Title: Visualization of Regression Models
Description: Provides a convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R ('lm', 'glm', 'coxph', 'rlm', 'gam', 'locfit', 'randomForest', etc.)
Author: Patrick Breheny, Woodrow Burchett
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between visreg versions 2.2-2 dated 2016-02-06 and 2.3-0 dated 2016-07-29
visreg-2.2-2/visreg/R/plot.visreg.list.R |only visreg-2.2-2/visreg/inst/tests/formulas.R |only visreg-2.2-2/visreg/inst/tests/nonstandard-packages.R |only visreg-2.2-2/visreg/tests |only visreg-2.3-0/visreg/DESCRIPTION | 16 +- visreg-2.3-0/visreg/MD5 | 93 ++++++----- visreg-2.3-0/visreg/NAMESPACE | 4 visreg-2.3-0/visreg/NEWS | 132 +++++++++-------- visreg-2.3-0/visreg/R/Response.R | 24 ++- visreg-2.3-0/visreg/R/Terms.R | 4 visreg-2.3-0/visreg/R/collapseVisregList.R |only visreg-2.3-0/visreg/R/factorPlot.R | 19 +- visreg-2.3-0/visreg/R/ggFactorPlot.R |only visreg-2.3-0/visreg/R/plot.visreg.R | 10 - visreg-2.3-0/visreg/R/plotVisregList.R |only visreg-2.3-0/visreg/R/se.mlm.R | 7 visreg-2.3-0/visreg/R/setupD.R | 6 visreg-2.3-0/visreg/R/setupF.R | 14 + visreg-2.3-0/visreg/R/setupV.R | 8 - visreg-2.3-0/visreg/R/setupX.R | 9 - visreg-2.3-0/visreg/R/visreg.R | 12 - visreg-2.3-0/visreg/R/visregFactorPanel.R | 10 - visreg-2.3-0/visreg/R/visregGGplot.R |only visreg-2.3-0/visreg/R/visregLatticePlot.R | 8 - visreg-2.3-0/visreg/R/visregList.R |only visreg-2.3-0/visreg/R/visregOverlayPlot.R | 25 ++- visreg-2.3-0/visreg/R/visregPanel.R | 2 visreg-2.3-0/visreg/R/visregPlot.R | 10 - visreg-2.3-0/visreg/R/visregPred.R | 7 visreg-2.3-0/visreg/R/visregResid.R | 6 visreg-2.3-0/visreg/README.md | 7 visreg-2.3-0/visreg/build |only visreg-2.3-0/visreg/inst/doc |only visreg-2.3-0/visreg/inst/tests/enhances-betareg.R |only visreg-2.3-0/visreg/inst/tests/enhances-gbm.R |only visreg-2.3-0/visreg/inst/tests/enhances-nnet.R |only visreg-2.3-0/visreg/inst/tests/enhances-quantreg.R |only visreg-2.3-0/visreg/inst/tests/enhances-randomForest.R |only visreg-2.3-0/visreg/inst/tests/enhances-svm.R |only visreg-2.3-0/visreg/inst/tests/ggplot.R |only visreg-2.3-0/visreg/inst/tests/missing-data.R |only visreg-2.3-0/visreg/inst/tests/mixed-models.R | 61 ++++--- visreg-2.3-0/visreg/inst/tests/subset.R | 2 visreg-2.3-0/visreg/inst/tests/unusual-formulas.R |only visreg-2.3-0/visreg/inst/tests/visreg-contrast.R |only visreg-2.3-0/visreg/inst/tests/visreg-coxph.R |only visreg-2.3-0/visreg/inst/tests/visreg-glm.R |only visreg-2.3-0/visreg/inst/tests/visreg-interactions.R |only visreg-2.3-0/visreg/inst/tests/visreg-lm.R |only visreg-2.3-0/visreg/inst/tests/visreg-mlm.R |only visreg-2.3-0/visreg/inst/tests/visreg2d-glm.R |only visreg-2.3-0/visreg/inst/tests/visreg2d-lm.R |only visreg-2.3-0/visreg/man/plot.visreg.Rd | 40 ++--- visreg-2.3-0/visreg/man/visreg.Rd | 47 +++--- visreg-2.3-0/visreg/man/visreg2d.Rd | 3 visreg-2.3-0/visreg/man/visregList.Rd |only visreg-2.3-0/visreg/vignettes |only 57 files changed, 346 insertions(+), 240 deletions(-)
Title: Big Data in-Database Analytics with Teradata Aster
Description: A consistent set of tools to perform in-database analytics
on Teradata Aster Big Data Discovery Platform. toaster (a.k.a 'to Aster')
embraces simple 2-step approach: compute in Aster - visualize and analyze
in R. Its `compute` functions use combination of parallel SQL, SQL-MR and
SQL-GR executing in Aster database - highly scalable parallel
and distributed analytical platform. Then `create` functions visualize
results with boxplots, scatterplots, histograms, heatmaps, word clouds,
maps, networks, or slope graphs. Advanced options such as faceting, coloring,
labeling, and others are supported with most visualizations.
Author: Gregory Kanevsky [aut, cre]
Maintainer: Gregory Kanevsky <gregory.kanevsky@teradata.com>
Diff between toaster versions 0.5.1 dated 2016-03-23 and 0.5.2 dated 2016-07-29
DESCRIPTION | 28 +- MD5 | 81 +++--- NAMESPACE | 8 NEWS | 51 ++++ R/computeCorrelations.R | 67 ++++- R/computeGraph.R | 92 ++++--- R/computeGraphClusters.R |only R/computeHeatmap.R | 9 R/computeSample.R | 149 ++++++++++- R/misc.R | 66 ++++- R/plotting.R | 126 ++++----- R/showData.R | 35 ++ R/toaster.R | 2 R/utils.R | 254 ++++++++++++++++---- R/validateGraph.R |only README.md | 2 man/computeCorrelations.Rd | 18 + man/computeGraph.Rd | 5 man/computeGraphClusters.Rd |only man/computeGraphClustersAsGraphs.Rd |only man/computeHeatmap.Rd | 3 man/computeSample.Rd | 102 ++++++-- man/createBoxplot.Rd | 10 man/createBubblechart.Rd | 8 man/createHeatmap.Rd | 14 - man/createHistogram.Rd | 14 - man/createPopPyramid.Rd | 9 man/createSlopegraph.Rd | 34 +- man/getArbitraryPrecisionTypes.Rd |only man/getFloatingPointTypes.Rd |only man/getIntegerTypes.Rd |only man/getNumericTypes.Rd | 4 man/getTableCounts.Rd |only man/showData.Rd | 6 man/theme_empty.Rd | 3 man/toaGraph.Rd | 6 man/validateGraph.Rd |only tests/testthat/test-computeCorrelations.R | 38 ++- tests/testthat/test-computeGraph.R | 49 ++- tests/testthat/test-computeGraphClusters.R |only tests/testthat/test-computeGraphHistogram.R | 17 - tests/testthat/test-computeHeatmap.R | 24 - tests/testthat/test-computeSample.R | 353 +++++++++++++++++++++++++++- tests/testthat/test-misc.R | 31 +- tests/testthat/test-showData.R | 2 tests/testthat/test-utils.R | 57 ++++ tests/testthat/test-validateGraph.R |only 47 files changed, 1397 insertions(+), 380 deletions(-)
Title: Integrative Clustering of Multiple Genomic Dataset
Description: Carries out integrative clustering analysis using multiple types of genomic dataset.
