Title: Bootstrap Methods for 'ToxCast' High Throughput Screening Data
Description: Provides methods to use bootstrapping to quantify uncertainty
in fitting 'ToxCast' concentration response data. Data is stored in memory,
written to file, or stored in 'MySQL' or 'MongoDB' databases.
Author: Eric D. Watt [aut, cre]
Maintainer: Eric D. Watt <eric@ericdwatt.com>
Diff between toxboot versions 0.1.0 dated 2016-08-12 and 0.1.1 dated 2016-08-23
DESCRIPTION | 14 ++--- MD5 | 26 ++++----- NAMESPACE | 20 ------- NEWS.md | 4 + R/onAttach.R | 20 ++++--- R/toxboot.R | 36 ++++++++----- R/toxbootMongoFuncs.R | 98 ++++++++++++++++++++---------------- R/toxbootMonitorFuncs.R | 17 ++++-- R/toxbootMySQLFuncs.R | 22 +++++--- R/toxbootMySQLSetup.R | 125 ++++++++++++++++++++++++----------------------- R/toxbootmc.R | 19 ++++++- README.md | 4 - inst/doc/toxboot.html | 18 +++--- man/toxbootMongoCount.Rd | 2 14 files changed, 234 insertions(+), 191 deletions(-)
Title: Bayesian Mixing Models in R
Description: Creates and runs Bayesian mixing models to analyze
biotracer data (i.e. stable isotopes, fatty acids), which estimate the
proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR'
is not one model, but a framework that allows a user to create a mixing model
based on their data structure and research questions, via options for fixed/
random effects, source data types, priors, and error terms. 'MixSIAR' incorporates
several years of advances since 'MixSIR' and 'SIAR', and includes both GUI
(graphical user interface) and script versions.
Author: Brian Stock [cre, aut],
Brice Semmens [aut],
Eric Ward [ctb],
Andrew Parnell [ctb],
Andrew Jackson [ctb],
Donald Phillips [ctb],
Jon Moore [ctb],
Stuart Bearhop [ctb],
Richard Inger [ctb]
Maintainer: Brian Stock <b1stock@ucsd.edu>
Diff between MixSIAR versions 3.1.6 dated 2016-06-25 and 3.1.7 dated 2016-08-23
DESCRIPTION | 11 +- MD5 | 32 +++--- NEWS.md | 13 ++ R/load_source_data.R | 7 - R/run_model.R | 14 ++ R/write_JAGS_model.R | 2 README.md | 204 ++++++++++++++++++++++++++++++++++--------- build/vignette.rds |binary inst/doc/cladocera_ex.R | 4 inst/doc/cladocera_ex.Rmd | 4 inst/doc/cladocera_ex.html | 6 - inst/doc/geese_ex.html | 82 ++++++++--------- inst/doc/isopod_ex.html | 2 inst/doc/killerwhale_ex.html | 2 inst/doc/lake_ex.html | 82 ++++++++--------- inst/doc/wolves_ex.html | 82 ++++++++--------- vignettes/cladocera_ex.Rmd | 4 17 files changed, 350 insertions(+), 201 deletions(-)
Title: Import Articles from 'Europresse' Using the 'tm' Text Mining
Framework
Description: Provides a 'tm' Source to create corpora from
articles exported from the 'Europresse' content provider as
HTML files. It is able to read both text content and meta-data
information (including source, date, title, author and pages).
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between tm.plugin.europresse versions 1.3 dated 2015-07-28 and 1.4 dated 2016-08-23
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- NEWS | 4 ++++ R/readEuropresseHTML.R | 8 ++++---- man/EuropresseSource.Rd | 4 ++-- 6 files changed, 20 insertions(+), 16 deletions(-)
More information about tm.plugin.europresse at CRAN
Permanent link
Title: Spatial and Space-Time Point Pattern Analysis
Description: The Splancs package was written as an enhancement to S-Plus for display and analysis of spatial point pattern data; it has been ported to R and is in "maintenance mode".
