Wed, 17 Aug 2016

Package ucminf updated to version 1.1-4 with previous version 1.1-3 dated 2012-01-07

Title: General-Purpose Unconstrained Non-Linear Optimization
Description: An algorithm for general-purpose unconstrained non-linear optimization. The algorithm is of quasi-Newton type with BFGS updating of the inverse Hessian and soft line search with a trust region type monitoring of the input to the line search algorithm. The interface of 'ucminf' is designed for easy interchange with 'optim'.
Author: Hans Bruun Nielsen and Stig Bousgaard Mortensen
Maintainer: Stig Bousgaard Mortensen <stigbm@gmail.com>

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Package glmm updated to version 1.1.1 with previous version 1.1.0 dated 2016-08-13

Title: Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation
Description: Approximates the likelihood of a generalized linear mixed model using Monte Carlo likelihood approximation. Then maximizes the likelihood approximation to return maximum likelihood estimates, observed Fisher information, and other model information.
Author: Christina Knudson
Maintainer: Christina Knudson <christina@umn.edu>

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Package elastic updated to version 0.7.4 with previous version 0.7.2 dated 2016-08-03

Title: General Purpose Interface to 'Elasticsearch'
Description: Connect to 'Elasticsearch', a 'NoSQL' database built on the 'Java' Virtual Machine. Interacts with the 'Elasticsearch' 'HTTP' 'API' (<https://www.elastic.co/products/elasticsearch>), including functions for setting connection details to 'Elasticsearch' instances, loading bulk data, searching for documents with both 'HTTP' query variables and 'JSON' based body requests. In addition, 'elastic' provides functions for interacting with 'APIs' for 'indices', documents, nodes, clusters, an interface to the cat 'API', and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package vtreat updated to version 0.5.27 with previous version 0.5.26 dated 2016-07-12

Title: Simple Variable Treatment
Description: A data.frame processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner. Prepares variables so that data has fewer exceptional cases, making it easier to safely use models in production. Common problems 'vtreat' defends against: Inf, NA, too many categorical levels, rare categorical levels, new categorical levels (levels seen during application, but not during training). 'vtreat::prepare' should be used as you would use 'model.matrix'.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>

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Package resampledata updated to version 0.2.0 with previous version 0.1.0 dated 2016-06-13

Title: Data Sets for Mathematical Statistics with Resampling in R
Description: Package of data sets from "Mathematical Statistics with Resampling in R" (2011) by Laura Chihara and Tim Hesterberg.
Author: Laura Chihara [aut], Tim Hesterberg [aut], Albert Y. Kim [cre]
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>

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Package oXim updated to version 1.0.1 with previous version 1.0.0 dated 2016-08-02

Title: Oxycline Index from Matrix Echograms
Description: Tools to get oxycline depth from echogram matrix using median-filter and 2D-convolution based algorithms.
Author: Wencheng Lau-Medrano [aut, cre], Ricardo Oliveros-Ramos [ctb]
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>

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Package CEGO updated to version 2.1.0 with previous version 2.0.0 dated 2015-10-06

Title: Combinatorial Efficient Global Optimization
Description: Model building, surrogate model based optimization and Efficient Global Optimization in combinatorial or mixed search spaces.
Author: Martin Zaefferer <mzaefferer@gmail.com>
Maintainer: Martin Zaefferer <mzaefferer@gmail.com>

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Package SHELF updated to version 1.2.0 with previous version 1.1.0 dated 2016-02-05

Title: Tools to Support the Sheffield Elicitation Framework (SHELF)
Description: Implements various methods for eliciting a probability distribution for a single parameter from an expert or a group of experts. The expert provides a small number of probability judgements, corresponding to points on his or her cumulative distribution function. A range of parametric distributions can then be fitted and displayed, with feedback provided in the form of fitted probabilities and percentiles. A graphical interface for the roulette elicitation method is also provided. For multiple experts, a weighted linear pool can be calculated. Also includes functions for eliciting beliefs about population distributions.
Author: Jeremy Oakley
Maintainer: Jeremy Oakley <j.oakley@sheffield.ac.uk>

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Package gMWT updated to version 1.1 with previous version 1.0 dated 2015-06-10

