Title: Tools for Working with ICD-9 and ICD-10 Codes, and Finding
Comorbidities
Description: Calculate comorbidities, Charlson scores, perform fast and accurate
validation, conversion, manipulation, filtering and comparison of ICD-9 and
ICD-10 codes. Common ambiguities and code formats are handled. This
package enables a work flow from raw lists of ICD codes in hospital
billing databases to comorbidities. ICD-9 and ICD-10 comorbidity mappings
from Quan (Deyo and Elixhauser versions), Elixhauser and AHRQ included. This
package replaces icd9, which can now be uninstalled.
Author: Jack O. Wasey [aut, cre, cph],
William Murphy [ctb] (Van Walraven scores),
R Core Team [ctb, cph] (m4 macro for OpenMP detection in configure)
Maintainer: Jack O. Wasey <jack@jackwasey.com>
Diff between icd versions 2.0.1 dated 2016-04-15 and 2.1 dated 2016-09-02
icd-2.0.1/icd/man/grapes-fin-grapes.Rd |only icd-2.0.1/icd/man/icd10_comorbid_no_parent_search.Rd |only icd-2.0.1/icd/man/update_everything.Rd |only icd-2.0.1/icd/src/fastmatch.c |only icd-2.0.1/icd/src/fastmatch.h |only icd-2.1/icd/DESCRIPTION | 23 icd-2.1/icd/MD5 | 295 +++--- icd-2.1/icd/NAMESPACE | 18 icd-2.1/icd/R/RcppExports.R | 45 + icd-2.1/icd/R/children.R | 53 - icd-2.1/icd/R/comorbid.R | 397 ++++---- icd-2.1/icd/R/condense.R | 6 icd-2.1/icd/R/convert.R | 14 icd-2.1/icd/R/datadocs.R | 39 icd-2.1/icd/R/deprecated.R | 36 icd-2.1/icd/R/explain-table.R |only icd-2.1/icd/R/explain.R | 15 icd-2.1/icd/R/filter.R | 27 icd-2.1/icd/R/generate_deprecated_data.R | 7 icd-2.1/icd/R/generate_mappings.R | 10 icd-2.1/icd/R/generate_sysdata.R | 18 icd-2.1/icd/R/guess.R | 7 icd-2.1/icd/R/icd-package.R | 8 icd-2.1/icd/R/manip.R | 25 icd-2.1/icd/R/parse-comorbid.R | 223 ++++- icd-2.1/icd/R/parse-icd10.R | 153 --- icd-2.1/icd/R/parse-icd10cm-xml.R |only icd-2.1/icd/R/parse-rtf.R | 444 ++++++---- icd-2.1/icd/R/parse.R | 44 icd-2.1/icd/R/ranges.R | 104 +- icd-2.1/icd/R/real.R | 12 icd-2.1/icd/R/sas.R | 15 icd-2.1/icd/R/score.R | 21 icd-2.1/icd/R/sort.R | 20 icd-2.1/icd/R/sysdata.rda |binary icd-2.1/icd/R/util-file.R | 17 icd-2.1/icd/R/util-test.R | 4 icd-2.1/icd/R/util.R | 123 +- icd-2.1/icd/R/valid.R | 152 --- icd-2.1/icd/R/zzz.R | 3 icd-2.1/icd/README.md | 17 icd-2.1/icd/build/vignette.rds |binary icd-2.1/icd/data/datalist | 5 icd-2.1/icd/data/deprecated.RData |binary icd-2.1/icd/data/icd10_map_ahrq.RData |binary icd-2.1/icd/data/icd10_map_cc.RData |only icd-2.1/icd/data/icd10_map_elix.RData |binary icd-2.1/icd/data/icd10_map_quan_deyo.RData |binary icd-2.1/icd/data/icd10_map_quan_elix.RData |binary icd-2.1/icd/data/icd10_sub_chapters.RData |binary icd-2.1/icd/data/icd10cm2016.RData |binary icd-2.1/icd/data/icd9Chapters.rda |binary icd-2.1/icd/data/icd9_map_ahrq.RData |binary icd-2.1/icd/data/icd9_map_cc.RData |only icd-2.1/icd/data/icd9_map_elix.RData |binary icd-2.1/icd/data/icd9_map_quan_deyo.RData |binary icd-2.1/icd/data/icd9_map_quan_elix.RData |binary icd-2.1/icd/data/icd9cm_billable.RData |binary icd-2.1/icd/data/icd9cm_hierarchy.RData |binary icd-2.1/icd/data/icd_map_cc_hcc.RData |only icd-2.1/icd/data/mappingNames.rda |binary icd-2.1/icd/inst/doc/Charlson_and_other_scores.html | 55 - icd-2.1/icd/inst/doc/icd-10.html | 61 - icd-2.1/icd/inst/doc/introduction.R | 1 icd-2.1/icd/inst/doc/introduction.Rmd | 6 icd-2.1/icd/inst/doc/introduction.html | 57 - icd-2.1/icd/inst/include/icd_RcppExports.h | 57 + icd-2.1/icd/man/condense_explain_table.Rd |only icd-2.1/icd/man/condense_explain_table_worker.Rd |only icd-2.1/icd/man/expand_range_worker.Rd | 9 icd-2.1/icd/man/factor_nosort.Rd | 7 icd-2.1/icd/man/fix_rtf_duplicates.Rd |only icd-2.1/icd/man/fix_rtf_quirks_2015.Rd |only icd-2.1/icd/man/fix_unicode.Rd |only icd-2.1/icd/man/generate_deprecated_data.Rd | 5 icd-2.1/icd/man/get_non_ASCII.Rd |only icd-2.1/icd/man/icd-package.Rd | 7 icd-2.1/icd/man/icd10_chapters.Rd | 4 icd-2.1/icd/man/icd10_comorbid_parent_search.Rd | 6 icd-2.1/icd/man/icd10_parse_cc.Rd |only icd-2.1/icd/man/icd10cm_extract_sub_chapters.Rd | 2 icd-2.1/icd/man/icd9MajMinToCode.Rd |only icd-2.1/icd/man/icd9_add_leading_zeroes_cpp.Rd | 15 icd-2.1/icd/man/icd9_drop_leading_zeroes.Rd | 5 icd-2.1/icd/man/icd9_map_ahrq.Rd | 1 icd-2.1/icd/man/icd9_map_elix.Rd | 4 icd-2.1/icd/man/icd9_map_hcc.Rd |only icd-2.1/icd/man/icd9_order_short.Rd | 4 icd-2.1/icd/man/icd9_parse_ahrq_sas.Rd | 1 icd-2.1/icd/man/icd9_parse_cc.Rd |only icd-2.1/icd/man/icd9_parse_leaf_desc_ver.Rd | 8 icd-2.1/icd/man/icd9_parse_quan_deyo_sas.Rd | 1 icd-2.1/icd/man/icd_charlson.Rd | 5 icd-2.1/icd/man/icd_children_defined.Rd | 6 icd-2.1/icd/man/icd_comorbid.Rd | 50 - icd-2.1/icd/man/icd_explain.Rd | 7 icd-2.1/icd/man/icd_explain_table.Rd |only icd-2.1/icd/man/icd_explain_table_worker.Rd |only icd-2.1/icd/man/icd_filter_poa.Rd | 9 icd-2.1/icd/man/icd_filter_valid.Rd | 4 icd-2.1/icd/man/icd_get_major.Rd | 7 icd-2.1/icd/man/icd_get_missing_kids.Rd |only icd-2.1/icd/man/icd_guess_short_update.Rd | 3 icd-2.1/icd/man/icd_is_defined.Rd | 2 icd-2.1/icd/man/icd_is_valid.Rd | 4 icd-2.1/icd/man/icd_is_valid_major.Rd | 2 icd-2.1/icd/man/icd_names_elix.Rd | 1 icd-2.1/icd/man/icd_parse_cc_hierarchy.Rd |only icd-2.1/icd/man/icd_update_everything.Rd |only icd-2.1/icd/man/icd_van_walraven.Rd | 2 icd-2.1/icd/man/parse_leaf_descriptions_all.Rd | 4 icd-2.1/icd/man/parse_rtf_lines.Rd | 17 icd-2.1/icd/man/rtf_generate_fourth_lookup.Rd |only icd-2.1/icd/man/rtf_lookup_fourth.Rd |only icd-2.1/icd/man/rtf_strip.Rd | 21 icd-2.1/icd/man/shortcode_icd9.Rd |only icd-2.1/icd/man/str_extract.Rd |only icd-2.1/icd/man/str_pair_match.Rd | 3 icd-2.1/icd/man/strip.Rd | 2 icd-2.1/icd/man/unzip_to_data_raw.Rd | 2 icd-2.1/icd/src/RcppExports.cpp | 99 ++ icd-2.1/icd/src/comorbidCommon.cpp | 11 icd-2.1/icd/src/comorbidIcd10.cpp | 26 icd-2.1/icd/src/comorbidIcd10.h | 1 icd-2.1/icd/src/comorbidSetup.cpp | 2 icd-2.1/icd/src/convert.cpp | 82 + icd-2.1/icd/src/convert_alt.cpp |only icd-2.1/icd/src/manip.cpp | 18 icd-2.1/icd/src/manip_alt.cpp |only icd-2.1/icd/src/ranges.cpp | 6 icd-2.1/icd/src/test-cpp.cpp | 10 icd-2.1/icd/tests/test-deprecated.R | 6 icd-2.1/icd/tests/testthat/helper-base.R | 56 - icd-2.1/icd/tests/testthat/helper-icd10.R | 8 icd-2.1/icd/tests/testthat/test-current-attr.R | 42 icd-2.1/icd/tests/testthat/test-current-billable.R | 2 icd-2.1/icd/tests/testthat/test-current-class.R | 10 icd-2.1/icd/tests/testthat/test-current-comorbid-calcs-icd10.R | 6 icd-2.1/icd/tests/testthat/test-current-comorbid-maps-icd10.R | 3 icd-2.1/icd/tests/testthat/test-current-comorbid-maps-icd9.R | 39 icd-2.1/icd/tests/testthat/test-current-condense.R | 6 icd-2.1/icd/tests/testthat/test-current-convert.R | 23 icd-2.1/icd/tests/testthat/test-current-cpp.R | 4 icd-2.1/icd/tests/testthat/test-current-explain-table.R |only icd-2.1/icd/tests/testthat/test-current-explain.R | 10 icd-2.1/icd/tests/testthat/test-current-filter-icd10.R | 3 icd-2.1/icd/tests/testthat/test-current-guess.R | 60 + icd-2.1/icd/tests/testthat/test-current-hcc.R |only icd-2.1/icd/tests/testthat/test-current-manip.R | 4 icd-2.1/icd/tests/testthat/test-current-parse-icd10.R | 38 icd-2.1/icd/tests/testthat/test-current-parse-icd9.R | 5 icd-2.1/icd/tests/testthat/test-current-ranges.R | 30 icd-2.1/icd/tests/testthat/test-current-sas.R | 2 icd-2.1/icd/tests/testthat/test-current-spell.R | 2 icd-2.1/icd/tests/testthat/test-current-util.R | 13 icd-2.1/icd/tests/testthat/test-current-valid-icd10.R | 2 icd-2.1/icd/tests/testthat/test-current-valid.R | 11 icd-2.1/icd/tests/testthat/test-deprecated-billable.R | 20 icd-2.1/icd/tests/testthat/test-deprecated-comorbid.R | 51 - icd-2.1/icd/tests/testthat/test-deprecated-condense.R | 8 icd-2.1/icd/tests/testthat/test-deprecated-convert.R | 39 icd-2.1/icd/tests/testthat/test-deprecated-explain.R | 9 icd-2.1/icd/tests/testthat/test-deprecated-parse.R | 174 ++- icd-2.1/icd/tests/testthat/test-deprecated-ranges.R | 1 icd-2.1/icd/vignettes/introduction.Rmd | 6 165 files changed, 2223 insertions(+), 1592 deletions(-)
Title: A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix
design, along with visualizations of several common set, element and attribute
related tasks.
Author: Jake Conway [cre],
Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway@student.uml.edu>
Diff between UpSetR versions 1.2.3 dated 2016-08-01 and 1.2.4 dated 2016-09-02
DESCRIPTION | 8 +++--- MD5 | 24 ++++++++++---------- NEWS | 7 ++++++ R/MainBar.R | 5 +++- R/SizeBar.R | 7 +++++- R/upset.R | 4 +-- README.md | 8 ++++++ build/vignette.rds |binary inst/doc/attribute.plots.html | 17 ++++++-------- inst/doc/basic.usage.html | 25 ++++++++++----------- inst/doc/queries.html | 17 ++++++-------- inst/doc/set.metadata.plots.html | 45 +++++++++++++++++++-------------------- man/upset.Rd | 2 - 13 files changed, 94 insertions(+), 75 deletions(-)
Title: Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Description: Tools for retrieving, organizing, and analyzing environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System. These tools address common challenges
associated with continuous time series data for environmental decision
making.
