Title: Analysis of Outbreaks with Sequence Data
Description: Implementation the outbreak analysis method described by
Klinkenberg et al (2016) <doi:10.1101/069195>.
Simulate outbreaks, analyse datasets by creating samples from the
posterior distribution with a Markov-Chain Monte Carlo sampler,
and summarize the output.
Author: Don Klinkenberg [aut, cre]
Maintainer: Don Klinkenberg <don@xs4all.nl>
Diff between phybreak versions 0.1.0 dated 2016-08-17 and 0.1.1 dated 2016-08-31
DESCRIPTION | 8 MD5 | 75 - NAMESPACE | 64 - NEWS.md |only R/RcppExports.R | 54 - R/burnin-phybreak.R | 102 +- R/get-current.R | 322 ++++---- R/infectorsets.R | 250 +++--- R/logLik-phybreak.R | 230 ++--- R/make-phyloclass.R | 270 +++--- R/mcmc-environment-functions.R | 412 +++++----- R/mcmc-updatehost-paths.R | 1648 ++++++++++++++++++++--------------------- R/mcmc-updateparameters.R | 250 +++--- R/phybreak-class.R | 970 ++++++++++++------------ R/phybreak.R | 16 R/phylotree.R | 202 ++--- R/plot-phybreak.R | 104 +- R/sample-minitrees.R | 194 ++-- R/sample-phybreak.R | 144 +-- R/sim-phybreak.R | 648 ++++++++-------- R/thin_phybreak.R | 82 +- R/transtree.R | 758 +++++++++--------- README.md | 27 inst/CITATION | 30 man/burnin.phybreak.Rd | 74 - man/get.phybreak.Rd | 158 +-- man/infectorsets.Rd | 104 +- man/logLik.phybreak.Rd | 114 +- man/phybreak.Rd | 248 +++--- man/phylotree.Rd | 88 +- man/plot.phybreak.Rd | 82 +- man/sample.phybreak.Rd | 80 - man/sim.phybreak.Rd | 144 +-- man/thin.phybreak.Rd | 78 - man/transtree.Rd | 154 +-- src/likseq.cpp | 66 - src/likseqenv.cpp | 28 src/mcctree.cpp | 2 src/mtcctree.cpp | 2 39 files changed, 4150 insertions(+), 4132 deletions(-)
Title: Expand Short URLs Using the 'URL-Expander' API
Description: Interface to the 'URL-Expander' API to expand vectors of short URLs
with optional error checking and URL validation. See <http://urlex.org/> for
more information about their service.
Author: Bob Rudis [aut, cre]
Maintainer: Bob Rudis <bob@rud.is>
Diff between longurl versions 0.1.1 dated 2015-08-21 and 0.2.0 dated 2016-08-31
longurl-0.1.1/longurl/man/known_services.Rd |only longurl-0.2.0/longurl/DESCRIPTION | 22 +++--- longurl-0.2.0/longurl/MD5 | 16 ++-- longurl-0.2.0/longurl/NAMESPACE | 4 - longurl-0.2.0/longurl/NEWS.md |only longurl-0.2.0/longurl/R/longurl-package.r | 10 +- longurl-0.2.0/longurl/R/longurl.r | 68 ++++---------------- longurl-0.2.0/longurl/man/expand_urls.Rd | 13 ++- longurl-0.2.0/longurl/man/longurl.Rd | 11 +-- longurl-0.2.0/longurl/tests/testthat/test-longurl.R | 1 10 files changed, 54 insertions(+), 91 deletions(-)
Title: Column-Linked and Row-Linked Matrices
Description: Matrices implemented as collections of matrix-like nodes, linked by
columns or rows.
Author: Gustavo de los Campos [aut],
Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between LinkedMatrix versions 1.1.0 dated 2016-03-07 and 1.2.0 dated 2016-08-31
LinkedMatrix-1.1.0/LinkedMatrix/inst |only LinkedMatrix-1.2.0/LinkedMatrix/DESCRIPTION | 8 LinkedMatrix-1.2.0/LinkedMatrix/MD5 | 17 LinkedMatrix-1.2.0/LinkedMatrix/NEWS.md | 7 LinkedMatrix-1.2.0/LinkedMatrix/R/ColumnLinkedMatrix.R | 114 ++- LinkedMatrix-1.2.0/LinkedMatrix/R/LinkedMatrix.R | 7 LinkedMatrix-1.2.0/LinkedMatrix/R/RowLinkedMatrix.R | 114 ++- LinkedMatrix-1.2.0/LinkedMatrix/README.md | 10 LinkedMatrix-1.2.0/LinkedMatrix/man/index.Rd | 9 LinkedMatrix-1.2.0/LinkedMatrix/tests/testthat/test-LinkedMatrix.R | 336 +++++----- 10 files changed, 363 insertions(+), 259 deletions(-)
Title: Conduct Univariate and Bivariate Wavelet Analyses
Description: This is a port of the WTC MATLAB package written by Aslak Grinsted
and the wavelet program written by Christopher Torrence and Gibert P.
Compo. This package can be used to perform univariate and bivariate
(cross-wavelet, wavelet coherence, wavelet clustering) analyses.
Author: Tarik C. Gouhier, Aslak Grinsted, Viliam Simko
Maintainer: Tarik C. Gouhier <tarik.gouhier@gmail.com>
Diff between biwavelet versions 0.20.10 dated 2016-08-28 and 0.20.11 dated 2016-08-31
DESCRIPTION | 14 +++-- MD5 | 16 ++++-- R/biwavelet-package.R | 112 +++++++++++++++++++++++------------------------ build |only inst/NEWS.Rd | 12 +++-- inst/doc |only man/biwavelet-package.Rd | 36 +++++++-------- man/enviro.data.Rd | 10 ++-- vignettes/profiling.Rmd | 11 ++-- 9 files changed, 113 insertions(+), 98 deletions(-)
Title: Atomic Force Microscope Image Analysis
Description: Provides Atomic Force Microscope images analysis such as Power
Spectral Density, roughness against lengthscale, experimental variogram and variogram models,
fractal dimension and scale. The AFM images can be exported to STL format for 3D
printing.
