Title: Sure Independence Screening
Description: Variable selection techniques are essential tools for model
selection and estimation in high-dimensional statistical models. Through this
publicly available package, we provide a unified environment to carry out
variable selection using iterative sure independence screening (SIS) and all
of its variants in generalized linear models and the Cox proportional hazards
model.
Author: Jianqing Fan, Yang Feng, Diego Franco Saldana, Richard Samworth, Yichao
Wu
Maintainer: Yang Feng <yang.feng@columbia.edu>
Diff between SIS versions 0.7-6 dated 2015-11-06 and 0.8-1 dated 2016-08-13
SIS-0.7-6/SIS/R/margcoef.R |only SIS-0.7-6/SIS/R/obtainindex.R |only SIS-0.7-6/SIS/R/partialfits.R |only SIS-0.7-6/SIS/R/print.SIS.R |only SIS-0.7-6/SIS/R/setsize.R |only SIS-0.7-6/SIS/man/print.SIS.Rd |only SIS-0.8-1/SIS/DESCRIPTION | 25 + SIS-0.8-1/SIS/MD5 | 35 +- SIS-0.8-1/SIS/NAMESPACE | 26 + SIS-0.8-1/SIS/R/SIS.R | 477 +++++++++++++++++++++++--------- SIS-0.8-1/SIS/R/predict.SIS.R | 218 ++++++++++++-- SIS-0.8-1/SIS/R/standardize.R | 50 ++- SIS-0.8-1/SIS/R/subfuns.R |only SIS-0.8-1/SIS/R/tune.fit.R | 217 ++++++++++---- SIS-0.8-1/SIS/data/leukemia.test.RData |binary SIS-0.8-1/SIS/data/leukemia.train.RData |binary SIS-0.8-1/SIS/data/prostate.test.RData |binary SIS-0.8-1/SIS/data/prostate.train.RData |binary SIS-0.8-1/SIS/man/SIS.Rd | 446 +++++++++++++++-------------- SIS-0.8-1/SIS/man/predict.SIS.Rd | 272 +++++++++--------- SIS-0.8-1/SIS/man/standardize.Rd | 94 +++--- SIS-0.8-1/SIS/man/tune.fit.Rd | 232 ++++++++------- 22 files changed, 1334 insertions(+), 758 deletions(-)
Title: Optimal Multilevel Matching using a Network Algorithm
Description: Performs multilevel matches for data with cluster-level treatments and individual-level outcomes using a network optimization algorithm. Functions for checking balance at the cluster and individual levels are also provided, as are methods for permutation-inference-based outcome analysis.
Author: Luke Keele and Sam Pimentel
Maintainer: Sam Pimentel <spi@wharton.upenn.edu>
Diff between matchMulti versions 1.1.3 dated 2016-05-18 and 1.1.4 dated 2016-08-13
DESCRIPTION | 8 +++---- MD5 | 14 ++++++------ R/matchMulti-internal.R | 12 ++++++---- R/matchMulti.R | 44 ++++++++++++++++++++++++++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/multiMatch_vignette.pdf |binary man/matchMulti.Rd | 10 ++++++-- 8 files changed, 68 insertions(+), 20 deletions(-)
Title: Stubbing Framework for R
Description: Create stubs of functions for use while testing.
Author: Sainath Adapa [aut, cre],
Nitin Madasu [aut]
Maintainer: Sainath Adapa <adapasainath@gmail.com>
Diff between stubthat versions 1.0.0 dated 2016-03-24 and 1.1.0 dated 2016-08-13
DESCRIPTION | 9 MD5 | 39 +-- NAMESPACE | 1 NEWS.md | 17 - R/compare_args.R |only R/missing_args.R |only R/stub.R | 197 +++-------------- R/stub_internal_funcs.R |only build/vignette.rds |binary inst/doc/stubthat.R | 178 ++++++++-------- inst/doc/stubthat.Rmd | 180 ++++++++-------- inst/doc/stubthat.html | 275 +++++++++++++------------ tests/testthat/test-called-times.r | 2 tests/testthat/test-function-as-arg.R | 1 tests/testthat/test-on-call-expects.r | 6 tests/testthat/test-on-call-strictly-expects.r | 6 tests/testthat/test-on-call.r | 6 tests/testthat/test-simple-cases.r | 99 ++++++--- tests/testthat/test-with-args.r | 2 tests/testthat/test-with-exact-args.r | 2 tests/testthat/test-with-mock.r | 1 vignettes/stubthat.Rmd | 180 ++++++++-------- 22 files changed, 582 insertions(+), 619 deletions(-)
Title: Analysis of Queueing Networks and Models
Description: It provides versatile tools for analysis of birth and death based Markovian Queueing Models
and Single and Multiclass Product-Form Queueing Networks.