Author: Prabhakar Chalise, Rama Raghavan, Brooke Fridley
Maintainer: Prabhakar Chalise <pchalise@kumc.edu>
Diff between IntNMF versions 1.0 dated 2016-04-23 and 1.1 dated 2016-07-29
IntNMF-1.0/IntNMF/man/H.fcnnls.Rd |only IntNMF-1.0/IntNMF/man/W.fcnnls.Rd |only IntNMF-1.0/IntNMF/man/adj.cssls.Rd |only IntNMF-1.0/IntNMF/man/logit.Rd |only IntNMF-1.1/IntNMF/DESCRIPTION | 8 - IntNMF-1.1/IntNMF/MD5 | 18 +- IntNMF-1.1/IntNMF/NAMESPACE | 2 IntNMF-1.1/IntNMF/R/W.fcnnls.R | 34 ++--- IntNMF-1.1/IntNMF/R/nmf.mnnals.R | 241 ++++++++++++++++++------------------ IntNMF-1.1/IntNMF/R/nmf.opt.k.R | 137 ++++++++++---------- IntNMF-1.1/IntNMF/man/nmf.mnnals.Rd | 5 IntNMF-1.1/IntNMF/man/nmf.opt.k.Rd | 6 12 files changed, 230 insertions(+), 221 deletions(-)
Title: Simulation of Inter-Related Genomic Datasets
Description: Generates three inter-related genomic datasets : methylation, gene expression and protein expression.
Author: Prabhakar Chalise, Rama Raghavan, Brooke Fridley
Maintainer: Prabhakar Chalise <pchalise@kumc.edu>
Diff between InterSIM versions 2.0 dated 2015-12-14 and 2.1 dated 2016-07-29
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>
Diff between extraDistr versions 1.8.0 dated 2016-07-28 and 1.8.1 dated 2016-07-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 +++++ tests/testthat/test-multivariate-distributions.R | 8 ++++---- 4 files changed, 16 insertions(+), 11 deletions(-)
Title: Mathematical Modeling of Infectious Disease
Description: Tools for simulating mathematical models of infectious disease.
Epidemic model classes include deterministic compartmental models, stochastic
agent-based models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features
an easy API for extending these templates to address novel scientific research aims.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Emily Beylerian [ctb],
Skye Bender-deMoll [ctb],
Kevis Weiss [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between EpiModel versions 1.2.6 dated 2016-05-24 and 1.2.7 dated 2016-07-29
DESCRIPTION | 23 ++++---- MD5 | 104 ++++++++++++++++++------------------ NAMESPACE | 4 + NEWS | 19 ++++++ R/EpiModel-package.r | 15 ++--- R/control.R | 8 +- R/dcm.R | 6 +- R/dendo.R | 14 ++-- R/get.R | 8 +- R/icm.R | 6 +- R/merge.R | 11 +-- R/modules.icm.R | 6 +- R/modules.net.R | 8 +- R/net.utils.R | 8 +- R/netdx.R | 16 ++--- R/netest.R | 8 +- R/netsim.R | 92 +++++++++++++++++--------------- R/param.R | 18 +++--- R/plot.R | 124 ++++++++++---------------------------------- R/shiny.R | 2 R/utils.R | 109 ++++++++++++++++++++++++++++++++++++++ R/verbose.R | 4 - inst/doc/Intro.html | 6 +- man/EpiModel-package.Rd | 14 ++-- man/as.phylo.transmat.Rd | 6 +- man/calc_eql.Rd | 2 man/color_tea.Rd | 2 man/control.icm.Rd | 2 man/control.net.Rd | 6 +- man/dcm.Rd | 6 +- man/dissolution_coefs.Rd | 4 - man/epiweb.Rd | 2 man/get_degree.Rd |only man/get_network.Rd | 2 man/get_nwstats.Rd | 2 man/get_sims.Rd | 2 man/get_transmat.Rd | 2 man/icm.Rd | 6 +- man/merge.icm.Rd | 2 man/merge.netsim.Rd | 9 +-- man/modules.icm.Rd | 6 +- man/modules.net.Rd | 8 +- man/mutate_epi.Rd |only man/netdx.Rd | 10 +-- man/netest.Rd | 8 +- man/netsim.Rd | 10 +-- man/param.dcm.Rd | 4 - man/param.icm.Rd | 6 +- man/param.net.Rd | 10 +-- man/plot.dcm.Rd | 10 +-- man/plot.netdx.Rd | 2 man/plot.netsim.Rd | 9 ++- man/plot.transmat.Rd | 8 +- tests/testthat/test-utils.R | 27 +++++++++ 54 files changed, 454 insertions(+), 352 deletions(-)
Title: Fit Continuous-Time Correlated Random Walk Models to Animal
Movement Data
Description: The Correlated Random Walk Library of
R functions was designed for fitting continuous-time
correlated random walk models with time indexed
covariates. The model is fit using the Kalman-filter on
a state space version of the continuous-time stochastic
movement process.