Author: Mathieu Beauvais [aut, cre],
Irma Liascukiene [aut],
Jessem Landoulsi [aut]
Maintainer: Mathieu Beauvais <beauvais.escp@gmail.com>
Diff between AFM versions 1.2.1 dated 2016-04-11 and 1.2.2 dated 2016-08-31
AFM-1.2.1/AFM/tests/testthat/testAFMNetworksAnalyser.R |only AFM-1.2.2/AFM/CHANGES | 6 AFM-1.2.2/AFM/DESCRIPTION | 15 AFM-1.2.2/AFM/MD5 | 62 AFM-1.2.2/AFM/NAMESPACE | 61 AFM-1.2.2/AFM/NEWS |only AFM-1.2.2/AFM/R/AFMImage.R | 71 AFM-1.2.2/AFM/R/AFMImageAnalyser.R | 20 AFM-1.2.2/AFM/R/AFMNetworksAnalyser.R | 1194 +++++++++- AFM-1.2.2/AFM/R/AFMPSDAnalyser.R | 169 + AFM-1.2.2/AFM/R/AFMVariogramAnalyser.R | 258 ++ AFM-1.2.2/AFM/R/pkgname.R | 15 AFM-1.2.2/AFM/inst/shiny/AFM-desktop/server.R | 122 - AFM-1.2.2/AFM/inst/shiny/AFM-desktop/ui.R | 43 AFM-1.2.2/AFM/man/AFMImage-extractAFMImage.Rd | 2 AFM-1.2.2/AFM/man/AFMImage-filterAFMImage.Rd |only AFM-1.2.2/AFM/man/AFMImage-makeBinaryAFMImage.Rd |only AFM-1.2.2/AFM/man/AFMImage-multiplyHeightsAFMImage.Rd |only AFM-1.2.2/AFM/man/AFMImageNetworksAnalysis-class.Rd | 48 AFM-1.2.2/AFM/man/AFMImagePSDSlopesAnalysis-class.Rd |only AFM-1.2.2/AFM/man/AFMImageVariogramAnalyser-calculateDirectionalVariograms.Rd | 2 AFM-1.2.2/AFM/man/AFMImageVariogramAnalyser-calculateOmnidirectionalVariogram.Rd | 2 AFM-1.2.2/AFM/man/AFMImageVariogramSlopesAnalysis-class.Rd |only AFM-1.2.2/AFM/man/AreNodesConnected.Rd |only AFM-1.2.2/AFM/man/calculatePhysicalDistanceFromPath.Rd |only AFM-1.2.2/AFM/man/calculateShortestPaths.Rd |only AFM-1.2.2/AFM/man/createGraph.Rd |only AFM-1.2.2/AFM/man/displaygridIgraphPlot.Rd |only AFM-1.2.2/AFM/man/displaygridIgraphPlotFromEdges.Rd |only AFM-1.2.2/AFM/man/existsSegment.Rd |only AFM-1.2.2/AFM/man/fusionCloseNodes.Rd |only AFM-1.2.2/AFM/man/getAngle.Rd |only AFM-1.2.2/AFM/man/getAutoIntersectionForOmnidirectionalVariogram.Rd |only AFM-1.2.2/AFM/man/getAutoIntersectionForRoughnessAgainstLengthscale.Rd |only AFM-1.2.2/AFM/man/getBresenham2DSegment.Rd | 3 AFM-1.2.2/AFM/man/getCircleSpatialPoints.Rd |only AFM-1.2.2/AFM/man/getIntersectionPointWithBorder.Rd |only AFM-1.2.2/AFM/man/getLogLogOmnidirectionalSlopeGraph.Rd |only AFM-1.2.2/AFM/man/getNetworkGridLayout.Rd | 9 AFM-1.2.2/AFM/man/getTriangle.Rd |only AFM-1.2.2/AFM/man/identifyEdgesFromCircles.Rd |only AFM-1.2.2/AFM/man/identifyIsolatedNodes.Rd |only AFM-1.2.2/AFM/man/identifyNodesWithCircles.Rd |only AFM-1.2.2/AFM/man/isAngleBetweenEdgesAlwaysSuperiorToMinAngle.Rd |only AFM-1.2.2/AFM/man/saveOnDiskIntersectionForRoughnessAgainstLengthscale.Rd |only AFM-1.2.2/AFM/man/transformAFMImageForNetworkAnalysis-methods.Rd |only 46 files changed, 1900 insertions(+), 202 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors. The package has been developed and tested for binary data from GENEActiv and GENEA devices and .csv-export data from Actigraph devices. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Severine Sabia [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.2-10 dated 2016-08-28 and 1.2-11 dated 2016-08-31
DESCRIPTION | 8 MD5 | 8 R/g.analyse.R | 1759 +++++++++++++++++++++++++--------------------------- inst/NEWS.Rd | 8 man/GGIR-package.Rd | 4 5 files changed, 883 insertions(+), 904 deletions(-)
Title: Detecting Change-Points via VIFCP Method
Description: Contains a function to support the following paper:
Xiaoping Shi, Xiang-Sheng Wang, Dongwei Wei, Yuehua Wu (2016), <DOI:10.1007/s00180-015-0587-5>,
A sequential multiple change-point detection procedure via VIF regression,
Computational Statistics, 31(2): 671-691.
Author: Xiaoping Shi, Xiangsheng Wang, Dongwei Wei, Yuehua Wu
Maintainer: Dongwei Wei <weidw@mathstat.yorku.ca>
Diff between VIFCP versions 1.1 dated 2015-07-02 and 1.2 dated 2016-08-31
DESCRIPTION | 12 +++++++----- MD5 | 6 +++--- man/vif.cp.Rd | 2 +- src/vifcp.f | 58 +++++++++++++++------------------------------------------- 4 files changed, 26 insertions(+), 52 deletions(-)
Title: Interactive Visual and Numerical Diagnostics and Posterior
Analysis for Bayesian Models
Description: A graphical user interface for interactive Markov chain Monte
Carlo (MCMC) diagnostics and plots and tables helpful for analyzing a
posterior sample. The interface is powered by RStudio's Shiny web
application framework and works with the output of MCMC programs written
in any programming language (and has extended functionality for Stan models
fit using the rstan and rstanarm packages).