It implements M/M/1, M/M/c, M/M/Infinite, M/M/1/K, M/M/c/K, M/M/c/c, M/M/1/K/K, M/M/c/K/K, M/M/c/K/m, M/M/Infinite/K/K,
Multiple Channel Open Jackson Networks, Multiple Channel Closed Jackson Networks,
Single Channel Multiple Class Open Networks, Single Channel Multiple Class Closed Networks
and Single Channel Multiple Class Mixed Networks.
Also it provides a B-Erlang, C-Erlang and Engset calculators.
This work is dedicated to the memory of D. Sixto Rios Insua.
Author: Pedro Canadilla
Maintainer: Pedro Canadilla <pedro.canadilla@gmail.com>
Diff between queueing versions 0.2.6 dated 2015-11-09 and 0.2.7 dated 2016-08-13
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/queueing.R | 2 +- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta
diversity in all their dimensions (taxon, phylogenetic and functional
diversity), whether communities are completely sampled or not. It allows
performing a number of analyses based on either species identities or
phylogenetic/functional trees depicting species relationships.
Author: Pedro Cardoso, Francois Rigal, Jose Carlos Carvalho
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between BAT versions 1.5.2 dated 2016-07-15 and 1.5.3 dated 2016-08-13
DESCRIPTION | 8 ++--- MD5 | 4 +- R/BAT.R | 85 +++++++++++++++++++++++++++++++++++++++++++++--------------- 3 files changed, 70 insertions(+), 27 deletions(-)
Title: Routines for Constructing and Evaluating Self-Organizing Maps
Description: A set of routines which are useful in constructing
and evaluating self-organizing maps (SOMs).
Author: Lutz Hamel [aut, cre],
Benjamin Ott [aut],
Gregory Breard [aut]
Maintainer: Lutz Hamel <hamel@cs.uri.edu>
Diff between popsom versions 3 dated 2016-02-15 and 4.0 dated 2016-08-13
popsom |only 1 file changed
Title: Generalized Linear Mixed Models via Monte Carlo Likelihood
Approximation
Description: Approximates the likelihood of a generalized linear mixed model using Monte Carlo likelihood approximation. Then maximizes the likelihood approximation to return maximum likelihood estimates, observed Fisher information, and other model information.
Author: Christina Knudson
Maintainer: Christina Knudson <christina@umn.edu>
Diff between glmm versions 1.0.4 dated 2015-07-24 and 1.1.0 dated 2016-08-13
DESCRIPTION | 10 +-- MD5 | 80 ++++++++++++++++------------- NAMESPACE | 14 +++-- R/getFamily.R | 21 +++++++ R/glmm.R | 98 ++++++++++++++++++++++++++++++------ R/mcse.R |only R/objfun.R | 7 +- R/pql.R | 41 +++++++++------ R/summary.mcla.R | 50 ++++++++++++++---- build/vignette.rds |binary inst/doc/intro.R | 18 ++++-- inst/doc/intro.Rnw | 95 +++++++++++++++++++++------------- inst/doc/intro.pdf |binary man/binomial.glmm.Rd |only man/glmm.Rd | 21 ++++++- man/mcse.Rd |only man/mcvcov.Rd |only man/se.Rd |only src/cp3.c | 30 ++++++----- src/cpp3.c | 30 ++++++----- src/cum3.c | 56 ++++++++++++-------- src/elGH.c | 10 +-- src/elc.c | 15 ++--- src/elval.c | 4 - src/mcse.c |only src/myheader.h | 19 ++++-- src/objfunc.c | 89 +++++++++++++++++++++----------- tests/BinBerTest.R |only tests/BinBerTest.Rout.save |only tests/basicBHtest.R | 2 tests/binomfamtest.R |only tests/binomfamtest.Rout.save |only tests/cfamilies.R | 12 ++-- tests/cfamilies.Rout.save | 19 +++--- tests/elTest.R | 18 +++--- tests/elTest.Rout.save | 25 ++++----- tests/familiesFiniteDiffs.R | 16 ++--- tests/familiesFiniteDiffs.Rout.save | 23 ++++---- tests/mcseTest.R |only tests/mcseTest.Rout.save |only tests/objfunTest.R | 17 +++--- tests/objfunTest.Rout.save | 23 ++++---- tests/salamFiniteDiffs.R | 5 + tests/salamFiniteDiffs.Rout.save | 17 +++--- tests/testpiecesBH.R | 8 +- tests/testpiecesBH.Rout.save | 14 ++--- vignettes/intro.Rnw | 95 +++++++++++++++++++++------------- 47 files changed, 641 insertions(+), 361 deletions(-)
Title: Latent Variable Models
Description: Estimation and simulation of latent variable models.