Author: Marcus W. Beck [aut, cre]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>
Diff between SWMPr versions 2.1.5 dated 2016-03-28 and 2.1.7 dated 2016-09-02
DESCRIPTION | 12 +-- MD5 | 18 ++--- NAMESPACE | 9 ++ R/swmpr_analyze.R | 184 +++++++++++++++++++++++++++++++++++++--------------- R/swmpr_misc.R | 182 +++++++++++++++++++++++++++++++++++++++++---------- R/swmpr_retrieval.R | 8 +- man/decompTs.Rd |only man/decomp_cj.Rd | 23 ++++-- man/ecometab.Rd | 49 +++++++++++-- man/metab_day.Rd | 17 +++- man/oxySol.Rd |only 11 files changed, 377 insertions(+), 125 deletions(-)
Title: Estimating Disease Prevalence from Registry Data
Description: Estimates disease prevalence for a given index date, using existing
registry data extended with Monte Carlo simulations.
Author: Simon Crouch [aut],
Stephanie Lax [aut],
Stuart Lacy [cre, aut]
Maintainer: Stuart Lacy <stuart.lacy@york.ac.uk>
Diff between rprev versions 0.2.0 dated 2016-07-13 and 0.2.2 dated 2016-09-02
DESCRIPTION | 12 +++++----- MD5 | 18 +++++++-------- NAMESPACE | 1 NEWS.md | 8 ++++++ R/prevalence.R | 29 +++++++++++------------- inst/doc/user_guide.R | 2 - inst/doc/user_guide.Rmd | 2 - inst/doc/user_guide.html | 41 +++++++++++++++++----------------- tests/testthat/test_prevalence.R | 46 +++++++++++---------------------------- vignettes/user_guide.Rmd | 2 - 10 files changed, 75 insertions(+), 86 deletions(-)
Title: Data Mining Classification and Regression Methods
Description: Facilitates the use of data mining algorithms in classification and regression (including time series forecasting) tasks by presenting a short and coherent set of functions. Versions: 1.4.2 new NMAE metric, "xgboost" and "cv.glmnet" models (16 classification and 18 regression models); 1.4.1 new tutorial and more robust version; 1.4 - new classification and regression models/algorithms, with a total of 14 classification and 15 regression methods, including: Decision Trees, Neural Networks, Support Vector Machines, Random Forests, Bagging and Boosting; 1.3 and 1.3.1 - new classification and regression metrics (improved mmetric function); 1.2 - new input importance methods (improved Importance function); 1.0 - first version.
Author: Paulo Cortez [aut, cre]
Maintainer: Paulo Cortez <pcortez@dsi.uminho.pt>
Diff between rminer versions 1.4.1 dated 2015-07-18 and 1.4.2 dated 2016-09-02
rminer-1.4.1/rminer/data/sa_ssin-2.rda |only rminer-1.4.2/rminer/DESCRIPTION | 23 ++++---- rminer-1.4.2/rminer/MD5 | 16 ++--- rminer-1.4.2/rminer/NAMESPACE | 4 + rminer-1.4.2/rminer/R/metrics.R | 20 +++++-- rminer-1.4.2/rminer/R/model.R | 91 ++++++++++++++++++++++++++++++--- rminer-1.4.2/rminer/R/plots.R | 1 rminer-1.4.2/rminer/data/sa_ssin_2.rda |only rminer-1.4.2/rminer/man/fit.Rd | 48 +++++++++++++++-- rminer-1.4.2/rminer/man/mmetric.Rd | 9 ++- 10 files changed, 171 insertions(+), 41 deletions(-)
Title: Import Stata Data Files
Description: Function to read and write the Stata file format.
Author: Jan Marvin Garbuszus [aut],
Sebastian Jeworutzki [aut, cre],
R Core Team [cph],
Magnus Thor Torfason [ctb]
Maintainer: Sebastian Jeworutzki <Sebastian.Jeworutzki@ruhr-uni-bochum.de>
Diff between readstata13 versions 0.8.2 dated 2016-02-19 and 0.8.3 dated 2016-09-02
readstata13-0.8.2/readstata13/man/get.varlabel.Rd |only readstata13-0.8.3/readstata13/DESCRIPTION | 7 - readstata13-0.8.3/readstata13/MD5 | 41 +++++-- readstata13-0.8.3/readstata13/NAMESPACE | 3 readstata13-0.8.3/readstata13/NEWS | 7 + readstata13-0.8.3/readstata13/R/read.R | 23 ++-- readstata13-0.8.3/readstata13/R/save.R | 62 +++++++---- readstata13-0.8.3/readstata13/R/tools.R | 47 ++++++-- readstata13-0.8.3/readstata13/README.md | 7 - readstata13-0.8.3/readstata13/inst/extdata/encode.do |only readstata13-0.8.3/readstata13/inst/extdata/encode.dta |only readstata13-0.8.3/readstata13/inst/extdata/encodecp.dta |only readstata13-0.8.3/readstata13/inst/extdata/gen_fac.do |only readstata13-0.8.3/readstata13/inst/extdata/gen_fac.dta |only readstata13-0.8.3/readstata13/inst/extdata/missings.do |only readstata13-0.8.3/readstata13/inst/extdata/missings.dta |only readstata13-0.8.3/readstata13/inst/extdata/nonint.do |only readstata13-0.8.3/readstata13/inst/extdata/nonint.dta |only readstata13-0.8.3/readstata13/inst/extdata/statacar.RData |only readstata13-0.8.3/readstata13/inst/extdata/statacar_strl.dta |only readstata13-0.8.3/readstata13/inst/extdata/underscore.do |only readstata13-0.8.3/readstata13/inst/extdata/underscore.dta |only readstata13-0.8.3/readstata13/man/read.dta13.Rd | 16 +- readstata13-0.8.3/readstata13/man/save.dta13.Rd | 4 readstata13-0.8.3/readstata13/man/saveToExport.Rd |only readstata13-0.8.3/readstata13/man/set.lang.Rd | 4 readstata13-0.8.3/readstata13/man/varlabel.Rd |only readstata13-0.8.3/readstata13/src/read_dta.cpp | 26 +++- readstata13-0.8.3/readstata13/tests |only 29 files changed, 175 insertions(+), 72 deletions(-)
Title: Survival Trees to Fit Left-Truncated and Right-Censored Survival
Data
Description: Recursive partition algorithms designed for fitting survival tree
with left-truncated and right censored (LTRC) data. Such LTRC trees can also
be used to fit survival tree with time-varying covariates.