Title: Generalized Mann-Whitney Type Tests
Description: Generalized Mann-Whitney type tests based on probabilistic indices and new diagnostic plots.
Author: Daniel Fischer , Hannu Oja
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>

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New package GAS with initial version 0.1.1
Package: GAS
Type: Package
Title: Generalized Autoregressive Score Models
Version: 0.1.1
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Description: Simulate, Estimate and Forecast using univariate and multivariate GAS models.
License: GPL-3
LazyData: TRUE
Imports: Rcpp (>= 0.12.2)
LinkingTo: Rcpp, RcppArmadillo
Depends: R (>= 2.10), Rsolnp, methods, MASS, xts, numDeriv, zoo
NeedsCompilation: yes
Packaged: 2016-08-17 13:01:47 UTC; Leopoldo
Repository: CRAN
Date/Publication: 2016-08-17 20:03:14

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Package cleangeo updated to version 0.2 with previous version 0.1-1 dated 2015-10-01

Title: Cleaning Geometries from Spatial Objects
Description: Provides a set of utility tools to inspect spatial objects, facilitate handling and reporting of topology errors and geometry validity issues. Finally, it provides a geometry cleaner that will fix all geometry problems, and eliminate (at least reduce) the likelihood of having issues when doing spatial data processing.
Author: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>

Diff between cleangeo versions 0.1-1 dated 2015-10-01 and 0.2 dated 2016-08-17

 DESCRIPTION                                      |   12 -
 MD5                                              |   26 ++-
 NAMESPACE                                        |    3 
 R/cleangeo.R                                     |    4 
 R/clgeo_Clean.R                                  |  169 +++++++++++++++--------
 R/clgeo_CleanByPolygonation.R                    |only
 README.md                                        |   11 +
 inst/doc/quickstart.Rmd                          |    6 
 inst/doc/quickstart.html                         |   62 ++++----
 man/cleangeo.Rd                                  |    4 
 man/clgeo_Clean.Rd                               |   20 ++
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 tests/testthat/test_Clean.R                      |  158 +++++++++++++++++++++
 vignettes/quickstart.Rmd                         |    6 
 16 files changed, 367 insertions(+), 114 deletions(-)

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New package banxicoR with initial version 0.9.0
Package: banxicoR
Type: Package
Title: Download Data from the Bank of Mexico
Version: 0.9.0
Author: Eduardo Flores
Maintainer: Eduardo Flores <eduardo@enelmargen.org>
Description: Provides functions to scrape IQY calls to Bank of Mexico, downloading and ordering the data conveniently.
License: CC0
Imports: rvest, stringr, xml2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-17 13:39:01 UTC; eduardoflores
Repository: CRAN
Date/Publication: 2016-08-17 20:05:25

More information about banxicoR at CRAN
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Package ROI.plugin.nloptr updated to version 0.2-4 with previous version 0.2-3 dated 2016-06-19

Title: 'ROI'-Plugin 'NLOPTR'
Description: Enhances the R Optimization Infrastructure ('ROI') package with the 'NLopt' solver for solving nonlinear optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>

Diff between ROI.plugin.nloptr versions 0.2-3 dated 2016-06-19 and 0.2-4 dated 2016-08-17

 DESCRIPTION         |   14 +++----
 MD5                 |    8 ++--
 NAMESPACE           |    1 
 R/solve.R           |   31 +++++++++++++++--
 tests/test_nloptr.R |   93 ++++++++++++++++++++++++++++++++++++++++++++--------
 5 files changed, 119 insertions(+), 28 deletions(-)

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Package rsdmx updated to version 0.5-5 with previous version 0.5-4 dated 2016-06-18

Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents exchanged through the Statistical Data and Metadata Exchange (SDMX) framework, currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre], Matthieu Stigler [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>