Author: Klaus K. Holst
Maintainer: Klaus K. Holst <kkho@biostat.ku.dk>
Diff between lava versions 1.4.3 dated 2016-04-11 and 1.4.4 dated 2016-08-13
DESCRIPTION | 16 +-- MD5 | 120 +++++++++++----------- NAMESPACE | 10 + NEWS | 27 +++++ R/Objective.R | 23 ++-- R/addattr.R | 3 R/addhook.R | 1 R/assoc.R | 1 R/bootstrap.R | 2 R/coef.R | 4 R/compare.R | 2 R/deriv.R | 27 +++-- R/diagtest.R | 212 ++++++++++++++++++++++++++++++++++------ R/distribution.R | 77 +++++++++++++- R/estimate.default.R | 87 ++++++++++++---- R/fixsome.R | 14 +- R/gkgamma.R | 96 ++++++++++++------ R/gof.R | 3 R/iid.R | 6 - R/information.R | 2 R/labels.R | 23 ++-- R/logLik.R | 6 - R/lvm.R | 7 - R/measurement.error.R | 113 ++++++++++++++++++++- R/merge.R | 1 R/moments.R | 22 ++-- R/multinomial.R | 3 R/multipletesting.R | 5 R/normal.R | 28 +++-- R/ordreg.R | 22 +++- R/pars.R | 4 R/pcor.R | 3 R/plot.R | 96 +++++++++++++----- R/plot.estimate.R | 16 +-- R/predict.R | 114 +++++++++++++++++++-- R/print.R | 31 +++-- R/regression.R | 4 R/residuals.R | 34 ------ R/sim.R | 94 +++++++++++------ R/sim.default.R | 62 ++++++++--- R/spaghetti.R | 35 +++--- R/startvalues.R | 24 ++++ R/utils.R | 8 + R/vec.R | 14 ++ R/zoperators.R | 6 - inst/doc/reference.pdf |binary man/closed.testing.Rd | 4 man/diagtest.Rd | 20 +++ man/estimate.default.Rd | 8 - man/gof.Rd | 4 man/lvm.Rd | 4 man/op_concat.Rd | 1 man/plot.lvm.Rd | 7 - man/predict.lvm.Rd | 3 man/predictlvm.Rd |only man/sim.Rd | 12 ++ man/spaghetti.Rd | 14 +- man/twostage.Rd |only tests/testthat/test-inference.R | 26 ++++ tests/testthat/test-misc.R | 7 - tests/testthat/test-model.R | 4 tests/testthat/test-sim.R | 20 +++ 62 files changed, 1222 insertions(+), 420 deletions(-)
Title: Add-in to Customize 'ggplot2' Themes
Description: Rstudio add-in that delivers a graphical interface for editing 'ggplot2' theme elements.
