED.Rd | 13 numOSL-2.0/numOSL/man/decomp.Rd | 34 - numOSL-2.0/numOSL/man/fastED.Rd | 56 +-- numOSL-2.0/numOSL/man/fitGrowth.Rd | 42 +- numOSL-2.0/numOSL/man/lsNORM.Rd |only numOSL-2.0/numOSL/man/mcFMM.Rd | 16 numOSL-2.0/numOSL/man/mcMAM.Rd | 14 numOSL-2.0/numOSL/man/numOSL-package.Rd | 23 - numOSL-2.0/numOSL/man/pickSARED.Rd |only numOSL-2.0/numOSL/man/pickSARdata.Rd |only numOSL-2.0/numOSL/man/psRadialPlot.Rd | 4 numOSL-2.0/numOSL/man/reportSAM.Rd | 7 numOSL-2.0/numOSL/man/select.Rd | 7 numOSL-2.0/numOSL/man/viewer.Rd | 4 numOSL-2.0/numOSL/src/apfmmstd.f90 | 8 numOSL-2.0/numOSL/src/apmamstd.f90 | 14 numOSL-2.0/numOSL/src/calED.f90 | 554 ++++++++++++++++++-------------- numOSL-2.0/numOSL/src/calED1.f90 |only numOSL-2.0/numOSL/src/calSGCED.f90 |only numOSL-2.0/numOSL/src/calcSF.f90 |only numOSL-2.0/numOSL/src/decomp.f90 | 25 - numOSL-2.0/numOSL/src/fitGOK.f90 |only numOSL-2.0/numOSL/src/fitGrowth.f90 | 159 ++++++--- numOSL-2.0/numOSL/src/inipars.f90 | 50 +- numOSL-2.0/numOSL/src/interpolate.f90 | 212 ++++++------ numOSL-2.0/numOSL/src/inverse_ger.f90 |only numOSL-2.0/numOSL/src/inverse_sym.f90 |only numOSL-2.0/numOSL/src/linefit.f90 | 15 numOSL-2.0/numOSL/src/lmfit.f90 | 48 +- numOSL-2.0/numOSL/src/lmfit1.f90 |only numOSL-2.0/numOSL/src/lmfunc1.f90 |only numOSL-2.0/numOSL/src/minpack.f90 | 25 + numOSL-2.0/numOSL/src/minpack1.f90 |only numOSL-2.0/numOSL/src/numHess.f90 | 89 ----- 59 files changed, 1433 insertions(+), 1491 deletions(-)
Title: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Description: NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).
Author: Greg Jefferis and James Manton
Maintainer: Greg Jefferis <jefferis@gmail.com>
Diff between nat versions 1.8.1 dated 2015-12-30 and 1.8.4 dated 2016-07-18
DESCRIPTION | 17 MD5 | 346 ++++++++++---------- NAMESPACE | 19 - NEWS | 41 ++ R/cmtkreg.R | 33 + R/dotprops.R | 13 R/graph-nodes.R | 5 R/hxsurf.R | 24 + R/im3d.R | 67 +++ R/nat-data.R | 5 R/nat-package.R | 23 + R/neuron-io.R | 87 +++-- R/neuron-plot.R | 18 - R/neuron.R | 67 +++ R/neuronlist.R | 31 + R/neuronlist_interactive_3d.R | 2 R/ngraph.R | 160 +++++++-- R/potential_synapses.R | 1 R/reglist.R |only R/summary.R | 1 R/xform.R | 65 ++- R/xformimage.R | 9 R/xformpoints.R | 45 ++ R/zzz.R | 10 README.md | 21 + man/Cell07PNs.Rd | 18 - man/MBL.surf.Rd | 7 man/affmat2cmtkparams.Rd | 6 man/all.equal.dotprops.Rd | 6 man/all.equal.im3d.Rd | 4 man/all.equal.neuron.Rd | 6 man/amiramesh-io.Rd | 14 man/amiratype.Rd | 12 man/as.im3d.Rd | 40 -- man/as.mesh3d.Rd | 12 man/as.neuronlist.Rd | 6 man/as.neuronlist.neuronlistfh.Rd | 2 man/boundingbox.Rd | 64 +-- man/c.neuronlist.Rd | 2 man/clampmax.Rd | 12 man/cmtk.bindir.Rd | 38 +- man/cmtk.call.Rd | 28 - man/cmtk.dof2mat.Rd | 6 man/cmtk.extract_affine.Rd | 6 man/cmtk.mat2dof.Rd | 13 man/cmtk.reformatx.Rd | 28 - man/cmtk.statistics.Rd | 55 +-- man/cmtk.targetvolume.Rd | 10 man/cmtk.version.Rd | 8 man/cmtkparams2affmat.Rd | 25 - man/cmtkreg.Rd | 25 + man/cmtkreglist.Rd | 14 man/coord2ind.Rd | 2 