Author: Wei Fu [aut, cre],
Jeffrey Simonoff [aut]
Maintainer: Wei Fu <weifu.scott@gmail.com>
Diff between LTRCtrees versions 0.1.0 dated 2016-06-13 and 0.1.5 dated 2016-09-02
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/LTRCART.R | 9 +++++++++ inst/doc/LTRCtrees.R | 6 ++++++ inst/doc/LTRCtrees.Rmd | 9 ++++++++- inst/doc/LTRCtrees.html | 12 +++++++++--- man/LTRCART.Rd | 9 +++++++++ vignettes/LTRCtrees.Rmd | 9 ++++++++- 8 files changed, 59 insertions(+), 15 deletions(-)
Title: Lake Morphometry Metrics in R
Description: Lake morphometry metrics are used by limnologists to understand,
among other things, the ecological processes in a lake. Traditionally, these
metrics are calculated by hand, with planimeters, and increasingly with
commercial GIS products. All of these methods work; however, they are either
outdated, difficult to reproduce, or require expensive licenses to use. The
\code{lakemorpho} package provides the tools to calculate a typical suite
of these metrics from an input elevation model and lake polygon. The metrics
currently supported are: fetch, maximum length, maximum width, mean width,
maximum depth, mean depth, shoreline development, shoreline length, surface
area, and volume.
Author: Jeffrey W. Hollister [aut, cre]
Maintainer: Jeffrey W. Hollister <hollister.jeff@epa.gov>
Diff between lakemorpho versions 1.0.2 dated 2016-05-13 and 1.0.3 dated 2016-09-02
lakemorpho-1.0.2/lakemorpho/vignettes |only lakemorpho-1.0.3/lakemorpho/DESCRIPTION | 8 ++++---- lakemorpho-1.0.3/lakemorpho/MD5 | 17 ++--------------- lakemorpho-1.0.3/lakemorpho/README.md | 2 +- 4 files changed, 7 insertions(+), 20 deletions(-)
Title: Chi-Square and Exact Tests for Non-Parametric Functional
Dependencies
Description: Statistical hypothesis testing methods for non-parametric functional dependencies using asymptotic chi-square or exact statistics. These tests were motivated to reveal evidence for causality based on functional dependencies. They include asymptotic functional chi-square tests, an exact functional test, a comparative functional chi-square test, and also a comparative chi-square test. The normalized non-constant functional chi-square test was used by Best Performer NMSUSongLab in HPN-DREAM (DREAM8) Breast Cancer Network Inference Challenges. For continuous data, these tests offer an advantage over regression analysis when a parametric functional form cannot be assumed; for categorical data, they provide a novel means to assess directional dependencies not possible with symmetrical Pearson's chi-square or Fisher's exact tests.
Author: Yang Zhang, Hua Zhong, and Joe Song
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between FunChisq versions 2.3.2 dated 2016-09-01 and 2.3.3 dated 2016-09-02
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 5 +++++ inst/doc/exact.fun.test.Rmd | 8 ++++---- inst/doc/exact.fun.test.html | 17 ++++++++--------- inst/doc/fun.chisq.test.Rmd | 4 ++-- inst/doc/fun.chisq.test.html | 13 ++++++------- man/FunChisq-package.Rd | 2 +- 8 files changed, 37 insertions(+), 34 deletions(-)
Title: Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
Description: Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics. eRah outputs a table with compound names, matching scores and the integrated area of the compound for each sample.
Author: Xavier Domingo-Almenara, Sara Samino, Maria Vinaixa, Alexandre Perera, Oscar Yanes
Maintainer: Xavier Domingo-Almenara <xavier.domingo@urv.cat>
Diff between erah versions 1.0.1 dated 2016-04-22 and 1.0.2 dated 2016-09-02
DESCRIPTION | 8 ++-- MD5 | 41 +++++++++++----------- NAMESPACE | 2 - NEWS | 13 ++++++- R/DB.R | 88 ++++++++++++++++++++++++++++++++++++++++++++++++ R/erah.R | 3 + R/file.R | 3 + R/identification.R | 2 - R/missingCompRecovery.R | 1 R/preprocessing.R | 4 +- R/processing.R | 11 ++++-- R/support_methods.R | 8 +++- R/zzz.R | 4 +- inst/doc/eRahManual.pdf |binary man/alignComp.Rd | 2 - man/deconvolveComp.Rd | 4 +- man/export2MSP.Rd |only man/identifyComp.Rd | 5 +- man/newExp.Rd | 2 - man/recMissComp.Rd | 4 +- man/setAlPar.Rd | 3 - man/setDecPar.Rd | 3 - 22 files changed, 161 insertions(+), 50 deletions(-)
Title: Dose-Response Data Evaluation
Description: A somewhat outdated package of basic and easy-to-use functions for
fitting dose-response curves to continuous dose-response data, calculating some
(eco)toxicological parameters and plotting the results. Please consider using
the more powerful and actively developed 'drc' package. Functions that are
fitted are the cumulative density function of the lognormal distribution
(probit fit), of the logistic distribution (logit fit), of the weibull
distribution (weibull fit) and a linear-logistic model ('linlogit' fit),
derived from the latter, which is used to describe data showing stimulation at
low doses (hormesis). In addition, functions checking, plotting and retrieving
dose-response data retrieved from a database accessed via 'RODBC' are included.
As an alternative to the original fitting methods, the algorithms from the 'drc'
package can be used.
