Sat, 27 Aug 2016

New package Rtextrankr with initial version 1.0.0
Package: Rtextrankr
Type: Package
Title: TextRank for Korean
Version: 1.0.0
Date: 2016-8-25
Author: Junghoon Seo
Maintainer: Junghoon Seo <s3213403@gmail.com>
Description: Reorder sentences for Korean text using TextRank algorithm.
License: GPL-3
URL: https://github.com/mikigom/Rtextrankr
Depends: R (>= 3.0.2), KoNLP (>= 0.76.9)
Imports: igraph (>= 1.0.1), sets (>= 1.0-16), stringi (>= 1.1.0)
Collate: 'Rtextrankr.R'
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-27 20:22:11 UTC; mikigom
Repository: CRAN
Date/Publication: 2016-08-27 23:06:16

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Package Lahman updated to version 5.0-0 with previous version 4.0-1 dated 2015-09-15

Title: Sean 'Lahman' Baseball Database
Description: Provides the tables from the 'Sean Lahman Baseball Database' as a set of R data.frames. It uses the data on pitching, hitting and fielding performance and other tables from 1871 through 2015, as recorded in the 2016 version of the database.
Author: Michael Friendly [aut], Dennis Murphy [ctb], Martin Monkman [ctb], Chris Dalzell [cre, ctb]
Maintainer: Chris Dalzell <cdalzell@gmail.com>

Diff between Lahman versions 4.0-1 dated 2015-09-15 and 5.0-0 dated 2016-08-27

 Lahman-4.0-1/Lahman/README.md                            |only
 Lahman-5.0-0/Lahman/DESCRIPTION                          |   28 -
 Lahman-5.0-0/Lahman/MD5                                  |  137 +++---
 Lahman-5.0-0/Lahman/NAMESPACE                            |   11 
 Lahman-5.0-0/Lahman/NEWS                                 |   17 
 Lahman-5.0-0/Lahman/R/Label.R                            |    2 
 Lahman-5.0-0/Lahman/R/battingStats.R                     |    4 
 Lahman-5.0-0/Lahman/R/playerInfo.R                       |    3 
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 Lahman-5.0-0/Lahman/man/Label.Rd                         |    8 
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 71 files changed, 2806 insertions(+), 2113 deletions(-)

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Package RcmdrPlugin.NMBU updated to version 1.8.6 with previous version 1.8.5 dated 2016-01-17

Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models and providing an interface to Partial Least Squares Regression and Linear and Quadratic Discriminant analysis. Several statistical summaries are extended, predictions are offered for additional types of analyses, and extra plots, tests and mixed models are available.
Author: Kristian Hovde Liland [aut, cre], Solve SśbÝ [aut]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>

Diff between RcmdrPlugin.NMBU versions 1.8.5 dated 2016-01-17 and 1.8.6 dated 2016-08-27

 DESCRIPTION |   10 +++++-----
 MD5         |    2 +-
 2 files changed, 6 insertions(+), 6 deletions(-)

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Package optband updated to version 0.2 with previous version 0.1 dated 2016-08-27

Title: 'surv' Object Confidence Bands Optimized by Area
Description: Given a certain coverage level, obtains simultaneous confidence bands for the survival and cumulative hazard functions such that the area between is minimized. Produces an approximate solution based on local time arguments.
Author: Tom Chen & Sam Tracy
Maintainer: Sam Tracy <stracy@g.harvard.edu>

Diff between optband versions 0.1 dated 2016-08-27 and 0.2 dated 2016-08-27

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 13 files changed, 102 insertions(+), 34 deletions(-)

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New package ndjson with initial version 0.2.0
Package: ndjson
Type: Package
Title: Wicked-Fast Streaming 'JSON' ('ndjson') Reader
Version: 0.2.0
Date: 2016-08-27
Author: Bob Rudis (@hrbrmstr), Niels Lohmann (C++ json parser), Deepak Bandyopadhyay (C++ gzstream), Lutz Kettner (C++ gzstream)
Maintainer: Bob Rudis <bob@rud.is>
Description: Streaming 'JSON' ('ndjson') has one 'JSON' record per-line and many modern 'ndjson' files contain large numbers of records. These constructs may not be columnar in nature, but it's often useful to read in these files and "flatten" the structure out to work in an R data.frame-like context. Functions are provided that make it possible to read in plain 'ndjson' files or compressed ('gz') 'ndjson' files and either validate the format of the records or create "flat" data.table ('tbl_dt') structures from them.
URL: http://gitlab.com/hrbrmstr/ndjson
BugReports: https://gitlab.com/hrbrmstr/ndjson/issues
SystemRequirements: zlib, C++11
NeedsCompilation: yes
License: AGPL
Suggests: testthat
Depends: R (>= 3.2.0)
Imports: Rcpp, Rcpp11, data.table, dtplyr
LinkingTo: Rcpp, Rcpp11
RoxygenNote: 5.0.1
Packaged: 2016-08-27 18:03:03 UTC; bob
Repository: CRAN
Date/Publication: 2016-08-27 20:17:14