Author: Calli Gross [aut, cre],
Philipp Ottolinger [aut, ctb]
Maintainer: Calli Gross <ggthemeassist@icloud.com>
Diff between ggThemeAssist versions 0.1.4 dated 2016-04-23 and 0.1.5 dated 2016-08-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/updateDefaults.R | 10 +++++++++- 3 files changed, 14 insertions(+), 6 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: An R implementation of Ken Ludwig's popular Isoplot add-in to Microsoft Excel. Currently plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using the 'York' approach. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40A/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Future versions will include functionality for the Rb-Sr, Sm-Nd, Re-Os, fission track and cosmogenic nuclide methods, radial plots and banana diagrams. A graphical user interface is provided as an RStudio Shiny app at http://isoplotr.london-geochron.com. Offline access to this interface will be provided at a later point in time.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 0.6 dated 2016-07-27 and 0.7 dated 2016-08-13
DESCRIPTION | 11 ++--- MD5 | 56 +++++++++++++++----------- NAMESPACE | 10 ++++ R/UThHe.R |only R/age.R | 110 +++++++++++++++++++++++++++++++++++++++++++--------- R/agespectrum.R | 2 R/cad.R | 7 +++ R/concordia.R | 4 - R/constants.R | 12 +++++ R/documentation.R | 22 ++++++++++ R/helioplot.R |only R/io.R | 41 ++++++++++++++++--- R/isochron.R | 8 +-- R/kde.R | 13 ++++++ R/mds.R |only R/toolbox.R | 4 + data/examples.rda |binary inst/KDE.csv |only inst/UThHe.csv |only inst/average.csv |only inst/constants.json | 15 +++++-- inst/spectrum.csv |only man/age.Rd | 84 +++++++++++++++++++++++++++++++++++---- man/agespectrum.Rd | 6 +- man/cad.Rd | 4 + man/central.Rd |only man/examples.Rd | 22 ++++++++++ man/helioplot.Rd |only man/iratio.Rd | 4 + man/kde.Rd | 6 ++ man/lambda.Rd | 7 ++- man/mds.Rd |only man/read.data.Rd | 11 +++-- man/weightedmean.Rd | 4 + 34 files changed, 383 insertions(+), 80 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly
configurable drop-in replacements for base url() and download.file() with
better performance, support for encryption (https, ftps), gzip compression,
authentication, and other libcurl goodies. The core of the package implements a
framework for performing fully customized requests where data can be processed
either in memory, on disk, or streaming via the callback or connection
interfaces. Some knowledge of libcurl is recommended; for a more-user-friendly
web client see the 'httr' package which builds on this package with http
specific tools and logic.
Author: Jeroen Ooms [cre, aut],
Hadley Wickham [ctb],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between curl versions 1.1 dated 2016-07-26 and 1.2 dated 2016-08-13
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 3 +++ inst/doc/intro.R | 6 ++---- inst/doc/intro.Rmd | 6 ++---- inst/doc/intro.html | 23 ++++++++++------------- src/handle.c | 2 +- src/nslookup.c | 9 ++++++--- 8 files changed, 34 insertions(+), 35 deletions(-)
Title: Burns Statistics Miscellaneous
Description: Script search, corner, genetic optimization, permutation tests, write expect test.
Author: Pat Burns
Maintainer: Pat Burns <patrick@burns-stat.com>
Diff between BurStMisc versions 1.00 dated 2012-12-21 and 1.1 dated 2016-08-13