Author: Johannes Ranke [aut, cre]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between drfit versions 0.6.4 dated 2015-10-07 and 0.6.7 dated 2016-09-02
ChangeLog |only DESCRIPTION | 14 +++++++------- MD5 | 11 ++++++----- NAMESPACE | 1 + R/drcfit.R | 41 ++++++++++++++++++++++++++--------------- data/XY.rda |binary inst/doc/drfit-Rnews.pdf |binary 7 files changed, 40 insertions(+), 27 deletions(-)
Title: Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal
and Spatial Clonal Evolutionary History by Next-Generation
Sequencing
Description: A statistical framework and computational procedure for identifying
the sub-populations within a tumor, determining the mutation profiles of each
subpopulation, and inferring the tumor's phylogenetic history. The input are
variant allele frequencies (VAFs) of somatic single nucleotide alterations
(SNAs) along with allele-specific coverage ratios between the tumor and matched
normal sample for somatic copy number alterations (CNAs). These quantities can
be directly taken from the output of existing software. Canopy provides a
general mathematical framework for pooling data across samples and sites to
infer the underlying parameters. For SNAs that fall within CNA regions, Canopy
infers their temporal ordering and resolves their phase. When there are
multiple evolutionary configurations consistent with the data, Canopy outputs
all configurations along with their confidence assessment.
Author: Yuchao Jiang, Nancy R. Zhang
Maintainer: Yuchao Jiang <yuchaoj@wharton.upenn.edu>
Diff between Canopy versions 1.0.0 dated 2015-10-29 and 1.1.1 dated 2016-09-02
DESCRIPTION | 23 ++ MD5 | 30 ++- NAMESPACE | 3 NEWS | 8 - R/canopy.BIC.R | 4 R/canopy.plottree.R | 32 +++- R/canopy.post.R | 182 +++++++++++----------- R/canopy.sample.R | 328 +++++++++++++++++++++-------------------- build/vignette.rds |binary data/toy2.rda |only inst/doc/Canopy_vignettes.R | 99 +++++++++--- inst/doc/Canopy_vignettes.Rnw | 144 +++++++++++++----- inst/doc/Canopy_vignettes.pdf |binary man/MDA231_sampchain.Rd | 40 ++--- man/canopy.plottree.Rd | 12 + man/toy2.Rd |only vignettes/Canopy_vignettes.Rnw | 144 +++++++++++++----- 17 files changed, 648 insertions(+), 401 deletions(-)
Title: Supplemental S-PLUS Functionality in R
Description: Currently there are many functions in S-PLUS that are
missing in R. To facilitate the conversion of S-PLUS packages
to R packages, this package provides some missing S-PLUS
functionality in R.
Author: William Constantine, Tim Hesterberg, Knut Wittkowski, Tingting
Song, Stephen Kaluzny
Maintainer: Stephen Kaluzny <skaluzny@tibco.com>
Diff between splus2R versions 1.2-1 dated 2016-05-20 and 1.2-2 dated 2016-09-02
DESCRIPTION | 6 ++--- MD5 | 4 +-- src/peaks.f | 71 ++++++++++++++++++++++++++++++------------------------------ 3 files changed, 41 insertions(+), 40 deletions(-)
Title: Session Reconstruction and Analysis
Description: Functions to aid in reconstructing sessions
and efficiently calculating an array of metrics from the resulting data,
including bounce rate, time-on-page, and session length. Although primarily
designed for web data and analytics, its approach is plausibly applicable
to other domains.
Author: Oliver Keyes
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between reconstructr versions 1.1.0 dated 2015-05-31 and 1.1.1 dated 2016-09-02
reconstructr-1.1.0/reconstructr/data/session_dataset.RData |only reconstructr-1.1.1/reconstructr/DESCRIPTION | 13 reconstructr-1.1.1/reconstructr/MD5 | 42 - reconstructr-1.1.1/reconstructr/NAMESPACE | 3 reconstructr-1.1.1/reconstructr/NEWS | 7 reconstructr-1.1.1/reconstructr/R/metrics.R | 4 reconstructr-1.1.1/reconstructr/R/parameter_fillers.R | 3 reconstructr-1.1.1/reconstructr/README.md | 2 reconstructr-1.1.1/reconstructr/build/vignette.rds |binary reconstructr-1.1.1/reconstructr/data/session_dataset.rda |only reconstructr-1.1.1/reconstructr/inst/doc/Introduction.Rmd | 49 - reconstructr-1.1.1/reconstructr/inst/doc/Introduction.html | 369 ++++-------- reconstructr-1.1.1/reconstructr/man/bounce_rate.Rd | 2 reconstructr-1.1.1/reconstructr/man/event_time.Rd | 5 reconstructr-1.1.1/reconstructr/man/padding_value.Rd | 4 reconstructr-1.1.1/reconstructr/man/reconstruct_sessions.Rd | 4 reconstructr-1.1.1/reconstructr/man/reconstructr.Rd | 2 reconstructr-1.1.1/reconstructr/man/session_dataset.Rd | 2 reconstructr-1.1.1/reconstructr/man/session_events.Rd | 2 reconstructr-1.1.1/reconstructr/man/session_length.Rd | 2 reconstructr-1.1.1/reconstructr/man/to_seconds.Rd | 2 reconstructr-1.1.1/reconstructr/src/Makevars | 2 reconstructr-1.1.1/reconstructr/vignettes/Introduction.Rmd | 49 - 23 files changed, 256 insertions(+), 312 deletions(-)
Title: Numerical Calibration of Proxy-Climate Relationships
Description: Bootstrapped response and correlation functions,
seasonal correlations and evaluation of reconstruction
skills for use in dendroclimatology and dendroecology.
