Tue, 09 Aug 2016

New package ScottKnottESD with initial version 1.1
Package: ScottKnottESD
Type: Package
Title: The Scott-Knott Effect Size Difference (ESD) Test
Version: 1.1
Date: 2016-08-08
Author: Chakkrit Tantithamthavorn
Maintainer: Chakkrit Tantithamthavorn <kla@chakkrit.com>
Description: An enhancement of the Scott-Knott test (which cluster distributions into statistically distinct ranks) that takes effect size into consideration.
License: GPL (>= 2)
Depends: ScottKnott, reshape2, effsize, stats
LazyData: true
URL: https://github.com/klainfo/ScottKnottESD
BugReports: https://github.com/klainfo/ScottKnottESD/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-09 14:33:46 UTC; klainfo
Repository: CRAN
Date/Publication: 2016-08-10 02:31:30

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Package PST updated to version 0.90 with previous version 0.88 dated 2016-05-26

Title: Probabilistic Suffix Trees and Variable Length Markov Chains
Description: Provides a framework for analysing state sequences with probabilistic suffix trees (PST), the construction that stores variable length Markov chains (VLMC). Besides functions for learning and optimizing VLMC models, the PST library includes many additional tools to analyse sequence data with these models: visualization tools, functions for sequence prediction and artificial sequences generation, as well as for context and pattern mining. The package is specifically adapted to the field of social sciences by allowing to learn VLMC models from sets of individual sequences possibly containing missing values, and by accounting for case weights. The library also allows to compute probabilistic divergence between two models, and to fit segmented VLMC, where sub-models fitted to distinct strata of the learning sample are stored in a single PST. This software results from research work executed within the framework of the Swiss National Centre of Competence in Research LIVES, which is financed by the Swiss National Science Foundation. The authors are grateful to the Swiss National Science Foundation for its financial support.
Author: Alexis Gabadinho [aut, cre, cph]
Maintainer: Alexis Gabadinho <alexis.gabadinho@unige.ch>

Diff between PST versions 0.88 dated 2016-05-26 and 0.90 dated 2016-08-09

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Package Rfast updated to version 1.3 with previous version 1.2 dated 2016-08-03

Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Fast covariance matrix calculation, Mahalanobis distance and column-wise variances are some of the functions.
Author: Manos Papadakis, Michail Tsagris, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis and John Burkardt
Maintainer: Manos Papadakis <papadakm95@gmail.com>

Diff between Rfast versions 1.2 dated 2016-08-03 and 1.3 dated 2016-08-09

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Package ph2bye updated to version 0.1.3 with previous version 0.1.2 dated 2016-07-27

Title: Phase II Clinical Trial Design Using Bayesian Methods
Description: Calculate the Bayesian posterior/predictive probability and determine the sample size and stopping boundaries for single-arm Phase II design.
Author: Yalin Zhu, Rui Qin
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>

Diff between ph2bye versions 0.1.2 dated 2016-07-27 and 0.1.3 dated 2016-08-09

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Package MANOVA.RM updated to version 0.0.4 with previous version 0.0.3 dated 2016-07-06

Title: Analysis of Multivariate Data and Repeated Measures Designs
Description: Implemented are various tests for semi-parametric repeated measures and general MANOVA designs that do neither assume multivariate normality nor covariance homogeneity, i.e., the procedures are applicable for a wide range of general multivariate factorial designs.
Author: Sarah Friedrich, Frank Konietschke, Markus Pauly
Maintainer: Sarah Friedrich <sarah.friedrich@uni-ulm.de>

Diff between MANOVA.RM versions 0.0.3 dated 2016-07-06 and 0.0.4 dated 2016-08-09