Author: Jonah Gabry [aut, cre],
Stan Development Team [ctb],
Michael Andreae [ctb],
Michael Betancourt [ctb],
Bob Carpenter [ctb],
Yuanjun Gao [ctb],
Andrew Gelman [ctb],
Ben Goodrich [ctb],
Daniel Lee [ctb],
Dongying Song [ctb],
Rob Trangucci [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between shinystan versions 2.2.0 dated 2016-05-24 and 2.2.1 dated 2016-08-31
DESCRIPTION | 18 - MD5 | 46 +-- NAMESPACE | 2 NEWS.md | 11 R/deploy_shinystan.R | 116 ++++------ R/launch_shinystan.R | 4 R/shinystan-package.R | 45 +-- build/vignette.rds |binary data/eight_schools.rda |binary inst/ShinyStan/html/citation.html | 2 inst/ShinyStan/server.R | 25 -- inst/ShinyStan/server_files/pages/estimate/server/summary_stats.R | 41 +-- inst/ShinyStan/ui.R | 12 - inst/ShinyStan/ui_files/PAGE_estimate.R | 2 inst/ShinyStan/ui_files/bivariate_customize.R | 14 - inst/ShinyStan/ui_files/density_customize.R | 10 inst/ShinyStan/ui_files/hist_customize.R | 4 inst/ShinyStan/ui_files/multiparam_customize.R | 6 inst/ShinyStan/ui_files/table_customize.R | 18 - inst/ShinyStan/ui_files/trivariate_customize.R | 2 inst/ShinyStan/ui_utils.R | 36 +-- man/deploy_shinystan.Rd | 30 +- man/shinystan-package.Rd | 16 - tests/testthat/test_deploy_shinystan.R | 3 24 files changed, 220 insertions(+), 243 deletions(-)
Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre],
Stefan Theussl [aut],
Cyrille Szymanski [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Rsymphony versions 0.1-22 dated 2016-04-13 and 0.1-23 dated 2016-08-31
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/sparse.R | 7 +++++++ R/symphony.R | 43 ++++++++++++++++++++++++++++++++++++++++--- 4 files changed, 53 insertions(+), 9 deletions(-)
Title: Interface Between R and 'GGobi'
Description: A command-line interface to 'GGobi', an interactive and dynamic
graphics package. 'Rggobi' complements the graphical user interface of
'GGobi' providing a way to fluidly transition between analysis and
exploration, as well as automating common tasks.
Author: Duncan Temple Lang <duncan@research.bell-labs.com>,
Debby Swayne <dfs@research.att.com>,
Hadley Wickham <h.wickham@gmail.com>,
Michael Lawrence <michafla@gene.com>
Maintainer: Hadley Wickham <h.wickham@gmail.com>
Diff between rggobi versions 2.1.20 dated 2014-04-24 and 2.1.21 dated 2016-08-31
DESCRIPTION | 16 ++++++++-------- LICENSE | 2 +- MD5 | 14 +++++++------- NAMESPACE | 8 +++++++- NEWS | 5 +++++ R/longitudinal.r | 8 +++++--- man/ggobi-display-save-picture-bw.rd | 2 -- src/Makevars.in | 2 +- 8 files changed, 34 insertions(+), 23 deletions(-)
Title: Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Description: The qgraph package can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.
Author: Sacha Epskamp, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between qgraph versions 1.3.4 dated 2016-06-30 and 1.3.5 dated 2016-08-31
DESCRIPTION | 6 +++--- MD5 | 26 ++++++++++++++------------ NAMESPACE | 3 +++ NEWS | 9 ++++++++- R/PLOT.R | 14 +++++++------- R/centrality.R | 11 +++++++---- R/centralityPlot.R | 29 ++++++++++++++++++++++++++++- R/clusteringPlot.R | 27 ++++++++++++++++++++++++++- R/getWmat.R | 5 +++++ R/igraphConversion.R | 4 ++-- R/qgraph.R | 18 ++++++++++++++++-- R/smallworldIndex.R |only man/CentAndClusfuns.Rd | 30 ++++++++++++++++++++---------- man/qgraph.Rd | 7 +++++++ man/smallworldIndex.Rd |only 15 files changed, 146 insertions(+), 43 deletions(-)
Title: Functions to Calculate Relatedness on Diploid Genetic Data
Description: Functions to calculate pairwise relatedness on diploid genetic datasets. Different estimators for relatedness can be combined with information on geographical distances. Information on heterozygosity, allele- and genotype diversity as well as genetic F-statistics are provided for each population.
Author: Philipp Kraemer [aut, cre],
Gabriele Gerlach [aut]
Maintainer: Philipp Kraemer <Philipp.Kraemer@uni-oldenburg.de>
Diff between Demerelate versions 0.9 dated 2016-05-31 and 0.9-1 dated 2016-08-31
DESCRIPTION | 13 MD5 | 26 - R/Demerelate.R | 462 ++++++++++++++++---------------- R/Fis.calc.R | 354 ++++++++++++------------ R/Lin.reg.distance.R | 188 ++++++------- R/morans.R | 22 - R/morans.fin.R | 13 R/morans.fin.w.R | 16 - R/morans.w.R | 17 - R/relate.calc.R | 38 +- R/ritland.R | 3 R/stat.pops.R | 656 +++++++++++++++++++++++----------------------- man/Demerelate-package.Rd | 202 +++++++------- man/Example.Data.Rd | 2 14 files changed, 1020 insertions(+), 992 deletions(-)
Title: DataRobot Predictive Modeling API
Description: For working with the DataRobot predictive modeling platform's API. See http://www.datarobot.com/ for more information.
Author: Ron Pearson [aut], Zachary Deane-Mayer [aut], David Chudzicki [aut], Dallin Akagi [aut]
Maintainer: David Chudzicki <api-maintainer@datarobot.com>
Diff between datarobot versions 2.2.32 dated 2016-05-16 and 2.3.1 dated 2016-08-31