Author: Devin S. Johnson
Maintainer: Devin S. Johnson <devin.johnson@noaa.gov>
Diff between crawl versions 2.0 dated 2016-02-26 and 2.0.1 dated 2016-07-29
DESCRIPTION | 8 - MD5 | 24 ++--- R/argosDiag2Cov.R | 16 +-- R/crawl-package.R | 4 R/crwN2ll.R | 1 build/vignette.rds |binary demo/northernFurSeal.R | 3 inst/doc/crawl_intro.R | 2 inst/doc/crawl_intro.Rmd | 14 +-- inst/doc/crawl_intro.html | 207 +++++++++++++++++++++++++++++----------------- man/argosDiag2Cov.Rd | 6 - man/crawl-package.Rd | 4 vignettes/crawl_intro.Rmd | 14 +-- 13 files changed, 182 insertions(+), 121 deletions(-)
Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates pre-compiled regression models using the 'rstan' package, which provides
the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the
customary R syntax with a formula and data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut],
Trustees of Columbia University [cph],
R Core Deveopment Team [cph] (R/pp_data.R, R/stan_aov.R),
Douglas Bates [cph] (R/pp_data.R),
Martin Maechler [cph] (R/pp_data.R),
Ben Bolker [cph] (R/pp_data.R),
Steve Walker [cph] (R/pp_data.R),
Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R),
William Venables [cph] (R/stan_polr.R),
Ben Goodrich [cre, aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstanarm versions 2.10.1 dated 2016-06-25 and 2.11.1 dated 2016-07-29
DESCRIPTION | 14 - MD5 | 176 +++++++++-------- NAMESPACE | 3 R/as.matrix.stanreg.R | 110 +++++++---- R/data_block.R |only R/example_model.R | 19 + R/loo.R | 39 ++- R/misc.R | 10 - R/plots.R | 13 + R/posterior_linpred.R | 6 R/posterior_predict.R | 21 +- R/pp_check.R | 2 R/pp_data.R | 83 ++++++-- R/pp_validate.R | 2 R/priors.R | 28 +- R/rstanarm-package.R | 2 R/shinystan.R | 12 - R/stan_aov.R | 12 - R/stan_biglm.R |only R/stan_biglm.fit.R |only R/stan_glm.R | 2 R/stan_glm.fit.R | 143 ++++---------- R/stan_lm.R | 6 R/stan_lm.fit.R | 88 -------- R/stanreg-methods.R | 8 exec/bernoulli.stan | 2 exec/binomial.stan | 2 exec/continuous.stan | 3 exec/count.stan | 2 exec/lm.stan | 36 +-- exec/polr.stan | 10 - inst/NEWS | 7 inst/doc/aov.R | 5 inst/doc/aov.Rmd | 2 inst/doc/aov.html | 22 +- inst/doc/binomial.R | 5 inst/doc/binomial.Rmd | 10 - inst/doc/binomial.html | 32 +-- inst/doc/children/SETTINGS-knitr.txt | 2 inst/doc/continuous.R | 6 inst/doc/continuous.Rmd | 10 - inst/doc/continuous.html | 58 +++-- inst/doc/count.R | 5 inst/doc/count.Rmd | 2 inst/doc/count.html | 12 - inst/doc/glmer.R | 5 inst/doc/glmer.Rmd | 2 inst/doc/glmer.html | 4 inst/doc/lm.R | 5 inst/doc/lm.Rmd | 21 ++ inst/doc/lm.html | 53 ++--- inst/doc/polr.R | 5 inst/doc/polr.Rmd | 7 inst/doc/polr.html | 34 +-- inst/doc/pooling.R | 3 inst/doc/pooling.Rmd | 56 +---- inst/doc/pooling.html | 218 ++++++++++----------- inst/doc/rstanarm.R | 5 inst/doc/rstanarm.Rmd | 4 inst/doc/rstanarm.html | 50 ++--- man/as.matrix.stanreg.Rd | 35 ++- man/example_model.Rd | 17 - man/loo.stanreg.Rd | 12 - man/posterior_linpred.Rd | 4 man/posterior_predict.Rd | 14 - man/pp_check.Rd | 2 man/pp_validate.Rd | 2 man/priors.Rd | 28 +- man/rstanarm-package.Rd | 2 man/shinystan.Rd | 12 - man/stan_biglm.Rd |only man/stan_glm.Rd | 2 man/stan_lm.Rd | 6 man/stanreg-methods.Rd | 6 src/include/models.hpp | 320 +++++++++++++++++++------------- tests/testthat/test_loo.R | 9 tests/testthat/test_methods.R | 112 +++++++---- tests/testthat/test_misc.R | 15 + tests/testthat/test_plots.R | 2 tests/testthat/test_posterior_predict.R | 33 ++- tests/testthat/test_predict.R | 10 - vignettes/aov.Rmd | 2 vignettes/binomial.Rmd | 10 - vignettes/children/SETTINGS-knitr.txt | 2 vignettes/continuous.Rmd | 10 - vignettes/count.Rmd | 2 vignettes/glmer.Rmd | 2 vignettes/lm.Rmd | 21 ++ vignettes/polr.Rmd | 7 vignettes/pooling.Rmd | 56 +---- vignettes/rstanarm.Rmd | 4 91 files changed, 1237 insertions(+), 1026 deletions(-)
Title: Interface for PreSens Fiber Optic Data
Description: Makes output files from select PreSens Fiber Optic Oxygen
Transmitters easier to work with in R. See <http://www.presens.de> for more
information about PreSens (Precision Sensing GmbH). Note: this package is
neither created nor maintained by PreSens.
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Diff between presens versions 2.0.0 dated 2016-03-14 and 2.1.0 dated 2016-07-29
DESCRIPTION | 17 +++++++++-------- MD5 | 18 ++++++++++-------- NAMESPACE | 4 +++- NEWS | 4 ++++ R/import_o2.R | 3 +-- R/last_o2.R |only R/o2_unit_conv.R | 30 +++++++++++++++--------------- R/presens.R | 4 ++-- man/import_o2.Rd | 3 +++ man/last_o2.Rd |only man/presens.Rd | 4 ++-- 11 files changed, 49 insertions(+), 38 deletions(-)
Title: One-Way Independent Groups Design
Description: Two or more samples in one-way independent groups design are compared via different tests.