Diff between rsdmx versions 0.5-4 dated 2016-06-18 and 0.5-5 dated 2016-08-17

 DESCRIPTION                                     |   10 +++--
 MD5                                             |   41 ++++++++++++------------
 NAMESPACE                                       |    2 +
 R/Class-SDMXDataFlow.R                          |    7 ++--
 R/Class-SDMXStructureSpecificTimeSeriesData.R   |only
 R/SDMXCode-methods.R                            |    1 
 R/SDMXCodelist-methods.R                        |    4 ++
 R/SDMXCompactData-methods.R                     |   32 +++++++++++++-----
 R/SDMXConcept-methods.R                         |   12 ++++---
 R/SDMXConceptScheme-methods.R                   |    4 ++
 R/SDMXData-methods.R                            |   14 +++++++-
 R/SDMXDataFlow-methods.R                        |    7 +++-
 R/SDMXDataStructure-methods.R                   |    4 ++
 R/SDMXHeader-methods.R                          |    4 +-
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 R/readSDMX.R                                    |   41 ++++++++++++++++++------
 R/rsdmx.R                                       |    4 +-
 README.md                                       |    6 +--
 man/SDMXDataFlow.Rd                             |    2 +
 man/SDMXStructureSpecificTimeSeriesData.Rd      |only
 man/rsdmx.Rd                                    |    4 +-
 tests/testthat/test_DataFlows.R                 |    1 
 23 files changed, 142 insertions(+), 60 deletions(-)

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Package influence.ME updated to version 0.9-7 with previous version 0.9-6 dated 2015-07-24

Title: Tools for Detecting Influential Data in Mixed Effects Models
Description: Provides a collection of tools for detecting influential cases in generalized mixed effects models. It analyses models that were estimated using lme4. The basic rationale behind identifying influential data is that when iteratively single units are omitted from the data, models based on these data should not produce substantially different estimates. To standardize the assessment of how influential a (single group of) observation(s) is, several measures of influence are common practice, such as DFBETAS and Cook's Distance. In addition, we provide a measure of percentage change of the fixed point estimates and a simple procedure to detect changing levels of significance.
Author: Rense Nieuwenhuis, Ben Pelzer, Manfred te Grotenhuis
Maintainer: Rense Nieuwenhuis <rense.nieuwenhuis@sofi.su.se>

Diff between influence.ME versions 0.9-6 dated 2015-07-24 and 0.9-7 dated 2016-08-17

 DESCRIPTION                 |    8 ++++----
 MD5                         |   10 +++++-----
 R/exclude.influence.R       |    9 ++++++++-
 R/influence.R               |   10 +++++++++-
 man/influence.ME-package.Rd |   10 +++++-----
 man/influence.mer.Rd        |   19 ++++++++++++-------
 6 files changed, 43 insertions(+), 23 deletions(-)

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New package phybreak with initial version 0.1.0
Package: phybreak
Type: Package
Title: Analysis of Outbreaks with Sequence Data
Version: 0.1.0
Date: 2016-08-15
Authors@R: person("Don", "Klinkenberg", email = "don@xs4all.nl", role = c("aut", "cre"))
Description: Implementation the outbreak analysis method described by Klinkenberg et al (2016) <doi:10.1101/069195>. Simulate outbreaks, analyse datasets by creating samples from the posterior distribution with a Markov-Chain Monte Carlo sampler, and summarize the output.
License: GPL (>= 2)
LazyData: TRUE
Depends: R(>= 3.1.0), phangorn, ape
Imports: Rcpp (>= 0.12.1), methods, stats, utils
Suggests: coda, phytools, OutbreakTools
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-17 10:05:00 UTC; don
Author: Don Klinkenberg [aut, cre]
Maintainer: Don Klinkenberg <don@xs4all.nl>
Repository: CRAN
Date/Publication: 2016-08-17 12:23:57

More information about phybreak at CRAN
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New package opera with initial version 1.0
Package: opera
Type: Package
Title: Online Prediction by Expert Aggregation
Version: 1.0
Date: 2016-08-11
Author: Pierre Gaillard [cre, aut], Yannig Goude [aut]
Maintainer: Pierre Gaillard <pierre@gaillard.me>
Copyright: EDF R&D 2012-2015
Description: Misc methods to form online predictions, for regression-oriented time-series, by combining a finite set of forecasts provided by the user.
License: LGPL
URL: http://pierre.gaillard.me/opera.html
BugReports: https://github.com/dralliag/opera/issues
Depends: R (>= 3.1.0)
Imports: quadprog, quantreg, RColorBrewer
Suggests: testthat, splines, caret, mgcv, survival, knitr, gbm
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-17 09:16:55 UTC; Pierre
Repository: CRAN
Date/Publication: 2016-08-17 12:26:24