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Package irlba updated to version 2.1.1 with previous version 2.0.0 dated 2015-10-11

Title: Fast Truncated SVD, PCA and Symmetric Eigendecomposition for Large Dense and Sparse Matrices
Description: Fast and memory efficient methods for truncated singular and eigenvalue decompositions and principal component analysis of large sparse or dense matrices.
Author: Jim Baglama [aut, cph], Lothar Reichel [aut, cph], B. W. Lewis [aut, cre, cph]
Maintainer: B. W. Lewis <blewis@illposed.net>

Diff between irlba versions 2.0.0 dated 2015-10-11 and 2.1.1 dated 2016-08-27

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Package rfoaas updated to version 1.1.0 with previous version 1.0.0 dated 2016-08-14

Title: R Interface to 'FOAAS'
Description: R access to the 'FOAAS' (F... Off As A Service) web service is provided.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between rfoaas versions 1.0.0 dated 2016-08-14 and 1.1.0 dated 2016-08-27

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Package quickReg updated to version 1.0.0 with previous version 0.0.3 dated 2016-04-26

Title: Build Regression Models Quickly and Display the Results Using 'ggplot2'
Description: A set of functions to extract results from regression models and plot the effect size using 'ggplot2' seamlessly. While 'broom' is useful to convert statistical analysis objects into tidy data frames, 'coefplot' is adept at showing multivariate regression results. With specific outcome, this package could build regression models automatically, extract results into a data frame and provide a quicker way to summarize models' statistical findings using 'ggplot2'.
Author: Xikun Han [aut, cre]
Maintainer: Xikun Han <hanxikun2014@163.com>

Diff between quickReg versions 0.0.3 dated 2016-04-26 and 1.0.0 dated 2016-08-27

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New package oceanmap with initial version 0.0.1
Package: oceanmap
Type: Package
Title: Plotting Toolbox for 2D Oceanographic Data
Version: 0.0.1
Date: 2016-08-16
Author: Robert K. Bauer
Maintainer: Robert K. Bauer <robert.bauer@ird.fr>
Depends: R (>= 2.10), maps, mapdata, raster, extrafont
Imports: abind, fields, marmap, plotrix, methods, utils, grDevices, maptools, sp, ncdf4, stats
Description: Plotting toolbox for 2D oceanographic data (satellite data, sst, chla, ocean fronts & bathymetry). Recognized classes and formats include ncdf4, Raster, '.nc' and '.gz' files.
License: GPL (>= 3)
Packaged: 2016-08-27 06:49:51 UTC; robert
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-08-27 15:48:48
SystemRequirements: ImageMagick

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Package gplm updated to version 0.7-3 with previous version 0.7-2 dated 2014-05-07

Title: Generalized Partial Linear Models (GPLM)
Description: Provides functions for estimating a generalized partial linear model, a semiparametric variant of the generalized linear model (GLM) which replaces the linear predictor by the sum of a linear and a nonparametric function.
Author: Marlene Mueller
Maintainer: Marlene Mueller <marlene.mueller@gmx.de>

Diff between gplm versions 0.7-2 dated 2014-05-07 and 0.7-3 dated 2016-08-27

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Package propr updated to version 2.0.0 with previous version 1.1.0 dated 2016-07-06

Title: Calculating Proportionality Between Vectors of Compositional Data
Description: The bioinformatic evaluation of gene co-expression often begins with correlation-based analyses. However, this approach lacks statistical validity when applied to relative data, including those biological count data produced by microarray assays or high-throughput RNA-sequencing. As an alternative, Lovell et al propose a proportionality metric, phi, derived from compositional data analysis, a branch of math dealing specifically with relative data. In a subsequent publication, Erb and Nicodemus expounded these efforts by elaborating on another proportionality metric, rho. This package introduces a programmatic framework for the calculation of feature dependence through proportionality, as discussed in the cited publications.
Author: Thomas Quinn [aut, cre], David Lovell [aut]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>