man/dotprops-arithmetic.Rd | 2 man/dotprops.Rd | 24 - man/fileformats.Rd | 60 +-- man/find.neuron.Rd | 12 man/find.soma.Rd | 10 man/flip.Rd | 10 man/get-set-neuronlist-data.frame.Rd | 10 man/graph.nodes.Rd | 6 man/im3d-coords.Rd | 23 - man/im3d-io.Rd | 39 -- man/im3d.Rd | 46 +- man/image.im3d.Rd | 48 +- man/imexpand.grid.Rd | 24 - man/imscalebar.Rd | 10 man/imslice.Rd | 30 - man/ind2coord.Rd | 8 man/intersect.Rd | 4 man/is.amiramesh.Rd | 13 man/is.fijitraces.Rd | 2 man/is.im3d.Rd | 24 - man/is.neuroml.Rd | 6 man/is.neuronlist.Rd | 20 - man/is.nrrd.Rd | 8 man/is.swc.Rd | 6 man/is.vaa3draw.Rd | 10 man/kcs20.Rd | 26 - man/mask.Rd |only man/materials.Rd | 11 man/mirror.Rd | 61 +-- man/nat-internal.Rd | 2 man/nat-package.Rd | 192 +++++------ man/ndigest.Rd | 32 - man/neuron-arithmetic.Rd | 2 man/neuron.Rd | 83 +++- man/neuronlist-arithmetic.Rd | 20 - man/neuronlist-dataframe-methods.Rd | 32 - man/neuronlist.Rd | 46 +- man/neuronlistfh.Rd | 159 ++++----- man/ngraph.Rd | 64 +-- man/nlapply.Rd | 77 +--- man/nlscan.Rd | 22 - man/nopen3d.Rd | 2 man/normalise_swc.Rd | 8 man/npop3d.Rd | 2 man/nrrd.voxdims.Rd | 8 man/origin.Rd | 30 - man/pan3d.Rd | 4 man/plot.neuron.Rd | 31 + man/plot.neuronlist.Rd | 30 - man/plot3d.Rd | 2 man/plot3d.boundingbox.Rd | 18 - man/plot3d.dotprops.Rd | 30 - man/plot3d.hxsurf.Rd | 22 - man/plot3d.neuron.Rd | 22 - man/plot3d.neuronlist.Rd | 75 ++-- man/pointsinside.Rd | 15 man/potential_synapses.Rd | 10 man/projection.Rd | 34 - man/prune.Rd | 22 + man/prune_strahler.Rd | 10 man/prune_vertices.Rd | 71 +++- man/read.cmtk.Rd | 19 - man/read.cmtkreg.Rd | 8 man/read.hxsurf.Rd | 61 +-- man/read.landmarks.Rd | 30 - man/read.morphml.Rd | 34 - man/read.neuron.Rd | 56 +-- man/read.neuron.fiji.Rd | 6 man/read.neuron.neuroml.Rd | 8 man/read.neuron.swc.Rd | 36 +- man/read.neuronlistfh.Rd | 67 +-- man/read.neurons.Rd | 64 +-- man/read.nrrd.Rd | 12 man/read.vaa3draw.Rd | 4 man/reglist.Rd |only man/remotesync.Rd | 13 man/resample.Rd | 8 man/rootpoints.Rd | 13 man/scale.neuron.Rd | 14 man/seglengths.Rd | 16 man/seglist.Rd | 16 man/seglist2swc.Rd | 16 man/segmentgraph.Rd | 14 man/setdiff.Rd | 8 man/simplify_reglist.Rd |only man/spine.Rd | 59 ++- man/strahler_order.Rd | 20 - man/sub-.neuronlistfh.Rd | 27 - man/sub2ind.Rd | 2 man/subset.Rd | 6 man/subset.dotprops.Rd | 6 man/subset.hxsurf.Rd | 16 man/subset.neuron.Rd | 62 ++- man/subset.neuronlist.Rd | 30 - man/summary.neuron.Rd | 25 - man/threshold.Rd | 33 - man/union.Rd | 4 man/unmask.Rd | 36 -- man/voxdims.Rd | 29 - man/write.amiramesh.Rd | 10 man/write.cmtk.Rd | 12 man/write.cmtkreg.Rd | 14 man/write.hxsurf.Rd | 17 man/write.neuron.Rd | 16 man/write.neuronlistfh.Rd | 37 -- man/write.neurons.Rd | 32 - man/write.nrrd.Rd | 92 ++--- man/xform.Rd | 89 ++--- man/xformimage.Rd | 5 man/xformpoints.Rd | 16 man/xyzmatrix.Rd | 6 tests/testthat/test-cmtk_geometry.R | 8 tests/testthat/test-graph-nodes.R | 2 tests/testthat/test-hxsurf.R | 5 tests/testthat/test-im3d.R | 21 - tests/testthat/test-neuron-io.R | 18 - tests/testthat/test-neuron.R | 18 - tests/testthat/test-neuronlist.R | 9 tests/testthat/test-ngraph.R | 25 + tests/testthat/test-nrrd-io.R | 2 tests/testthat/test-reglist.R |only tests/testthat/test-xform.R | 8 tests/testthat/test-xformpoints.R | 19 + tests/testthat/testdata/amira/malformed_labels.surf |only 177 files changed, 2647 insertions(+), 2021 deletions(-)