Author: Roger Bivand [cre],
Barry Rowlingson [aut],
Peter Diggle [aut],
Giovanni Petris [ctb],
Stephen Eglen [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between splancs versions 2.01-38 dated 2015-09-28 and 2.01-39 dated 2016-08-23
ChangeLog | 609 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 MD5 | 54 ++-- inst/ChangeLog | 609 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ src/areapl.f | 2 src/bounds.h | 2 src/cncvwt.f | 4 src/dokhat.f | 2 src/inpip.f | 4 src/ipippa.f | 4 src/iplace.f | 2 src/k12hat.f | 2 src/kernel3d.f | 2 src/khvc.f | 2 src/khvmat.f | 2 src/krnnrm.f | 2 src/krnqne.f | 2 src/krnqrt.f | 8 src/nndist.f | 10 src/plarea.f | 2 src/sekhat.f | 2 src/sort.f | 2 src/sort2.f | 2 src/stkhat.f | 4 src/stsecal.f | 2 src/tribble.f | 16 - src/twodimmse.f | 8 src/weight.f | 2 28 files changed, 1294 insertions(+), 76 deletions(-)
Title: Genomic Region Processing using Tools Such as BEDtools, BEDOPS
and Tabix
Description: Genomic regions processing using open-source command line tools such as BEDtools, BEDOPS and Tabix.
These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging.
bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
Author: Daryl Waggott, Syed Haider, Emilie Lalonde, Clement Fung, Paul C. Boutros
Maintainer: Paul Boutros <Paul.Boutros@oicr.on.ca>
Diff between bedr versions 1.0.2 dated 2015-09-21 and 1.0.3 dated 2016-08-23
bedr-1.0.2/bedr/R/snm.R |only bedr-1.0.2/bedr/man/snm.Rd |only bedr-1.0.3/bedr/DESCRIPTION | 16 + bedr-1.0.3/bedr/MD5 | 40 ++-- bedr-1.0.3/bedr/NAMESPACE | 2 bedr-1.0.3/bedr/NEWS | 7 bedr-1.0.3/bedr/R/bed2index.R | 8 bedr-1.0.3/bedr/R/bedr.snm.region.R |only bedr-1.0.3/bedr/R/download.datasets.R | 2 bedr-1.0.3/bedr/R/get.example.regions.R | 7 bedr-1.0.3/bedr/R/permute.region.R | 16 - bedr-1.0.3/bedr/R/query.ucsc.R | 12 - bedr-1.0.3/bedr/R/read.vcf.R | 92 ++++++----- bedr-1.0.3/bedr/R/vcf2bed.R | 28 +++ bedr-1.0.3/bedr/build/vignette.rds |binary bedr-1.0.3/bedr/inst/doc/Using-bedr.Rmd | 5 bedr-1.0.3/bedr/inst/doc/Using-bedr.html | 204 +++++++++++++------------ bedr-1.0.3/bedr/inst/extdata/rmsk.sql |only bedr-1.0.3/bedr/inst/genomes/human.hg38.genome |only bedr-1.0.3/bedr/man/bedR-package.Rd | 4 bedr-1.0.3/bedr/man/bedr.snm.region.Rd |only bedr-1.0.3/bedr/man/test.region.similarity.Rd | 4 bedr-1.0.3/bedr/man/vcf2bed.Rd | 3 bedr-1.0.3/bedr/vignettes/Using-bedr.Rmd | 5 24 files changed, 271 insertions(+), 184 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>, Marco Smolla
<marco.smolla@postgrad.manchester.ac.uk>
Maintainer: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>
Diff between move versions 2.0.0 dated 2016-06-13 and 2.1.0 dated 2016-08-23
ChangeLog | 13 ++++++++---- DESCRIPTION | 11 +++++----- MD5 | 38 +++++++++++++++++++++++-------------- NAMESPACE | 4 +++ R/UDStack.R | 5 ++++ R/brownianbridgedyn.R | 1 R/brownianmotionvariancedyn.R | 1 R/burst.R | 15 ++++++++++---- R/burstId.R | 13 ++++++++++++ R/emd.R |only inst/doc/browseMovebank.pdf |binary inst/doc/move.pdf |binary man/UDStack.Rd | 3 +- man/burst.Rd | 7 +++--- man/burstId.Rd | 8 ++++++- man/emd.Rd |only src/EMD_DEFS.h |only src/emd.cpp |only src/emd_hat.h |only src/emd_hat_impl.h |only src/emd_hat_signatures_interface.h |only src/flow_utils.h |only src/min_cost_flow.h |only tests/testthat/test.burst.R | 5 ++++ tests/testthat/test.emd.R |only 25 files changed, 92 insertions(+), 32 deletions(-)
Title: Latent Markov Models with and without Covariates
Description: Fit certain versions of the Latent Markov model for longitudinal categorical data.