More information about opera at CRAN
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Package decompr updated to version 4.5.0 with previous version 4.1.0 dated 2015-06-16

Title: Global-Value-Chain Decomposition
Description: Two global-value-chain decompositions are implemented. Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu, 2013) algorithm splits bilateral gross exports into 16 value-added components. Secondly, the Leontief decomposition (default) derives the value added origin of exports by country and industry, which is also based on Wang, Wei, and Zhu (Wang, Z., S.-J. Wei, and K. Zhu. 2013. "Quantifying International Production Sharing at the Bilateral and Sector Levels.").
Author: Bastiaan Quast [aut, cre], Fei Wang [aut], Victor Kummritz [aut], Oliver Reiter [ctb]
Maintainer: Bastiaan Quast <bquast@gmail.com>

Diff between decompr versions 4.1.0 dated 2015-06-16 and 4.5.0 dated 2016-08-17

 DESCRIPTION                    |   24 -
 MD5                            |   60 +-
 NAMESPACE                      |   14 
 NEWS                           |  324 +++++++------
 R/decomp.R                     |  192 ++++----
 R/decompr.R                    |   86 +--
 R/leontief.R                   |  209 ++++-----
 R/load_tables.R                |   94 ++--
 R/load_tables_vectors.R        |  445 +++++++++----------
 R/wwz.R                        |  780 ++++++++++++++++++---------------
 README.md                      |  206 ++++----
 build/vignette.rds             |binary
 inst/CITATION                  |   36 -
 inst/doc/decompr.R             |   60 +-
 inst/doc/decompr.Rmd           |  120 ++---
 inst/doc/decompr.html          |  951 ++++++++++++++++++++---------------------
 man/countries.Rd               |   20 
 man/decomp.Rd                  |  175 +++----
 man/decompr.Rd                 |   49 +-
 man/final.Rd                   |   20 
 man/industries.Rd              |   20 
 man/inter.Rd                   |   20 
 man/leontief.Rd                |   90 +--
 man/load_tables.Rd             |   66 +-
 man/load_tables_vectors.Rd     |  113 ++--
 man/out.Rd                     |   20 
 man/wwz.Rd                     |   88 +--
 tests/testthat.R               |    8 
 tests/testthat/test_leontief.R |  141 +++---
 tests/testthat/test_wwz.R      |  118 ++++-
 vignettes/decompr.Rmd          |  120 ++---
 31 files changed, 2458 insertions(+), 2211 deletions(-)

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Package subscore updated to version 1.3 with previous version 1.2 dated 2015-11-21

Title: Computing Subscores in Classical Test Theory
Description: Functions for computing test subscores using methods applicable to classical test theory (CTT) scores. This package enables two sets of subscoring methods within the framework of CTT: (1) Wainer's augmentation method, and (2) Haberman's three subscoring methods. The package also includes the function to compute Proportional Reduction of Mean Squared Errors (PRMSEs) proposed by Haberman's, which are used to examine whether test subscores are of added value.
Author: Shenghai Dai [aut, cre], Xiaolin Wang [aut], Dubravka Svetina [aut]
Maintainer: Shenghai Dai <dais@indiana.edu>

Diff between subscore versions 1.2 dated 2015-11-21 and 1.3 dated 2016-08-17

 subscore-1.2/subscore/R/CTTsub.RegOnSub.r       |only
 subscore-1.2/subscore/R/CTTsub.RegOnTot.R       |only
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 subscore-1.3/subscore/NAMESPACE                 |    9 -
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 subscore-1.3/subscore/man/CTTsub.Rd             |   85 +++++++++----
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 subscore-1.3/subscore/man/test.data.Rd          |   11 -
 23 files changed, 292 insertions(+), 151 deletions(-)

More information about subscore at CRAN
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New package RRate with initial version 1.0
Package: RRate
Type: Package
Title: Estimating Replication Rate for Genome-Wide Association Studies
Version: 1.0
Date: 2016-08-16
Author: Wei Jiang, Jing-Hao Xue and Weichuan Yu
Maintainer: Wei Jiang <wjiangaa@connect.ust.hk>
Description: Replication Rate (RR) is the probability of replicating a statistically significant association in genome-wide association studies. This R-package provide the estimation method for replication rate which makes use of the summary statistics from the primary study. We can use the estimated RR to determine the sample size of the replication study, and to check the consistency between the results of the primary study and those of the replication study.
License: GPL-3
Depends: R (>= 2.10), splines
NeedsCompilation: no
Packaged: 2016-08-17 03:41:41 UTC; Brian
Repository: CRAN
Date/Publication: 2016-08-17 10:40:27