Title: Tools for Polyploid Microsatellite Analysis
Description: A collection of tools to handle microsatellite data of
any ploidy (and samples of mixed ploidy) where allele copy number is not
known in partially heterozygous genotypes. It can import and export data in
ABI 'GeneMapper', 'Structure', 'ATetra', 'Tetrasat'/'Tetra', 'GenoDive', 'SPAGeDi',
'POPDIST', 'STRand', and binary presence/absence formats. It can calculate
pairwise distances between individuals using a stepwise mutation model or
infinite alleles model, with or without taking ploidies and allele frequencies
into account. These distances can be used for the calculation of clonal
diversity statistics or used for further analysis in R. Allelic diversity
statistics are also available. polysat can assist the user in estimating the
ploidy of samples, and it can estimate allele frequencies in
populations, calculate pairwise Fst values based on those frequencies, and
export allele frequencies to 'SPAGeDi' and 'adegenet'. Functions are also
included for assigning alleles to isoloci in cases where one pair of
microsatellite primers amplifies alleles from two or more independently
segregating isoloci.
Author: Lindsay V. Clark [aut, cre]
Maintainer: Lindsay V. Clark <lvclark@illinois.edu>
Diff between polysat versions 1.4-1 dated 2015-08-18 and 1.5-0 dated 2016-07-18
DESCRIPTION | 34 +- MD5 | 75 ++--- NAMESPACE | 9 NEWS | 24 + R/allopolyploidy.R | 319 ++++++++++++++++++++++-- R/class_conversion.R | 6 R/classes_generics_methods.R | 36 ++ R/dataexport.R | 13 R/dataimport.R | 16 - R/population_stats.R | 85 ++++-- build/vignette.rds |binary inst/CITATION | 4 inst/doc/allopolyVignette.R | 283 +++++++++------------ inst/doc/allopolyVignette.Rnw | 540 ++++++++++++++++++++++++----------------- inst/doc/allopolyVignette.pdf |binary inst/doc/polysattutorial.R | 14 - inst/doc/polysattutorial.Rnw | 42 ++- inst/doc/polysattutorial.pdf |binary inst/extdata/STRandExample.txt | 18 - man/alleleCorrelations.Rd | 11 man/alleleDiversity.Rd | 148 +++++------ man/calcFst.Rd | 77 ++++- man/catalanAlleles.Rd | 288 ++++++++++----------- man/gendata.to.genind.Rd | 4 man/genotypeDiversity.Rd | 2 man/mergeAlleleAssignments.Rd | 164 ++++++------ man/pld.Rd | 206 +++++++-------- man/ploidysuper-class.Rd | 146 +++++------ man/plotSSAllo.Rd |only man/polysat-internal.Rd | 17 + man/read.GeneMapper.Rd | 4 man/read.STRand.Rd | 174 ++++++------- man/read.Tetrasat.Rd | 4 man/reformatPloidies.Rd | 224 ++++++++--------- man/write.GeneMapper.Rd | 4 man/write.Tetrasat.Rd | 4 vignettes/STRandExample.txt | 18 - vignettes/allopolyVignette.Rnw | 540 ++++++++++++++++++++++++----------------- vignettes/polysattutorial.Rnw | 42 ++- 39 files changed, 2154 insertions(+), 1441 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