Author: Francesco Bartolucci, Silvia Pandolfi - University of Perugia (IT)
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>
Diff between LMest versions 2.2 dated 2016-02-25 and 2.3 dated 2016-08-23
DESCRIPTION | 8 ++-- MD5 | 14 ++++---- R/draw_lm_cov_latent.R | 10 ++++- R/est_lm_cov_latent.R | 6 ++- R/est_lm_cov_manifest.R | 76 +++++++++++++++++++++++++++------------------ R/lk_obs_manifest.R | 22 +++++++++---- man/LMest-package.Rd | 2 - man/est_lm_cov_manifest.Rd | 6 +-- 8 files changed, 90 insertions(+), 54 deletions(-)
Title: Generate, Visualise, and Compare Fast and Frugal Decision Trees
Description: Contains several functions that allow you
to create, visualise, and test Fast and Frugal Trees (FFTrees). FFTrees are very simple decision trees for
classifying cases (i.e.; breast cancer patients) into one of two classes (e.g.;
no cancer vs. true cancer) based on a small number of cues (e.g.; test results). FFTrees can be preferable to more complex algorithms (such as
logistic regression) because they are easy to communicate and implement, and are
robust against noisy data.
Author: Nathaniel Phillips [aut, cre]
Maintainer: Nathaniel Phillips <Nathaniel.D.Phillips.is@gmail.com>
Diff between FFTrees versions 1.1.3 dated 2016-08-16 and 1.1.4 dated 2016-08-23
FFTrees-1.1.3/FFTrees/R/fft_function.R |only FFTrees-1.1.3/FFTrees/R/growffts_function.R |only FFTrees-1.1.3/FFTrees/R/plotfft_function.R |only FFTrees-1.1.3/FFTrees/R/predictfft_function.R |only FFTrees-1.1.3/FFTrees/R/printfft_function.R |only FFTrees-1.1.3/FFTrees/R/summaryfft_function.R |only FFTrees-1.1.3/FFTrees/inst/doc/fft_examples.R |only FFTrees-1.1.3/FFTrees/inst/doc/fft_examples.Rmd |only FFTrees-1.1.3/FFTrees/inst/doc/fft_examples.html |only FFTrees-1.1.3/FFTrees/inst/doc/fft_function.R |only FFTrees-1.1.3/FFTrees/inst/doc/fft_function.Rmd |only FFTrees-1.1.3/FFTrees/inst/doc/fft_function.html |only FFTrees-1.1.3/FFTrees/inst/doc/fft_overview.R |only FFTrees-1.1.3/FFTrees/inst/doc/fft_overview.Rmd |only FFTrees-1.1.3/FFTrees/inst/doc/fft_overview.html |only FFTrees-1.1.3/FFTrees/inst/doc/fft_plot.R |only FFTrees-1.1.3/FFTrees/inst/doc/fft_plot.Rmd |only FFTrees-1.1.3/FFTrees/inst/doc/fft_plot.html |only FFTrees-1.1.3/FFTrees/man/fft.Rd |only FFTrees-1.1.3/FFTrees/man/grow.ffts.Rd |only FFTrees-1.1.3/FFTrees/man/plot.fft.Rd |only FFTrees-1.1.3/FFTrees/man/predict.fft.Rd |only FFTrees-1.1.3/FFTrees/man/print.fft.Rd |only FFTrees-1.1.3/FFTrees/man/summary.fft.Rd |only FFTrees-1.1.3/FFTrees/vignettes/fft_examples.Rmd |only FFTrees-1.1.3/FFTrees/vignettes/fft_function.Rmd |only FFTrees-1.1.3/FFTrees/vignettes/fft_function.md |only FFTrees-1.1.3/FFTrees/vignettes/fft_overview.Rmd |only FFTrees-1.1.3/FFTrees/vignettes/fft_overview.md |only FFTrees-1.1.3/FFTrees/vignettes/fft_plot.Rmd |only FFTrees-1.1.3/FFTrees/vignettes/fft_plot.md |only FFTrees-1.1.4/FFTrees/DESCRIPTION | 14 +-- FFTrees-1.1.4/FFTrees/MD5 | 87 +++++++++---------- FFTrees-1.1.4/FFTrees/NAMESPACE | 11 +- FFTrees-1.1.4/FFTrees/R/FFTrees.R |only FFTrees-1.1.4/FFTrees/R/FFTreesguide_function.R | 2 FFTrees-1.1.4/FFTrees/R/auc_function.R | 2 FFTrees-1.1.4/FFTrees/R/cartpred_function.R | 2 FFTrees-1.1.4/FFTrees/R/classtable_function.R | 2 FFTrees-1.1.4/FFTrees/R/depreciated.R |only FFTrees-1.1.4/FFTrees/R/growFFTrees_function.R |only FFTrees-1.1.4/FFTrees/R/plotFFTrees_function.R |only FFTrees-1.1.4/FFTrees/R/predictFFTrees_function.R |only FFTrees-1.1.4/FFTrees/R/printFFTrees_function.R |only FFTrees-1.1.4/FFTrees/R/showcues_function.R | 2 FFTrees-1.1.4/FFTrees/R/summaryFFTrees_function.R |only FFTrees-1.1.4/FFTrees/README.md | 18 +++ FFTrees-1.1.4/FFTrees/build/vignette.rds |binary FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_examples.R |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_examples.Rmd |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_examples.html |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_function.R |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_function.Rmd |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_function.html |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_overview.R |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_overview.Rmd |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_overview.html |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_plot.R |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_plot.Rmd |only FFTrees-1.1.4/FFTrees/inst/doc/FFTrees_plot.html |only FFTrees-1.1.4/FFTrees/man/FFTrees.Rd |only FFTrees-1.1.4/FFTrees/man/auc.Rd | 4 FFTrees-1.1.4/FFTrees/man/cart.pred.Rd | 4 FFTrees-1.1.4/FFTrees/man/classtable.Rd | 4 FFTrees-1.1.4/FFTrees/man/deprecated.Rd |only FFTrees-1.1.4/FFTrees/man/grow.FFTrees.Rd |only FFTrees-1.1.4/FFTrees/man/plot.FFTrees.Rd |only FFTrees-1.1.4/FFTrees/man/predict.FFTrees.Rd |only FFTrees-1.1.4/FFTrees/man/print.FFTrees.Rd |only FFTrees-1.1.4/FFTrees/man/showcues.Rd | 2 FFTrees-1.1.4/FFTrees/man/summary.FFTrees.Rd |only FFTrees-1.1.4/FFTrees/vignettes/FFTrees_examples.Rmd |only FFTrees-1.1.4/FFTrees/vignettes/FFTrees_function.Rmd |only FFTrees-1.1.4/FFTrees/vignettes/FFTrees_overview.Rmd |only FFTrees-1.1.4/FFTrees/vignettes/FFTrees_plot.Rmd |only 75 files changed, 84 insertions(+), 70 deletions(-)
Title: Gaussian Approximation of Bayesian Binary Regression Models
Description: The main functions compute the expectation propagation approximation of a Bayesian probit/logit models with Gaussian prior. More information can be found in Chopin and Ridgway (2015). More models and priors should follow.