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Package Rborist updated to version 0.1-2 with previous version 0.1-1 dated 2016-04-27

Title: Extensible, Parallelizable Implementation of the Random Forest Algorithm
Description: Scalable decision tree training and prediction.
Author: Mark Seligman
Maintainer: Mark Seligman <mseligman@suiji.org>

Diff between Rborist versions 0.1-1 dated 2016-04-27 and 0.1-2 dated 2016-08-17

 Rborist-0.1-1/Rborist/src/rcppArmadilloSample.cc |only
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 Rborist-0.1-2/Rborist/DESCRIPTION                |   12 
 Rborist-0.1-2/Rborist/MD5                        |   92 ++--
 Rborist-0.1-2/Rborist/NAMESPACE                  |    2 
 Rborist-0.1-2/Rborist/R/PreFormat.R              |only
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 Rborist-0.1-2/Rborist/R/Rborist.default.R        |   18 
 Rborist-0.1-2/Rborist/inst/NEWS                  |   14 
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 Rborist-0.1-2/Rborist/src/bv.cc                  |   87 ++-
 Rborist-0.1-2/Rborist/src/bv.h                   |  206 +++++++--
 Rborist-0.1-2/Rborist/src/callback.cc            |   49 +-
 Rborist-0.1-2/Rborist/src/callback.h             |    6 
 Rborist-0.1-2/Rborist/src/forest.cc              |   22 
 Rborist-0.1-2/Rborist/src/index.cc               |  278 +++++-------
 Rborist-0.1-2/Rborist/src/index.h                |  116 +++--
 Rborist-0.1-2/Rborist/src/leaf.cc                |   19 
 Rborist-0.1-2/Rborist/src/leaf.h                 |    7 
 Rborist-0.1-2/Rborist/src/predblock.cc           |   27 -
 Rborist-0.1-2/Rborist/src/predblock.h            |   30 +
 Rborist-0.1-2/Rborist/src/predict.cc             |  124 ++++-
 Rborist-0.1-2/Rborist/src/predict.h              |   37 +
 Rborist-0.1-2/Rborist/src/pretree.cc             |    4 
 Rborist-0.1-2/Rborist/src/pretree.h              |    2 
 Rborist-0.1-2/Rborist/src/quant.cc               |   22 
 Rborist-0.1-2/Rborist/src/quant.h                |    3 
 Rborist-0.1-2/Rborist/src/rcppForest.h           |    7 
 Rborist-0.1-2/Rborist/src/rcppLeaf.h             |   11 
 Rborist-0.1-2/Rborist/src/rcppMonolith.cc        |  506 ++++++++++++----------
 Rborist-0.1-2/Rborist/src/rcppPredblock.h        |   10 
 Rborist-0.1-2/Rborist/src/rcppSample.h           |    7 
 Rborist-0.1-2/Rborist/src/rowrank.cc             |   82 ++-
 Rborist-0.1-2/Rborist/src/rowrank.h              |   31 -
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 Rborist-0.1-2/Rborist/src/samplepred.cc          |   12 
 Rborist-0.1-2/Rborist/src/samplepred.h           |   66 +-
 Rborist-0.1-2/Rborist/src/splitpred.cc           |  515 +++++++++--------------
 Rborist-0.1-2/Rborist/src/splitpred.h            |  177 ++-----
 Rborist-0.1-2/Rborist/src/splitsig.cc            |   45 --
 Rborist-0.1-2/Rborist/src/splitsig.h             |   20 
 Rborist-0.1-2/Rborist/src/train.cc               |   29 -
 Rborist-0.1-2/Rborist/src/train.h                |   10 
 53 files changed, 1504 insertions(+), 1231 deletions(-)