datarobot-2.2.32/datarobot/R/CreateAndUpload.R |only datarobot-2.2.32/datarobot/man/DeletePendingJob.Rd |only datarobot-2.2.32/datarobot/man/GetFeatures.Rd |only datarobot-2.2.32/datarobot/man/GetPendingJobs.Rd |only datarobot-2.2.32/datarobot/man/StartAutopilot.Rd |only datarobot-2.2.32/datarobot/man/as.data.frame.listOfBlueprints.Rd |only datarobot-2.3.1/datarobot/DESCRIPTION | 12 - datarobot-2.3.1/datarobot/MD5 | 110 +++++----- datarobot-2.3.1/datarobot/NAMESPACE | 19 + datarobot-2.3.1/datarobot/NEWS | 57 +++++ datarobot-2.3.1/datarobot/R/ConnectToDataRobot.R | 22 +- datarobot-2.3.1/datarobot/R/CreateFeaturelist.R | 9 datarobot-2.3.1/datarobot/R/DataRobotRequests.R | 1 datarobot-2.3.1/datarobot/R/DeleteModelJob.R | 12 - datarobot-2.3.1/datarobot/R/Enums.R | 13 + datarobot-2.3.1/datarobot/R/Exceptions.R | 3 datarobot-2.3.1/datarobot/R/FeatureImpact.R |only datarobot-2.3.1/datarobot/R/Features.R | 105 +++++++-- datarobot-2.3.1/datarobot/R/GetAllModels.R | 13 - datarobot-2.3.1/datarobot/R/GetModelFromJobId.R | 2 datarobot-2.3.1/datarobot/R/GetModelJobs.R | 25 -- datarobot-2.3.1/datarobot/R/GetPredictions.R | 5 datarobot-2.3.1/datarobot/R/GetRecommendedBlueprints.R | 22 +- datarobot-2.3.1/datarobot/R/Jobs.R | 13 + datarobot-2.3.1/datarobot/R/PredictionDatasets.R |only datarobot-2.3.1/datarobot/R/RequestNewModel.R | 9 datarobot-2.3.1/datarobot/R/RequestPredictions.R | 24 -- datarobot-2.3.1/datarobot/R/SetupProject.R | 68 +++--- datarobot-2.3.1/datarobot/R/StartAutopilot.R | 54 +--- datarobot-2.3.1/datarobot/R/TestUtilities.R |only datarobot-2.3.1/datarobot/R/WaitForAsyncReturn.R | 6 datarobot-2.3.1/datarobot/R/asDataFrame.R | 72 ++++++ datarobot-2.3.1/datarobot/inst/doc/ComparingSubsets.html | 22 +- datarobot-2.3.1/datarobot/inst/doc/IntroductionToDataRobot.R | 8 datarobot-2.3.1/datarobot/inst/doc/IntroductionToDataRobot.Rmd | 19 + datarobot-2.3.1/datarobot/inst/doc/IntroductionToDataRobot.html | 22 +- datarobot-2.3.1/datarobot/inst/doc/PartialDependence.R | 6 datarobot-2.3.1/datarobot/inst/doc/PartialDependence.Rmd | 8 datarobot-2.3.1/datarobot/inst/doc/PartialDependence.html | 26 +- datarobot-2.3.1/datarobot/inst/doc/VariableImportance.html | 8 datarobot-2.3.1/datarobot/man/ConnectToDataRobot.Rd | 11 - datarobot-2.3.1/datarobot/man/CreateDerivedFeatures.Rd |only datarobot-2.3.1/datarobot/man/DeletePredictionDataset.Rd |only datarobot-2.3.1/datarobot/man/FeatureFromAsyncUrl.Rd |only datarobot-2.3.1/datarobot/man/GetFeatureImpactForJobId.Rd |only datarobot-2.3.1/datarobot/man/GetFeatureImpactForModel.Rd |only datarobot-2.3.1/datarobot/man/GetFeatureInfo.Rd | 11 - datarobot-2.3.1/datarobot/man/GetModelJobs.Rd | 6 datarobot-2.3.1/datarobot/man/GetPredictions.Rd | 7 datarobot-2.3.1/datarobot/man/GetRecommendedBlueprints.Rd | 18 - datarobot-2.3.1/datarobot/man/JobStatus.Rd | 2 datarobot-2.3.1/datarobot/man/ListBlueprints.Rd |only datarobot-2.3.1/datarobot/man/ListFeatureInfo.Rd | 11 - datarobot-2.3.1/datarobot/man/ListPredictionDatasets.Rd |only datarobot-2.3.1/datarobot/man/PredictionDatasetFromAsyncUrl.Rd |only datarobot-2.3.1/datarobot/man/ProjectFromAsyncUrl.Rd |only datarobot-2.3.1/datarobot/man/RequestFeatureImpact.Rd |only datarobot-2.3.1/datarobot/man/RequestPredictions.Rd | 16 - datarobot-2.3.1/datarobot/man/RequestPredictionsForDataset.Rd |only datarobot-2.3.1/datarobot/man/SetTarget.Rd | 2 datarobot-2.3.1/datarobot/man/SetupProject.Rd | 26 -- datarobot-2.3.1/datarobot/man/StartNewAutoPilot.Rd | 2 datarobot-2.3.1/datarobot/man/UploadPredictionDataset.Rd |only datarobot-2.3.1/datarobot/man/as.data.frame.Rd |only datarobot-2.3.1/datarobot/tests/testthat/test-StartAutopilot.R | 63 +++-- datarobot-2.3.1/datarobot/vignettes/IntroductionToDataRobot.Rmd | 19 + datarobot-2.3.1/datarobot/vignettes/PartialDependence.Rmd | 8 67 files changed, 596 insertions(+), 401 deletions(-)
Title: Tools to Deal with Raster Maps
Description: A collection of tools to deal with raster maps.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>
Diff between adehabitatMA versions 0.3.10 dated 2015-07-22 and 0.3.11 dated 2016-08-31
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/count.points.r | 4 ++-- build/vignette.rds |binary 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>
Diff between adehabitatLT versions 0.3.20 dated 2015-07-22 and 0.3.21 dated 2016-08-31
DESCRIPTION | 8 - MD5 | 122 +++++++++++----------- R/as.ltraj.r | 82 ++++++++++++++- R/burst.r | 4 R/cutltraj.r | 7 + R/gdltraj.r | 9 + R/lavielle.r | 3 R/ld.r | 4 R/ltraj2sldf.r | 3 R/ltraj2spdf.r | 3 R/mindistkeep.r | 2 R/modpartltraj.r | 7 - R/na.omit.ltraj.r | 6 - R/offsetdate.r | 3 R/rasterize.r | 5 R/rec.r | 9 - R/redisltraj.r | 15 +- R/runsNAltraj.r | 3 R/set.limits.r | 6 + R/setNA.r | 8 + R/sett0.r | 6 + R/simm.bb.r | 6 - R/simm.brown.r | 5 R/simm.crw.r | 5 R/simm.levy.r | 4 R/simm.mba.r | 5 R/simm.mou.r | 5 R/subsample.r | 2 R/typeII2typeI.r | 2 build/vignette.rds |binary data/albatross.rda |binary data/bear.rda |binary data/buffalo.rda |binary data/capreochiz.rda |binary data/capreotf.rda |binary data/hseal.rda |binary data/ibex.rda |binary data/ibexraw.rda |binary data/mouflon.rda |binary data/porpoise.rda |binary data/puechcirc.rda |binary data/rupicabau.rda |binary data/teal.rda |binary data/whale.rda |binary inst/doc/adehabitatLT.R | 239 ++++++++++++++++++++++----------------------- inst/doc/adehabitatLT.Rnw | 25 +++- man/as.ltraj.Rd | 46 +++++--- man/cutltraj.Rd | 2 man/gdltraj.Rd | 2 man/is.sd.Rd | 2 man/ld.Rd | 5 man/residenceTime.Rd | 3 man/set.limits.Rd | 2 man/sett0.Rd | 2 man/showNAltraj.Rd | 20 +++ man/simm.bb.Rd | 5 man/simm.brown.Rd | 5 man/simm.crw.Rd | 4 man/simm.levy.Rd | 5 man/simm.mba.Rd | 5 man/simm.mou.Rd | 4 vignettes/adehabitatLT.Rnw | 25 +++- 62 files changed, 473 insertions(+), 277 deletions(-)
Title: A Stemming Algorithm for the Portuguese Language
Description: Implements the "Stemming Algorithm for the Portuguese Language" <DOI:10.1109/SPIRE.2001.10024>.