Diff between propr versions 1.1.0 dated 2016-07-06 and 2.0.0 dated 2016-08-27

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Package heatmaply updated to version 0.5.0 with previous version 0.3.2 dated 2016-05-26

Title: Interactive Heat Maps Using 'plotly'
Description: Create interactive heatmaps that are usable from the R console, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a cell to show details or drag a rectangle to zoom. A heatmap is a popular graphical method for visualizing high-dimensional data, in which a table of numbers are encoded as a grid of colored cells. The rows and columns of the matrix are ordered to highlight patterns and are often accompanied by dendrograms. Heatmaps are used in many fields for visualizing observations, correlations, missing values patterns, and more. Interactive heatmaps allow the inspection of specific value by hovering the mouse over a cell, as well as zooming into a region of the heatmap by dragging a rectangle around the relevant area. This work is based on the 'ggplot2' and 'plotly.js' engine. It produces similar heatmaps as 'd3heatmap', with the advantage of speed ('plotly.js' is able to handle larger size matrix), and the ability to zoom from the dendrogram panes.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com)
Maintainer: Tal Galili <tal.galili@gmail.com>

Diff between heatmaply versions 0.3.2 dated 2016-05-26 and 0.5.0 dated 2016-08-27

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New package optband with initial version 0.1
Package: optband
Type: Package
Title: 'surv' Object Confidence Bands Optimized by Area
Version: 0.1
Date: 2016-08-24
Author: Tom Chen & Sam Tracy
Maintainer: Sam Tracy <stracy@g.harvard.edu>
Description: Given a certain coverage level, obtains simultaneous confidence bands for the survival and cumulative hazard functions such that the area between is minimized. Produces an approximate solution based on local time arguments.
Depends: R (>= 3.1.0)
Imports: utils, LambertW
License: GPL-2 | GPL-3
LazyData: TRUE
URL: https://github.com/seasamgo/optband
BugReports: http://github.com/seasamgo/optband/issues
RoxygenNote: 5.0.1
Suggests: stats, survival, km.ci, knitr, rmarkdown
VignetteBuilder: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2016-08-27 09:32:32 UTC; Rx
Repository: CRAN
Date/Publication: 2016-08-27 14:19:51

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Package dendextend updated to version 1.3.0 with previous version 1.2.0 dated 2016-06-22

Title: Extending R's Dendrogram Functionality
Description: Offers a set of functions for extending dendrogram objects in R, letting you visualize and compare trees of hierarchical clusterings. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different dendrograms to one another.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>

Diff between dendextend versions 1.2.0 dated 2016-06-22 and 1.3.0 dated 2016-08-27

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New package edfun with initial version 0.2.0
Package: edfun
Type: Package
Title: Creating Empirical Distribution Functions
Version: 0.2.0
Date: 2016-08-27
Authors@R: c(person("Tal", "Galili", role = c("aut", "cre", "cph"), email = "tal.galili@gmail.com", comment = "https://www.r-statistics.com"))
Depends: R (>= 3.0.0)
Imports: stats
Suggests: knitr, rmarkdown
Description: Easily creating empirical distribution functions from data: 'dfun', 'pfun', 'qfun' and 'rfun'.
VignetteBuilder: knitr
License: GPL-2 | GPL-3
URL: https://cran.r-project.org/package=edfun, https://github.com/talgalili/edfun/, https://www.r-statistics.com/tag/edfun/
BugReports: https://github.com/talgalili/edfun/issues
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-27 10:36:51 UTC; junior
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com)
Maintainer: Tal Galili <tal.galili@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-27 14:24:35

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New package sFFLHD with initial version 0.1.0
Package: sFFLHD
Type: Package
Title: Sequential Full Factorial-Based Latin Hypercube Design
Version: 0.1.0
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Description: Gives design points from a sequential full factorial-based Latin hypercube design, as described in Duan, Ankenman, Sanchez, and Sanchez (2015, Technometrics, <doi:10.1080/00401706.2015.1108233>).
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: DoE.base, methods, stats, conf.design
NeedsCompilation: no
Packaged: 2016-08-26 23:30:44 UTC; collin
Repository: CRAN
Date/Publication: 2016-08-27 07:52:49