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New package ICAOD with initial version 0.9.1
Package: ICAOD
Title: Imperialist Competitive Algorithm for Optimal Designs
Version: 0.9.1
Authors@R: c(person("Ehsan", "Masoudi", role = c("aut", "cre"), email = "ehsan.masoudi@wwu.de"), person("Heinz", "Holling", role = "aut"), person("Weng Kee", "Wong", role = "aut"))
Description: Finding locally D-optimal, minimax D-optimal, standardized maximin D-optimal, optim-on-the-average and multiple objective optimal designs for nonlinear models. Different Fisher information matrices can also be set by user. There are also useful functions for verifying the optimality of the designs with respect to different criteria by equivalence theorem. ICA is a meta-heuristic evolutionary algorithm inspired from the socio-political process of humans. See Masoudi et al. (2016) <doi:10.1016/j.csda.2016.06.014>.
Depends: R (>= 3.1.3)
License: GPL (>= 2)
LazyData: true
LinkingTo: Rcpp, RcppEigen
Imports: Rcpp, Rsolnp, nloptr, stats, graphics, grDevices
Suggests: rgl, lattice
RoxygenNote: 5.0.1
BugReports: https://github.com/ehsan66/ICAOD/issues
URL: https://github.com/ehsan66/ICAOD
NeedsCompilation: yes
Packaged: 2016-08-07 18:54:58 UTC; ehsan
Author: Ehsan Masoudi [aut, cre], Heinz Holling [aut], Weng Kee Wong [aut]
Maintainer: Ehsan Masoudi <ehsan.masoudi@wwu.de>
Repository: CRAN
Date/Publication: 2016-08-10 02:48:33

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Package gmapsdistance updated to version 3.0 with previous version 2.0 dated 2016-08-01

Title: Distance and Travel Time Between Two Points from Google Maps
Description: Get distance and travel time between two points from Google Maps. Four possible modes of transportation (bicycling, walking, driving and public transportation).
Author: Rodrigo Azuero Melo & David Zarruk
Maintainer: Rodrigo Azuero Melo <rodazuero@gmail.com>

Diff between gmapsdistance versions 2.0 dated 2016-08-01 and 3.0 dated 2016-08-09

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New package ggpolypath with initial version 0.1.0
Package: ggpolypath
Type: Package
Title: Polygons with Holes for the Grammar of Graphics
Version: 0.1.0
Description: Tools for working with polygons with holes in 'ggplot2', with a new 'geom' for drawing a 'polypath' applying the 'evenodd' or 'winding' rules.
Authors@R: c(person("Michael D.","Sumner", role = c("aut", "cre"), email = "mdsumner@gmail.com"), person(given = "Kohske", family = "Takahashi", email = "takahashi.kohske@gmail.com", role = "ctb", comment = "original author of 'geom_holygon'"))
URL: https://github.com/mdsumner/ggpolypath, http://rpubs.com/kohske/3522
BugReports: https://github.com/mdsumner/ggpolypath/issues
Depends: R (>= 3.1), ggplot2 (>= 2.1.0)
Suggests: rmarkdown, knitr
LazyData: yes
License: GPL-3
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-09 16:51:58 UTC; michae_sum
Author: Michael D. Sumner [aut, cre], Kohske Takahashi [ctb] (original author of 'geom_holygon')
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-10 02:53:58

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Package TMB updated to version 1.7.2 with previous version 1.7.0 dated 2016-03-25

Title: Template Model Builder: A General Random Effect Tool Inspired by ADMB
Description: With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines CppAD (C++ automatic differentiation), Eigen (templated matrix-vector library) and CHOLMOD (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through BLAS and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>

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Package pnf (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-06-19 0.1.1

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Package STPGA updated to version 3.0 with previous version 2.0 dated 2016-05-05

Title: Selection of Training Populations by Genetic Algorithm
Description: Can be utilized to select a (test data) calibrated training population in high dimensional prediction problems.
Author: Deniz Akdemir
Maintainer: Deniz Akdemir <deniz.akdemir.work@gmail.com>

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Package rio updated to version 0.4.11 with previous version 0.4.8 dated 2016-06-14

Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that the user is probably willing to make: 'import()' and 'export()' determine the data structure from the file extension, reasonable defaults are used for data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is natively supported (including from SSL/HTTPS), compressed files can be read directly without explicit decompression, and fast import packages are used where appropriate.
Author: Jason Becker [ctb], Chung-hong Chan [aut], Geoffrey CH Chan [ctb], Thomas J. Leeper [aut, cre], Christopher Gandrud [ctb], Andrew MacDonald [ctb], Ista Zahn [ctb], Stanislaus Stadlmann [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

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Package rdrobust updated to version 0.92 with previous version 0.91 dated 2016-05-28

Title: Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <scalonico@bus.miami.edu>, Matias D. Cattaneo <cattaneo@umich.edu>, Max H. Farrell, <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@umich.edu>
Maintainer: Sebastian Calonico <scalonico@bus.miami.edu>