BurStMisc-1.00/BurStMisc/inst |only BurStMisc-1.1/BurStMisc/DESCRIPTION | 16 - BurStMisc-1.1/BurStMisc/MD5 | 38 +- BurStMisc-1.1/BurStMisc/NAMESPACE | 14 BurStMisc-1.1/BurStMisc/NEWS |only BurStMisc-1.1/BurStMisc/R/Cfrag.list.R |only BurStMisc-1.1/BurStMisc/R/corner.R | 96 +++--- BurStMisc-1.1/BurStMisc/R/dot_jpTogether.R |only BurStMisc-1.1/BurStMisc/R/genopt.R | 284 +++++++++--------- BurStMisc-1.1/BurStMisc/R/genopt.control.R | 18 - BurStMisc-1.1/BurStMisc/R/ntile.R |only BurStMisc-1.1/BurStMisc/R/permutation.test.discrete.R | 154 ++++----- BurStMisc-1.1/BurStMisc/R/permutation.test.fun.R | 96 +++--- BurStMisc-1.1/BurStMisc/R/print.permtstBurSt.R | 4 BurStMisc-1.1/BurStMisc/R/scriptSearch.R |only BurStMisc-1.1/BurStMisc/R/summary.genopt.R |only BurStMisc-1.1/BurStMisc/R/writeExpectTest.R |only BurStMisc-1.1/BurStMisc/man/Cfrag.list.Rd |only BurStMisc-1.1/BurStMisc/man/corner.Rd | 80 ++--- BurStMisc-1.1/BurStMisc/man/genopt.Rd | 198 ++++++------ BurStMisc-1.1/BurStMisc/man/genopt.control.Rd | 150 ++++----- BurStMisc-1.1/BurStMisc/man/ntile.Rd |only BurStMisc-1.1/BurStMisc/man/scriptSearch.Rd |only BurStMisc-1.1/BurStMisc/man/summary.genopt.Rd |only BurStMisc-1.1/BurStMisc/man/writeExpectTest.Rd |only BurStMisc-1.1/BurStMisc/tests |only 26 files changed, 589 insertions(+), 559 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Andre Simon [ctb] (the CSS files under inst/themes/ were derived from
the Highlight package http://www.andre-simon.de),
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Ben Baumer [ctb],
Brian Diggs [ctb],
Cassio Pereira [ctb],
David Robinson [ctb],
Donald Arseneau [ctb, cph] (the framed package at inst/misc/framed.sty),
Doug Hemken [ctb],
Duncan Murdoch [ctb],
Fabian Hirschmann [ctb],
Fitch Simeon [ctb],
Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty),
Gregoire Detrez [ctb],
Hadley Wickham [ctb],
Heewon Jeon [ctb],
Henrik Bengtsson [ctb],
Hiroaki Yutani [ctb],
Jake Burkhead [ctb],
James Manton [ctb],
Jared Lander [ctb],
Jason Punyon [ctb],
Jeff Arnold [ctb],
Jeremy Ashkenas [ctb, cph] (the CSS file at
inst/misc/docco-classic.css),
Jeremy Stephens [ctb],
Jim Hester [ctb],
Joe Cheng [ctb],
Johannes Ranke [ctb],
John Honaker [ctb],
John Muschelli [ctb],
Jonathan Keane [ctb],
JJ Allaire [ctb],
Johan Toloe [ctb],
Joseph Larmarange [ctb],
Julien Barnier [ctb],
Kaiyin Zhong [ctb],
Kevin K. Smith [ctb],
Kirill Mueller [ctb],
Kohske Takahashi [ctb],
Michael Friendly [ctb],
Michal Bojanowski [ctb],
Michel Kuhlmann [ctb],
Nacho Caballero [ctb],
Nick Salkowski [ctb],
Noam Ross [ctb],
Qiang Li [ctb],
Ramnath Vaidyanathan [ctb],
Richard Cotton [ctb],
Robert Krzyzanowski [ctb],
Romain Francois [ctb],
Scott Kostyshak [ctb],
Sebastian Meyer [ctb],
Sietse Brouwer [ctb],
Simon de Bernard [ctb],
Taiyun Wei [ctb],
Thibaut Assus [ctb],
Thibaut Lamadon [ctb],
Thomas Leeper [ctb],
Tom Torsney-Weir [ctb],
Trevor Davis [ctb],
Viktoras Veitas [ctb],
Weicheng Zhu [ctb],
Wush Wu [ctb],
Zachary Foster [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.13 dated 2016-05-09 and 1.14 dated 2016-08-13
knitr-1.13/knitr/inst/examples/Sweave.sty |only knitr-1.14/knitr/DESCRIPTION | 10 - knitr-1.14/knitr/MD5 | 94 +++++++------- knitr-1.14/knitr/NAMESPACE | 1 knitr-1.14/knitr/R/block.R | 27 +++- knitr-1.14/knitr/R/defaults.R | 4 knitr-1.14/knitr/R/engine.R | 137 ++++++++++++++++++++- knitr-1.14/knitr/R/highlight.R | 3 knitr-1.14/knitr/R/hooks-extra.R | 3 knitr-1.14/knitr/R/hooks-html.R | 8 - knitr-1.14/knitr/R/hooks-latex.R | 2 knitr-1.14/knitr/R/hooks-md.R | 7 - knitr-1.14/knitr/R/output.R | 1 knitr-1.14/knitr/R/pandoc.R | 20 +-- knitr-1.14/knitr/R/params.R | 9 - knitr-1.14/knitr/R/parser.R | 22 ++- knitr-1.14/knitr/R/plot.R | 35 +++-- knitr-1.14/knitr/R/table.R | 15 +- knitr-1.14/knitr/R/template.R | 3 