Author: James Ridgway
Maintainer: James Ridgway <james.ridgway@ensae.fr>
Diff between EPGLM versions 1.1.1 dated 2016-01-09 and 1.1.2 dated 2016-08-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/EP.R | 6 +++--- man/EPGLM-package.Rd | 4 ++-- src/function.cpp | 4 ++-- 5 files changed, 15 insertions(+), 15 deletions(-)
Title: Distributed-Lag Structural Equation Modelling with Second-Order
Polynomial Lag Shapes
Description: Estimation and path analysis functionalities for structural equation models with second-order polynomial lag shapes.
Author: Alessandro Magrini
Maintainer: Alessandro Magrini <magrini@disia.unifi.it>
Diff between dlsem versions 1.2.1 dated 2016-07-05 and 1.3.0 dated 2016-08-23
dlsem-1.2.1/dlsem/man/dlaglm.Rd |only dlsem-1.3.0/dlsem/DESCRIPTION | 11 dlsem-1.3.0/dlsem/MD5 | 31 - dlsem-1.3.0/dlsem/NAMESPACE | 4 dlsem-1.3.0/dlsem/R/dlsem.r | 414 +++++++++++++------------ dlsem-1.3.0/dlsem/build/vignette.rds |binary dlsem-1.3.0/dlsem/inst/doc/dlsem_tutorial.R | 24 - dlsem-1.3.0/dlsem/inst/doc/dlsem_tutorial.Rnw | 210 +++++++----- dlsem-1.3.0/dlsem/inst/doc/dlsem_tutorial.pdf |binary dlsem-1.3.0/dlsem/man/EM.imputation.Rd | 4 dlsem-1.3.0/dlsem/man/applyDiff.Rd | 6 dlsem-1.3.0/dlsem/man/dlsem-package.Rd | 6 dlsem-1.3.0/dlsem/man/dlsem.Rd | 35 +- dlsem-1.3.0/dlsem/man/lagPlot.Rd | 12 dlsem-1.3.0/dlsem/man/pathAnal.Rd | 4 dlsem-1.3.0/dlsem/man/unirootTest.Rd | 6 dlsem-1.3.0/dlsem/vignettes/dlsem_tutorial.Rnw | 210 +++++++----- 17 files changed, 544 insertions(+), 433 deletions(-)
Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate,
U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a shiny-based
user-interface. Outputs publication quality figures using ggplot2, and
tables of statistics currently in use in the detrital zircon geochronology
community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>
Diff between detzrcr versions 0.1.0 dated 2016-06-29 and 0.1.1 dated 2016-08-23
DESCRIPTION | 7 +++--- MD5 | 16 +++++++-------- NAMESPACE | 13 ++++++++++++ NEWS.md | 4 ++- R/calculations.R | 1 R/constants.R | 17 ++++++++-------- R/plotting.R | 8 +++---- README.md | 15 +++++++++++--- inst/shiny-apps/detzrcr_app/app.R | 40 ++++++++++++++++++++++++++++++-------- 9 files changed, 85 insertions(+), 36 deletions(-)
Title: Bayesian Meta-Analysis of Diagnostic Test Data
Description: Functions for Bayesian meta-analysis of diagnostic test data which
are based on a scale mixtures bivariate random-effects model.