Author: Osman Dag, Anil Dolgun, N. Meric Konar
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between onewaytests versions 1.1 dated 2015-12-03 and 1.2 dated 2016-07-29
onewaytests-1.1/onewaytests/R/mood.test.R |only onewaytests-1.1/onewaytests/man/mood.test.Rd |only onewaytests-1.2/onewaytests/DESCRIPTION | 10 ++++----- onewaytests-1.2/onewaytests/MD5 | 26 +++++++++++-------------- onewaytests-1.2/onewaytests/NAMESPACE | 2 - onewaytests-1.2/onewaytests/R/bf.test.R | 2 - onewaytests-1.2/onewaytests/R/james.test.R | 2 - onewaytests-1.2/onewaytests/R/kw.test.R | 2 - onewaytests-1.2/onewaytests/R/welch.test.R | 2 - onewaytests-1.2/onewaytests/man/ag.test.Rd | 2 - onewaytests-1.2/onewaytests/man/aov.test.Rd | 2 - onewaytests-1.2/onewaytests/man/james.test.Rd | 8 +++---- onewaytests-1.2/onewaytests/man/kw.test.Rd | 6 ++--- onewaytests-1.2/onewaytests/man/onewaytests.Rd | 4 +-- onewaytests-1.2/onewaytests/man/welch.test.Rd | 6 ++--- 15 files changed, 36 insertions(+), 38 deletions(-)
Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (http://mosaic-web.org) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel T. Kaplan
<kaplan@macalester.edu>, Nicholas J. Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaic versions 0.14 dated 2016-06-16 and 0.14.4 dated 2016-07-29
DESCRIPTION | 17 - MD5 | 65 +++-- NAMESPACE | 11 R/CIsim.R | 75 ++++-- R/Clustering.R | 17 + R/aggregatingAux.R | 23 +- R/ashplot.R | 113 ++++++++++ R/bargraph.R | 86 +++---- R/mPlots.R | 31 +- R/maps2.R | 47 +++- R/mosaic-package.R | 3 R/plotFun.R | 46 ++-- R/tally.R | 133 +++++++----- R/utils.R | 5 R/value.R |only build/vignette.rds |binary inst/doc/GraphicsWithMosaic.html | 6 inst/doc/LessVolume-MoreCreativity.html | 30 +- inst/doc/MinimalR.pdf |binary inst/doc/Resampling.pdf |binary inst/doc/mosaic-resources.html | 4 inst/doc/plotModel-vignette.html | 4 inst/rmarkdown/templates/mosaic-shiny/skeleton/skeleton.Rmd | 2 man/CIsim.Rd | 5 man/bargraph.Rd | 24 +- man/clustering.Rd | 2 man/geom_spline.Rd |only man/mUSMap.Rd | 4 man/mWorldMap.Rd | 3 man/makeMap.Rd | 6 man/mosaicformula.Rd | 8 man/plotFun.Rd | 6 man/tally.Rd | 57 +++-- man/value.Rd |only tests/testthat/test-tabulation.R | 16 + 35 files changed, 557 insertions(+), 292 deletions(-)
Title: EM Algorithms for Estimating Item Response Theory Models
Description: Various Expectation-Maximization (EM) algorithms are implemented for item response theory
(IRT) models. The current implementation includes IRT models for binary and ordinal
responses, along with dynamic and hierarchical IRT models with binary responses. The
latter two models are derived and implemented using variational EM. Subsequent edits
also include variational network and text scaling models.
Author: Kosuke Imai <kimai@princeton.edu>, James Lo <lojames@usc.edu>, Jonathan Olmsted <jpolmsted@gmail.com>
Maintainer: James Lo <lojames@usc.edu>
Diff between emIRT versions 0.0.6 dated 2016-03-22 and 0.0.7 dated 2016-07-29
ChangeLog | 4 ++++ DESCRIPTION | 12 ++++++------ MD5 | 36 ++++++++++++++++++------------------ R/poisIRT.R | 4 ++-- man/binIRT.Rd | 2 +- man/boot_emIRT.Rd | 2 +- man/convertRC.Rd | 2 +- man/dynIRT.Rd | 2 +- man/getStarts.Rd | 2 +- man/hierIRT.Rd | 2 +- man/makePriors.Rd | 2 +- man/networkIRT.Rd | 2 +- man/ordIRT.Rd | 2 +- man/poisIRT.Rd | 2 +- src/Makevars.win | 3 ++- src/calcLB.cpp | 2 +- src/checkInputs.cpp | 6 +++--- src/enttn1.cpp | 5 ++++- src/estimate_poisIRT.cpp | 10 ++++++++-- 19 files changed, 58 insertions(+), 44 deletions(-)
Title: Analyze Dose-Volume Histograms and Check Constraints
Description: Functionality for analyzing dose-volume histograms (DVH)
in radiation oncology: Read DVH text files, calculate DVH
metrics as well as generalized equivalent uniform dose (gEUD),
biologically effective dose (BED), equivalent dose in 2 Gy
fractions (EQD2), normal tissue complication probability
(NTCP), and tumor control probability (TCP). Show DVH
diagrams, check and visualize quality assurance constraints
for the DVH. Includes web-based graphical user interface.
Author: Daniel Wollschlaeger [aut, cre],
Heiko Karle [aut],
Heinz Schmidberger [ctb]
Maintainer: Daniel Wollschlaeger <wollschlaeger@uni-mainz.de>
Diff between DVHmetrics versions 0.3.5 dated 2016-03-09 and 0.3.6 dated 2016-07-29
DESCRIPTION | 8 +++---- MD5 | 38 ++++++++++++++++++---------------- NAMESPACE | 6 +++-- R/getEUD.R | 50 +++++++++++++++++++++++----------------------- R/getMeanDVH.R | 12 ++++++++++- R/getNTCP.R | 10 ++++----- R/save.R | 4 +-- R/showDVH.R | 6 ++--- R/showMeanDVH.R |only build/vignette.rds |binary data/dataConstr.rda |binary data/dataMZ.rda |binary inst/ChangeLog | 13 ++++++++++- inst/DVHshiny/server.R | 1 inst/doc/DVHmetrics.Rnw | 3 +- inst/doc/DVHmetrics.pdf |binary inst/doc/DVHshiny.pdf |binary man/DVHmetrics-package.Rd | 4 +-- man/getNTCP.Rd | 6 ++--- man/showMeanDVH.Rd |only vignettes/DVHmetrics.Rnw | 3 +- 21 files changed, 95 insertions(+), 69 deletions(-)
Title: Identifies Signatures Present in a Tumor Sample
Description: Takes sample information in the form of the fraction of mutations
in each of 96 trinucleotide contexts and identifies the weighted combination
of published signatures that, when summed, most closely reconstructs the
mutational profile.