knitr-1.14/knitr/R/utils-conversion.R | 2 knitr-1.14/knitr/R/utils.R | 6 knitr-1.14/knitr/build/knitr.pdf |binary knitr-1.14/knitr/build/vignette.rds |binary knitr-1.14/knitr/inst/doc/knit_expand.html | 4 knitr-1.14/knitr/inst/doc/knit_print.html | 16 +- knitr-1.14/knitr/inst/doc/knitr-intro.html | 10 - knitr-1.14/knitr/inst/doc/knitr-markdown.html | 2 knitr-1.14/knitr/inst/doc/knitr-refcard.pdf |binary knitr-1.14/knitr/inst/examples/download_count.csv | 14 +- knitr-1.14/knitr/inst/examples/knitr-beamer.Rnw | 20 --- knitr-1.14/knitr/inst/examples/knitr-graphics.Rnw | 38 +---- knitr-1.14/knitr/inst/examples/knitr-listings.Rnw | 5 knitr-1.14/knitr/inst/examples/knitr-manual.Rnw | 100 ++++++--------- knitr-1.14/knitr/inst/examples/knitr-minimal.Rnw | 5 knitr-1.14/knitr/inst/examples/knitr-packages.bib | 16 +- knitr-1.14/knitr/inst/examples/knitr-spin.html | 2 knitr-1.14/knitr/inst/examples/knitr-subfloats.Rnw | 10 - knitr-1.14/knitr/inst/examples/knitr-themes.Rnw | 7 - knitr-1.14/knitr/inst/examples/knitr-twocolumn.Rnw | 8 - knitr-1.14/knitr/inst/examples/knitr-twocolumn.lyx | 2 knitr-1.14/knitr/man/all_labels.Rd | 9 + knitr-1.14/knitr/man/chunk_hook.Rd | 3 knitr-1.14/knitr/man/kable.Rd | 5 knitr-1.14/knitr/man/knit_expand.Rd | 3 knitr-1.14/knitr/man/pandoc.Rd | 4 knitr-1.14/knitr/man/plot_crop.Rd | 2 knitr-1.14/knitr/man/spin.Rd | 2 knitr-1.14/knitr/tests/testit/test-table.R | 5 knitr-1.14/knitr/tools |only 49 files changed, 419 insertions(+), 282 deletions(-)
Title: A Collection of Robust Statistical Methods
Description: A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Author: Patrick Mair [cre, aut],
Rand Wilcox [aut]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between WRS2 versions 0.4-0 dated 2015-10-05 and 0.9-1 dated 2016-08-13
DESCRIPTION | 20 - MD5 | 108 ++++++---- NAMESPACE | 29 ++ R/Dqcomhd.R |only R/Qanova.R |only R/ZYmediate.R |only R/akp.effect.R |only R/ancova.R | 12 - R/bi2KMSv2.R |only R/binband.R |only R/disc2com.R |only R/discANOVA.R |only R/discmcp.R |only R/discstep.R |only R/hd.R |only R/mcp2a.R | 9 R/mcp2atm.R | 9 R/medpb2.R |only R/mestse.R |only R/pbad2way.R | 26 -- R/pbadepth1.R |only R/pball.R |only R/pbcor.R |only R/pbos.R |only R/print.ancova.R | 6 R/print.mcp.R | 1 R/print.med1way.R | 2 R/print.pb2.R | 4 R/print.pball.R |only R/print.pbcor.R |only R/print.qanova.R |only R/print.robmed.R |only R/print.robtab.R |only R/print.spp.R | 5 R/print.t1way.R | 3 R/print.twocor.R |only R/print.yuen.R | 3 R/qcomhd.R |only R/sppba.R | 18 + R/sppbb.R | 11 - R/sppbi.R | 20 + R/t1way.R | 31 ++ R/t3way.R | 4 R/twobinom.R |only R/twocor.R |only R/twopcor.R |only R/utilities.R |only R/winall.R | 37 ++- R/wincor.R | 10 R/yuen.effect.ci.R |only R/yuenbt.R | 11 - R/yuend.R | 3 build/vignette.rds |binary data/Leerkes.rda |only data/essays.rda |only inst/NEWS.Rd | 27 ++ inst/doc/WRS2.R | 122 ++++++++++- inst/doc/WRS2.Rnw | 554 ++++++++++++++++++++++++++++++++++++++++------------- inst/doc/WRS2.pdf |binary man/Leerkes.Rd |only man/ZYmediate.Rd |only man/binband.Rd |only man/essays.Rd |only man/pbcor.Rd |only man/qanova.Rd |only man/rmanovab.Rd | 4 man/t1way.Rd | 7 man/t2way.Rd | 10 man/trimse.Rd | 5 man/twocor.Rd |only man/yuen.Rd | 57 +++++ man/yuend.Rd | 27 ++ vignettes/WRS2.Rnw | 554 ++++++++++++++++++++++++++++++++++++++++------------- vignettes/WRS2.bib | 272 ++++++++++++++++++++++---- 74 files changed, 1569 insertions(+), 452 deletions(-)
Title: Search and Install Missing Packages
Description: Search R files for not installed packages and run install.packages.