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>
Diff between bamdit versions 2.0.1 dated 2015-08-11 and 3.0.0 dated 2016-08-23
bamdit-2.0.1/bamdit/R/plotcont.R |only bamdit-2.0.1/bamdit/man/plotcont.Rd |only bamdit-3.0.0/bamdit/ChangeLog | 25 bamdit-3.0.0/bamdit/DESCRIPTION | 18 bamdit-3.0.0/bamdit/MD5 | 56 bamdit-3.0.0/bamdit/NAMESPACE | 10 bamdit-3.0.0/bamdit/R/bamdit-package.R | 512 +++---- bamdit-3.0.0/bamdit/R/bsroc.R | 74 - bamdit-3.0.0/bamdit/R/metadiag.R | 1944 ++++++++++++++++++++-------- bamdit-3.0.0/bamdit/R/plot.metadiag.R |only bamdit-3.0.0/bamdit/R/plotcompare.R | 93 - bamdit-3.0.0/bamdit/R/plotdata.R | 181 +- bamdit-3.0.0/bamdit/R/plotsesp.R | 8 bamdit-3.0.0/bamdit/R/plotw.R | 47 bamdit-3.0.0/bamdit/R/print.metadiag.R |only bamdit-3.0.0/bamdit/R/summary.metadiag.R |only bamdit-3.0.0/bamdit/man/bamdit-package.Rd | 90 - bamdit-3.0.0/bamdit/man/bsroc.Rd | 141 +- bamdit-3.0.0/bamdit/man/ct.Rd | 89 - bamdit-3.0.0/bamdit/man/ep.Rd | 56 bamdit-3.0.0/bamdit/man/glas.Rd | 68 bamdit-3.0.0/bamdit/man/gould.Rd | 67 bamdit-3.0.0/bamdit/man/metadiag.Rd | 411 ++++- bamdit-3.0.0/bamdit/man/mri.Rd | 63 bamdit-3.0.0/bamdit/man/plot.metadiag.Rd |only bamdit-3.0.0/bamdit/man/plotcompare.Rd | 144 +- bamdit-3.0.0/bamdit/man/plotdata.Rd | 126 + bamdit-3.0.0/bamdit/man/plotsesp.Rd | 70 - bamdit-3.0.0/bamdit/man/plotw.Rd | 83 - bamdit-3.0.0/bamdit/man/print.metadiag.Rd |only bamdit-3.0.0/bamdit/man/safdar05.Rd | 67 bamdit-3.0.0/bamdit/man/scheidler.Rd | 71 - bamdit-3.0.0/bamdit/man/summary.metadiag.Rd |only 33 files changed, 2966 insertions(+), 1548 deletions(-)
Title: Reliability Coefficients
Description: Derives point estimates with confidence intervals for Bennett et als S, Cohen's kappa and weighted kappa, Gwet's AC1 and AC2, Krippendorff's alpha, and Scott's pi.
Author: Riccardo Lo Martire
Maintainer: Riccardo Lo Martire <lomartire@kth.se>
Diff between rel versions 1.0.0 dated 2016-07-31 and 1.1.0 dated 2016-08-23
rel-1.0.0/rel/R/bags.R |only rel-1.0.0/rel/R/ckap.R |only rel-1.0.0/rel/R/gac.R |only rel-1.0.0/rel/R/kra.R |only rel-1.0.0/rel/R/spi.R |only rel-1.0.0/rel/man/bags.Rd |only rel-1.0.0/rel/man/ckap.Rd |only rel-1.0.0/rel/man/gac.Rd |only rel-1.0.0/rel/man/kra.Rd |only rel-1.0.0/rel/man/spi.Rd |only rel-1.1.0/rel/DESCRIPTION | 7 +++---- rel-1.1.0/rel/MD5 | 27 ++++++++++++++------------- rel-1.1.0/rel/NAMESPACE | 10 +++++----- rel-1.1.0/rel/NEWS |only rel-1.1.0/rel/R/bS.R |only rel-1.1.0/rel/R/cKap.R |only rel-1.1.0/rel/R/gAC.R |only rel-1.1.0/rel/R/krA.R |only rel-1.1.0/rel/R/sPi.R |only rel-1.1.0/rel/man/bS.Rd |only rel-1.1.0/rel/man/cKap.Rd |only rel-1.1.0/rel/man/gAC.Rd |only rel-1.1.0/rel/man/krA.Rd |only rel-1.1.0/rel/man/rel-package.Rd | 2 +- rel-1.1.0/rel/man/sPi.Rd |only 25 files changed, 23 insertions(+), 23 deletions(-)
Title: Generalized Autoregressive Score Models
Description: Simulate, Estimate and Forecast using univariate and multivariate GAS models.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Diff between GAS versions 0.1.1 dated 2016-08-17 and 0.1.2 dated 2016-08-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/partial.rdb |binary inst/doc/GAS_vignette_0.1.1.pdf |binary man/GAS-package.Rd | 6 +++--- src/Filters.cpp | 4 ++-- 6 files changed, 13 insertions(+), 13 deletions(-)
Title: Computed ABC Analysis
Description: For a given data set, the package provides a novel method of computing precise limits to acquire subsets which are easily interpreted. Closely related to the Lorenz curve, the ABC curve visualizes the data by graphically representing the cumulative distribution function. Based on an ABC analysis the algorithm calculates, with the help of the ABC curve, the optimal limits by exploiting the mathematical properties pertaining to distribution of analyzed items. The data containing positive values is divided into three disjoint subsets A, B and C, with subset A comprising very profitable values, i.e. largest data values ("the important few"), subset B comprising values where the yield equals to the effort required to obtain it, and the subset C comprising of non-profitable values, i.e., the smallest data sets ("the trivial many"). Package is based on "Computed ABC Analysis for rational Selection of most informative Variables in multivariate Data", PLoS One. Ultsch. A., Lotsch J. (2015) <DOI:10.1371/journal.pone.0129767>.