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New package rpinterest with initial version 0.3.1
Package: rpinterest
Type: Package
Title: Access Pinterest API
Version: 0.3.1
Date: 2016-08-17
Author: Colin FAY
Maintainer: Colin FAY <contact@colinfay.me>
Description: Get information (boards, pins and users) from the Pinterest <http://www.pinterest.com> API.
License: GPL-3
LazyData: TRUE
Imports: httr, rjson, magrittr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-17 07:26:06 UTC; JonathanMorel
Repository: CRAN
Date/Publication: 2016-08-17 11:00:03

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Package meta updated to version 4.5-0 with previous version 4.4-1 dated 2016-06-20

Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker, "Meta-Analysis with R" (2015): - fixed effect and random effects meta-analysis; - several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble); - statistical tests and trim-and-fill method to evaluate bias in meta-analysis; - import data from 'RevMan 5'; - prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model; - cumulative meta-analysis and leave-one-out meta-analysis; - meta-regression (if R package 'metafor' is installed); - generalised linear mixed models (if R packages 'metafor', 'lme4', 'numDeriv', and 'BiasedUrn' are installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>

Diff between meta versions 4.4-1 dated 2016-06-20 and 4.5-0 dated 2016-08-17

 DESCRIPTION            |    8 
 MD5                    |  187 ++--
 NAMESPACE              |    8 
 NEWS                   |  124 ++
 R/asin2p.R             |    8 
 R/baujat.meta.R        |    2 
 R/bubble.metareg.R     |    6 
 R/bylabel.R            |only
 R/bylevs.R             |    2 
 R/byvarname.R          |   10 
 R/calcH.R              |   20 
 R/catmeth.R            |  182 ++--
 R/chkchar.R            |   10 
 R/chkclass.R           |    4 
 R/chklength.R          |    8 
 R/chklevel.R           |   12 
 R/chklogical.R         |    6 
 R/chkmetafor.R         |    4 
 R/chkmiss.R            |    4 
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 R/ci.R                 |   36 
 R/ciAgrestiCoull.R     |   12 
 R/ciSimpleAsymptotic.R |   28 
 R/ciWilsonScore.R      |   24 
 R/cilayout.R           |    4 
 R/crtitle.R            |   28 
 R/estimate.missing.R   |   12 
 R/forest.meta.R        | 2193 +++++++++++++++++++++++++++----------------------
 R/format.p.R           |   10 
 R/format.tau.R         |   10 
 R/funnel.default.R     |   60 -
 R/funnel.meta.R        |  175 +--
 R/hetcalc.R            |   68 -
 R/hypergeometric.R     |  120 +-
 R/int2num.R            |    2 
 R/isquared.R           |   10 
 R/kentau.R             |   52 -
 R/labbe.default.R      |  310 ++++--
 R/labbe.metabin.R      |  350 +++++--
 R/linregcore.R         |   20 
 R/logit2p.R            |    4 
 R/meta-internal.R      |   38 
 R/metabias.default.R   |   80 -
 R/metabias.meta.R      |  176 +--
 R/metabias.rm5.R       |   29 
 R/metabin.R            |  427 +++++----
 R/metacont.R           |  192 ++--
 R/metacor.R            |  114 +-
 R/metacr.R             |  455 +++++-----
 R/metacum.R            |  213 ++--
 R/metagen.R            |   30 
 R/metainc.R            |  207 ++--
 R/metainf.R            |  211 ++--
 R/metaprop.R           |  259 +++--
 R/metareg.R            |    4 
 R/npn.R                |    2 
 R/p.ci.R               |   32 
 R/p2logit.R            |    4 
 R/paulemandel.R        |   80 +
 R/print.meta.R         |  191 ++--
 R/print.metabias.R     |   12 
 R/print.rm5.R          |    2 
 R/print.summary.meta.R |  277 +++---
 R/print.summary.rm5.R  |    8 
 R/radial.default.R     |   54 -
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 R/read.mtv.R           |  162 +--
 R/read.rm5.R           |  368 ++++----
 R/rmSpace.R            |   14 
 R/setchar.R            |   20 
 R/setstudlab.R         |    4 
 R/settings.meta.R      |   38 
 R/subgroup.R           |  268 +++--
 R/summary.meta.R       |  249 ++---
 R/summary.rm5.R        |   10 
 R/trimfill.default.R   |  185 ++--
 R/trimfill.meta.R      |  232 ++---
 R/update.meta.R        |  471 +++++-----
 R/updateversion.R      |    4 
 R/warnarg.R            |   12 
 R/weights.meta.R       |only
 R/xlab.R               |   55 -
 R/z2cor.R              |    4 
 man/forest.Rd          |  181 ++--
 man/labbe.Rd           |  143 ++-
 man/metabin.Rd         |    5 
 man/metacont.Rd        |    5 
 man/metacor.Rd         |    5 
 man/metagen.Rd         |   15 
 man/metainc.Rd         |    9 
 man/metaprop.Rd        |   51 -
 man/print.meta.Rd      |   21 
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 96 files changed, 5533 insertions(+), 4332 deletions(-)