Author: Christian Zang [aut, cre, cph, trl],
Franco Biondi [ctb, cph]
Maintainer: Christian Zang <christian.zang@wzw.tum.de>
Diff between treeclim versions 1.0.16 dated 2016-03-14 and 2.0.0 dated 2016-09-02
treeclim-1.0.16/treeclim/tests/run-all.R |only treeclim-2.0.0/treeclim/DESCRIPTION | 10 treeclim-2.0.0/treeclim/MD5 | 88 +- treeclim-2.0.0/treeclim/NAMESPACE | 8 treeclim-2.0.0/treeclim/R/apply_var_names.R |only treeclim-2.0.0/treeclim/R/as_tcclimate.R | 6 treeclim-2.0.0/treeclim/R/check_ci.R |only treeclim-2.0.0/treeclim/R/check_months.R | 12 treeclim-2.0.0/treeclim/R/correct_continuous.R | 18 treeclim-2.0.0/treeclim/R/dcc.R | 350 +++++----- treeclim-2.0.0/treeclim/R/dlm.R |only treeclim-2.0.0/treeclim/R/exclude_from.R | 52 + treeclim-2.0.0/treeclim/R/format_months.R | 16 treeclim-2.0.0/treeclim/R/generics.R | 126 ++- treeclim-2.0.0/treeclim/R/gershunov.R | 10 treeclim-2.0.0/treeclim/R/make_pmat.R | 42 - treeclim-2.0.0/treeclim/R/seascorr.R | 178 ++--- treeclim-2.0.0/treeclim/R/selection_funs.R | 36 - treeclim-2.0.0/treeclim/R/shift_year.R |only treeclim-2.0.0/treeclim/R/skills.R | 193 +++-- treeclim-2.0.0/treeclim/R/tc_design.R | 13 treeclim-2.0.0/treeclim/R/tc_efunc.R |only treeclim-2.0.0/treeclim/R/tc_mfunc.R | 12 treeclim-2.0.0/treeclim/R/tcase.R |only treeclim-2.0.0/treeclim/R/traceplot.R |only treeclim-2.0.0/treeclim/R/truncate_input.R | 96 +- treeclim-2.0.0/treeclim/R/unify_selection.R |only treeclim-2.0.0/treeclim/README.md | 45 - treeclim-2.0.0/treeclim/inst/Changelog | 35 - treeclim-2.0.0/treeclim/man/apply_var_names.Rd |only treeclim-2.0.0/treeclim/man/check_months.Rd | 4 treeclim-2.0.0/treeclim/man/dcc.Rd | 262 +++---- treeclim-2.0.0/treeclim/man/dlm.Rd |only treeclim-2.0.0/treeclim/man/exclude_from.Rd | 11 treeclim-2.0.0/treeclim/man/g_test.Rd | 2 treeclim-2.0.0/treeclim/man/make_pmat.Rd | 6 treeclim-2.0.0/treeclim/man/seascorr.Rd | 102 +- treeclim-2.0.0/treeclim/man/shift_year.Rd |only treeclim-2.0.0/treeclim/man/skills.Rd | 92 +- treeclim-2.0.0/treeclim/man/tc_efunc.Rd |only treeclim-2.0.0/treeclim/man/tc_mfunc.Rd | 2 treeclim-2.0.0/treeclim/man/traceplot.Rd |only treeclim-2.0.0/treeclim/man/treeclim-modifiers.Rd | 34 treeclim-2.0.0/treeclim/man/treeclim-shifters.Rd |only treeclim-2.0.0/treeclim/man/truncate_input.Rd | 2 treeclim-2.0.0/treeclim/man/unify_selection.Rd |only treeclim-2.0.0/treeclim/tests/testthat.R |only treeclim-2.0.0/treeclim/tests/testthat/test_aggregators.R | 9 treeclim-2.0.0/treeclim/tests/testthat/test_apply_var_names.R |only treeclim-2.0.0/treeclim/tests/testthat/test_dcc.R |only treeclim-2.0.0/treeclim/tests/testthat/test_eval_selection.R | 6 treeclim-2.0.0/treeclim/tests/testthat/test_evolving_functions.R |only treeclim-2.0.0/treeclim/tests/testthat/test_month_processing.R | 45 + treeclim-2.0.0/treeclim/tests/testthat/test_seascorr.R |only treeclim-2.0.0/treeclim/tests/testthat/test_skills.R |only treeclim-2.0.0/treeclim/tests/testthat/test_truncation.R | 8 56 files changed, 1123 insertions(+), 808 deletions(-)
Title: SOM Bound to Realize Euclidean and Relational Outputs
Description: The stochastic (also called on-line) version of the Self-Organising
Map (SOM) algorithm is provided. Different versions of the
algorithm are implemented, for numeric and relational data and for
contingency tables. The package also contains many plotting
features (to help the user interpret the results) and a graphical
user interface based on shiny.
Author: Laura Bendhaiba [aut],
Julien Boelaert [aut],
Jerome Mariette [aut],
Madalina Olteanu [aut],
Fabrice Rossi [aut],
Nathalie Villa-Vialaneix [aut, cre]
Maintainer: Nathalie Villa-Vialaneix <nathalie.villa@toulouse.inra.fr>
Diff between SOMbrero versions 1.1 dated 2015-11-04 and 1.2 dated 2016-09-02
DESCRIPTION | 17 +- MD5 | 54 +++---- NEWS | 10 + R/init.R | 4 R/plots.R | 2 R/som.R | 203 +++++++++++++++++++------- build/vignette.rds |binary data/lesmis.rda |binary inst/CITATION | 12 + inst/doc/doc-SOMbrero-package.Rmd | 2 inst/doc/doc-SOMbrero-package.html | 4 inst/doc/doc-grids.html | 4 inst/doc/doc-korrespSOM.R | 7 inst/doc/doc-korrespSOM.Rmd | 104 ++++++------- inst/doc/doc-korrespSOM.html | 282 ++++++++++++++++++------------------- inst/doc/doc-numericSOM.Rmd | 2 inst/doc/doc-numericSOM.html | 84 +++++------ inst/doc/doc-relationalSOM.Rmd | 6 inst/doc/doc-relationalSOM.html | 60 ++++--- man/SOMbrero-package.Rd | 19 +- man/lesmis.Rd | 4 man/trainSOM.Rd | 11 + tests/prediction-test.R | 19 ++ vignettes/doc-SOMbrero-package.Rmd | 2 vignettes/doc-korrespSOM.Rmd | 104 ++++++------- vignettes/doc-numericSOM.Rmd | 2 vignettes/doc-relationalSOM.Rmd | 6 vignettes/foodweb.png |binary 28 files changed, 572 insertions(+), 452 deletions(-)
Title: Solving Ordinary Differential Equations to Understand
Luminescence
Description: A collection of functions to simulate luminescence signals in the
mineral quartz based on published models.