Description: Functions used to fit and test the phenology of species based on counts.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between phenology versions 5.1 dated 2016-05-03 and 5.2 dated 2016-07-18
phenology-5.1/phenology/inst/shiny/Shiny-Phenology.css |only phenology-5.1/phenology/inst/shiny/style.R |only phenology-5.1/phenology/inst/shiny/www/00.JPG |only phenology-5.1/phenology/inst/shiny/www/ACP_PDF.png |only phenology-5.1/phenology/inst/shiny/www/b0.png |only phenology-5.1/phenology/inst/shiny/www/b1.png |only phenology-5.2/phenology/DESCRIPTION | 13 - phenology-5.2/phenology/MD5 | 53 ++---- phenology-5.2/phenology/NAMESPACE | 2 phenology-5.2/phenology/NEWS | 11 + phenology-5.2/phenology/R/Likelihood_phenology.R | 9 - phenology-5.2/phenology/R/Lnegbin.R | 67 +++++--- phenology-5.2/phenology/R/add_phenology.R | 25 ++- phenology-5.2/phenology/R/fit_phenology.R | 2 phenology-5.2/phenology/R/map_phenology.R | 3 phenology-5.2/phenology/R/phenology-package.R | 4 phenology-5.2/phenology/R/phenology.R | 15 + phenology-5.2/phenology/R/plot.phenology.R | 10 - phenology-5.2/phenology/R/plot.phenologymap.R | 2 phenology-5.2/phenology/R/plot_delta.R | 52 ++---- phenology-5.2/phenology/R/plot_phi.R | 15 - phenology-5.2/phenology/R/read_phenology.R | 6 phenology-5.2/phenology/inst/shiny/server.R | 140 ++++++++++------- phenology-5.2/phenology/inst/shiny/ui.R | 119 +++++++------- phenology-5.2/phenology/inst/shiny/www/PDF.png |only phenology-5.2/phenology/man/fit_phenology.Rd | 2 phenology-5.2/phenology/man/likelihood_phenology.Rd | 6 phenology-5.2/phenology/man/phenology-package.Rd | 4 phenology-5.2/phenology/man/phenology.Rd | 6 phenology-5.2/phenology/man/plot_delta.Rd | 4 phenology-5.2/phenology/man/plot_phi.Rd | 4 31 files changed, 324 insertions(+), 250 deletions(-)
Title: Build Data Structures for Common Statistical Analysis
Description: Use a consistent syntax to create data structures of common
statistical techniques that can be continued in a pipe chain.
Design the analysis, add settings and variables, construct the results, and
polish the final structure. Rinse and repeat for any number of statistical
techniques.
Author: Luke Johnston [aut, cre]
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Diff between mason versions 0.2.4 dated 2016-07-15 and 0.2.5 dated 2016-07-18
DESCRIPTION | 10 - MD5 | 19 +-- NAMESPACE | 1 NEWS.md |only R/design.R | 2 R/utils.R | 12 +- inst/doc/mason.R | 2 inst/doc/mason.Rmd | 2 inst/doc/mason.html | 252 ++++++++---------------------------------------- inst/doc/specifics.html | 4 vignettes/mason.Rmd | 2 11 files changed, 71 insertions(+), 235 deletions(-)
Title: Relative Risk Regression Using the Log-Binomial Model
Description: Methods for fitting log-link GLMs and GAMs to binomial data,
including EM-type algorithms with more stable convergence properties than standard methods.