Author: Rachel Rosenthal
Maintainer: Rachel Rosenthal <rachel.rosenthal.14@ucl.ac.uk>
Diff between deconstructSigs versions 1.6.0 dated 2016-01-29 and 1.8.0 dated 2016-07-29
deconstructSigs-1.6.0/deconstructSigs/man/findComp.Rd |only deconstructSigs-1.8.0/deconstructSigs/DESCRIPTION | 13 deconstructSigs-1.8.0/deconstructSigs/MD5 | 18 - deconstructSigs-1.8.0/deconstructSigs/NAMESPACE | 2 deconstructSigs-1.8.0/deconstructSigs/NEWS |only deconstructSigs-1.8.0/deconstructSigs/R/mut.to.sigs.input.R | 147 +++++----- deconstructSigs-1.8.0/deconstructSigs/R/normalize.data.R | 22 + deconstructSigs-1.8.0/deconstructSigs/R/vcf.to.sigs.input.R |only deconstructSigs-1.8.0/deconstructSigs/R/whichSignatures.R | 15 - deconstructSigs-1.8.0/deconstructSigs/man/mut.to.sigs.input.Rd | 40 +- deconstructSigs-1.8.0/deconstructSigs/man/vcf.to.sigs.input.Rd |only deconstructSigs-1.8.0/deconstructSigs/man/whichSignatures.Rd | 12 12 files changed, 155 insertions(+), 114 deletions(-)
More information about deconstructSigs at CRAN
Permanent link
Title: An API Wrapper for the Bureau of Labor Statistics (BLS)
Description: Scrapes various data from the Bureau of Labor Statistics, which is the statistical branch of the United States Department of Labor. The package has additional functions to help parse, analyze and visualize the data.
Author: Kris Eberwein [aut, cre]
Maintainer: Kris Eberwein <eberwein@knights.ucf.edu>
Diff between blscrapeR versions 0.4.1 dated 2016-07-24 and 0.4.2 dated 2016-07-29
DESCRIPTION | 6 +- MD5 | 49 ++++++++++--------- NAMESPACE | 1 NEWS.md | 25 +++++++++- R/bls_api.R | 8 ++- R/county_map.R | 10 ++-- R/get_bls_county.R | 61 +++++++++++++++++++----- R/get_bls_state.R | 36 ++++++++++---- R/maps.R | 75 ++++++++++++++++++++++-------- R/state_map.R | 10 ++-- README.md | 14 ++++- build/vignette.rds |binary inst/doc/Employment_and_Unemployment.html | 4 - inst/doc/Inflation_and_Prices.html | 4 - inst/doc/Mapping_BLS_Data.R |only inst/doc/Mapping_BLS_Data.Rmd |only inst/doc/Mapping_BLS_Data.html |only inst/doc/Pay_and_Benefits.html | 4 - man/bls_api.Rd | 10 +++- man/bls_map_county.Rd | 34 ++++++++++--- man/bls_map_state.Rd | 18 ++++--- man/county_map_data.Rd | 17 ++++-- man/get_bls_county.Rd | 23 +++++++-- man/get_bls_state.Rd | 9 ++- man/state_map_data.Rd | 17 ++++-- tests/testthat/test_bls_api.R | 6 +- tests/testthat/test_bls_csv.R |only vignettes/Mapping_BLS_Data.Rmd |only 28 files changed, 315 insertions(+), 126 deletions(-)
Title: Hierarchical Bayesian Model for a Hazard Function
Description: Fits a piecewise exponential hazard to survival data using a
Hierarchical Bayesian model with an Intrinsic Conditional Autoregressive
formulation for the spatial dependency in the hazard rates for each piece.
This function uses Metropolis- Hastings-Green MCMC to allow the number of split
points to vary. This function outputs graphics that display the histogram of
the number of split points and the trace plots of the hierarchical parameters.
The function outputs a list that contains the posterior samples for the number
of split points, the location of the split points, and the log hazard rates
corresponding to these splits. Additionally, this outputs the posterior samples
of the two hierarchical parameters, Mu and Sigma^2.
Author: person("Andrew", "Chapple", email = "Andrew.G.Chapple@rice.edu", role = c("aut", "cre"))
Maintainer: Andrew Chapple <Andrew.G.Chapple@rice.edu>
Diff between BayesPiecewiseICAR versions 0.1.0 dated 2016-07-27 and 0.1.1 dated 2016-07-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/ICARBHSampler.R | 11 ++++++----- man/ICARBHSampler.Rd | 16 ++++++++-------- 4 files changed, 20 insertions(+), 19 deletions(-)
More information about BayesPiecewiseICAR at CRAN
Permanent link
Title: OC Roll Call Analysis Software
Description: Estimates Optimal Classification scores from roll call
votes supplied though a 'rollcall' object from package 'pscl'.
Author: Keith Poole <ktpoole@uga.edu>, Jeffrey Lewis
<jblewis@ucla.edu>, James Lo <lojames@usc.edu> and Royce
Carroll <rcarroll@rice.edu>
Maintainer: James Lo <lojames@usc.edu>
Diff between oc versions 0.95 dated 2014-09-26 and 0.96 dated 2016-07-29
ChangeLog | 7 +++++++ DESCRIPTION | 14 +++++++------- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 11 +++++++++++ build |only man/UN.Rd | 2 +- man/oc.Rd | 4 ++-- man/plot.OCangles.Rd | 2 +- man/plot.OCcoords.Rd | 2 +- man/plot.OCcutlines.Rd | 2 +- man/plot.OCobject.Rd | 2 +- man/plot.OCskree.Rd | 2 +- man/sen90.Rd | 2 +- man/sen90oc.Rd | 2 +- man/summary.OCobject.Rd | 2 +- src/oc.f90 | 1 + 16 files changed, 52 insertions(+), 32 deletions(-)
Title: Multiplicative Competitive Interaction (MCI) Model
Description: The Multiplicative Competitive Interaction (MCI) Model by Nakanishi & Cooper (1974) <DOI:10.2307/3151146> is an econometric model for analyzing market shares and/or market areas and is closely related to the Huff model. The functions in this package include fitting the MCI model, MCI shares simulations, the log-centering transformation of MCI datasets, creation of interaction matrices and tools for data preparation. Additionally, the package provides applications for the Huff model, including a non-linear fitting algorithm.