Author: Michael Thrun, Jorn Lotsch, Alfred Ultsch
Maintainer: Michael Thrun <mthrun@mathematik.uni-marburg.de>
Diff between ABCanalysis versions 1.1.1 dated 2016-06-15 and 1.1.2 dated 2016-08-23
DESCRIPTION | 13 +++++++------ MD5 | 12 ++++++------ NAMESPACE | 1 - R/ABCanalysis.R | 21 +++++++++++++++++++-- R/ABCplot.R | 2 +- man/ABCanalysis-package.Rd | 14 +++----------- man/ABCanalysis.Rd | 10 +++++----- 7 files changed, 41 insertions(+), 32 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-23 0.3
2012-08-09 0.2
2012-06-25 0.1
Title: Modelling and Analysis of Leaf Gas Exchange Data
Description: Coupled leaf gas exchange model, A-Ci curve simulation and
fitting, Ball-Berry stomatal conductance models,
leaf energy balance using Penman-Monteith, Cowan-Farquhar
optimization, humidity unit conversions.
Author: Remko Duursma [aut, cre]
Maintainer: Remko Duursma <remkoduursma@gmail.com>
Diff between plantecophys versions 1.1-3 dated 2016-07-05 and 1.1-8 dated 2016-08-23
DESCRIPTION | 6 ++-- MD5 | 16 ++++++------ R/fitaci.R | 67 +++++++++++++++++++++++++++++++++------------------- R/fitaci_methods.R | 10 +++++++ R/fitacis.R | 24 +++++++++++++----- build/partial.rdb |binary data/manyacidat.rda |binary man/fitaci.Rd | 5 +++ man/fitacis.Rd | 16 ++++++++++-- 9 files changed, 100 insertions(+), 44 deletions(-)
Title: Fitting Finite Mixture of Scale Mixture of Skew-Normal
Distributions
Description: Functions to fit finite mixture of scale mixture of
skew-normal (FM-SMSN) distributions.
Author: Marcos Prates [aut, cre, trl], Victor Lachos [aut], Celso Cabral [aut]
Maintainer: Marcos Prates <marcosop@est.ufmg.br>
Diff between mixsmsn versions 1.1-1 dated 2015-11-16 and 1.1-2 dated 2016-08-23
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/utils.multi.R | 33 +++++++++++++++++---------------- 4 files changed, 27 insertions(+), 22 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.8 dated 2016-07-18 and 0.8.9 dated 2016-08-23
DESCRIPTION | 8 - MD5 | 25 ++- NAMESPACE | 1 NEWS.md | 7 + R/FSAUtils.R | 90 +++++++++++++ R/Summarize.R | 212 +++++++++----------------------- R/ageComparisons.R | 2 R/growthModels.R | 22 +-- man/Summarize.Rd | 93 ++++---------- man/diags.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test_FSAUtils.R | 112 +++++++++++++++++ tests/testthat/test_Summarize.R | 251 ++++++++++++--------------------------- tests/testthat/test_growthFuns.R | 4 14 files changed, 413 insertions(+), 414 deletions(-)