Author: Mark W. Donoghoe [aut, cre],
Ian C. Marschner [ths],
Alexandra C. Gillett [ctb] (Wrote an initial version of the nplbin
function)
Maintainer: Mark W. Donoghoe <markdonoghoe@gmail.com>
Diff between logbin versions 1.2 dated 2015-05-12 and 2.0 dated 2016-07-18
logbin-1.2/logbin/ChangeLog |only logbin-1.2/logbin/man/logbin.allref.Rd |only logbin-1.2/logbin/man/logbin.design.Rd |only logbin-1.2/logbin/man/logbin.smooth.allref.Rd |only logbin-1.2/logbin/man/logbin.smooth.design.Rd |only logbin-2.0/logbin/DESCRIPTION | 23 + logbin-2.0/logbin/MD5 | 87 +++--- logbin-2.0/logbin/NAMESPACE | 18 + logbin-2.0/logbin/NEWS.md |only logbin-2.0/logbin/R/B.r | 48 +-- logbin-2.0/logbin/R/Iso.r | 26 - logbin-2.0/logbin/R/anova.logbinlist.r | 123 ++++----- logbin-2.0/logbin/R/contr.isotonic.rev.r | 69 ++--- logbin-2.0/logbin/R/conv.test.r | 2 logbin-2.0/logbin/R/interpret.logbin.smooth.r | 112 ++++---- logbin-2.0/logbin/R/logbin.ab.r |only logbin-2.0/logbin/R/logbin.allref.r | 216 ++++++++-------- logbin-2.0/logbin/R/logbin.cem.r |only logbin-2.0/logbin/R/logbin.control.r | 2 logbin-2.0/logbin/R/logbin.design.r | 59 ++-- logbin-2.0/logbin/R/logbin.em.r |only logbin-2.0/logbin/R/logbin.r | 214 +++++++--------- logbin-2.0/logbin/R/logbin.reparameterise.r | 146 ++++++----- logbin-2.0/logbin/R/logbin.smooth.allref.r | 80 +++--- logbin-2.0/logbin/R/logbin.smooth.design.r | 127 ++++----- logbin-2.0/logbin/R/logbin.smooth.r | 274 +++++++++++---------- logbin-2.0/logbin/R/logbin.smooth.reparameterise.r | 135 +++++----- logbin-2.0/logbin/R/nplbin.r | 229 ++++++++--------- logbin-2.0/logbin/R/plot.logbin.smooth.r | 71 ++--- logbin-2.0/logbin/R/predict.logbin.smooth.r | 89 +++--- logbin-2.0/logbin/R/print.summary.logbin.r | 34 +- logbin-2.0/logbin/R/summary.logbin.r | 6 logbin-2.0/logbin/README.md |only logbin-2.0/logbin/inst |only logbin-2.0/logbin/man/B.Iso.Rd | 10 logbin-2.0/logbin/man/anova.logbin.Rd | 2 logbin-2.0/logbin/man/confint.logbin.Rd | 2 logbin-2.0/logbin/man/contr.isotonic.rev.Rd | 9 logbin-2.0/logbin/man/conv.test.Rd | 13 logbin-2.0/logbin/man/interpret.logbin.smooth.Rd | 2 logbin-2.0/logbin/man/logbin-package.Rd | 62 ++-- logbin-2.0/logbin/man/logbin.Rd | 127 ++++++++- logbin-2.0/logbin/man/logbin.control.Rd | 4 logbin-2.0/logbin/man/logbin.smooth.Rd | 31 ++ logbin-2.0/logbin/man/nplbin.Rd | 21 + logbin-2.0/logbin/man/plot.logbin.smooth.Rd | 2 logbin-2.0/logbin/man/predict.logbin.Rd | 2 logbin-2.0/logbin/man/predict.logbin.smooth.Rd | 2 logbin-2.0/logbin/man/summary.logbin.Rd | 7 logbin-2.0/logbin/man/vcov.logbin.Rd | 2 50 files changed, 1348 insertions(+), 1140 deletions(-)
Title: Tools for Earth Meteorological Analysis
Description: Contains many functions useful for managing 'NetCDF' files (see http://en.wikipedia.org/wiki/NetCDF), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between HelpersMG versions 1.5 dated 2016-05-01 and 1.6 dated 2016-07-18