Author: Thomas Wieland
Maintainer: Thomas Wieland <thomas.wieland.geo@googlemail.com>
Diff between MCI versions 1.1.1 dated 2016-06-29 and 1.2.0 dated 2016-07-29
DESCRIPTION | 10 +++---- MD5 | 64 ++++++++++++++++++++++++++++------------------- NAMESPACE | 6 ++-- R/checkvar.R | 30 +++++++++++----------- R/geom.R | 1 R/huff.attrac.R |only R/huff.decay.R |only R/huff.fit.R |only R/huff.shares.R |only R/ijmatrix.create.R | 32 +++++++++++++++++++---- R/ijmatrix.crosstab.R |only R/ijmatrix.shares.R | 11 +++----- R/mci.fit.R | 6 +--- R/mci.shares.R | 9 ++---- R/mci.transmat.R | 9 ++++-- R/mci.transvar.R | 21 ++++++++++----- R/model.fit.R |only R/shares.total.R | 26 +++++++++++++------ R/var.correct.R | 2 - data/Freiburg1.rda |binary data/Freiburg2.rda |binary data/Freiburg3.rda |only data/ce.rda |binary data/grocery1.rda |binary data/grocery2.rda |binary man/Freiburg3.Rd |only man/MCI-package.Rd | 11 ++++---- man/huff.attrac.Rd |only man/huff.decay.Rd |only man/huff.fit.Rd |only man/huff.shares.Rd |only man/ijmatrix.create.Rd | 32 +++++++++++++---------- man/ijmatrix.crosstab.Rd |only man/ijmatrix.shares.Rd | 2 - man/mci.fit.Rd | 16 ++++++++--- man/mci.shares.Rd | 4 +- man/mci.transmat.Rd | 17 +++++++++--- man/mci.transvar.Rd | 17 +++++++++--- man/model.fit.Rd |only man/shares.total.Rd | 29 +++++++++++++++++---- 40 files changed, 228 insertions(+), 127 deletions(-)
Title: Hierarchical Modelling of Faecal Egg Counts
Description: An implementation of hierarchical models
for faecal egg count data to assess anthelmintic
efficacy. Bayesian inference is done via MCMC sampling using Stan.
Author: Craig Wang [cre, aut],
Michaela Paul [aut],
Reinhard Furrer [ctb],
Trustees of Columbia University [cph] (rstanarm)
Maintainer: Craig Wang <craig.wang@uzh.ch>
Diff between eggCounts versions 1.1 dated 2016-07-06 and 1.1-1 dated 2016-07-29
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- inst/NEWS | 6 ++++++ man/eggCounts-package.Rd | 4 ++-- 4 files changed, 18 insertions(+), 12 deletions(-)
Title: Recovering a Basic Space from Issue Scales
Description: Conducts Aldrich-McKelvey and Blackbox Scaling to Recover
Latent Dimensions of Judgment.
Author: Keith Poole <ktpoole@uga.edu>, Howard Rosenthal
<hr31@nyu.edu>, Jeffrey Lewis <jblewis@ucla.edu>,
James Lo <lojames@usc.edu> and Royce Carroll
<rcarroll@rice.edu>
Maintainer: James Lo <lojames@usc.edu>
Diff between basicspace versions 0.17 dated 2016-03-09 and 0.18 dated 2016-07-29
ChangeLog | 2 + DESCRIPTION | 12 ++++---- MD5 | 66 ++++++++++++++++++++++---------------------- build/vignette.rds |binary man/Issues1980.Rd | 2 - man/Issues1980_bb.Rd | 2 - man/LC1980.Rd | 2 - man/LC1980_bbt.Rd | 2 - man/aldmck.Rd | 2 - man/blackbox.Rd | 2 - man/blackbox_transpose.Rd | 2 - man/boot_aldmck.Rd | 2 - man/boot_blackbt.Rd | 2 - man/bootbbt.Rd | 2 - man/colombia.Rd | 2 - man/fit.Rd | 2 - man/individuals.Rd | 2 - man/plot.AM.Rd | 2 - man/plot.aldmck.Rd | 2 - man/plot.aldmck_negative.Rd | 2 - man/plot.aldmck_positive.Rd | 2 - man/plot.blackbox.Rd | 2 - man/plot.blackbt.Rd | 2 - man/plot.boot_aldmck.Rd | 2 - man/plot.boot_blackbt.Rd | 2 - man/plot.cdf.Rd | 2 - man/plotcdf.blackbt.Rd | 2 - man/predict.aldmck.Rd | 2 - man/predict.blackbox.Rd | 2 - man/predict.blackbt.Rd | 2 - man/stimuli.Rd | 2 - man/summary.aldmck.Rd | 2 - man/summary.blackbox.Rd | 2 - man/summary.blackbt.Rd | 2 - 34 files changed, 71 insertions(+), 69 deletions(-)
Title: Regions of Common Profiles Modelling with Mixtures-of-Experts
Description: Identifies regions of common (species) profiles (RCPs), possibly when sampling artefacts are present. Within a region the probability of sampling all species remains approximately constant. This is performed using mixtures-of-experts models. The package also contains associated methods, such as diagnostics.
Author: Scott D. Foster
Maintainer: Scott Foster <scott.foster@csiro.au>
Diff between RCPmod versions 2.141 dated 2016-07-29 and 2.142 dated 2016-07-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/RCPmod.R | 1 + R/sysdata.rda |binary 4 files changed, 7 insertions(+), 6 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: Functions for Kalman filtering, smoothing,
forecasting and simulation of multivariate exponential family state space
models with exact diffuse initialization and sequential processing.
Author: Jouni Helske <jouni.helske@jyu.fi>
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between KFAS versions 1.2.3 dated 2016-06-22 and 1.2.4 dated 2016-07-29
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++------------ R/logLik.SSModel.R | 19 ++++++++++++++----- build/vignette.rds |binary data/GlobalTemp.rda |binary data/alcohol.rda |binary data/boat.rda |binary data/sexratio.rda |binary inst/doc/KFAS.pdf |binary src/declarations.h | 2 ++ src/gloglik.f95 | 12 ++---------- src/init.c | 3 ++- tests/testthat/testLMM.R |only 14 files changed, 41 insertions(+), 32 deletions(-)
Title: Scalable Bayesian Rule Lists Model
Description: An implementation of Scalable Bayesian Rule Lists Algorithm.
Author: Hongyu Yang [aut, cre],
Morris Chen [ctb],
Cynthia Rudin [aut, ctb],
Margo Seltzer [aut, ctb]
Maintainer: Hongyu Yang <hongyuy@mit.edu>
Diff between sbrl versions 1.1 dated 2016-07-24 and 1.2 dated 2016-07-29
DESCRIPTION | 8 - MD5 | 12 +- configure | 307 +++----------------------------------------------------- configure.ac | 200 ++---------------------------------- src/Makevars.in | 2 src/rule.h | 2 src/rulelib.c | 24 ++-- 7 files changed, 58 insertions(+), 497 deletions(-)
Title: Randomized Singular Value Decomposition
Description: Randomized singular value decomposition (rsvd) is a very fast probabilistic algorithm that can be used to compute the near optimal low-rank singular value decomposition of massive data sets with high accuracy. SVD plays a central role in data analysis and scientific computing. SVD is also widely used for computing (randomized) principal component analysis (PCA), a linear dimensionality reduction technique. Randomized PCA (rpca) uses the approximated singular value decomposition to compute the most significant principal components. This package also includes a function to compute (randomized) robust principal component analysis (RPCA). In addition several plot functions are provided.