Author: Johannes Friedrich [aut, trl, cre],
Sebastian Kreutzer [aut, ths],
Christoph Schmidt [aut, ths]
Maintainer: Johannes Friedrich <johannes.friedrich@uni-bayreuth.de>
Diff between RLumModel versions 0.1.1 dated 2016-05-03 and 0.1.2 dated 2016-09-02
DESCRIPTION | 17 +++++----- MD5 | 41 +++++++++++++----------- NEWS | 62 +++++++++++++++++++++++++++++++++++-- R/RLumModel-package.R | 12 ++++--- R/model_LuminescenceSignals.R | 44 +++++++++++++------------- R/set_ODE.R | 15 +------- R/set_ODE_LM_OSL.R | 5 -- R/set_pars.R | 8 ++-- R/simulate_CW_OSL.R | 4 +- R/simulate_LM_OSL.R | 4 +- R/simulate_RF.R | 13 ++++--- R/simulate_illumination.R | 6 ++- R/simulate_irradiation.R | 17 +++++----- R/translate_sequence.R | 4 +- build |only data/ExampleData.ModelOutput.RData |binary inst/NEWS.Rd | 59 ++++++++++++++++++++++++++++++++++- inst/doc |only man/ExampleData.ModelOutput.Rd | 6 ++- man/RLumModel-package.Rd | 4 +- man/model_LuminescenceSignals.Rd | 44 +++++++++++++------------- vignettes |only 22 files changed, 239 insertions(+), 126 deletions(-)
Title: Nonparametric and Stochastic Efficiency and Productivity
Analysis
Description: Provides a variety of tools for nonparametric and parametric efficiency measurement.
Author: Oleg Badunenko [aut, cre],
Yaryna Kolomiytseva [aut],
Pavlo Mozharovskyi [aut]
Maintainer: Oleg Badunenko <obadunen@uni-koeln.de>
Diff between npsf versions 0.1.8 dated 2016-07-05 and 0.1.9 dated 2016-09-02
ChangeLog | 12 + DESCRIPTION | 8 - MD5 | 28 ++-- NAMESPACE | 2 R/npsf-internal.R | 302 +++++++++++++++++++++++++++++++++++++++++++++++-- R/nptestind.R | 2 R/nptestrts.R | 3 R/print.summary.npsf.R | 56 ++++++++- R/sf.R | 8 - R/tenonradial.R | 3 R/teradial.R | 10 - R/teradialbc.R | 3 R/truncreg.R |only data/mroz.txt.gz |only man/mroz.Rd |only man/truncreg.Rd |only src/nonradial.c | 3 17 files changed, 396 insertions(+), 44 deletions(-)
Title: Visualization of Categorical Response Models
Description: Notice: The package EffectStars2 provides a more up-to-date implementation of effect stars! EffectStars provides functions to visualize regression models with categorical response. The effects of the variables are plotted with star plots in order to allow for an optical impression of the fitted model.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther.schauberger@stat.uni-muenchen.de>
Diff between EffectStars versions 1.6 dated 2016-02-29 and 1.7 dated 2016-09-02
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/star.nominal.r | 9 +++++++++ R/star.nominalglob.R | 9 +++++---- man/EffectStars-package.Rd | 2 ++ man/election.Rd | 3 ++- man/star.cumulative.Rd | 2 ++ man/star.nominal.Rd | 5 ++++- man/star.sequential.Rd | 2 ++ 9 files changed, 39 insertions(+), 19 deletions(-)
Title: Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Description: Time series clustering along with optimized techniques related
to the Dynamic Time Warping distance and its corresponding lower bounds.
Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole
clustering are available. Functionality can be easily extended with
custom distance measures and centroid definitions.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>
Diff between dtwclust versions 2.1.2 dated 2016-06-06 and 2.2.0 dated 2016-09-02
dtwclust-2.1.2/dtwclust/R/kcca-list.R |only dtwclust-2.1.2/dtwclust/inst/REFERENCES.bib |only dtwclust-2.2.0/dtwclust/DESCRIPTION | 27 dtwclust-2.2.0/dtwclust/MD5 | 83 dtwclust-2.2.0/dtwclust/NAMESPACE | 2 dtwclust-2.2.0/dtwclust/R/DBA.R | 409 ++- dtwclust-2.2.0/dtwclust/R/SBD.R | 437 +--- dtwclust-2.2.0/dtwclust/R/TADPole.R | 640 ++--- dtwclust-2.2.0/dtwclust/R/all_cent.R | 436 ++-- dtwclust-2.2.0/dtwclust/R/cvi.R |only dtwclust-2.2.0/dtwclust/R/ddist.R | 370 +-- dtwclust-2.2.0/dtwclust/R/dtw-lb.R | 99 dtwclust-2.2.0/dtwclust/R/dtwclust-classes.R | 4 dtwclust-2.2.0/dtwclust/R/dtwclust-methods.R | 1348 +++++++----- dtwclust-2.2.0/dtwclust/R/dtwclust.R | 1740 ++++++++-------- dtwclust-2.2.0/dtwclust/R/fuzzy.R |only dtwclust-2.2.0/dtwclust/R/lb-improved.R | 144 - dtwclust-2.2.0/dtwclust/R/lb-keogh.R | 120 - dtwclust-2.2.0/dtwclust/R/partitional.R |only dtwclust-2.2.0/dtwclust/R/pkg.R | 36 dtwclust-2.2.0/dtwclust/R/shape-extraction.R | 268 +- dtwclust-2.2.0/dtwclust/R/utils.R | 454 ++-- dtwclust-2.2.0/dtwclust/README.md | 127 - dtwclust-2.2.0/dtwclust/build |only dtwclust-2.2.0/dtwclust/inst/NEWS.Rd | 11 dtwclust-2.2.0/dtwclust/inst/doc |only dtwclust-2.2.0/dtwclust/inst/dtwclust-examples.R | 26 dtwclust-2.2.0/dtwclust/man/DBA.Rd | 17 dtwclust-2.2.0/dtwclust/man/SBD.Rd | 4 dtwclust-2.2.0/dtwclust/man/TADPole.Rd | 4 dtwclust-2.2.0/dtwclust/man/cvi.Rd |only dtwclust-2.2.0/dtwclust/man/dtw_lb.Rd | 24 dtwclust-2.2.0/dtwclust/man/dtwclust-class.Rd | 2 dtwclust-2.2.0/dtwclust/man/dtwclust-methods.Rd | 7 dtwclust-2.2.0/dtwclust/man/dtwclust-package.Rd | 18 dtwclust-2.2.0/dtwclust/man/dtwclust.Rd | 57 dtwclust-2.2.0/dtwclust/man/lb_improved.Rd | 21 dtwclust-2.2.0/dtwclust/man/lb_keogh.Rd | 21 dtwclust-2.2.0/dtwclust/man/shape_extraction.Rd | 10 dtwclust-2.2.0/dtwclust/src/envelop.cpp | 5 dtwclust-2.2.0/dtwclust/tests/testthat/helper_all.R | 5 dtwclust-2.2.0/dtwclust/tests/testthat/test_centroids.R | 313 +- dtwclust-2.2.0/dtwclust/tests/testthat/test_cvis.R |only dtwclust-2.2.0/dtwclust/tests/testthat/test_lbs.R |only dtwclust-2.2.0/dtwclust/tests/testthat/test_pairwise.R | 8 dtwclust-2.2.0/dtwclust/vignettes |only 46 files changed, 3905 insertions(+), 3392 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-12 1.2.4
2015-12-19 1.2.3
2015-12-11 1.2.2
2015-12-02 1.2.1
2015-11-23 1.2.0
2015-09-30 1.1.1
2015-09-09 1.1.0
2015-08-29 1.0.1
Title: Download and Process Data from the Paleobiology Database
Description: Includes 19 functions to wrap each endpoint of
the PaleobioDB API, plus 8 functions to visualize and process the fossil
data. The API documentation for the Paleobiology Database can be found in
<http://paleobiodb.org/data1.1/>.