Author: Calli Gross
Maintainer: Calli Gross <calli@calligross.de>
Diff between reinstallr versions 0.1.0 dated 2016-08-06 and 0.1.2 dated 2016-08-13
DESCRIPTION | 7 ++++--- MD5 | 14 +++++++++----- R/reinstallr.R | 7 +++++++ man/find_used_packages.Rd | 2 ++ man/show_missing_packages.Rd | 2 ++ man/show_package_stats.Rd | 2 ++ tests |only 7 files changed, 26 insertions(+), 8 deletions(-)
Title: Empirical Likelihood Ratio for Censored/Truncated Data
Description: Empirical likelihood ratio tests for means/quantiles/hazards
from possibly censored and/or truncated data. Now does regression too.
This version contains some C code.
Author: Mai Zhou. (Art Owen for el.test(). Yifan Yang for C code.)
Maintainer: Mai Zhou <mai@ms.uky.edu>
Diff between emplik versions 1.0-2 dated 2015-08-23 and 1.0-3 dated 2016-08-13
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ R/el.cen.EM.R | 5 +++-- inst/doc/FAQ.txt | 8 ++++---- inst/doc/MoreExamples.pdf |only man/el.cen.EM.Rd | 14 +++++++++++--- man/el.cen.EM2.Rd | 6 ++++-- src/cumsumsurv.c | 2 +- 8 files changed, 33 insertions(+), 21 deletions(-)
Title: Smoothing Splines for Large Samples
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Six marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, ordinal, and nominal. Random effects and parametric effects are also supported. Response can be Gaussian or non-Gaussian: Binomial, Poisson, Gamma, Inverse Gaussian, or Negative Binomial.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between bigsplines versions 1.0-8 dated 2016-03-17 and 1.0-9 dated 2016-08-13
ChangeLog | 25 +++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 33 +++++++++++++++++++-------------- NAMESPACE | 21 ++++++++++++++------- R/imagebar.R | 3 ++- R/num2col.R |only R/plotbar.R |only R/plotci.R |only R/predict.bigssa.R | 9 +++++++-- R/predict.bigssg.R | 12 +++++++++--- R/predict.bigssp.R | 9 +++++++-- man/bigsplines-internal.Rd | 1 + man/imagebar.Rd | 14 +++++++++++--- man/plotbar.Rd |only man/plotci.Rd |only man/predict.bigssa.Rd | 5 ++++- man/predict.bigssg.Rd | 5 ++++- man/predict.bigssp.Rd | 5 ++++- src/ordker.f | 44 +++++++------------------------------------- src/ordkersym.f | 36 ++++++++++-------------------------- 20 files changed, 128 insertions(+), 102 deletions(-)
Title: Display Multiple Images with Scaled Colors
Description: Functions for displaying (multiple) images with scaled colors, possibly with projected coordinates and for an irregular grid.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between autoimage versions 0.1 dated 2016-06-02 and 0.3.0 dated 2016-08-13
DESCRIPTION | 15 +- MD5 | 16 +-- NAMESPACE | 3 R/autoimage.R | 264 ++++++++++++++++++++++++++++++++-------------------- R/factor.image.R |only R/legend.scale.R | 3 R/narccap.R |only data |only man/autoimage.Rd | 111 +++++++++++---------- man/legend.scale.Rd | 2 man/narccap.Rd |only 11 files changed, 249 insertions(+), 165 deletions(-)
Title: A Cost-Minimal Regular Spanning Subgraph with TreeClust
Description: Construct minimum-cost regular spanning subgraph as part of a
non-parametric two-sample test for equality of distribution.
Author: Dave Ruth, Sam Buttrey
Maintainer: Sam Buttrey <buttrey@nps.edu>
Diff between AcrossTic versions 1.0-2 dated 2016-08-11 and 1.0-3 dated 2016-08-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/rRegMatch.R | 14 +++++++------- build/partial.rdb |binary 4 files changed, 14 insertions(+), 14 deletions(-)