Author: N. Benjamin Erichson [aut, cre]
Maintainer: N. Benjamin Erichson <nbe@st-andrews.ac.uk>
Diff between rsvd versions 0.3 dated 2015-11-13 and 0.6 dated 2016-07-29
rsvd-0.3/rsvd/R/rPCA.R |only rsvd-0.3/rsvd/R/rSVD.R |only rsvd-0.3/rsvd/tests/testthat/testthat.R |only rsvd-0.6/rsvd/DESCRIPTION | 22 - rsvd-0.6/rsvd/MD5 | 32 +- rsvd-0.6/rsvd/NAMESPACE | 4 rsvd-0.6/rsvd/R/ggbiplot.R | 310 +++++++++---------------- rsvd-0.6/rsvd/R/plots.R | 19 - rsvd-0.6/rsvd/R/reigen.R |only rsvd-0.6/rsvd/R/rpca.R |only rsvd-0.6/rsvd/R/rrpca.R |only rsvd-0.6/rsvd/R/rsvd.R |only rsvd-0.6/rsvd/R/tiger.R |only rsvd-0.6/rsvd/data |only rsvd-0.6/rsvd/man/ggbiplot.Rd | 52 +--- rsvd-0.6/rsvd/man/reigen.Rd |only rsvd-0.6/rsvd/man/rpca.Rd | 51 ++-- rsvd-0.6/rsvd/man/rrpca.Rd |only rsvd-0.6/rsvd/man/rsvd.Rd | 80 ++---- rsvd-0.6/rsvd/man/tiger.Rd |only rsvd-0.6/rsvd/tests/testthat/test_dependency.R |only rsvd-0.6/rsvd/tests/testthat/test_reigen.R |only rsvd-0.6/rsvd/tests/testthat/test_rpca.R |only rsvd-0.6/rsvd/tests/testthat/test_rrpca.R |only rsvd-0.6/rsvd/tests/testthat/test_rsvd.R |only 25 files changed, 236 insertions(+), 334 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a
probabilistic programming language that implements full Bayesian statistical
inference via Markov Chain Monte Carlo, rough Bayesian inference via variational
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need
to derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] (R/cxxfunplus.R),
The R Core Team [cph] (R/pairs.R),
Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R),
Hadley Wickham [cph] (R/rtools.R),
Joel de Guzman [cph] (Boost),
John Fletcher [cph] (Boost),
Thomas Heller [cph] (Boost),
Eric Niebler [cph] (Boost)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.10.1 dated 2016-06-24 and 2.11.1 dated 2016-07-29
DESCRIPTION | 16 ++-- MD5 | 28 +++---- R/cxxfunplus.R | 4 - R/misc.R | 18 +++- R/plugin.R | 5 - R/rstan.R | 14 ++- R/stan_plot.R | 2 R/stanfit-class.R | 10 -- R/stanmodel-class.R | 15 +-- inst/NEWS | 15 +++ inst/doc/rstan.html | 160 +++++++++++++++++++--------------------- inst/doc/stanfit-objects.html | 164 +++++++++++++++++++++--------------------- man/sflist2stanfit.Rd | 2 man/stan.Rd | 6 + man/stan_model.Rd | 5 + 15 files changed, 243 insertions(+), 221 deletions(-)
Title: Regions of Common Profiles Modelling with Mixtures-of-Experts
Description: Identifies regions of common (species) profiles (RCPs), possibly when sampling artefacts are present. Within a region the probability of sampling all species remains approximately constant. This is performed using mixtures-of-experts models. The package also contains associated methods, such as diagnostics.
Author: Scott D. Foster
Maintainer: Scott Foster <scott.foster@csiro.au>
Diff between RCPmod versions 1.4 dated 2013-11-02 and 2.141 dated 2016-07-29
RCPmod-1.4/RCPmod/man/BIC.regimix.Rd |only RCPmod-1.4/RCPmod/src/allClasses.cc |only RCPmod-1.4/RCPmod/src/habiPred1.cc |only RCPmod-1.4/RCPmod/src/habiPred1.h |only RCPmod-1.4/RCPmod/src/habitat4.cc |only RCPmod-1.4/RCPmod/src/habitat4.h |only RCPmod-1.4/RCPmod/src/myData1.cc |only RCPmod-1.4/RCPmod/src/myDerivs1.cc |only RCPmod-1.4/RCPmod/src/myOptCont1.cc |only RCPmod-1.4/RCPmod/src/myParms1.cc |only RCPmod-2.141/RCPmod/DESCRIPTION | 15 RCPmod-2.141/RCPmod/INDEX | 32 RCPmod-2.141/RCPmod/MD5 | 59 RCPmod-2.141/RCPmod/NAMESPACE | 27 RCPmod-2.141/RCPmod/NEWS |only RCPmod-2.141/RCPmod/R/RCPmod.R | 2556 ++++++++++++++++++---- RCPmod-2.141/RCPmod/R/sysdata.rda |only RCPmod-2.141/RCPmod/inst |only RCPmod-2.141/RCPmod/man/AIC.regimix.Rd | 10 RCPmod-2.141/RCPmod/man/coef.regimix.Rd | 4 RCPmod-2.141/RCPmod/man/cooks.distance.regimix.Rd |only RCPmod-2.141/RCPmod/man/extractAIC.regimix.Rd | 8 RCPmod-2.141/RCPmod/man/orderFitted.Rd | 5 RCPmod-2.141/RCPmod/man/plot.regimix.Rd | 28 RCPmod-2.141/RCPmod/man/plot.registab.Rd |only RCPmod-2.141/RCPmod/man/predict.regimix.Rd | 13 RCPmod-2.141/RCPmod/man/print.regimix.Rd | 4 RCPmod-2.141/RCPmod/man/regiboot.Rd |only RCPmod-2.141/RCPmod/man/regimix.Rd | 114 RCPmod-2.141/RCPmod/man/residuals.regimix.Rd |only RCPmod-2.141/RCPmod/man/simRCPdata.Rd | 54 RCPmod-2.141/RCPmod/man/stability.regimix.Rd |only RCPmod-2.141/RCPmod/man/vcov.regimix.Rd | 22 RCPmod-2.141/RCPmod/src/Tweedie.cc |only RCPmod-2.141/RCPmod/src/Tweedie.h |only RCPmod-2.141/RCPmod/src/TweedieDeriv.cc |only RCPmod-2.141/RCPmod/src/allClasses4.cc |only RCPmod-2.141/RCPmod/src/myData4.cc |only RCPmod-2.141/RCPmod/src/myDerivs4.cc |only RCPmod-2.141/RCPmod/src/myFits4.cc |only RCPmod-2.141/RCPmod/src/myOptCont4.cc |only RCPmod-2.141/RCPmod/src/myParms4.cc |only RCPmod-2.141/RCPmod/src/rcp4.cc |only RCPmod-2.141/RCPmod/src/rcp4.h |only RCPmod-2.141/RCPmod/src/rcpPred4.cc |only RCPmod-2.141/RCPmod/src/rcpPred4.h |only 46 files changed, 2419 insertions(+), 532 deletions(-)
Title: Research Project Directory Generator
Description: Create a project directory structure, along with typical files
for that project. This allows projects to be quickly and easily created,
as well as for them to be standardized. Designed specifically with scientists
in mind (mainly bio-medical researchers, but likely applies to other fields).