HelpersMG-1.5/HelpersMG/R/dist.entropic.R |only HelpersMG-1.5/HelpersMG/man/dist.entropic.Rd |only HelpersMG-1.6/HelpersMG/DESCRIPTION | 8 +-- HelpersMG-1.6/HelpersMG/MD5 | 50 ++++++++++--------- HelpersMG-1.6/HelpersMG/NAMESPACE | 5 + HelpersMG-1.6/HelpersMG/NEWS | 14 ++++- HelpersMG-1.6/HelpersMG/R/DIx.R |only HelpersMG-1.6/HelpersMG/R/HelpersMG-package.R | 4 - HelpersMG-1.6/HelpersMG/R/MHalgoGen.R | 24 +++++---- HelpersMG-1.6/HelpersMG/R/as.mcmc.mcmcComposite.R | 5 + HelpersMG-1.6/HelpersMG/R/as.parameters.R | 5 + HelpersMG-1.6/HelpersMG/R/dSnbinom.R | 4 + HelpersMG-1.6/HelpersMG/R/merge.mcmcComposite.R | 5 + HelpersMG-1.6/HelpersMG/R/modeled.hist.R |only HelpersMG-1.6/HelpersMG/R/plot.mcmcComposite.R | 9 ++- HelpersMG-1.6/HelpersMG/R/plot_errbar.R | 45 +++++++++++++---- HelpersMG-1.6/HelpersMG/R/summary.mcmcComposite.R | 5 + HelpersMG-1.6/HelpersMG/R/symbol.Female.R |only HelpersMG-1.6/HelpersMG/R/symbol.Male.R |only HelpersMG-1.6/HelpersMG/man/DIx.Rd |only HelpersMG-1.6/HelpersMG/man/HelpersMG-package.Rd | 4 - HelpersMG-1.6/HelpersMG/man/MHalgoGen.Rd | 12 +++- HelpersMG-1.6/HelpersMG/man/as.mcmc.mcmcComposite.Rd | 5 + HelpersMG-1.6/HelpersMG/man/as.parameters.Rd | 5 + HelpersMG-1.6/HelpersMG/man/merge.mcmcComposite.Rd | 5 + HelpersMG-1.6/HelpersMG/man/modeled.hist.Rd |only HelpersMG-1.6/HelpersMG/man/plot.mcmcComposite.Rd | 5 + HelpersMG-1.6/HelpersMG/man/plot_errbar.Rd | 7 ++ HelpersMG-1.6/HelpersMG/man/summary.mcmcComposite.Rd | 5 + HelpersMG-1.6/HelpersMG/man/symbol.Female.Rd |only HelpersMG-1.6/HelpersMG/man/symbol.Male.Rd |only 31 files changed, 161 insertions(+), 70 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone and Ryan Kyle
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 0.9-77 dated 2016-05-13 and 0.9-79 dated 2016-07-18
epiR-0.9-77/epiR/R/epi.studysize.R |only epiR-0.9-77/epiR/man/epi.studysize.Rd |only epiR-0.9-79/epiR/DESCRIPTION | 8 epiR-0.9-79/epiR/MD5 | 60 +++--- epiR-0.9-79/epiR/R/epi.2by2.R | 296 +++++++++++++++---------------- epiR-0.9-79/epiR/R/epi.ccsize.R |only epiR-0.9-79/epiR/R/epi.cohortsize.R |only epiR-0.9-79/epiR/R/epi.descriptives.R | 6 epiR-0.9-79/epiR/R/epi.meansize.R |only epiR-0.9-79/epiR/R/epi.prev.R | 16 - epiR-0.9-79/epiR/R/epi.propsize.R |only epiR-0.9-79/epiR/R/epi.supb.R |only epiR-0.9-79/epiR/R/epi.supc.R |only epiR-0.9-79/epiR/R/epi.survivalsize.R |only epiR-0.9-79/epiR/man/epi.2by2.Rd | 6 epiR-0.9-79/epiR/man/epi.RtoBUGS.Rd | 4 epiR-0.9-79/epiR/man/epi.SClip.Rd | 6 epiR-0.9-79/epiR/man/epi.ccc.Rd | 3 epiR-0.9-79/epiR/man/epi.ccsize.Rd |only epiR-0.9-79/epiR/man/epi.cohortsize.Rd |only epiR-0.9-79/epiR/man/epi.conf.Rd | 2 epiR-0.9-79/epiR/man/epi.descriptives.Rd | 4 epiR-0.9-79/epiR/man/epi.detectsize.Rd | 4 epiR-0.9-79/epiR/man/epi.directadj.Rd | 2 epiR-0.9-79/epiR/man/epi.edr.Rd | 2 epiR-0.9-79/epiR/man/epi.equivb.Rd | 4 epiR-0.9-79/epiR/man/epi.equivc.Rd | 16 - epiR-0.9-79/epiR/man/epi.incin.Rd | 4 epiR-0.9-79/epiR/man/epi.meansize.Rd |only epiR-0.9-79/epiR/man/epi.noninfb.Rd | 8 epiR-0.9-79/epiR/man/epi.noninfc.Rd | 8 epiR-0.9-79/epiR/man/epi.prcc.Rd | 2 epiR-0.9-79/epiR/man/epi.prev.Rd | 30 ++- epiR-0.9-79/epiR/man/epi.propsize.Rd |only epiR-0.9-79/epiR/man/epi.simplesize.Rd | 1 epiR-0.9-79/epiR/man/epi.supb.Rd |only epiR-0.9-79/epiR/man/epi.supc.Rd |only epiR-0.9-79/epiR/man/epi.survivalsize.Rd |only epiR-0.9-79/epiR/man/epi.tests.Rd | 2 39 files changed, 263 insertions(+), 231 deletions(-)
Title: The SinIW Distribution
Description: Density, distribution function, quantile function, random
generation and survival function for the Sine Inverse Weibull Distribution as
defined by SOUZA, L. New Trigonometric Class of Probabilistic Distributions.