Author: Daniel Falbel
Maintainer: Daniel Falbel <dfalbel@gmail.com>
Diff between rslp versions 0.0.1 dated 2016-07-19 and 0.1.0 dated 2016-08-31
DESCRIPTION | 8 - MD5 | 22 ++--- NEWS.md |only R/apply-rules.R | 3 R/parse-rules.R | 3 R/rslp.R | 4 R/zzz.R | 6 - README.md | 4 inst/steprules.rds |binary inst/steprules.txt | 4 man/remove_accents.Rd | 2 tests/testthat/test-apply-rules.R | 161 ++++++++++++++++++++++++++++++++++++++ tests/testthat/test-rslp.R |only 13 files changed, 192 insertions(+), 25 deletions(-)
Title: Tools for Thermoluminescences Dating
Description: A series of function to make thermoluminescence dating using the MAAD or the SAR protocol.
This package completes the R package "Luminescence."
Author: David Strebler [aut, cre],
Dominik Brill [ths],
Helmut Brückner [ths]
Maintainer: David Strebler <david.strebler@uni-koeln.de>
Diff between TLdating versions 0.1.1 dated 2016-03-15 and 0.1.3 dated 2016-08-31
DESCRIPTION | 34 - MD5 | 143 ++--- NAMESPACE | 24 NEWS |only R/RLum.Analysis2TLum.Analysis.R | 26 R/Risoe.BINfileData2TLum.BIN.File.R | 33 - R/TLdating-package.R | 2 R/TLum.Analysis-class.R | 59 +- R/TLum.Analysis2TLum.BIN.File.R | 2 R/TLum.BIN.File2TLum.Analysis.R | 49 + R/TLum.BIN.File2TLum.Data.Curve.R | 89 +-- R/TLum.Results-class.R | 31 - R/analyse_TL.MAAD.R | 272 +++++---- R/analyse_TL.SAR.R | 109 ++- R/analyse_TL.plateau.R | 64 +- R/calc_TL.LxTx.R | 40 - R/calc_TL.MAAD.average.R | 100 ++- R/calc_TL.MAAD.fit.I.R | 228 ++++---- R/calc_TL.MAAD.fit.Q.R | 161 +++-- R/calc_TL.MAAD.separate.R | 141 ++--- R/calc_TL.SAR.fit.R | 183 +++--- R/calc_TL.plateau.R | 81 +- R/calc_TL.temperature.R | 12 R/mod_align.peaks.R | 83 +-- R/mod_extract.TL.R | 60 +- R/mod_extract.aliquot.R | 37 + R/mod_extract.preheat.R | 76 +- R/mod_remove.aliquot.R | 39 + R/mod_remove.preheat.R | 76 +- R/mod_substract.background.R | 87 +-- R/mod_update.dType.R | 31 - R/mod_update.error.R |only R/plot_TL.MAAD.R | 900 ++++++++++++++++----------------- R/plot_TL.SAR.R | 646 +++++++++++------------ R/plot_TL.plateau.R | 250 ++++----- R/plot_align.peaks.R | 2 R/plot_extract.TL.R | 2 R/plot_remove.preheat.R | 2 R/plot_substract.background.R | 2 R/script_TL.MAAD.R | 33 - R/script_TL.SAR.R | 13 R/script_TL.import.R | 30 - R/script_TL.plateau.R | 12 R/script_TL.pretreatment.R | 15 R/template_DRAC4brick.R |only R/template_DRAC4cave.R |only R/template_DRAC4ceramic.R |only R/template_DRAC4flint.R |only R/use_DRAC4brick.R |only R/use_DRAC4cave.R |only R/use_DRAC4ceramic.R |only R/use_DRAC4flint.R |only man/Risoe.BINfileData2TLum.BIN.File.Rd | 6 man/TLdating-package.Rd | 2 man/TLum.Analysis-class.Rd | 15 man/TLum.Results-class.Rd | 8 man/analyse_TL.MAAD.Rd | 6 man/calc_TL.LxTx.Rd | 4 man/calc_TL.MAAD.average.Rd | 4 man/calc_TL.MAAD.fit.I.Rd | 23 man/calc_TL.MAAD.fit.Q.Rd | 9 man/calc_TL.MAAD.separate.Rd | 6 man/calc_TL.SAR.fit.Rd | 5 man/calc_TL.plateau.Rd | 4 man/calc_TL.temperature.Rd | 4 man/mod_update.error.Rd |only man/plot_TL.MAAD.Rd | 23 man/plot_TL.SAR.Rd | 2 man/plot_TL.plateau.Rd | 2 man/script_TL.MAAD.Rd | 21 man/script_TL.SAR.Rd | 13 man/script_TL.import.Rd | 4 man/script_TL.plateau.Rd | 4 man/script_TL.pretreatment.Rd | 12 man/template_DRAC4brick.Rd |only man/template_DRAC4cave.Rd |only man/template_DRAC4ceramic.Rd |only man/template_DRAC4flint.Rd |only man/use_DRAC4brick.Rd |only man/use_DRAC4cave.Rd |only man/use_DRAC4ceramic.Rd |only man/use_DRAC4flint.Rd |only 82 files changed, 2492 insertions(+), 1964 deletions(-)
Title: Inference on Single Binomial Proportion and Bayesian
Computations
Description: Abundant statistical literature has revealed the importance of constructing and evaluating various methods for constructing confidence intervals (CI) for single binomial proportion (p). We comprehensively provide procedures in frequentist (approximate with or without adding pseudo counts or continuity correction or exact) and in Bayesian cultures. Evaluation procedures for CI warrant active computational attention and required summaries pertaining to four criterion (coverage probability, expected length, p-confidence, p-bias, and error) are implemented.
Author: M.Subbiah, V.Rajeswaran
Maintainer: Rajeswaran Viswanathan <v.rajeswaran@gmail.com>
Diff between proportion versions 1.2.0 dated 2016-01-17 and 1.2.3 dated 2016-08-31
proportion-1.2.0/proportion/vignettes/proportion.pdf |only proportion-1.2.3/proportion/DESCRIPTION | 7 +-- proportion-1.2.3/proportion/MD5 | 10 +++- proportion-1.2.3/proportion/build |only proportion-1.2.3/proportion/inst |only proportion-1.2.3/proportion/vignettes/proportion.Rmd | 41 +++++++----------- proportion-1.2.3/proportion/vignettes/proportion.html |only 7 files changed, 27 insertions(+), 31 deletions(-)
Title: Categorical Landscape Simulation Facilities
Description: Package is aimed at simulating categorical maps on actual geographical realms, starting from either empty landscapes, or landscapes provided by the user (e.g. land use maps). landscapeR allows to tweak or create landscapes while retaining a high degree of control on its features, without the hassle of specifying each location attribute. In this it differs from other tools which generate null or neutral landscape in a theoretical space. The basic algorithm currently implemented uses a simple agent style/cellular automata growth model, with no rules (apart from areas of exclusion). Outputs are raster dataset exportable to any common GIS format.