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Package instaR updated to version 0.2.4 with previous version 0.2.2 dated 2015-11-10

Title: Access to Instagram API via R
Description: Provides an interface to the Instagram API <https://instagram.com/ developer/>, which allows R users to download public pictures filtered by hashtag, popularity, user or location, and to access public users' profile data.
Author: Pablo Barbera [aut, cre], Tiago Dantas [ctb], Jonne Guyt [ctb]
Maintainer: Pablo Barbera <pbarbera@usc.edu>

Diff between instaR versions 0.2.2 dated 2015-11-10 and 0.2.4 dated 2016-08-17

 ChangeLog              |    5 +++-
 DESCRIPTION            |   17 +++++++++-------
 MD5                    |   50 ++++++++++++++++++++++++-------------------------
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More information about instaR at CRAN
Permanent link

Package ghyp updated to version 1.5.7 with previous version 1.5.6 dated 2013-02-05

Title: A Package on Generalized Hyperbolic Distribution and Its Special Cases
Description: Detailed functionality for working with the univariate and multivariate Generalized Hyperbolic distribution and its special cases (Hyperbolic (hyp), Normal Inverse Gaussian (NIG), Variance Gamma (VG), skewed Student-t and Gaussian distribution). Especially, it contains fitting procedures, an AIC-based model selection routine, and functions for the computation of density, quantile, probability, random variates, expected shortfall and some portfolio optimization and plotting routines as well as the likelihood ratio test. In addition, it contains the Generalized Inverse Gaussian distribution.
Author: David Luethi, Wolfgang Breymann
Maintainer: Marc Weibel <marc.weibel@zhaw.ch>

Diff between ghyp versions 1.5.6 dated 2013-02-05 and 1.5.7 dated 2016-08-17

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 ghyp-1.5.7/ghyp/man/ghyp-package.Rd                               |    6 
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 15 files changed, 2780 insertions(+), 2766 deletions(-)

More information about ghyp at CRAN
Permanent link

Package FedData updated to version 2.0.9 with previous version 2.0.8 dated 2016-03-10

Title: Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package allows for retrieval of five datasets: The National Elevation Dataset digital elevation models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic (SSURGO) database from the National Cooperative Soil Survey (NCSS), which is led by the Natural Resources Conservation Service (NRCS) under the USDA; the Global Historical Climatology Network (GHCN), coordinated by National Climatic Data Center at NOAA; and the International Tree Ring Data Bank. Additional data sources are in the works, including global DEM resources (ETOPO1, ETOPO5, ETOPO30, SRTM), global soils (HWSD), MODIS satellite data products, the National Atlas (US), Natural Earth, PRISM, and WorldClim.
Author: R. Kyle Bocinsky [aut, cre], Dylan Beaudette [ctb], Scott Chamberlain [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>

Diff between FedData versions 2.0.8 dated 2016-03-10 and 2.0.9 dated 2016-08-17

 DESCRIPTION                        |   13 +++--
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More information about FedData at CRAN
Permanent link

New package GenomicTools with initial version 0.1
Package: GenomicTools
Type: Package
Title: Collection of Tools for Genomic Data Analysis
Version: 0.1
Date: 2016-08-15
Author: Daniel Fischer
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Depends: R (>= 3.2), gMWT (>= 1.0), Rcpp (>= 0.9.13), data.table (>= 1.9.6)
Imports: circlize, stringr, snpStats
LinkingTo: Rcpp, RcppArmadillo
Description: A loose collection of tools for the analysis of expression and genotype data, currently with the main focus on (e)QTL and MDR analysis.
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2016-08-17 05:31:59 UTC; fischuu
Repository: CRAN
Date/Publication: 2016-08-17 10:40:26