219 p. Thesis (Doctorate in Biometry and Applied Statistics) - Department of
Statistics and Information, Federal Rural University of Pernambuco, Recife,
Pernambuco, 2015 (available at <http://www.openthesis.org/documents/New-trigonometric-classes-probabilistic-distributions-602633.html>) and BRITO, C. C. R. Method Distributions generator and
Probability Distributions Classes. 241 p. Thesis (Doctorate in Biometry and
Applied Statistics) - Department of Statistics and Information, Federal Rural
University of Pernambuco, Recife, Pernambuco, 2014 (available upon request).
Author: Luciano Souza <lcnsza@gmail.com>, Lucas Gallindo <lgallindo@gmail.com>, Luciano Serafim de Souza <lucianoserafimdesouza@gmail.com>
Maintainer: Lucas Gallindo <lgallindo@gmail.com>
Diff between SinIW versions 0.1 dated 2016-07-17 and 0.2 dated 2016-07-18
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- README.md | 11 ++++++++++- 3 files changed, 16 insertions(+), 7 deletions(-)
Title: The SecKW Distribution
Description: Density, distribution function, quantile function, random
generation and survival function for the Secant Kumaraswamy Weibull Distribution
as defined by SOUZA, L. New Trigonometric Class of Probabilistic Distributions.
219 p. Thesis (Doctorate in Biometry and Applied Statistics) - Department of
Statistics and Information, Federal Rural University of Pernambuco, Recife,
Pernambuco, 2015 (available at <http://www.openthesis.org/documents/New-trigonometric-classes-probabilistic-distributions-602633.html>) and BRITO, C. C. R. Method Distributions generator and
Probability Distributions Classes. 241 p. Thesis (Doctorate in Biometry and
Applied Statistics) - Department of Statistics and Information, Federal Rural
University of Pernambuco, Recife, Pernambuco, 2014 (available upon request).
Author: Luciano Souza <lcnsza@gmail.com>, Lucas Gallindo <lgallindo@gmail.com>, Luciano Serafim de Souza <lucianoserafimdesouza@gmail.com>
Maintainer: Lucas Gallindo <lgallindo@gmail.com>
Diff between SecKW versions 0.1 dated 2016-07-17 and 0.2 dated 2016-07-18
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/hseckw.R | 2 +- R/pseckw.R | 2 +- R/qseckw.R | 2 +- R/rseckw.R | 4 ++-- R/sseckw.R | 4 ++-- README.md | 11 ++++++++++- man/hseckw.Rd | 2 +- man/pseckw.Rd | 4 ++-- man/qseckw.Rd | 4 ++-- man/rseckw.Rd | 6 +++--- man/sseckw.Rd | 6 +++--- 13 files changed, 44 insertions(+), 35 deletions(-)
Title: Parametric Regression for Discrete Response
Description: Regression for a discrete response, where the conditional distribution is modelled via a discrete Weibull distribution.
Author: Veronica Vinciotti <veronica.vinciotti@brunel.ac.uk>
Maintainer: Veronica Vinciotti<veronica.vinciotti@brunel.ac.uk>
Diff between DWreg versions 1.0 dated 2015-12-09 and 2.0 dated 2016-07-18
DESCRIPTION | 10 ++-- MD5 | 12 ++-- NAMESPACE | 6 +- R/dw.reg.R | 144 ++++++++++++++++++++++++++++++++++------------------------ R/res.dw.R |only man/dw.Rd | 76 +++++++++++++++--------------- man/dw.reg.Rd | 39 +++++++++------ man/res.dw.Rd |only 8 files changed, 162 insertions(+), 125 deletions(-)