Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>
Diff between zoib versions 1.4.0 dated 2016-07-11 and 1.4.1 dated 2016-07-26
DESCRIPTION | 8 +++--- MD5 | 12 ++++----- R/check.psrf.R | 68 ++++++++++++++++++++++++++++++++++++++++++++-------- R/paraplot.R | 9 +++--- man/paraplot.Rd | 11 +++++++- man/zoib-package.Rd | 4 +-- tests/test1.R | 4 +-- 7 files changed, 87 insertions(+), 29 deletions(-)
Title: Bivariate Gaussian Genotype Clustering and Calling for Illumina
Microarrays
Description: Bivariate Gaussian genotype clustering and calling for Illumina
microarrays, building on the package 'mclust'. Pronounced snip-em-clust.
Author: Stephen W. Erickson and Joshua C. Callaway
Maintainer: Joshua C. Callaway <joshcllw@gmail.com>
Diff between SNPMClust versions 1.2 dated 2016-03-28 and 1.3 dated 2016-07-26
DESCRIPTION | 20 ++++++++++---------- MD5 | 17 +++++++++-------- NAMESPACE | 2 +- R/generatepriors.R | 6 +++--- R/prepdata.R | 6 +++--- inst |only man/generatepriors.Rd | 3 ++- man/prepdata.Rd | 3 ++- man/snpmclust.Rd | 8 ++++---- man/testset.Rd | 1 + 10 files changed, 35 insertions(+), 31 deletions(-)
Title: Nonlinear Calibration
Description: Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex.
Author: Youyi Fong <yfong@fhcrc.org>, Krisztian Sebestyen <ksebestyen@gmail.com>, Xuesong Yu <xyu@scharp.org>
Maintainer: Youyi Fong <yfong@fhcrc.org>
Diff between nCal versions 2015.3-3 dated 2015-03-04 and 2016.7-26 dated 2016-07-26
nCal-2015.3-3/nCal/vignettes/figure |only nCal-2016.7-26/nCal/DESCRIPTION | 8 +- nCal-2016.7-26/nCal/MD5 | 42 +++++----- nCal-2016.7-26/nCal/NAMESPACE | 11 ++ nCal-2016.7-26/nCal/R/5pl_parameterization_calculus.R | 4 - nCal-2016.7-26/nCal/R/crm.fit.R | 40 +++++++++- nCal-2016.7-26/nCal/R/glspl.R | 71 ++++++++++-------- nCal-2016.7-26/nCal/build/vignette.rds |binary nCal-2016.7-26/nCal/data/dat.QIL3.rda |binary nCal-2016.7-26/nCal/inst/doc/desktop.ini |only nCal-2016.7-26/nCal/inst/doc/nCal-vignette.Rnw | 2 nCal-2016.7-26/nCal/inst/doc/nCal-vignette.pdf |binary nCal-2016.7-26/nCal/inst/jags_script/desktop.ini |only nCal-2016.7-26/nCal/inst/misc/desktop.ini |only nCal-2016.7-26/nCal/inst/otherTests/desktop.ini |only nCal-2016.7-26/nCal/inst/unitTests/desktop.ini |only nCal-2016.7-26/nCal/inst/unitTests/runit.ncal.R | 12 ++- nCal-2016.7-26/nCal/man/crm.fit.Rd | 7 + nCal-2016.7-26/nCal/man/dat.QIL3.Rd | 4 + nCal-2016.7-26/nCal/man/plot5PL.Rd | 2 nCal-2016.7-26/nCal/vignettes/nCal-vignette.Rnw | 2 nCal-2016.7-26/nCal/vignettes/nCal-vignette.bib | 8 +- 22 files changed, 141 insertions(+), 72 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Pacote para analise multivariada, que possui funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise de cluster hierarquico e nao hierarquico, regressao linear, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos. Tambem possui outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@dex.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 1.9.2 dated 2016-07-17 and 1.9.3 dated 2016-07-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/Plot.Regressao.R | 29 +++++++++++++++-------------- R/Regressao.R | 36 ++++++++++++++++++------------------ man/MVar.pt-package.Rd | 4 ++-- man/Regressao.Rd | 8 ++++---- 6 files changed, 48 insertions(+), 47 deletions(-)
Title: Spatial Interpolation by Inverse Path Distance Weighting
Description: Functions are provided to interpolate georeferenced point data via
Inverse Path Distance Weighting. Useful for coastal marine applications where
barriers in the landscape preclude interpolation with Euclidean distances.
Author: Joseph Stachelek <stachel2@msu.edu>
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between ipdw versions 0.2-4 dated 2016-03-03 and 0.2-5 dated 2016-07-26
DESCRIPTION | 10 ++++---- MD5 | 28 +++++++++++++----------- R/costrasterGen.R | 11 +++++---- R/errorGen.R | 9 +++++-- R/ipdw.R | 11 ++++++--- R/ipdwInterp.R | 33 +++++++++++++++++++--------- R/pathdistGen.R | 41 ++++++++++++++++++++++-------------- R/pathdistGen_parallel.R | 2 - README.md | 3 +- build/vignette.rds |binary tests/testthat.R | 2 - tests/testthat/Rplots.pdf |only tests/testthat/test-costrasterGen.R | 4 ++- tests/testthat/test-errorGen.R |only tests/testthat/test-ipdwInterp.R | 21 ++++++++++++++---- tests/testthat/test-pathdistGen.R | 5 ++-- 16 files changed, 113 insertions(+), 67 deletions(-)
Title: Raster Image Processing and Vector Recognition
Description: If there is a need to recognise edges on a raster image or a bitmap or any kind of a matrix, one can find packages
that does only 90 degrees vectorization. Typically the nature of artefact images is linear and can be vectorized in much more
efficient way than draw a series of 90 degrees lines. The fasteraster package does recognition of lines using only one pass.