Author: Sara Varela [aut, cre],
Javier González Hernández [aut],
Luciano Fabris Sgarbi [aut]
Maintainer: Sara Varela <svarela@paleobiogeography.org>
Diff between paleobioDB versions 0.3 dated 2014-11-24 and 0.5.0 dated 2016-09-02
DESCRIPTION | 15 MD5 | 94 - NAMESPACE | 86 - R/network.R | 262 ++-- R/paleobioDB-package.R | 175 +-- R/pbdb_cache.R | 242 ++-- R/pbdb_geographic_functions.R | 571 +++++----- R/pbdb_querys.R | 1562 ++++++++++++++--------------- R/pbdb_rest_api_setup.R | 212 +-- R/pbdb_taxonomic_functions.R | 96 - R/pbdb_temporal_functions.R | 746 ++++++------- R/rest_api_tools.R | 256 ++-- README.md | 616 +++++------ man/paleobioDB.Rd | 190 +-- man/pbdb_collection.Rd | 74 - man/pbdb_collections.Rd | 53 man/pbdb_collections_geo.Rd | 65 - man/pbdb_interval.Rd | 63 - man/pbdb_intervals.Rd | 68 - man/pbdb_map.Rd | 104 - man/pbdb_map_occur.Rd | 96 - man/pbdb_map_richness.Rd | 106 + man/pbdb_occurrence.Rd | 72 - man/pbdb_occurrences.Rd | 127 +- man/pbdb_orig_ext.Rd | 103 - man/pbdb_ref_collections.Rd | 70 - man/pbdb_ref_occurrences.Rd | 82 - man/pbdb_ref_taxa.Rd | 87 - man/pbdb_reference.Rd | 63 - man/pbdb_references.Rd | 67 - man/pbdb_richness.Rd | 79 - man/pbdb_scale.Rd | 64 - man/pbdb_scales.Rd | 62 - man/pbdb_strata.Rd | 95 - man/pbdb_strata_auto.Rd | 91 - man/pbdb_subtaxa.Rd | 66 - man/pbdb_taxa.Rd | 108 +- man/pbdb_taxa_auto.Rd | 63 - man/pbdb_taxon.Rd | 63 - man/pbdb_temp_range.Rd | 73 - man/pbdb_temporal_resolution.Rd | 53 tests/testthat/test-all_basic_queries.R | 316 ++--- tests/testthat/test-apitools.R | 110 +- tests/testthat/test-geographic_functions.R | 82 - tests/testthat/test-parse_api_data.R | 98 - tests/testthat/test-pbdb_api_query.R | 82 - tests/testthat/test-taxonomic_functions.R | 24 tests/testthat/test-temporal_functions.R | 96 - 48 files changed, 4080 insertions(+), 3968 deletions(-)
Title: Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Description: Traditional and spatial capture-mark-recapture analysis with
multiple non-invasive marks. The models implemented in 'multimark' combine
encounter history data arising from two different non-invasive ``marks'',
such as images of left-sided and right-sided pelage patterns of bilaterally
asymmetrical species, to estimate abundance and related demographic
parameters while accounting for imperfect detection. Bayesian models are
specified using simple formulae and fitted using Markov chain Monte Carlo.
Addressing deficiencies in currently available software, 'multimark' also
provides a user-friendly interface for performing Bayesian multimodel
inference using non-spatial or spatial capture-recapture data consisting of a single
conventional mark or multiple non-invasive marks.
Author: Brett T. McClintock [aut, cre],
Acho Arnold [ctb, cph] (C original matrix library,
https://github.com/najela/matrix.h),
Barry Brown [ctb] (Fortran original ranlib library),
James Lovato [ctb] (Fortran original ranlib library),
John Burkardt [ctb] (C original ranlib library,
http://people.sc.fsu.edu/~jburkardt/c_src/ranlib),
Cleve Moler [ctb] (C original linpack library,
http://www.kkant.net/geist/ranlib/),
Arjun Gopalaswamy [ctb] (modified snippets of R package SPACECAP code)
Maintainer: Brett T. McClintock <brett.mcclintock@noaa.gov>
Diff between multimark versions 1.3.2 dated 2016-02-12 and 2.0.0 dated 2016-09-02
DESCRIPTION | 28 + MD5 | 49 +- NAMESPACE | 18 - NEWS | 11 R/Closed.R | 115 +++++- R/ClosedSCR.R |only R/multimark_functions.R | 694 ++++++++++++++++++++++++++++++++++------- data/tiger.RData |only man/bobcat.Rd | 6 man/getdensityClosedSCR.Rd |only man/getprobsCJS.Rd | 6 man/getprobsClosed.Rd | 4 man/getprobsClosedSCR.Rd |only man/markCJS.Rd | 2 man/markClosed.Rd | 2 man/markClosedSCR.Rd |only man/multimarkCJS.Rd | 4 man/multimarkClosed.Rd | 6 man/multimarkClosedSCR.Rd |only man/multimarkSCRsetup-class.Rd |only man/multimarksetup-class.Rd | 2 man/multimodelCJS.Rd | 2 man/multimodelClosed.Rd | 18 - man/multimodelClosedSCR.Rd |only man/plotSpatialData.Rd |only man/processdata.Rd | 4 man/processdataSCR.Rd |only man/simdataCJS.Rd | 4 man/simdataClosed.Rd | 4 man/simdataClosedSCR.Rd |only man/tiger.Rd |only src/ClosedSCR.c |only 32 files changed, 776 insertions(+), 203 deletions(-)