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Package matchingMarkets updated to version 0.3-2 with previous version 0.3-1 dated 2016-08-21

Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for the sample selection bias from observed outcomes in matching markets. This includes one-sided matching of agents into groups as well as two-sided matching of students to schools. The package also contains algorithms to find stable matchings in the three most common matching problems: the stable roommates problem, the college admissions problem, and the house allocation problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.uk>

Diff between matchingMarkets versions 0.3-1 dated 2016-08-21 and 0.3-2 dated 2016-08-27

 matchingMarkets-0.3-1/matchingMarkets/R/mfx.R                              |only
 matchingMarkets-0.3-1/matchingMarkets/man/mfx.Rd                           |only
 matchingMarkets-0.3-2/matchingMarkets/DESCRIPTION                          |   14 
 matchingMarkets-0.3-2/matchingMarkets/MD5                                  |   39 
 matchingMarkets-0.3-2/matchingMarkets/NAMESPACE                            |    6 
 matchingMarkets-0.3-2/matchingMarkets/R/khb.R                              |   14 
 matchingMarkets-0.3-2/matchingMarkets/R/stabit.R                           |  279 +++--
 matchingMarkets-0.3-2/matchingMarkets/R/stabit2.R                          |  471 +++++++---
 matchingMarkets-0.3-2/matchingMarkets/README.md                            |    2 
 matchingMarkets-0.3-2/matchingMarkets/data/klein15a.RData                  |binary
 matchingMarkets-0.3-2/matchingMarkets/inst/CITATION                        |only
 matchingMarkets-0.3-2/matchingMarkets/inst/doc/matching.pdf                |binary
 matchingMarkets-0.3-2/matchingMarkets/inst/java/smi.jar                    |binary
 matchingMarkets-0.3-2/matchingMarkets/man/khb.Rd                           |   11 
 matchingMarkets-0.3-2/matchingMarkets/man/matchingMarkets-package.Rd       |    4 
 matchingMarkets-0.3-2/matchingMarkets/man/stabit.Rd                        |  103 +-
 matchingMarkets-0.3-2/matchingMarkets/man/stabit2.Rd                       |   57 -
 matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp.cpp                    |  128 --
 matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp2.cpp                   |   95 --
 matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp3.cpp                   |  203 ----
 matchingMarkets-0.3-2/matchingMarkets/vignettes/Sections/5_Application.Rnw |   15 
 matchingMarkets-0.3-2/matchingMarkets/vignettes/matching.bib               |    2 
 22 files changed, 740 insertions(+), 703 deletions(-)

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New package digitize with initial version 0.0.4
Package: digitize
Version: 0.0.4
Date: 2016-08-26
Title: Use Data from Published Plots in R
Authors@R: c( person("Timothée", "Poisot", email = "tim@poisotlab.io", role = c("aut")), person("Rene", "Sachse", email = "rene.sachse@googlemail.com", role = c("aut")), person("Jaime", "Ashander", email = "jashander@ucdavis.edu", role = c("aut", "cre")), person("Tal", "Galili", email = "tal.galili@gmail.com", role = c("aut")) )
Depends: R (>= 2.2.0)
Description: Import data from a digital image; it requires user input for calibration and to locate the data points. The end result is similar to 'DataThief' and other other programs that 'digitize' published plots or graphs.
License: GPL (>= 2)
Encoding: UTF-8
URL: https://github.com/tpoisot/digitize/
BugReports: https://github.com/tpoisot/digitize/issues
Imports: graphics, readbitmap (>= 0.1-4)
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-08-27 00:45:39 UTC; jaime
Author: Timothée Poisot [aut], Rene Sachse [aut], Jaime Ashander [aut, cre], Tal Galili [aut]
Maintainer: Jaime Ashander <jashander@ucdavis.edu>
Repository: CRAN
Date/Publication: 2016-08-27 07:52:45

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Package BAS updated to version 1.4.0 with previous version 1.3.0 dated 2016-07-16

Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and generalized linear models using stochastic or deterministic sampling without replacement from posterior distributions. Prior distributions on coefficients are from Zellner's g-prior or mixtures of g-priors corresponding to the Zellner-Siow Cauchy Priors or the mixture of g-priors from Liang et al (2008) <http://dx.doi.org/10.1198/016214507000001337> for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015) <http://arxiv.org/abs/1503.06913>. Other model selection criteria include AIC, BIC and Empirical Bayes estimates of g. Sampling probabilities may be updated based on the sampled models using Sampling w/out Replacement or an efficient MCMC algorithm samples models using the BAS tree structure as an efficient hash table. Uniform priors over all models or beta-binomial prior distributions on model size are allowed, and for large p truncated priors on the model space may be used. The user may force variables to always be included. Details behind the sampling algorithm are provided in Clyde, Ghosh and Littman (2010) <http://dx.doi.org/10.1198/jcgs.2010.09049>.
Author: Merlise Clyde [aut, cre, cph], Michael Littman [ctb], Quanli Wang [ctb], Joyee Ghosh [ctb], Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>

Diff between BAS versions 1.3.0 dated 2016-07-16 and 1.4.0 dated 2016-08-27

 BAS-1.3.0/BAS/INDEX                      |only
 BAS-1.4.0/BAS/DESCRIPTION                |   52 ++++-----
 BAS-1.4.0/BAS/MD5                        |   73 ++++++------
 BAS-1.4.0/BAS/NAMESPACE                  |    5 
 BAS-1.4.0/BAS/NEWS.md                    |only
 BAS-1.4.0/BAS/R/as.matrix.R              |    2 
 BAS-1.4.0/BAS/R/bas.R                    |   33 ++++-
 BAS-1.4.0/BAS/R/bas.gglm.R               |   90 +++++++++++----
 BAS-1.4.0/BAS/R/betapriors.R             |   35 ++++--
 BAS-1.4.0/BAS/R/coefficients.R           |   10 -
 BAS-1.4.0/BAS/R/confint.coef.R           |   62 +++++++++-
 BAS-1.4.0/BAS/R/cv.summary.R             |only
 BAS-1.4.0/BAS/R/predict.bma.R            |   46 ++++++--
 BAS-1.4.0/BAS/inst/doc/BAS-vignette.R    |    7 -
 BAS-1.4.0/BAS/inst/doc/BAS-vignette.Rmd  |   32 +++--
 BAS-1.4.0/BAS/inst/doc/BAS-vignette.html |  177 ++++++++++++++++---------------
 BAS-1.4.0/BAS/man/as.matrix.Rd           |   20 +--
 BAS-1.4.0/BAS/man/bas.Rd                 |    4 
 BAS-1.4.0/BAS/man/bas.glm.Rd             |   17 +-
 BAS-1.4.0/BAS/man/beta.prime.Rd          |    4 
 BAS-1.4.0/BAS/man/bin2int.Rd             |    5 
 BAS-1.4.0/BAS/man/cchpriors.Rd           |    4 
 BAS-1.4.0/BAS/man/coefpriors.Rd          |    2 
 BAS-1.4.0/BAS/man/cv.summary.bma.Rd      |   10 +
 BAS-1.4.0/BAS/man/hyper-g-n.Rd           |    4 
 BAS-1.4.0/BAS/man/intrinsic.Rd           |    6 -
 BAS-1.4.0/BAS/man/plot-confint.Rd        |only
 BAS-1.4.0/BAS/man/plot.coefficients.Rd   |    1 
 BAS-1.4.0/BAS/man/predict.basglm.Rd      |   35 ++++--
 BAS-1.4.0/BAS/man/predict.bma.Rd         |    8 -
 BAS-1.4.0/BAS/man/testBF-prior.Rd        |only
 BAS-1.4.0/BAS/src/Makevars               |    1 
 BAS-1.4.0/BAS/src/Makevars.win           |    1 
 BAS-1.4.0/BAS/src/bas-glm.h              |    2 
 BAS-1.4.0/BAS/src/betapriorfamily.c      |   26 +++-
 BAS-1.4.0/BAS/src/betapriorfamily.h      |    4 
 BAS-1.4.0/BAS/src/family.c               |   18 +--
 BAS-1.4.0/BAS/src/family.h               |   12 +-
 BAS-1.4.0/BAS/src/glm_lpy.c              |   10 -
 BAS-1.4.0/BAS/vignettes/BAS-vignette.Rmd |   32 +++--
 40 files changed, 531 insertions(+), 319 deletions(-)

More information about BAS at CRAN
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