Author: Andy Bosyi
Maintainer: Andy Bosyi <andy@bosyi.com>
Diff between fasteraster versions 1.0 dated 2016-07-21 and 1.0.4 dated 2016-07-26
DESCRIPTION | 11 ++-- MD5 | 11 ++-- R/RcppExports.R | 4 + man/raster2vector.Rd | 2 src/raster2vector.cpp | 111 +++++++++++++++++++++++++++----------------------- tests/dem5 |only tests/raster2vector.R | 29 ++++--------- 7 files changed, 86 insertions(+), 82 deletions(-)
Title: Translate Spreadsheet Cell Ranges to Rows and Columns
Description: Helper functions to work with spreadsheets and the "A1:D10" style
of cell range specification.
Author: Jennifer Bryan [cre, aut],
Hadley Wickham [ctb]
Maintainer: Jennifer Bryan <jenny@stat.ubc.ca>
Diff between cellranger versions 1.0.0 dated 2015-06-20 and 1.1.0 dated 2016-07-26
cellranger-1.0.0/cellranger/man/A1_to_RC.Rd |only cellranger-1.0.0/cellranger/man/RC_to_A1.Rd |only cellranger-1.0.0/cellranger/man/letter_to_num.Rd |only cellranger-1.0.0/cellranger/man/num_to_letter.Rd |only cellranger-1.1.0/cellranger/DESCRIPTION | 15 cellranger-1.1.0/cellranger/LICENSE | 2 cellranger-1.1.0/cellranger/MD5 | 65 ++- cellranger-1.1.0/cellranger/NAMESPACE | 38 + cellranger-1.1.0/cellranger/NEWS.md |only cellranger-1.1.0/cellranger/R/A1-R1C1-regex-utils.R |only cellranger-1.1.0/cellranger/R/A1-to-from-RC.R | 199 ++++------ cellranger-1.1.0/cellranger/R/anchor.R | 4 cellranger-1.1.0/cellranger/R/cell-addr.R |only cellranger-1.1.0/cellranger/R/cell-limits.R | 156 ++++--- cellranger-1.1.0/cellranger/R/letter-to-from-num.R |only cellranger-1.1.0/cellranger/R/ra-ref.R |only cellranger-1.1.0/cellranger/R/to-string.R |only cellranger-1.1.0/cellranger/R/utils.R | 60 ++- cellranger-1.1.0/cellranger/README.md | 167 ++++---- cellranger-1.1.0/cellranger/build |only cellranger-1.1.0/cellranger/inst |only cellranger-1.1.0/cellranger/man/A1_to_R1C1.Rd |only cellranger-1.1.0/cellranger/man/R1C1_to_A1.Rd |only cellranger-1.1.0/cellranger/man/addr_col.Rd |only cellranger-1.1.0/cellranger/man/addr_row.Rd |only cellranger-1.1.0/cellranger/man/anchored.Rd | 9 cellranger-1.1.0/cellranger/man/as.cell_addr.Rd |only cellranger-1.1.0/cellranger/man/as.ra_ref.Rd |only cellranger-1.1.0/cellranger/man/as.range.Rd | 28 + cellranger-1.1.0/cellranger/man/cell_addr.Rd |only cellranger-1.1.0/cellranger/man/cell_cols.Rd | 5 cellranger-1.1.0/cellranger/man/cell_limits.Rd | 66 ++- cellranger-1.1.0/cellranger/man/cell_rows.Rd | 5 cellranger-1.1.0/cellranger/man/cellranger.Rd | 2 cellranger-1.1.0/cellranger/man/guess_fo.Rd |only cellranger-1.1.0/cellranger/man/is_A1.Rd |only cellranger-1.1.0/cellranger/man/letter-num-conversion.Rd |only cellranger-1.1.0/cellranger/man/print.ra_ref.Rd |only cellranger-1.1.0/cellranger/man/ra_ref.Rd |only cellranger-1.1.0/cellranger/man/to_string.Rd |only cellranger-1.1.0/cellranger/tests/testthat/reference |only cellranger-1.1.0/cellranger/tests/testthat/test-A1-R1C1-conversion.R |only cellranger-1.1.0/cellranger/tests/testthat/test-A1-R1C1-utils.R |only cellranger-1.1.0/cellranger/tests/testthat/test-cell-addr-class.R |only cellranger-1.1.0/cellranger/tests/testthat/test-cell-specification.R | 108 +---- cellranger-1.1.0/cellranger/tests/testthat/test-letter-number-conversion.R |only cellranger-1.1.0/cellranger/tests/testthat/test-ra-ref-class.R |only cellranger-1.1.0/cellranger/vignettes |only 48 files changed, 521 insertions(+), 408 deletions(-)
Title: High Frequency Price Estimators by PortfolioEffect
Description: R interface to PortfolioEffect cloud service for estimating
high frequency price variance, quarticity, microstructure noise variance,
and other metrics in both aggregate and rolling window flavors.
Constructed estimators could use client-side market data or access
HF intraday price history for all major US Equities.
See https://www.portfolioeffect.com/ for more information on the
PortfolioEffect high frequency portfolio analytics platform.