Author: Luke Johnston [aut, cre]
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Diff between prodigenr versions 0.2.7 dated 2016-05-14 and 0.3.0 dated 2016-07-29
prodigenr-0.2.7/prodigenr/R/list_templates.R |only prodigenr-0.2.7/prodigenr/inst/templates/files |only prodigenr-0.2.7/prodigenr/inst/templates/projects |only prodigenr-0.2.7/prodigenr/man/list_templates.Rd |only prodigenr-0.3.0/prodigenr/DESCRIPTION | 9 prodigenr-0.3.0/prodigenr/MD5 | 65 ++-- prodigenr-0.3.0/prodigenr/NAMESPACE | 5 prodigenr-0.3.0/prodigenr/NEWS.md | 12 prodigenr-0.3.0/prodigenr/R/includes.R |only prodigenr-0.3.0/prodigenr/R/prodigen.R | 150 +++------ prodigenr-0.3.0/prodigenr/R/template_list.R |only prodigenr-0.3.0/prodigenr/R/utils.R |only prodigenr-0.3.0/prodigenr/README.md | 16 - prodigenr-0.3.0/prodigenr/build/vignette.rds |binary prodigenr-0.3.0/prodigenr/inst/doc/introduction.R | 35 +- prodigenr-0.3.0/prodigenr/inst/doc/introduction.Rmd | 90 ++++- prodigenr-0.3.0/prodigenr/inst/doc/introduction.html | 62 ++- prodigenr-0.3.0/prodigenr/inst/templates/R |only prodigenr-0.3.0/prodigenr/inst/templates/abstract |only prodigenr-0.3.0/prodigenr/inst/templates/manuscript |only prodigenr-0.3.0/prodigenr/inst/templates/poster |only prodigenr-0.3.0/prodigenr/inst/templates/readme |only prodigenr-0.3.0/prodigenr/inst/templates/rfigshare |only prodigenr-0.3.0/prodigenr/inst/templates/slides |only prodigenr-0.3.0/prodigenr/man/include_mit_license.Rd |only prodigenr-0.3.0/prodigenr/man/include_rfigshare_script.Rd |only prodigenr-0.3.0/prodigenr/man/include_strobe.Rd |only prodigenr-0.3.0/prodigenr/man/prodigen.Rd | 42 +- prodigenr-0.3.0/prodigenr/man/template_list.Rd |only prodigenr-0.3.0/prodigenr/tests/testthat/test-projects.R | 219 ++++++++++---- prodigenr-0.3.0/prodigenr/vignettes/file_structure.txt |only prodigenr-0.3.0/prodigenr/vignettes/introduction.Rmd | 90 ++++- 32 files changed, 498 insertions(+), 297 deletions(-)
Title: Client for 'jq', a JSON Processor
Description: Client for 'jq', a JSON processor (<http://stedolan.github.io/jq/>), written
in C. 'jq' allows the following with JSON data: index into, parse, do calculations,
cut up and filter, change key names and values, perform conditionals and comparisons,
and more.
Author: Rich FitzJohn [aut],
Jeroen Ooms [aut],
Scott Chamberlain [aut, cre],
Stefan Milton Bache [aut],
Stephen Dolan [aut, cph] (jq library),
jq contributors [ctb] (jq library; authors listed in inst/AUTHORS.jq),
Free Software Foundation [ctb, cph] (parser code in src/parser.c),
David M Gay [ctb, cph] (code in src/jv_dtoa.c)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between jqr versions 0.2.3 dated 2016-05-10 and 0.2.4 dated 2016-07-29
jqr-0.2.3/jqr/vignettes/jqr_vignette.md |only jqr-0.2.4/jqr/DESCRIPTION | 9 +++++---- jqr-0.2.4/jqr/MD5 | 9 ++++----- jqr-0.2.4/jqr/NEWS.md | 7 +++++++ jqr-0.2.4/jqr/build/vignette.rds |binary jqr-0.2.4/jqr/src/jqr.cpp | 7 ++++--- 6 files changed, 20 insertions(+), 12 deletions(-)
Title: Time Value of Money, Time Series Analysis and Computational
Finance
Description: Package for time value of money calculation, time series analysis and computational finance.
Author: Felix Yanhui Fan <nolanfyh@gmail.com>
Maintainer: Felix Yanhui Fan <nolanfyh@gmail.com>
Diff between FinCal versions 0.6.2 dated 2015-12-30 and 0.6.3 dated 2016-07-29
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NAMESPACE | 1 + NEWS | 5 +++++ R/irr.R | 4 ++-- R/irr2.R |only README.md | 11 ++++++++--- man/irr2.Rd |only 8 files changed, 27 insertions(+), 14 deletions(-)
Title: Bayesian Analysis of Heterogeneous Treatment Effect
Description: It is vital to assess the heterogeneity of treatment effects
(HTE) when making health care decisions for an individual patient or a group
of patients. Nevertheless, it remains challenging to evaluate HTE based
on information collected from clinical studies that are often designed and
conducted to evaluate the efficacy of a treatment for the overall population.
The Bayesian framework offers a principled and flexible approach to estimate
and compare treatment effects across subgroups of patients defined by their
characteristics. This package allows users to explore a wide range of Bayesian
HTE analysis models, and produce posterior inferences about HTE.
Author: Chenguang Wang [aut, cre],
Ravi Varadhan [aut],
Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Maintainer: Chenguang Wang <cwang68@jhmi.edu>
Diff between beanz versions 1.5 dated 2016-07-06 and 1.6 dated 2016-07-29
DESCRIPTION | 10 +- MD5 | 4 - inst/doc/beanz_vignettes.html | 152 +++++++++++++++++++++--------------------- 3 files changed, 83 insertions(+), 83 deletions(-)
More information about AhoCorasickTrie at CRAN
Permanent link