Author: Dario Masante [aut, cre]
Maintainer: Dario Masante <dmasan@ceh.ac.uk>
Diff between landscapeR versions 1.1 dated 2016-08-30 and 1.1.1 dated 2016-08-31
DESCRIPTION | 8 +-- MD5 | 32 +++++++------- NEWS.md | 11 +++- R/expandClass.R | 2 R/landscapeR-package.R | 9 +++ R/makeClass.R | 2 R/makeLine.R | 2 R/makePatch.R | 1 R/rmSingle.R | 48 +-------------------- inst/doc/landscapeR.R | 46 +++++++++++++++----- inst/doc/landscapeR.Rmd | 78 +++++++++++++++++++++++----------- inst/doc/landscapeR.html | 105 ++++++++++++++++++++++++++++++---------------- man/landscapeR-package.Rd | 9 +++ man/makeLine.Rd | 2 man/makePatch.Rd | 1 man/rmSingle.Rd | 2 vignettes/landscapeR.Rmd | 78 +++++++++++++++++++++++----------- 17 files changed, 264 insertions(+), 172 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.7 dated 2016-07-31 and 1.8 dated 2016-08-31
pomp-1.7/pomp/.Rinstignore |only pomp-1.7/pomp/src/SSA.f90 |only pomp-1.7/pomp/src/SSA_wrapper.c |only pomp-1.7/pomp/src/cholmodel.c |only pomp-1.7/pomp/src/dsobol.c |only pomp-1.7/pomp/src/sobol.f |only pomp-1.8/pomp/DESCRIPTION | 18 +-- pomp-1.8/pomp/MD5 | 62 +++++----- pomp-1.8/pomp/R/abc.R | 20 ++- pomp-1.8/pomp/R/bsmc.R | 9 + pomp-1.8/pomp/R/bsmc2.R | 6 + pomp-1.8/pomp/R/builder.R | 10 + pomp-1.8/pomp/R/mif.R | 4 pomp-1.8/pomp/R/mif2.R | 141 ++++++++++++------------ pomp-1.8/pomp/R/plot_pomp.R | 4 pomp-1.8/pomp/R/plugins.R | 5 pomp-1.8/pomp/R/pmcmc.R | 8 + pomp-1.8/pomp/R/pomp.R | 15 +- pomp-1.8/pomp/R/proposals.R | 19 --- pomp-1.8/pomp/R/safecall.R |only pomp-1.8/pomp/R/sobol.R | 4 pomp-1.8/pomp/build/partial.rdb |binary pomp-1.8/pomp/demo/logistic.R | 11 + pomp-1.8/pomp/demo/rw2.R | 63 +++++------ pomp-1.8/pomp/inst/NEWS | 37 ++++++ pomp-1.8/pomp/inst/NEWS.Rd | 20 +++ pomp-1.8/pomp/inst/examples/dacca.R | 204 ++++++++++++++++++++++++++++++------ pomp-1.8/pomp/inst/include/pomp.h | 5 pomp-1.8/pomp/man/design.Rd | 15 ++ pomp-1.8/pomp/man/mif2.Rd | 1 pomp-1.8/pomp/man/pomp.Rd | 10 + pomp-1.8/pomp/src/SSA_simulator.c |only pomp-1.8/pomp/src/pomp.h | 5 pomp-1.8/pomp/src/pomp_internal.h | 12 +- pomp-1.8/pomp/src/sir.c | 14 -- pomp-1.8/pomp/src/soboldata.h |only pomp-1.8/pomp/src/sobolseq.c |only pomp-1.8/pomp/src/ssa.c |only 38 files changed, 480 insertions(+), 242 deletions(-)
More information about MendelianRandomization at CRAN
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Title: Vectorised Tools for URL Handling and Parsing
Description: A toolkit for handling URLs that so far includes functions for URL
encoding and decoding, parsing, and parameter extraction. All functions are
designed to be both fast and entirely vectorised. It is intended to be
useful for people dealing with web-related datasets, such as server-side
logs, although may be useful for other situations involving large sets of
URLs.
Author: Oliver Keyes [aut, cre], Jay Jacobs [aut, cre], Mark Greenaway [ctb],
Bob Rudis [ctb], Alex Pinto [ctb], Maryam Khezrzadeh [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between urltools versions 1.5.0 dated 2016-08-04 and 1.5.1 dated 2016-08-31
DESCRIPTION | 10 +++--- MD5 | 30 +++++++++--------- NEWS | 12 +++++++ R/RcppExports.R | 6 +-- R/suffix.R | 7 ++-- R/zzz.R | 3 + data/tld_dataset.rda |binary man/param_get.Rd | 2 - src/Makevars | 2 - src/RcppExports.cpp | 13 ++++---- src/param.cpp | 9 ++--- src/parameter.cpp | 25 +++++++++------ src/parameter.h | 2 - src/suffix.cpp | 63 +++++++++++++++++++++------------------ tests/testthat/test_parameters.R | 3 + tests/testthat/test_suffixes.R | 7 ++++ 16 files changed, 114 insertions(+), 80 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Multivariate mixed model solver for multiple random effects allowing the specification of variance covariance structures. ML/REML estimates are obtained using the Average Information (AI), Expectation-Maximization (EM), Newton-Raphson (NR), or Efficient Mixed Model Association (EMMA) algorithms. Designed for genomic prediction and genome wide association studies (GWAS) to include additive, dominance and epistatic relationship structures or other covariance structures in R, but also functional as a regular mixed model program. Multivariate models (multiple responses) can be fitted currently with NR, AI and EMMA algorithms allowing multiple random effects as well. Covariance structures for the residual component is currently supported only for balanced univariate Newton Raphson.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <covarrubiasp@wisc.edu>