Author: Andrey Kostin [aut, cre],
Aleksey Zemnitskiy [aut],
Oleg Nechaev [aut]
Maintainer: Andrey Kostin <andrey.kostin@portfolioeffect.com>
Diff between PortfolioEffectEstim versions 1.2 dated 2016-02-04 and 1.3 dated 2016-07-26
PortfolioEffectEstim-1.2/PortfolioEffectEstim/vignettes/img |only PortfolioEffectEstim-1.3/PortfolioEffectEstim/DESCRIPTION | 8 PortfolioEffectEstim-1.3/PortfolioEffectEstim/MD5 | 12 PortfolioEffectEstim-1.3/PortfolioEffectEstim/NEWS | 43 - PortfolioEffectEstim-1.3/PortfolioEffectEstim/inst/doc/PortfolioEffectEstim.Rnw | 337 ++++++++-- PortfolioEffectEstim-1.3/PortfolioEffectEstim/inst/doc/PortfolioEffectEstim.pdf |binary PortfolioEffectEstim-1.3/PortfolioEffectEstim/vignettes/PortfolioEffectEstim.Rnw | 337 ++++++++-- 7 files changed, 628 insertions(+), 109 deletions(-)
More information about PortfolioEffectEstim at CRAN
Permanent link
Title: Colour Palettes for Data
Description: Colour palettes for data, based on some well known public data
sets.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between palr versions 0.0-4 dated 2015-06-11 and 0.0.6 dated 2016-07-26
palr-0.0-4/palr/inst/extdata |only palr-0.0.6/palr/DESCRIPTION | 18 - palr-0.0.6/palr/MD5 | 46 ++- palr-0.0.6/palr/NAMESPACE | 8 palr-0.0.6/palr/NEWS | 14 + palr-0.0.6/palr/R/bathy.R |only palr-0.0.6/palr/R/elemenPal.R |only palr-0.0.6/palr/R/palr-package.r |only palr-0.0.6/palr/R/palr.R | 437 ++++++++++++++++++++++---------- palr-0.0.6/palr/R/timePal.R |only palr-0.0.6/palr/R/utils.R |only palr-0.0.6/palr/README.md |only palr-0.0.6/palr/build/vignette.rds |binary palr-0.0.6/palr/data |only palr-0.0.6/palr/inst/doc/nasa_chla.R |only palr-0.0.6/palr/inst/doc/nasa_chla.Rmd |only palr-0.0.6/palr/inst/doc/nasa_chla.html |only palr-0.0.6/palr/inst/doc/palr.R | 3 palr-0.0.6/palr/inst/doc/palr.Rmd | 5 palr-0.0.6/palr/inst/doc/palr.html | 148 +++++----- palr-0.0.6/palr/man/bathyDeepPal.Rd |only palr-0.0.6/palr/man/chlPal.Rd | 2 palr-0.0.6/palr/man/col2hex.Rd | 2 palr-0.0.6/palr/man/icePal.Rd | 14 - palr-0.0.6/palr/man/mk_timePal.Rd |only palr-0.0.6/palr/man/oisst.Rd |only palr-0.0.6/palr/man/palr.Rd | 4 palr-0.0.6/palr/man/sstPal.Rd | 8 palr-0.0.6/palr/tests |only palr-0.0.6/palr/vignettes/nasa_chla.Rmd |only palr-0.0.6/palr/vignettes/palr.Rmd | 5 31 files changed, 469 insertions(+), 245 deletions(-)
Title: Latent Structure Learning
Description: Conduct structural equation modeling via penalized likelihood.
Author: Po-Hsien Huang [aut, cre]
Maintainer: Po-Hsien Huang <psyphh@gmail.com>
Diff between lsl versions 0.5.1 dated 2015-12-01 and 0.5.5 dated 2016-07-26
DESCRIPTION | 10 MD5 | 12 NAMESPACE | 1 R/lslSEM.R | 1502 ++++++++++----------------------------------------- R/lslSEM_method.R |only R/lslSEM_optimizer.R |only R/lslSEM_tool.R |only R/lsl_tool.R |only man/lslSEM-class.Rd | 305 +++------- 9 files changed, 420 insertions(+), 1410 deletions(-)
Title: Joint Analysis of Genotype and Group-Specific Variability Using
a Novel Score Test Approach to Map Expression Quantitative
Trait Loci (eQTL)
Description: Implements a novel score test that measures 1) the overall shift in the gene expression due to genotype (additive genetic effect), and 2) group-specific changes in gene expression due to genotype (interaction effect) in a mixed-effects model framework.
Author: Chaitanya R. Acharya and Andrew S. Allen
Maintainer: Chaitanya Acharya <c.acharya@duke.edu>
Diff between JAGUAR versions 3.0.0 dated 2015-09-24 and 3.0.1 dated 2016-07-26
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- R/JAGUAR.R | 5 +++-- data/jaguar_example.rda |binary man/GENEapply.Rd | 2 +- man/JAGUAR-package.Rd | 10 ++++------ man/cis_eqtl.Rd | 2 +- man/jagSIM.Rd | 2 +- man/jag_fun.Rd | 2 +- man/jaguar_cis.Rd | 6 ++---- man/jaguar_gwa.Rd | 6 ++---- man/jaguar_plotqtl.Rd | 6 ++---- man/jaguar_process.Rd | 6 ++---- man/jaguar_slice.Rd | 6 +++--- man/rowsumscpp.Rd | 2 +- man/vcSIM.Rd | 2 +- src/jaguar.cpp | 4 ++-- 17 files changed, 46 insertions(+), 55 deletions(-)
Title: Lightweight GitHub Package Installer
Description: A lightweight, vectorized drop-in replacement for 'devtools::install_github()' that uses native git and R methods to clone and install a package from GitHub.