More information about GenomicTools at CRAN
Permanent link

Package eurostat updated to version 1.2.24 with previous version 1.2.21 dated 2016-03-10

Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database <http://ec.europa.eu/eurostat> together with search and manipulation utilities.
Author: Lahti Leo [aut, cre], Biecek Przemyslaw [aut], Kainu Markus [aut], Huovari Janne [aut]
Maintainer: Lahti Leo <louhos@googlegroups.com>

Diff between eurostat versions 1.2.21 dated 2016-03-10 and 1.2.24 dated 2016-08-17

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More information about eurostat at CRAN
Permanent link

Package edgar updated to version 1.0.5 with previous version 1.0.4 dated 2015-11-21

Title: Platform for EDGAR Filing Management
Description: In the USA, firms file different forms with the U.S. Securities and Exchange Commission (SEC) through EDGAR (Electronic Data Gathering, Analysis, and Retrieval system). EDGAR automated system collects all the different necessary filings and make it publicly available. Secondly, it validates collected filings, then perform indexing and accepting of these submitted forms. Investors, regulators, and researchers often require these forms for various purposes. "edgar" R package helps various individuals in data gathering, management, and visualization. This package downloads SEC EDGAR quarterly master index, daily master index, filings from SEC.org site and perform sentiment analysis of filing.
Author: Gunratan Lonare <lonare.gunratan@gmail.com>, Bharat Patil <bharatspatil@gmail.com>
Maintainer: Gunratan Lonare <lonare.gunratan@gmail.com>

Diff between edgar versions 1.0.4 dated 2015-11-21 and 1.0.5 dated 2016-08-17

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New package BuyseTest with initial version 1.0
Package: BuyseTest
Type: Package
Title: Generalized Pairwise Comparisons
Version: 1.0
Date: 2016-08-15
Author: Brice Ozenne[aut, cre], Julien Peron[aut]
Maintainer: brice ozenne <brice.ozenne@orange.fr>
Description: Implementation of the Generalized Pairwise Comparisons. This test enables to compare two groups of observations in randomized trials(e.g treated vs. control patients) on several prioritized outcomes. Pairwise comparisons require consideration of all possible pairs of individuals, one taken from the treatment group and the other taken from the control group. The outcomes of the two individuals forming a pair are compared. Thresholds of minimal clinically significant differences can be defined. It is possible to analyse simultaneously several outcomes by prioritizing the variables that capture them. The highest priority is assigned to the variable considered the most clinically relevant. A natural way of handling uninformative or neutral pairs is to consider the outcomes in descending order of priority: whenever a pair is uninformative or neutral for an outcome of higher priority, the outcomes of lower priority are examined In the case of time-to-event endpoint, four methods to handle censored observations are available in this package (Gehan, Peto, Efron, and Peron).
License: GPL-3
Depends: R (>= 2.10), survival, Rcpp, data.table, snowfall
Imports: methods, lava, stats, stats4, tcltk, utils
Suggests: testthat
LinkingTo: Rcpp, RcppArmadillo
Collate: 'BuyseTest-package.R' 'FCT_BuyseTest.R' 'FCT_Valid.R' 'FCT_simul.R' 'FCT_support.R' 'FCTi-computation.R' 'FCTi-initilization.R' 'FCTi-print.R' 'OBJECT_BuyseTest.R' 'METHOD_get.R' 'METHOD_summary.R' 'METHOD_print.R' 'RcppExports.R'
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-17 05:19:17 UTC; brice
Repository: CRAN
Date/Publication: 2016-08-17 10:40:20

More information about BuyseTest at CRAN
Permanent link

Package fastcmh (with last version 0.1.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-08-16 0.1.9

Permanent link
Package gmapsdistance updated to version 3.1 with previous version 3.0 dated 2016-08-09

Title: Distance and Travel Time Between Two Points from Google Maps
Description: Get distance and travel time between two points from Google Maps. Four possible modes of transportation (bicycling, walking, driving and public transportation).
Author: Rodrigo Azuero Melo & David Zarruk
Maintainer: Rodrigo Azuero Melo <rodazuero@gmail.com>

Diff between gmapsdistance versions 3.0 dated 2016-08-09 and 3.1 dated 2016-08-17

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More information about gmapsdistance at CRAN
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