Diff between sommer versions 2.0 dated 2016-07-28 and 2.1 dated 2016-08-31
sommer-2.0/sommer/R/S.mat.R |only sommer-2.0/sommer/man/S.mat.Rd |only sommer-2.1/sommer/CHANGELOG | 18 + sommer-2.1/sommer/DESCRIPTION | 10 sommer-2.1/sommer/MD5 | 74 ++--- sommer-2.1/sommer/NAMESPACE | 2 sommer-2.1/sommer/R/MAI2.R | 8 sommer-2.1/sommer/R/MNR.R | 48 ++- sommer-2.1/sommer/R/NR.R | 1 sommer-2.1/sommer/R/NRR.R |only sommer-2.1/sommer/R/Rstructures.R |only sommer-2.1/sommer/R/atcg1234.R | 466 ++++++++++++++++++-------------- sommer-2.1/sommer/R/eigenGWAS.R | 4 sommer-2.1/sommer/R/mmer.R | 138 +++++++-- sommer-2.1/sommer/R/mmer2.R | 52 +++ sommer-2.1/sommer/R/mmerSNOW.R | 45 ++- sommer-2.1/sommer/R/score.calc.R | 7 sommer-2.1/sommer/data/yates.oats.RData |only sommer-2.1/sommer/inst/doc/sommer.R | 30 +- sommer-2.1/sommer/inst/doc/sommer.Rmd | 59 +++- sommer-2.1/sommer/inst/doc/sommer.pdf |binary sommer-2.1/sommer/man/AR1.mat.Rd |only sommer-2.1/sommer/man/ARMA.mat.Rd |only sommer-2.1/sommer/man/CPdata.Rd | 14 sommer-2.1/sommer/man/CS.mat.Rd |only sommer-2.1/sommer/man/D.mat.Rd | 34 +- sommer-2.1/sommer/man/FDdata.Rd | 2 sommer-2.1/sommer/man/MAI2.Rd | 5 sommer-2.1/sommer/man/MNR.Rd | 7 sommer-2.1/sommer/man/NRR.Rd |only sommer-2.1/sommer/man/RICE.Rd | 4 sommer-2.1/sommer/man/atcg1234.Rd | 4 sommer-2.1/sommer/man/cornHybrid.Rd | 24 + sommer-2.1/sommer/man/eigenGWAS.Rd | 2 sommer-2.1/sommer/man/h2.Rd | 25 + sommer-2.1/sommer/man/mmer.Rd | 76 +++-- sommer-2.1/sommer/man/mmer2.Rd | 22 + sommer-2.1/sommer/man/mmerSNOW.Rd | 7 sommer-2.1/sommer/man/sommer-package.Rd | 96 +++--- sommer-2.1/sommer/man/wheatLines.Rd | 2 sommer-2.1/sommer/man/yates.oats.Rd |only sommer-2.1/sommer/vignettes/sommer.Rmd | 59 +++- sommer-2.1/sommer/vignettes/sommer.html | 345 ++++++++++++++--------- 43 files changed, 1108 insertions(+), 582 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at http://www.ncdc.noaa.gov/cdo-web/webservices/v2, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre],
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 0.5.6 dated 2016-05-05 and 0.6.0 dated 2016-08-31
rnoaa-0.5.6/rnoaa/inst/isd_stations.rds |only rnoaa-0.6.0/rnoaa/DESCRIPTION | 33 - rnoaa-0.6.0/rnoaa/MD5 | 171 +++--- rnoaa-0.6.0/rnoaa/NAMESPACE | 22 rnoaa-0.6.0/rnoaa/NEWS.md | 81 ++ rnoaa-0.6.0/rnoaa/R/aaa.r |only rnoaa-0.6.0/rnoaa/R/ghcnd.R | 414 ++++++++++----- rnoaa-0.6.0/rnoaa/R/globals.R | 20 rnoaa-0.6.0/rnoaa/R/helpers_ghcnd.R |only rnoaa-0.6.0/rnoaa/R/isd.R | 34 - rnoaa-0.6.0/rnoaa/R/isd_stations.R | 105 --- rnoaa-0.6.0/rnoaa/R/isd_stations_search.R |only rnoaa-0.6.0/rnoaa/R/meteo-autoplot.R |only rnoaa-0.6.0/rnoaa/R/meteo_cache.r |only rnoaa-0.6.0/rnoaa/R/meteo_distance.R |only rnoaa-0.6.0/rnoaa/R/meteo_utils.r |only rnoaa-0.6.0/rnoaa/R/ncdc.r | 14 rnoaa-0.6.0/rnoaa/R/ncdc_datacats.r | 6 rnoaa-0.6.0/rnoaa/R/ncdc_datasets.r | 6 rnoaa-0.6.0/rnoaa/R/ncdc_datatypes.r | 16 rnoaa-0.6.0/rnoaa/R/ncdc_locs.r | 6 rnoaa-0.6.0/rnoaa/R/ncdc_locs_cats.r | 4 rnoaa-0.6.0/rnoaa/R/ncdc_plot.r | 3 rnoaa-0.6.0/rnoaa/R/ncdc_stations.r | 22 rnoaa-0.6.0/rnoaa/R/rnoaa-package.r | 24 rnoaa-0.6.0/rnoaa/R/seaice.r | 4 rnoaa-0.6.0/rnoaa/R/swdi.r | 4 rnoaa-0.6.0/rnoaa/R/utils.r | 3 rnoaa-0.6.0/rnoaa/R/vis_miss.R |only rnoaa-0.6.0/rnoaa/R/zzz.r | 24 rnoaa-0.6.0/rnoaa/README.md | 275 +++++---- rnoaa-0.6.0/rnoaa/build/vignette.rds |binary rnoaa-0.6.0/rnoaa/inst/doc/buoy_vignette.Rmd | 96 +-- rnoaa-0.6.0/rnoaa/inst/doc/buoy_vignette.html | 96 +-- rnoaa-0.6.0/rnoaa/inst/doc/homr_vignette.Rmd | 114 ++-- rnoaa-0.6.0/rnoaa/inst/doc/homr_vignette.html | 116 ++-- rnoaa-0.6.0/rnoaa/inst/doc/ncdc_vignette.Rmd | 55 + rnoaa-0.6.0/rnoaa/inst/doc/ncdc_vignette.html | 61 +- rnoaa-0.6.0/rnoaa/inst/doc/ncdc_workflow.Rmd | 97 ++- rnoaa-0.6.0/rnoaa/inst/doc/ncdc_workflow.html | 97 ++- rnoaa-0.6.0/rnoaa/inst/doc/rnoaa_openaq.R |only rnoaa-0.6.0/rnoaa/inst/doc/rnoaa_openaq.Rmd |only rnoaa-0.6.0/rnoaa/inst/doc/rnoaa_openaq.html |only rnoaa-0.6.0/rnoaa/inst/doc/seaice_vignette.Rmd | 4 rnoaa-0.6.0/rnoaa/inst/doc/seaice_vignette.html | 8 rnoaa-0.6.0/rnoaa/inst/doc/storms_vignette.html | 2 rnoaa-0.6.0/rnoaa/inst/doc/swdi_vignette.Rmd | 96 ++- rnoaa-0.6.0/rnoaa/inst/doc/swdi_vignette.html | 96 ++- rnoaa-0.6.0/rnoaa/inst/vign/buoy_vignette.md | 96 +-- rnoaa-0.6.0/rnoaa/inst/vign/figure/seaice1-1.png |binary rnoaa-0.6.0/rnoaa/inst/vign/figure/seaice2-1.png |binary rnoaa-0.6.0/rnoaa/inst/vign/figure/unnamed-chunk-3-1.png |binary rnoaa-0.6.0/rnoaa/inst/vign/figure/unnamed-chunk-4-1.png |binary rnoaa-0.6.0/rnoaa/inst/vign/figure/unnamed-chunk-7-1.png |binary rnoaa-0.6.0/rnoaa/inst/vign/figure/unnamed-chunk-8-1.png |binary rnoaa-0.6.0/rnoaa/inst/vign/homr_vignette.md | 114 ++-- rnoaa-0.6.0/rnoaa/inst/vign/myfile.kmz |binary rnoaa-0.6.0/rnoaa/inst/vign/myfile.zip |binary rnoaa-0.6.0/rnoaa/inst/vign/ncdc_vignette.Rmd | 5 rnoaa-0.6.0/rnoaa/inst/vign/ncdc_vignette.md | 55 + rnoaa-0.6.0/rnoaa/inst/vign/ncdc_workflow.md | 97 ++- rnoaa-0.6.0/rnoaa/inst/vign/seaice_vignette.md | 4 rnoaa-0.6.0/rnoaa/inst/vign/swdi_vignette.md | 96 ++- rnoaa-0.6.0/rnoaa/man/autoplot.meteo_coverage.Rd |only rnoaa-0.6.0/rnoaa/man/deg2rad.Rd |only rnoaa-0.6.0/rnoaa/man/ghcnd.Rd | 112 +--- rnoaa-0.6.0/rnoaa/man/ghcnd_search.Rd |only rnoaa-0.6.0/rnoaa/man/ghcnd_splitvars.Rd |only rnoaa-0.6.0/rnoaa/man/ghcnd_states.Rd |only rnoaa-0.6.0/rnoaa/man/ghcnd_stations.Rd |only rnoaa-0.6.0/rnoaa/man/isd.Rd | 12 rnoaa-0.6.0/rnoaa/man/isd_stations.Rd | 50 - rnoaa-0.6.0/rnoaa/man/isd_stations_search.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_clear_cache.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_coverage.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_distance.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_nearby_stations.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_process_geographic_data.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_pull_monitors.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_show_cache.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_spherical_distance.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_tidy_ghcnd.Rd |only rnoaa-0.6.0/rnoaa/man/meteo_tidy_ghcnd_element.Rd |only rnoaa-0.6.0/rnoaa/man/ncdc.Rd | 8 rnoaa-0.6.0/rnoaa/man/ncdc_datasets.Rd | 2 rnoaa-0.6.0/rnoaa/man/ncdc_datatypes.Rd | 4 rnoaa-0.6.0/rnoaa/man/ncdc_locs.Rd | 2 rnoaa-0.6.0/rnoaa/man/ncdc_stations.Rd | 4 rnoaa-0.6.0/rnoaa/man/print.ghcnd_stations.Rd |only rnoaa-0.6.0/rnoaa/man/rnoaa-package.Rd | 12 rnoaa-0.6.0/rnoaa/man/swdi.Rd | 2 rnoaa-0.6.0/rnoaa/man/vis_miss.Rd |only rnoaa-0.6.0/rnoaa/tests/testthat/test-isd_stations.R | 26 rnoaa-0.6.0/rnoaa/tests/testthat/test-meteo.R |only rnoaa-0.6.0/rnoaa/tests/testthat/test-ncdc_datasets.r | 8 rnoaa-0.6.0/rnoaa/vignettes/buoy_vignette.Rmd | 96 +-- rnoaa-0.6.0/rnoaa/vignettes/data |only rnoaa-0.6.0/rnoaa/vignettes/homr_vignette.Rmd | 114 ++-- rnoaa-0.6.0/rnoaa/vignettes/ncdc_vignette.Rmd | 55 + rnoaa-0.6.0/rnoaa/vignettes/ncdc_workflow.Rmd | 97 ++- rnoaa-0.6.0/rnoaa/vignettes/rnoaa_openaq.Rmd |only rnoaa-0.6.0/rnoaa/vignettes/seaice_vignette.Rmd | 4 rnoaa-0.6.0/rnoaa/vignettes/swdi_vignette.Rmd | 96 ++- 103 files changed, 1944 insertions(+), 1456 deletions(-)
Title: Kernel-Based Nonparametric ROC Regression Modelling
Description: Implements several nonparametric regression approaches for the inclusion of covariate information on the receiver operating characteristic (ROC) framework.
Author: Maria Xose Rodriguez-Alvarez [aut, cre],
Javier Roca-Pardinas [aut]
Maintainer: Maria Xose Rodriguez-Alvarez <mxrodriguez@uvigo.es>
Diff between npROCRegression versions 1.0-2 dated 2016-06-26 and 1.0-3 dated 2016-08-31
DESCRIPTION | 8 - MD5 | 24 ++--- NEWS | 7 + R/DNPROCreg.R | 31 ++++-- R/controlDNPROCreg.R | 2 R/create.design.matrices.R | 2 R/plot.DNPROCreg.R | 13 +- inst/doc/npROCRegression.Rmd | 2 inst/doc/npROCRegression.html | 16 +-- man/controlDNPROCreg.Rd | 4 man/npROCRegression-package.Rd | 4 src/npROCRegression.f90 | 182 ++++++++++++++++++++++++++--------------- vignettes/npROCRegression.Rmd | 2 13 files changed, 182 insertions(+), 115 deletions(-)
More information about npROCRegression at CRAN
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Title: IGM MEA Analysis
Description: Software tools for the characterization of neuronal networks as recorded on multi-electrode arrays.
Author: Quanli Wang, Sahar Gelfman, Diana Hall, Ryan Dhindsa
Maintainer: Sahar Gelfman <sg3261@columbia.edu>
Diff between IGM.MEA versions 0.3.3 dated 2016-08-02 and 0.3.4 dated 2016-08-31
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++-------- R/MEA_functions.R | 3 +- R/aggregate_data.R | 20 ++++++++++++++---- R/bursts.R | 18 ++++++++++------ R/perm_plot.R | 46 ++++++++++++++++++++++-------------------- R/plotDistributions.R | 13 ++++++----- data/parameters.r | 6 ++++- man/IGM.plot.distributions.Rd | 9 ++++++-- man/filter.wells.Rd | 6 +++-- 10 files changed, 90 insertions(+), 57 deletions(-)
More information about factorstochvol at CRAN
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