Author: Thomas J. Leeper [aut, cre]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between ghit versions 0.2.5 dated 2016-03-15 and 0.2.10 dated 2016-07-26
ghit-0.2.10/ghit/DESCRIPTION | 12 +-- ghit-0.2.10/ghit/MD5 | 22 +++--- ghit-0.2.10/ghit/NAMESPACE | 2 ghit-0.2.10/ghit/NEWS | 22 ++++++ ghit-0.2.10/ghit/R/add_metadata.R |only ghit-0.2.10/ghit/R/checkout_github.R |only ghit-0.2.10/ghit/R/install.R | 76 +++++++++++++++--------- ghit-0.2.10/ghit/R/msg.R |only ghit-0.2.10/ghit/R/parse_reponame.R | 5 + ghit-0.2.10/ghit/README.md | 18 ++--- ghit-0.2.10/ghit/man/install.Rd | 10 +-- ghit-0.2.10/ghit/tests/testthat/test_install.R | 32 +++++++--- ghit-0.2.10/ghit/tests/testthat/test_internal.R | 45 ++++++-------- ghit-0.2.5/ghit/R/checkout_pkg.R |only 14 files changed, 156 insertions(+), 88 deletions(-)
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with
spatially correlated errors by robust and Gaussian (Restricted)
Maximum Likelihood and for computing robust and customary point
and block external-drift kriging predictions, along with utility
functions for variogram modelling in ad-hoc geostatistical analyses,
model building, model evaluation by cross-validation and for
unbiased back-transformation of kriging predictions of
log-transformed data.
Author: Andreas Papritz [cre, aut],
Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
Diff between georob versions 0.2-3 dated 2016-03-02 and 0.2-4 dated 2016-07-26
ChangeLog | 43 ++ DESCRIPTION | 10 MD5 | 69 ++-- NAMESPACE | 11 NEWS | 3 R/georob.S3methods.R | 697 +++++++++++++++++++++++------------------- R/georob.cv.R | 67 ++-- R/georob.exported.functions.R | 133 +++----- R/georob.lgnpp.R | 2 R/georob.predict.R | 113 ++++-- R/georob.private.functions.R | 141 +++++--- R/variogram.R | 6 build |only inst |only man/S3methods.georob.Rd | 12 man/compress.Rd | 5 man/control.georob.Rd | 204 ++++++++---- man/cv.georob.Rd | 40 +- man/fit.variogram.model.Rd | 20 - man/georob-package.Rd | 73 ++-- man/georob.Rd | 122 ++++--- man/georobModelBuilding.Rd | 42 +- man/georobObject.Rd | 22 - man/internal.functions.Rd | 8 man/lgnpp.Rd | 132 ++++--- man/param.defaults.Rd | 10 man/param.names.Rd | 4 man/plot.georob.Rd | 12 man/pmm.Rd | 56 +-- man/predict.georob.Rd | 45 +- man/profilelogLik.Rd | 24 - man/sample.variogram.Rd | 10 man/validate.predictions.Rd | 66 ++- vignettes |only 34 files changed, 1290 insertions(+), 912 deletions(-)
Title: Exploration and Graphics for RivEr Trends (EGRET)
Description: Statistics and graphics for streamflow history,
water quality trends, and the statistical modeling algorithm: Weighted
Regressions on Time, Discharge, and Season (WRTDS).
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between EGRET versions 2.4.3 dated 2016-03-04 and 2.6.0 dated 2016-07-26
EGRET-2.4.3/EGRET/inst/extdata/James.rds |only EGRET-2.4.3/EGRET/inst/extdata/Susquehanna.rds |only EGRET-2.4.3/EGRET/man/Choptank_eList.Rd |only EGRET-2.6.0/EGRET/DESCRIPTION | 10 +- EGRET-2.6.0/EGRET/MD5 | 97 +++++++++++----------- EGRET-2.6.0/EGRET/NAMESPACE | 2 EGRET-2.6.0/EGRET/NEWS | 13 +++ EGRET-2.6.0/EGRET/R/EGRET.R | 7 + EGRET-2.6.0/EGRET/R/boxConcThree.R | 5 - EGRET-2.6.0/EGRET/R/boxResidMonth.R | 21 ++-- EGRET-2.6.0/EGRET/R/fluxBiasEight.R | 15 +-- EGRET-2.6.0/EGRET/R/fluxBiasStat.R | 4 EGRET-2.6.0/EGRET/R/generalAxis.R | 2 EGRET-2.6.0/EGRET/R/makeAnnualSeries.R | 74 +++++++---------- EGRET-2.6.0/EGRET/R/makeRandomResiduals.R | 42 +++++---- EGRET-2.6.0/EGRET/R/multiPlotDataOverview.R | 14 +-- EGRET-2.6.0/EGRET/R/plotConcHist.R | 3 EGRET-2.6.0/EGRET/R/plotConcPred.R | 52 ++++++++---- EGRET-2.6.0/EGRET/R/plotConcQ.R | 62 +++++++++----- EGRET-2.6.0/EGRET/R/plotConcTime.R | 93 +++++++++++++++------ EGRET-2.6.0/EGRET/R/plotConcTimeDaily.R | 80 +++++++++++------- EGRET-2.6.0/EGRET/R/plotFluxPred.R | 52 ++++++++---- EGRET-2.6.0/EGRET/R/plotFluxTimeDaily.R | 18 ++-- EGRET-2.6.0/EGRET/R/plotQTimeDaily.R | 18 ++-- EGRET-2.6.0/EGRET/R/plotResidPred.R | 55 ++++++------ EGRET-2.6.0/EGRET/R/plotResidQ.R | 55 ++++++------ EGRET-2.6.0/EGRET/R/plotResidTime.R | 51 ++++++----- EGRET-2.6.0/EGRET/R/readNWISDaily.r | 25 ++++- EGRET-2.6.0/EGRET/R/readNWISSample.r | 29 +++++- EGRET-2.6.0/EGRET/R/readWQPSample.R | 41 ++++++--- EGRET-2.6.0/EGRET/README.md | 107 ++++++++++--------------- EGRET-2.6.0/EGRET/build/vignette.rds |binary EGRET-2.6.0/EGRET/data/Arkansas_eList.RData |only EGRET-2.6.0/EGRET/data/datalist |only EGRET-2.6.0/EGRET/inst/doc/EGRET.pdf |binary EGRET-2.6.0/EGRET/inst/doc/rResid.R |only EGRET-2.6.0/EGRET/inst/doc/rResid.Rmd |only EGRET-2.6.0/EGRET/inst/doc/rResid.html |only EGRET-2.6.0/EGRET/man/boxResidMonth.Rd | 4 EGRET-2.6.0/EGRET/man/fluxBiasMulti.Rd | 6 - EGRET-2.6.0/EGRET/man/generalAxis.Rd | 2 EGRET-2.6.0/EGRET/man/makeAugmentedSample.Rd |only EGRET-2.6.0/EGRET/man/multiPlotDataOverview.Rd | 4 EGRET-2.6.0/EGRET/man/plotConcPred.Rd | 5 - EGRET-2.6.0/EGRET/man/plotConcQ.Rd | 8 + EGRET-2.6.0/EGRET/man/plotConcTime.Rd | 16 ++- EGRET-2.6.0/EGRET/man/plotConcTimeDaily.Rd | 16 ++- EGRET-2.6.0/EGRET/man/plotFluxPred.Rd | 4 EGRET-2.6.0/EGRET/man/plotFluxTimeDaily.Rd | 8 - EGRET-2.6.0/EGRET/man/plotQTimeDaily.Rd | 10 +- EGRET-2.6.0/EGRET/man/plotResidPred.Rd | 5 - EGRET-2.6.0/EGRET/man/plotResidQ.Rd | 4 EGRET-2.6.0/EGRET/man/plotResidTime.Rd | 4 EGRET-2.6.0/EGRET/man/sampleData.Rd |only EGRET-2.6.0/EGRET/vignettes/rResid.Rmd |only 55 files changed, 672 insertions(+), 471 deletions(-)
Title: Planning and Analyzing Dose Finding Experiments
Description: The DoseFinding package provides functions for the design and analysis
of dose-finding experiments (with focus on pharmaceutical Phase
II clinical trials). It provides functions for: multiple contrast
tests, fitting non-linear dose-response models (using Bayesian and
non-Bayesian estimation), calculating optimal designs and an
implementation of the MCPMod methodology.
Author: Bjoern Bornkamp, Jose Pinheiro, Frank Bretz
Maintainer: Bjoern Bornkamp <bbnkmp@gmail.com>
Diff between DoseFinding versions 0.9-14 dated 2016-02-02 and 0.9-15 dated 2016-07-26
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/Mods.R | 29 +++++++++++++++++++---------- man/DoseFinding-package.Rd | 4 ++-- man/powMCT.Rd | 2 ++ 6 files changed, 36 insertions(+), 21 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from the
National Water Information System (NWIS) tools. Both EPA and USGS water
quality data are obtained from the Water Quality Portal.
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut],
Jordan Read [ctb],
Lindsay Carr [ctb],
David Watkins [ctb]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.5.5 dated 2016-04-20 and 2.5.10 dated 2016-07-26
DESCRIPTION | 15 +- MD5 | 77 ++++++------ NAMESPACE | 7 - NEWS | 4 R/constructNWISURL.r | 77 +++++++++++- R/getWebServiceData.R | 31 ++++ R/importRDB1.r | 19 +-- R/importWQP.R | 7 - R/importWaterML2.r | 19 ++- R/readNWISdata.r | 118 ++++++++++++++---- R/readNWISpCode.r | 36 +++-- R/readNWISsite.r | 6 R/readNWISunit.r | 196 ++++++++++++++++++++++++++++--- R/readWQPdata.R | 100 ++++++++------- R/readWQPqw.r | 122 ++++++++++--------- R/setAccess.R | 13 +- R/sysdata.rda |binary R/whatNWISData.r | 2 R/whatNWISsites.R | 2 R/zeroPad.r | 17 ++ README.md | 61 +++------ build/vignette.rds |binary inst/doc/dataRetrieval.Rnw | 2 inst/doc/dataRetrieval.pdf |binary man/constructNWISURL.Rd | 13 +- man/constructUseURL.Rd |only man/countyCdLookup.Rd |only man/getQuerySummary.Rd |only man/getWebServiceData.Rd | 2 man/readNWISdata.Rd | 26 +++- man/readNWISgwl.Rd | 6 man/readNWISpCode.Rd | 1 man/readNWISstat.Rd |only man/readNWISuse.Rd |only man/readWQPdata.Rd | 7 - man/readWQPqw.Rd | 10 + man/stateCdLookup.Rd | 1 man/zeroPad.Rd | 2 tests/testthat/tests_general.R | 53 +++++++- tests/testthat/tests_imports.R | 35 ++++- tests/testthat/tests_userFriendly_fxns.R | 67 ++++++++++ vignettes/dataRetrieval.Rnw | 4 42 files changed, 859 insertions(+), 299 deletions(-)
Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of Rd objects, including
function reprompt() for updating existing Rd
documentation for functions, methods and classes and
function rebib() for import of references from 'bibtex'
files. There is also a macro for importing 'bibtex'
references which an be used in Rd files and 'roxygen'
comments without importing this package.