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Package randomLCA updated to version 1.0-10 with previous version 1.0-9 dated 2016-06-24

Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken.beath@mq.edu.au>

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Package OrthoPanels updated to version 1.0-0 with previous version 0.9-1 dated 2015-10-27

Title: Dynamic Panel Models with Orthogonal Reparameterization of Fixed Effects
Description: Implements the orthogonal reparameterization approach recommended by Lancaster (2002) to estimate dynamic panel models with fixed effects (and optionally: panel specific intercepts). The approach uses a likelihood-based estimator and produces estimates that are asymptotically unbiased as N goes to infinity, with a T as low as 2.
Author: Davor Cubranic [aut, cre], Mark Pickup [aut], Paul Gustafson [aut], Geoffrey Evans [aut]
Maintainer: Davor Cubranic <cubranic@stat.ubc.ca>

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Package MicroDatosEs updated to version 0.8.01 with previous version 0.7.1 dated 2015-12-14

Title: Utilities for Official Spanish Microdata
Description: Provides utilities for reading and processing microdata from Spanish official statistics with R.
Author: Carlos J. Gil Bellosta [aut, cre], Carlos Neira [ctb], Diego Paniagua Sánchez [ctb], José Luis Cañadas Reche [ctb]
Maintainer: Carlos J. Gil Bellosta <cgb@datanalytics.com>

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 MicroDatosEs-0.8.01/MicroDatosEs/R/censo2010.R                            |   34 
 MicroDatosEs-0.8.01/MicroDatosEs/R/defun2011.R                            |   21 
 MicroDatosEs-0.8.01/MicroDatosEs/R/ees2010.R                              |   21 
 MicroDatosEs-0.8.01/MicroDatosEs/R/epa2005.R                              |   23 
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 MicroDatosEs-0.8.01/MicroDatosEs/R/epf.2011.miembros.R                    |   39 
 MicroDatosEs-0.8.01/MicroDatosEs/R/read.fwf.microdata.R                   |   67 
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Package lhs updated to version 0.14 with previous version 0.13 dated 2016-01-18

Title: Latin Hypercube Samples
Description: Provides a number of methods for creating and augmenting Latin Hypercube Samples.
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>

Diff between lhs versions 0.13 dated 2016-01-18 and 0.14 dated 2016-08-09

 ChangeLog                         |   11 ++++++-----
 DESCRIPTION                       |    8 ++++----
 MD5                               |    8 ++++----
 R/augmentLHS.R                    |   35 ++++++++++++++++++++++-------------
 inst/unitTests/runit_augmentLHS.r |    7 +++++++
 5 files changed, 43 insertions(+), 26 deletions(-)

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New package icesSAG with initial version 1.0
Package: icesSAG
Date: 2016-08-08
Title: Stock Assessment Graphs Database Web Services
Authors@R: c(person("Colin", "Millar", role=c("aut"), email="colin.millar@ices.dk"), person("Scott", "Large", role=c("aut","cre"), email="scott.large@ices.dk"))
Version: 1.0
Description: Functions that access the web services of the ICES (International Council for the Exploration of the Sea) Stock Assessment Graphs database <https://datras.ices.dk/WebServices/Webservices.aspx>.
Depends: R (>= 3.3.1)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
URL: http://ices.dk/marine-data/tools/Pages/stock-assessment-graphs.aspx
RoxygenNote: 5.0.1
Suggests: testthat
Imports: RCurl, XML, utils, dplyr
NeedsCompilation: no
Packaged: 2016-08-09 06:04:37 UTC; scott.large
Author: Colin Millar [aut], Scott Large [aut, cre]
Maintainer: Scott Large <scott.large@ices.dk>
Repository: CRAN
Date/Publication: 2016-08-09 11:41:55

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Package DT updated to version 0.2 with previous version 0.1 dated 2015-06-09

Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables' library has been included in this R package. The package name 'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut, cre], Joe Cheng [ctb], JJ Allaire [ctb], jQuery contributors [ctb, cph] (jQuery in htmlwidgets/lib), SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib), Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib), Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib), Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib), RStudio Inc [cph]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between DT versions 0.1 dated 2015-06-09 and 0.2 dated 2016-08-09