Author: Georgi N. Boshnakov
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 0.4-18 dated 2015-07-15 and 0.4-20 dated 2016-07-26
Rdpack-0.4-18/Rdpack/TODO |only Rdpack-0.4-20/Rdpack/DESCRIPTION | 21 ++++++++++------- Rdpack-0.4-20/Rdpack/MD5 | 22 +++++++++++------- Rdpack-0.4-20/Rdpack/NAMESPACE | 1 Rdpack-0.4-20/Rdpack/NEWS | 21 ++++++++++++++++- Rdpack-0.4-20/Rdpack/R/bib.R | 34 ++++++++++++++++++++++++++--- Rdpack-0.4-20/Rdpack/build/partial.rdb |binary Rdpack-0.4-20/Rdpack/build/vignette.rds |only Rdpack-0.4-20/Rdpack/inst/REFERENCES.bib | 8 +++--- Rdpack-0.4-20/Rdpack/inst/auto |only Rdpack-0.4-20/Rdpack/inst/doc |only Rdpack-0.4-20/Rdpack/man/Rdpack-package.Rd | 25 +++++++++++---------- Rdpack-0.4-20/Rdpack/man/insert_ref.Rd |only Rdpack-0.4-20/Rdpack/man/macros |only Rdpack-0.4-20/Rdpack/vignettes |only 15 files changed, 94 insertions(+), 38 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Description: Provides tools to generate an HTML interface for creating adaptive
and non-adaptive educational and psychological tests using the shiny
package. Suitable for applying unidimensional and multidimensional
computerized adaptive tests using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Package also contains tools useful for performing Monte Carlo simulations
for studying the behaviour of computerized adaptive test banks.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirtCAT versions 0.9 dated 2016-06-24 and 1.0 dated 2016-07-26
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- R/createShinyGUI.R | 6 ++++++ R/mirtCAT-package.R | 6 ++++++ R/mirtCAT.R | 6 ++++++ R/mirtCAT_preamble.R | 6 ++++++ build/vignette.rds |binary inst/CITATION |only man/createShinyGUI.Rd | 5 +++++ man/mirtCAT-package.Rd | 5 +++++ man/mirtCAT.Rd | 5 +++++ man/mirtCAT_preamble.Rd | 5 +++++ 12 files changed, 59 insertions(+), 14 deletions(-)
Title: Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups
in a Phylogeny
Description: Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.
Author: Orlando Schwery
Maintainer: Orlando Schwery <oschwery@vols.utk.edu>
Diff between MonoPhy versions 1.1 dated 2016-03-11 and 1.2 dated 2016-07-26
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- inst/CITATION |only inst/doc/MonoPhyVignette.html | 4 ++-- 4 files changed, 9 insertions(+), 8 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly
configurable drop-in replacements for base url() and download.file() with
better performance, support for encryption (https, ftps), gzip compression,
authentication, and other libcurl goodies. The core of the package implements a
framework for performing fully customized requests where data can be processed
either in memory, on disk, or streaming via the callback or connection
interfaces. Some knowledge of libcurl is recommended; for a more-user-friendly
web client see the 'httr' package which builds on this package with http
specific tools and logic.
Author: Jeroen Ooms [cre, aut],
Hadley Wickham [ctb],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between curl versions 1.0 dated 2016-07-23 and 1.1 dated 2016-07-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ src/curl.c | 8 ++++---- vignettes/intro.Rmd | 6 ++---- 5 files changed, 16 insertions(+), 15 deletions(-)
Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. It's called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identifying structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Diff between ChannelAttribution versions 1.7 dated 2016-07-19 and 1.8 dated 2016-07-26
DESCRIPTION | 8 +-- MD5 | 6 +- man/ChannelAttribution-package.Rd | 4 - src/ChannelAttribution.cpp | 86 ++++++++++++++++++++------------------ 4 files changed, 56 insertions(+), 48 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Infrastructure for Psychometric Modeling
Description: Infrastructure for psychometric modeling such as data classes
(for item response data and paired comparisons), basic model fitting
functions (for Bradley-Terry, Rasch, partial credit, rating scale,
multinomial processing tree models), extractor functions for different types
of parameters (item, person, threshold, discrimination), unified inference
and visualizations, and various datasets for illustration. Intended as a
common lightweight and efficient toolbox for psychometric modeling and a
common building block for fitting psychometric mixture models in package
"psychomix" and psychometric tree models in package "psychotree".
Author: Achim Zeileis [aut, cre],
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Basil Abou El-Komboz [aut],
Julia Kopf [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between psychotools versions 0.4-0 dated 2015-01-19 and 0.4-1 dated 2016-07-26
DESCRIPTION | 12 +++--- MD5 | 64 +++++++++++++++++--------------- NAMESPACE | 14 +++++++ NEWS | 9 ++++ R/graphics.R | 5 +- R/mptmodel.R | 61 ++++++++++++++++++++++-------- build |only data/FirstNames.rda |binary data/GermanParties2009.rda |binary data/MathExam14W.rda |only data/MemoryDeficits.rda |binary data/SoundQuality.rda |binary data/SourceMonitoring.rda |binary data/StereotypeThreat.rda |binary data/VerbalAggression.rda |binary data/YouthGratitude.rda |binary inst |only man/FirstNames.Rd | 16 ++++---- man/GermanParties2009.Rd | 4 -- man/MathExam14W.Rd |only man/MemoryDeficits.Rd | 7 +-- man/SoundQuality.Rd | 24 ++++++------ man/SourceMonitoring.Rd | 13 +++--- man/StereotypeThreat.Rd | 2 - man/YouthGratitude.Rd | 5 +- man/anchor.Rd | 49 +++++++++++++----------- man/anchortest.Rd | 49 ++++++++++++------------ man/elementary_symmetric_functions.Rd | 27 ++++++------- man/pcmodel.Rd | 10 +++-- man/personpar.Rd | 15 ++++--- man/predict.pcmodel.Rd | 12 +++--- man/regionplot.Rd | 12 +++--- man/rsmodel.Rd | 6 +-- man/threshpar.Rd | 7 ++- tests/Examples/psychotools-Ex.Rout.save | 48 ++++++++++++++++++++++-- 35 files changed, 286 insertions(+), 185 deletions(-)
Title: Implementation of 2D Correlation Analysis
Description: Implementation of two-dimensional (2D) correlation analysis based
on the Fourier-transformation approach described by Isao Noda (I. Noda
(1993) <DOI:10.1366/0003702934067694>). Additionally there are two plot
functions for the resulting correlation matrix: The first one creates
colored 2D plots, while the second one generates 3D plots.
Author: Robert Geitner [cre, aut],
Robby Fritzsch [aut],
Thomas Bocklitz [aut],
Juergen Popp [ctb, cph]
Maintainer: Robert Geitner <robert.geitner@uni-jena.de>
Diff between corr2D versions 0.1.9 dated 2016-06-06 and 0.1.10 dated 2016-07-26
DESCRIPTION | 10 ++-- MD5 | 28 ++++++------ NAMESPACE | 1 R/FuranMale.R | 8 +-- R/corr2d.R | 113 +++++++++++++++++++++++-------------------------- R/corr2d_plot.R | 57 ++++++++++++------------ R/sim2ddata.R |only build/vignette.rds |binary inst/doc/corr2D.Rmd | 8 +-- inst/doc/corr2D.html | 12 ++--- man/FuranMale.Rd | 6 +- man/corr2d.Rd | 51 +++++++++++----------- man/plot_corr2d.Rd | 25 +++++----- man/plot_corr2din3d.Rd | 8 +-- man/sim2ddata.Rd |only vignettes/corr2D.Rmd | 8 +-- 16 files changed, 170 insertions(+), 165 deletions(-)
Title: Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Description: Enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine the activity of a site (and as an alternative to the Oxcal function SUM). The package includes a vignette which can be accessed via the vignette.
Author: Andrew Parnell
Maintainer: Andrew Parnell <Andrew.Parnell@ucd.ie>
Diff between Bchron versions 4.2.2 dated 2016-06-21 and 4.2.4 dated 2016-07-26
DESCRIPTION | 8 +- MD5 | 30 +++---- R/BchronCalibrate.R | 2 R/plot.BchronCalibratedDates.R | 11 +- R/plot.BchronRSLRun.R | 157 +++++++++++++++++++++++++++++++++-------- R/predict.BchronologyRun.R | 109 +++++++++++++++++++--------- R/summary.BchronRSLRun.R | 94 ++++++++++++++++++++++-- R/summary.BchronologyRun.R | 37 ++++++++- inst/doc/Bchron.R | 49 +++++++++--- inst/doc/Bchron.Rmd | 54 ++++++++++++-- inst/doc/Bchron.html | 108 ++++++++++++++++------------ man/plot.BchronRSLRun.Rd | 12 +-- man/summary.BchronRSLRun.Rd | 10 ++ man/summary.BchronologyRun.Rd | 18 +++- src/Bchron.c | 51 +++++++------ vignettes/Bchron.Rmd | 54 ++++++++++++-- 16 files changed, 592 insertions(+), 212 deletions(-)
Title: Generates Samples or Complete List of Brazilian IBGE (Instituto
Brasileiro De Geografia e Estatistica) Census Households,
Geocoding it by Google Maps
Description: Generates samples or complete list of Brazilian IBGE (Instituto Brasileiro de Geografia e Estatistica, see
<http://www.ibge.gov.br/> for more information) census
households, geocoding it by Google Maps. The package connects IBGE site and
downloads maps and census data.
Author: Celso Stephan;Ricardo Cordeiro
Maintainer: Celso Stephan <celso.stephan@gmail.com>
Diff between AmostraBrasil versions 1.1 dated 2016-06-15 and 1.2 dated 2016-07-26
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/getIBGEMunSHP.R | 3 ++- 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Estimating the Sizes of Populations at Risk of HIV Infection
from Multiple Data Sources Using a Bayesian Hierarchical Model
Description: This function develops an algorithm for presenting a Bayesian hierarchical model for estimating the sizes of local and national drug injected populations in Bangladesh. The model incorporates multiple commonly used data sources including mapping data, surveys, interventions, capture-recapture data, estimates or guesstimates from organizations, and expert opinion.
Author: Le Bao, Adrian E. Raftery, Kyongwon Kim
Maintainer: Kyongwon Kim<kbk5206@psu.edu>
Diff between SizeEstimation versions 1.1.0 dated 2016-07-13 and 1.1.1 dated 2016-07-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/sizeestima.R | 27 +++++++++++++-------------- man/sizeestima.Rd | 20 ++++++++++---------- 4 files changed, 30 insertions(+), 31 deletions(-)
More information about SizeEstimation at CRAN
Permanent link
Title: Subgroup Identification Based on Differential Effect Search
Description: Provides function to apply "Subgroup Identification based on Differential Effect Search" (SIDES) method proposed by Lipkovich et al. (2011) <doi:10.1002/sim.4289>.
Author: Marie-Karelle Riviere
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between SIDES versions 1.2 dated 2016-07-12 and 1.3 dated 2016-07-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/CROSS_VALIDATION.R | 2 -- R/IDENTIFICATION.R | 36 ++++++++++++++++++++---------------- man/SIDES-package.Rd | 2 +- 5 files changed, 28 insertions(+), 26 deletions(-)
Title: A Parallel Analysis with Polychoric Correlation Matrices
Description: The Function performs a parallel analysis using simulated polychoric correlation matrices. The nth-percentile of the eigenvalues distribution obtained from both the randomly generated and the real data polychoric correlation matrices is returned. A plot comparing the two types of eigenvalues (real and simulated) will help determine the number of real eigenvalues that outperform random data. The function is based on the idea that if real data are non-normal and the polychoric correlation matrix is needed to perform a Factor Analysis, then the Parallel Analysis method used to choose a non-random number of factors should also be based on randomly generated polychoric correlation matrices and not on Pearson correlation matrices. Random data sets are simulated assuming or a uniform or a multinomial distribution or via the bootstrap method of resampling (i.e., random permutations of cases). Also Multigroup Parallel analysis is made available for random (uniform and multinomial distribution and with or without difficulty factor) and bootstrap methods. An option to choose between default or full output is also available as well as a parameter to print Fit Statistics (Chi-squared, TLI, RMSEA, RMR and BIC) for the factor solutions indicated by the Parallel Analysis.