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 DT-0.1/DT/man/copySWF.Rd                                                                            |only
 DT-0.2/DT/DESCRIPTION                                                                               |   18 
 DT-0.2/DT/MD5                                                                                       |  218 ++-
 DT-0.2/DT/NAMESPACE                                                                                 |   16 
 DT-0.2/DT/NEWS.md                                                                                   |only
 DT-0.2/DT/R/datatables.R                                                                            |  292 +++-
 DT-0.2/DT/R/format.R                                                                                |  133 +-
 DT-0.2/DT/R/package.R                                                                               |    3 
 DT-0.2/DT/R/shiny.R                                                                                 |  269 +++-
 DT-0.2/DT/R/utils.R                                                                                 |   14 
 DT-0.2/DT/README.md                                                                                 |    4 
 DT-0.2/DT/build/vignette.rds                                                                        |binary
 DT-0.2/DT/inst/doc/DT.html                                                                          |   82 -
 DT-0.2/DT/inst/examples/DT-click                                                                    |only
 DT-0.2/DT/inst/examples/DT-filter/rsconnect/shinyapps.io/yihui/DT-filter.dcf                        |    8 
 DT-0.2/DT/inst/examples/DT-info/Readme.md                                                           |    2 
 DT-0.2/DT/inst/examples/DT-info/rsconnect/shinyapps.io/yihui/DT-info.dcf                            |    7 
 DT-0.2/DT/inst/examples/DT-info/server.R                                                            |   10 
 DT-0.2/DT/inst/examples/DT-proxy                                                                    |only
 DT-0.2/DT/inst/examples/DT-radio                                                                    |only
 DT-0.2/DT/inst/examples/DT-reload                                                                   |only
 DT-0.2/DT/inst/examples/DT-rows/Readme.md                                                           |    2 
 DT-0.2/DT/inst/examples/DT-rows/rsconnect/shinyapps.io/yihui/DT-rows.dcf                            |    7 
 DT-0.2/DT/inst/examples/DT-rows/server.R                                                            |    7 
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 DT-0.2/DT/inst/examples/DT-selection                                                                |only
 DT-0.2/DT/inst/htmlwidgets/datatables.js                                                            |  642 ++++++++--
 DT-0.2/DT/inst/htmlwidgets/datatables.yaml                                                          |    2 
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 DT-0.2/DT/inst/htmlwidgets/lib/datatables/js/jquery.dataTables.min.js                               |  324 ++---
 DT-0.2/DT/inst/htmlwidgets/lib/datatables/license.txt                                               |    2 
 DT-0.2/DT/inst/htmlwidgets/lib/jquery/jquery.min.js                                                 |    9 
 DT-0.2/DT/inst/htmlwidgets/lib/selectize/selectize.min.js                                           |    6 
 DT-0.2/DT/man/dataTableAjax.Rd                                                                      |    5 
 DT-0.2/DT/man/datatable.Rd                                                                          |   38 
 DT-0.2/DT/man/formatCurrency.Rd                                                                     |   35 
 DT-0.2/DT/man/proxy.Rd                                                                              |only
 DT-0.2/DT/man/replaceData.Rd                                                                        |only
 DT-0.2/DT/man/styleInterval.Rd                                                                      |   13 
 81 files changed, 1621 insertions(+), 555 deletions(-)

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Package aws.signature updated to version 0.2.5 with previous version 0.2.2 dated 2016-05-22

Title: Amazon Web Services Request Signatures
Description: Generates request signatures for Amazon Web Services (AWS) APIs.
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

Diff between aws.signature versions 0.2.2 dated 2016-05-22 and 0.2.5 dated 2016-08-09

 DESCRIPTION                             |    8 ++++----
 MD5                                     |   20 ++++++++++++--------
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 13 files changed, 54 insertions(+), 19 deletions(-)

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New package ITGM with initial version 0.1
Package: ITGM
Type: Package
Title: Individual Tree Growth Modeling
Version: 0.1
Author: Clayton Vieira Fraga Filho, Miqueias Fernandes
Maintainer: Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>
Description: Individual tree model is an instrument to support the decision with regard to forest management. This package provides functions that let you work with data for this model. Also other support functions and extension related to this model are available.
License: GPL-2
LazyData: TRUE
Depends: Fgmutils (>= 0.8), R (>= 3.0)
Imports: gsubfn, data.table, sqldf, plyr
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-08-08 17:37:57 UTC; mfernandes
Repository: CRAN
Date/Publication: 2016-08-09 02:47:02

More information about ITGM at CRAN
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