Author: Fabio Presaghi [aut, cre],
Marta Desimoni [ctb]
Maintainer: Fabio Presaghi <fabio.presaghi@uniroma1.it>
Diff between random.polychor.pa versions 1.1.4-1 dated 2014-08-12 and 1.1.4-2 dated 2016-07-26
DESCRIPTION | 23 +++++++++++++---------- MD5 | 14 +++++++------- NAMESPACE | 4 +++- R/random.polychor.pa.r | 10 ++++++---- inst/CITATION | 2 +- man/NEWS.Rd | 6 ++++++ man/random.polychor.pa-package.Rd | 4 ++-- man/random.polychor.pa.Rd | 34 +++++++++++++++++----------------- 8 files changed, 55 insertions(+), 42 deletions(-)
More information about random.polychor.pa at CRAN
Permanent link
Title: Lightweight Data Quality Simulation for Classification
Description: Data quality simulation can be used to check the robustness of data
analysis findings and learn about the impact of data quality contaminations on
classification. This package helps to add contaminations (noise, missing values,
outliers, low variance, irrelevant features, class swap (inconsistency), class
imbalance and decrease in data volume) to data and then evaluate the simulated
data sets for classification accuracy. As a lightweight solution simulation runs
can be set up with no or minimal up-front effort.
Author: Markus Vattulainen [aut, cre]
Maintainer: Markus Vattulainen <markus.vattulainen@gmail.com>
Diff between preprosim versions 0.1.0 dated 2016-05-28 and 0.2.0 dated 2016-07-26
preprosim-0.1.0/preprosim/tests |only preprosim-0.2.0/preprosim/DESCRIPTION | 12 preprosim-0.2.0/preprosim/MD5 | 43 +-- preprosim-0.2.0/preprosim/NAMESPACE | 1 preprosim-0.2.0/preprosim/R/01Classes.R | 14 - preprosim-0.2.0/preprosim/R/03Functions.R | 2 preprosim-0.2.0/preprosim/R/04Preprosim.R | 80 +++--- preprosim-0.2.0/preprosim/R/05ModelFitting.R | 2 preprosim-0.2.0/preprosim/R/06Plotting.R | 35 ++ preprosim-0.2.0/preprosim/build/vignette.rds |binary preprosim-0.2.0/preprosim/inst/doc/preprosim.R | 46 +++ preprosim-0.2.0/preprosim/inst/doc/preprosim.Rmd | 165 +++++++++++-- preprosim-0.2.0/preprosim/inst/doc/preprosim.html | 177 +++++++++++++- preprosim-0.2.0/preprosim/man/changeparam.Rd | 2 preprosim-0.2.0/preprosim/man/getpreprosimdata.Rd | 4 preprosim-0.2.0/preprosim/man/getpreprosimdf.Rd |only preprosim-0.2.0/preprosim/man/newparam.Rd | 2 preprosim-0.2.0/preprosim/man/preprosimanalysis-class.Rd | 4 preprosim-0.2.0/preprosim/man/preprosimdata-class.Rd | 5 preprosim-0.2.0/preprosim/man/preprosimparameter-class.Rd | 4 preprosim-0.2.0/preprosim/man/preprosimplot.Rd | 4 preprosim-0.2.0/preprosim/man/preprosimrun.Rd | 15 - preprosim-0.2.0/preprosim/vignettes/preprosim.Rmd | 165 +++++++++++-- 23 files changed, 642 insertions(+), 140 deletions(-)
Title: Implementation of the 'Lights Out' Puzzle Game
Description: Lights Out is a puzzle game consisting of a grid of lights
that are either on or off. Pressing any light will toggle it and its
adjacent lights. The goal of the game is to switch all the lights off. This
package provides an interface to play the game on different board sizes,
both through the command line or with a visual application. Puzzles can
also be solved using the automatic solver included. View a demo
online at http://daattali.com/shiny/lightsout/.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between lightsout versions 0.2.1 dated 2016-01-06 and 0.3 dated 2016-07-26
DESCRIPTION | 6 ++--- MD5 | 13 ++++++----- NEWS.md |only build/vignette.rds |binary inst/doc/overview.html | 27 ++++++++++++------------ inst/shiny/server.R | 10 ++++----- inst/shiny/ui.R | 52 +++++++++++++++++++++++++++++++++++++---------- inst/shiny/www/style.css | 51 ++++++++++++++++++++++++++++++++++++++++++++++ 8 files changed, 121 insertions(+), 38 deletions(-)
Title: Local Average Response Functions for Instrumental Variable
Estimation of Treatment Effects
Description: Provides instrumental variable estimation of treatment effects when both the endogenous treatment and its instrument are binary. Applicable to both binary and continuous outcomes.
Author: Weihua An and Xuefu Wang, Indiana University Bloomington
Maintainer: Weihua An <weihuaan@indiana.edu>
Diff between LARF versions 1.3 dated 2015-02-09 and 1.4 dated 2016-07-26
DESCRIPTION | 9 +++++---- MD5 | 17 +++++++++-------- NAMESPACE | 4 ++++ R/larf.R | 26 ++++++++++++++++++-------- R/npse.R | 14 +++++++------- inst |only man/cvlm.Rd | 7 ++++--- man/larf.Rd | 14 +++++++------- man/larf.fit.Rd | 2 +- man/npse.Rd | 5 +++-- 10 files changed, 58 insertions(+), 40 deletions(-)